AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056030 MtrunA17_Chr1g0148371 95.872 872 36 0 1 872 1 872 0.0 1457
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056030 AT3G49601.1 56.250 208 75 4 1 202 1 198 2.21e-55 202

Find 272 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACTGAAAACATTGTATT+TGG 0.174540 1_2:-11510936 None:intergenic
TGCTGATTCAGATATTATTT+TGG 0.193625 1_2:-11506403 None:intergenic
TTGAGGGATGAAGACGATTT+TGG 0.202781 1_2:+11510489 Msa0056030:CDS
GAAATGATAATGATTATAAA+AGG 0.232978 1_2:+11509863 Msa0056030:CDS
CAAGAGATGGAAAGCATAAA+AGG 0.234081 1_2:+11509935 Msa0056030:CDS
TTTAACACTTTCTTAATAAT+AGG 0.248340 1_2:-11511132 None:intergenic
TCTTACTGGACCACAGTATT+TGG 0.251086 1_2:-11510976 None:intergenic
CTGTCGTTTATTTCCTCCTT+TGG 0.299374 1_2:-11509430 None:intergenic
TTGAGGGATGGGGATGATTA+TGG 0.306717 1_2:+11510132 Msa0056030:CDS
TGCCTCTTACTAGCCTTTAC+TGG 0.312132 1_2:-11509052 None:intergenic
ATTGTTTGACTTCTAGAATC+TGG 0.313643 1_2:-11509544 None:intergenic
CATTGGTACCAGACCCTCTT+GGG 0.314345 1_2:-11506791 None:intergenic
ATGAAGATAGAGATAGAGAT+AGG 0.324574 1_2:+11509590 Msa0056030:CDS
GACAAGACAAACATGTTAAA+AGG 0.325484 1_2:+11509293 Msa0056030:CDS
ACTGAAATCTCTGTCCAAAA+AGG 0.326245 1_2:-11508675 None:intergenic
TTTCCTTTCTAGCAGCAATT+TGG 0.327828 1_2:-11508508 None:intergenic
AATAAAGTAAAGGCTGTAAG+AGG 0.331751 1_2:+11510885 Msa0056030:three_prime_UTR
TCTAGGGATGGGGATGATTA+TGG 0.332132 1_2:+11510312 Msa0056030:CDS
ATACCGACTATCCCTCTTAC+TGG 0.336030 1_2:-11510990 None:intergenic
ATGAAGAAAGGAAGAACTTA+AGG 0.338628 1_2:+11510259 Msa0056030:CDS
ATGGAGAAAGAAAGAGCTTA+AGG 0.341025 1_2:+11510331 Msa0056030:CDS
GATGGACAAGATAGGAAGTT+TGG 0.347099 1_2:+11509637 Msa0056030:CDS
TTGGAGAAAGAAAGCACTTA+AGG 0.349814 1_2:+11510508 Msa0056030:CDS
ATGGAGAAAGAAAGAACTTA+AGG 0.352771 1_2:+11510151 Msa0056030:CDS
TCAGCTGAATCTGCCGCTTT+CGG 0.354578 1_2:-11506947 None:intergenic
GAGAAAGAAGGCATTATAGA+AGG 0.355736 1_2:+11510811 Msa0056030:CDS
AACAATATGTACAACGGAAT+CGG 0.356790 1_2:+11506759 Msa0056030:exon
AGTGTTAAATGTTCCAAGAT+TGG 0.357105 1_2:+11511146 Msa0056030:three_prime_UTR
AGTAGCAGTGATAGTGAAAC+TGG 0.362833 1_2:+11509340 Msa0056030:CDS
TGAAAACGATGGATCCAATA+TGG 0.363035 1_2:+11507073 Msa0056030:CDS
TTGAGTTCTTTCTTTCTTTG+CGG 0.366491 1_2:-11510650 None:intergenic
AAACACTCACTTATCCATAT+TGG 0.373034 1_2:-11507087 None:intergenic
ATCATCCTTGTACTTTCTCT+TGG 0.374078 1_2:-11508789 None:intergenic
AGAGAGGCAGAAATTATAAC+AGG 0.378338 1_2:+11509770 Msa0056030:CDS
TGAAGATAAGCTGATTGATC+AGG 0.385864 1_2:+11506983 Msa0056030:CDS
TCATCCTTGTACTTTCTCTT+GGG 0.389930 1_2:-11508788 None:intergenic
TCAGCAACCTTCGAAGTTCT+CGG 0.393476 1_2:-11506846 None:intergenic
GGCAGTGTTAGGCATGCTTC+AGG 0.402014 1_2:+11509271 Msa0056030:CDS
TTAGAGAAACAAAGACTAGA+AGG 0.406927 1_2:+11510436 Msa0056030:CDS
GATTCTTTAAGAAAATCATA+TGG 0.409706 1_2:+11509502 Msa0056030:CDS
TATGGAAGAACTAGAAAAGT+TGG 0.411014 1_2:+11509385 Msa0056030:CDS
TGGAGAAAGAAAGCACTTAA+GGG 0.413260 1_2:+11510509 Msa0056030:CDS
AGAGGTAATGCTGCAGGAAA+AGG 0.424877 1_2:+11509451 Msa0056030:CDS
TTTCAGTCGGAAGAAACAAT+TGG 0.425008 1_2:+11508691 Msa0056030:CDS
GTCAAATTTGCTAAGAATGA+TGG 0.435852 1_2:+11509619 Msa0056030:CDS
TGAAAATATGAAGGGGTTTG+AGG 0.438018 1_2:+11506866 Msa0056030:CDS
AGAAAGAGCTTAAGGGATGA+GGG 0.439138 1_2:+11510339 Msa0056030:CDS
TGGAGAAAGAAAGAGCTTAA+GGG 0.439219 1_2:+11510332 Msa0056030:CDS
GAAGGAAGACCTTGAGGGAT+GGG 0.445522 1_2:+11510121 Msa0056030:CDS
TTGGACGAATTGATCGGAAT+AGG 0.455169 1_2:+11509812 Msa0056030:CDS
GAAAATATGAAGGGGTTTGA+GGG 0.457175 1_2:+11506867 Msa0056030:CDS
CCATTGGTACCAGACCCTCT+TGG 0.460535 1_2:-11506792 None:intergenic
AGAGAAGAGCTCTAGGGATG+TGG 0.462100 1_2:+11510407 Msa0056030:CDS
TCACCAAATTGCTGCTAGAA+AGG 0.462437 1_2:+11508505 Msa0056030:CDS
CTAAGCACCGCAAGAAAGGC+AGG 0.463539 1_2:+11508954 Msa0056030:CDS
GGGATGATGATCGTGGAGAA+AGG 0.464631 1_2:+11510832 Msa0056030:CDS
AAATACTGTGGTCCAGTAAG+AGG 0.465571 1_2:+11510978 Msa0056030:three_prime_UTR
GGCTCTATTGATGCGGACTC+TGG 0.469004 1_2:+11509244 Msa0056030:CDS
ACAATATGTACAACGGAATC+GGG 0.472478 1_2:+11506760 Msa0056030:exon
AAGAAAGAGCTTAAGGGATG+AGG 0.473531 1_2:+11510338 Msa0056030:CDS
TGGAGAAAGAAAGAACTTAA+GGG 0.474386 1_2:+11510152 Msa0056030:CDS
AGAAAAGGAGCTCTAGGGAT+GGG 0.475231 1_2:+11510301 Msa0056030:CDS
AATACAGATGGGAATGATGA+AGG 0.476248 1_2:+11508587 Msa0056030:CDS
TAGTGCCAAGGTTGATGGAT+TGG 0.477705 1_2:+11509480 Msa0056030:CDS
AAGAAAGAACTTAAGGGATG+AGG 0.478065 1_2:+11510158 Msa0056030:CDS
CTAAGAATGATGGACAAGAT+AGG 0.479516 1_2:+11509629 Msa0056030:CDS
AGTACGGATGATGAGAAAAC+AGG 0.480046 1_2:+11508830 Msa0056030:CDS
AGAAAGAACTTAAGGGATGA+GGG 0.480455 1_2:+11510159 Msa0056030:CDS
TGAAGAGGCGAGGAATAACT+TGG 0.480606 1_2:+11507037 Msa0056030:CDS
ATTTCAAGTTGAGTTCCAAC+TGG 0.482563 1_2:+11511089 Msa0056030:three_prime_UTR
AATGAAGATGATTCAAGAGA+TGG 0.482878 1_2:+11509922 Msa0056030:CDS
CAGAAGGGAGTAGGAAGAGC+GGG 0.483254 1_2:+11510860 Msa0056030:exon
TTAAGGGATGAGGGTGGCAG+AGG 0.484214 1_2:+11510348 Msa0056030:CDS
TGAAGAAAGGAAGAACTTAA+GGG 0.484449 1_2:+11510260 Msa0056030:CDS
GTGGAGAGAAAAGGAGCTCT+AGG 0.485273 1_2:+11510295 Msa0056030:CDS
TGGACGAATTGATCGGAATA+GGG 0.486136 1_2:+11509813 Msa0056030:CDS
GAAACATTGAAAGCTGCTCT+TGG 0.486237 1_2:+11508539 Msa0056030:CDS
AGGATCAATATATCCAATCT+TGG 0.486286 1_2:-11511159 None:intergenic
TAGAAGTCAAACAATAGCTA+AGG 0.489116 1_2:+11509552 Msa0056030:CDS
GAGAAAAGAAGCTCTAAAGA+TGG 0.490271 1_2:+11510228 Msa0056030:CDS
ATTCTTTAAGAAAATCATAT+GGG 0.491036 1_2:+11509503 Msa0056030:CDS
AATAAAGAACTCTAGGTATG+AGG 0.492130 1_2:+11510587 Msa0056030:CDS
GCTGATGAATTAAATACAGA+TGG 0.493661 1_2:+11508575 Msa0056030:CDS
TGGGAGTTCCACCCTTCTTG+TGG 0.493693 1_2:-11508769 None:intergenic
ACTCTGGTAGAGGCAGTGTT+AGG 0.494351 1_2:+11509260 Msa0056030:CDS
ATGATGAGAAAACAGGTAGA+AGG 0.494540 1_2:+11508837 Msa0056030:CDS
AAGGATGAAGATTATCCTAC+AGG 0.494644 1_2:+11510027 Msa0056030:CDS
GTGGAGAAAGGAAGCACAGA+AGG 0.495191 1_2:+11510844 Msa0056030:CDS
AACCAGTAAAGGCTAGTAAG+AGG 0.497041 1_2:+11509050 Msa0056030:CDS
TAGAGAAAGAAAGAACTCTC+TGG 0.497810 1_2:+11510188 Msa0056030:CDS
GAGGGAGATCAAGGTACTGC+TGG 0.500186 1_2:+11506885 Msa0056030:CDS
TTAAGGGATGGCAATGGCCG+TGG 0.501216 1_2:+11510276 Msa0056030:CDS
GCCGAGGAGAGAAGAGCTCT+AGG 0.501966 1_2:+11510400 Msa0056030:CDS
ATCATCATGAAGGCGTGCCC+AGG 0.502347 1_2:+11509095 Msa0056030:CDS
AAATGATAATGATTATAAAA+GGG 0.503477 1_2:+11509864 Msa0056030:CDS
CACTTCACTAGTCCTACGCC+TGG 0.504019 1_2:-11509113 None:intergenic
TTACAAACCCCAAGAGGGTC+TGG 0.504419 1_2:+11506783 Msa0056030:CDS
AAGAAAGATCAGAAGGATTG+AGG 0.504787 1_2:+11510086 Msa0056030:CDS
TCTCGGGATGGTGATGGCCG+AGG 0.505947 1_2:+11510384 Msa0056030:CDS
TACAGGAAGAAAGCACTTGA+GGG 0.506535 1_2:+11510044 Msa0056030:CDS
TAATGATTATAAAAGGGATC+AGG 0.509329 1_2:+11509870 Msa0056030:CDS
AGAAAAGAAGCTCTAAAGAT+GGG 0.509515 1_2:+11510229 Msa0056030:CDS
CCCTAGAGCTCTTCTCTCCT+CGG 0.511915 1_2:-11510401 None:intergenic
ATCAGCATCAGATTCCTCTT+CGG 0.512144 1_2:-11509170 None:intergenic
TCTAAAGCAGCTAGGATCAG+AGG 0.513743 1_2:+11509724 Msa0056030:CDS
AAGGAAGACCTTGAGGGATG+GGG 0.513937 1_2:+11510122 Msa0056030:CDS
GAAGGTTGCTGAAAATATGA+AGG 0.515977 1_2:+11506857 Msa0056030:CDS
GTGTAGAAATAAAGAACTCT+AGG 0.518740 1_2:+11510580 Msa0056030:CDS
AAGCAGAAAACTAGGAGGTA+TGG 0.521789 1_2:+11509223 Msa0056030:CDS
ATGGAAGAACTAGAAAAGTT+GGG 0.521877 1_2:+11509386 Msa0056030:CDS
ATACAGATGGGAATGATGAA+GGG 0.522361 1_2:+11508588 Msa0056030:CDS
AAGAGATGGAAAGCATAAAA+GGG 0.524413 1_2:+11509936 Msa0056030:CDS
TACTGCTGGTGTTAGTAGAA+AGG 0.524874 1_2:+11506899 Msa0056030:CDS
AAGGGGTTTGAGGGAGATCA+AGG 0.526411 1_2:+11506876 Msa0056030:CDS
GATGGGAATGATGAAGGGGC+TGG 0.527895 1_2:+11508593 Msa0056030:CDS
GGATTATGAAACAAGAAGGA+AGG 0.531442 1_2:+11509837 Msa0056030:CDS
GAGAAAGAGCTCAAGGGATG+AGG 0.531478 1_2:+11510695 Msa0056030:CDS
GATGTTGAATCACAATCTGT+TGG 0.531914 1_2:+11509793 Msa0056030:CDS
AGAAAGAAGGCATTATAGAA+GGG 0.532131 1_2:+11510812 Msa0056030:CDS
ACATCTAAGCACCGCAAGAA+AGG 0.532339 1_2:+11508950 Msa0056030:CDS
GGAAGGAAGACCTTGAGGGA+TGG 0.533795 1_2:+11510120 Msa0056030:CDS
TGAAGATAGAGATAGAGATA+GGG 0.536073 1_2:+11509591 Msa0056030:CDS
CTGTCATTCATGAAAATAGC+AGG 0.536704 1_2:-11511179 None:intergenic
ATTGATGCGGACTCTGGTAG+AGG 0.536751 1_2:+11509250 Msa0056030:CDS
GAGAAGAGCTCTAGGGATGT+GGG 0.537490 1_2:+11510408 Msa0056030:CDS
GAGGTAATGCTGCAGGAAAA+GGG 0.538469 1_2:+11509452 Msa0056030:CDS
GAGGAGAAAGAAAGAACTCT+CGG 0.539758 1_2:+11510367 Msa0056030:CDS
AACGACAGAGGTAATGCTGC+AGG 0.540250 1_2:+11509445 Msa0056030:CDS
AGAGGGGATGATGAGTATCA+TGG 0.540257 1_2:+11510741 Msa0056030:CDS
CCAAGAGGGTCTGGTACCAA+TGG 0.542448 1_2:+11506792 Msa0056030:CDS
AAGGAAGAACTCAAGGGAAG+AGG 0.544319 1_2:+11510623 Msa0056030:CDS
AAGAAAGCACTTAAGGGATG+AGG 0.545463 1_2:+11510515 Msa0056030:CDS
GACTTGAGAAGCAGAAAACT+AGG 0.546480 1_2:+11509215 Msa0056030:CDS
GGGAGGATTATGAAACAAGA+AGG 0.546874 1_2:+11509833 Msa0056030:CDS
CAAGAGGGTCTGGTACCAAT+GGG 0.547119 1_2:+11506793 Msa0056030:CDS
ACAGAGAGAGAAAGAGCTCA+AGG 0.548074 1_2:+11510688 Msa0056030:CDS
GACACAAAGTGCCACAAGAA+GGG 0.549590 1_2:+11508758 Msa0056030:CDS
AAGGAAGCACAGAAGGGAGT+AGG 0.549615 1_2:+11510851 Msa0056030:CDS
GAGAAAAGGAGCTCTAGGGA+TGG 0.550005 1_2:+11510300 Msa0056030:CDS
ATGGGGATGATTATGAAGAA+AGG 0.550971 1_2:+11510247 Msa0056030:CDS
GAAAAGGAGCTCTAGGGATG+GGG 0.552267 1_2:+11510302 Msa0056030:CDS
AGTGATAGTGATCGCAGGTA+TGG 0.552398 1_2:+11509367 Msa0056030:CDS
CATCCACCCTGCCTTTCTTG+CGG 0.553444 1_2:-11508961 None:intergenic
TGCAGGAAGGAAGACCTTGA+GGG 0.553552 1_2:+11510116 Msa0056030:CDS
CGCGTTCGAAATCGATAAAG+CGG 0.554558 1_2:-11506487 None:intergenic
GAAGCACAAAACAGAAGGGA+TGG 0.557465 1_2:+11510549 Msa0056030:CDS
CACCAACAAAATTGACCAGT+TGG 0.557535 1_2:-11511104 None:intergenic
TACAGGAAGAAAGACCTTGA+GGG 0.558041 1_2:+11510473 Msa0056030:CDS
GATGAAGGGGCTGGAAACGA+AGG 0.559192 1_2:+11508602 Msa0056030:CDS
GCAAAGAAAGGAAGAACTCA+AGG 0.561372 1_2:+11510616 Msa0056030:CDS
ATAGAGAAGCACAAAACAGA+AGG 0.562661 1_2:+11510544 Msa0056030:CDS
CTACAGGAAGAAAGCACTTG+AGG 0.564894 1_2:+11510043 Msa0056030:CDS
AGAATCCAATCCATCAACCT+TGG 0.565326 1_2:-11509485 None:intergenic
CTAAAGCAGCTAGGATCAGA+GGG 0.565611 1_2:+11509725 Msa0056030:CDS
ATGAGGATGATCGCAAAGAA+AGG 0.565805 1_2:+11510604 Msa0056030:CDS
ATGAAGGCGTGCCCAGGCGT+AGG 0.565815 1_2:+11509101 Msa0056030:CDS
GAAGATAAGCTGATTGATCA+GGG 0.567835 1_2:+11506984 Msa0056030:CDS
AAGGTTGCTGAAAATATGAA+GGG 0.570610 1_2:+11506858 Msa0056030:CDS
AAGAACTCTCGGGATGGTGA+TGG 0.570968 1_2:+11510378 Msa0056030:CDS
TTCTTGAGCATGACCGAAAG+CGG 0.571093 1_2:+11506934 Msa0056030:CDS
CGTGAAGCCGAGAACTTCGA+AGG 0.571228 1_2:+11506839 Msa0056030:CDS
GCAAAGAAAGAAAGAACTCA+AGG 0.572016 1_2:+11510652 Msa0056030:CDS
CAGTCGGAAGAAACAATTGG+AGG 0.572032 1_2:+11508694 Msa0056030:CDS
GATTATGAAACAAGAAGGAA+GGG 0.574761 1_2:+11509838 Msa0056030:CDS
AGGATTGAGGATGAACGTGC+AGG 0.578381 1_2:+11510099 Msa0056030:CDS
AAGCACAAAACAGAAGGGAT+GGG 0.579129 1_2:+11510550 Msa0056030:CDS
AAAAGCTTAAGAGATGAAGA+TGG 0.579544 1_2:+11509982 Msa0056030:CDS
CCGAGGAGAGAAGAGCTCTA+GGG 0.580921 1_2:+11510401 Msa0056030:CDS
ATGGAGAAAGAAAGCGCGGA+AGG 0.581208 1_2:+11510760 Msa0056030:CDS
AGACACAAAGTGCCACAAGA+AGG 0.581820 1_2:+11508757 Msa0056030:CDS
TATGGGAGAGATTATAAAGA+GGG 0.582883 1_2:+11509520 Msa0056030:CDS
ATTCTGATAGTGATGCTAAG+AGG 0.583073 1_2:+11508900 Msa0056030:CDS
AGGATCGAGGATGATCGTAC+AGG 0.583123 1_2:+11510456 Msa0056030:CDS
TCAAGGGATGAGGATGTTCG+TGG 0.583178 1_2:+11510705 Msa0056030:CDS
GCAATGGCCGTGGAGAGAAA+AGG 0.583518 1_2:+11510286 Msa0056030:CDS
TGGAGAGAGAAGGCATGGAA+AGG 0.586417 1_2:+11510008 Msa0056030:CDS
GTGGGGAAAGAAAGCACAGA+GGG 0.586721 1_2:+11510724 Msa0056030:CDS
ACGGAGAAAGAAAGATCAGA+AGG 0.587778 1_2:+11510079 Msa0056030:CDS
GGTCGTGGAGAGAGAAGGCA+TGG 0.587909 1_2:+11510003 Msa0056030:CDS
AAGGGACGAGGAAGACCGAC+GGG 0.589493 1_2:+11509954 Msa0056030:CDS
CTGATGAATTAAATACAGAT+GGG 0.590577 1_2:+11508576 Msa0056030:CDS
CAAGGGATGAGGATGTTCGT+GGG 0.591261 1_2:+11510706 Msa0056030:CDS
AATGAAAATGAAGAAAGAGA+TGG 0.593131 1_2:+11509697 Msa0056030:CDS
ATCAGATTCATCACTACTGT+CGG 0.593798 1_2:-11508879 None:intergenic
TACAGATGGGAATGATGAAG+GGG 0.594685 1_2:+11508589 Msa0056030:CDS
AGAAGTCAAACAATAGCTAA+GGG 0.595420 1_2:+11509553 Msa0056030:CDS
AGCGAAGAGAAGTGAGCCAA+AGG 0.596644 1_2:+11509414 Msa0056030:CDS
ATAAAGTAAAGGCTGTAAGA+GGG 0.596806 1_2:+11510886 Msa0056030:three_prime_UTR
AGTAAGAGGCATGATTCAGA+TGG 0.597582 1_2:+11509064 Msa0056030:CDS
TTATACTGAGGCTGAGATTG+CGG 0.598508 1_2:+11507007 Msa0056030:CDS
TGGAGAGAAAAGGAGCTCTA+GGG 0.599906 1_2:+11510296 Msa0056030:CDS
AGAGCGGGAAAATAAAGTAA+AGG 0.599997 1_2:+11510875 Msa0056030:three_prime_UTR
AGGAGAAAGAAAGAACTCTC+GGG 0.601526 1_2:+11510368 Msa0056030:CDS
AGCACAAAACAGAAGGGATG+GGG 0.601555 1_2:+11510551 Msa0056030:CDS
TGATTTCTCTTCTGATAGTG+AGG 0.602201 1_2:+11508997 Msa0056030:CDS
ATAATCATCCCCATCCCTCA+AGG 0.602864 1_2:-11510130 None:intergenic
CGGAGAAGCTTGAAGAGGCG+AGG 0.603883 1_2:+11507027 Msa0056030:CDS
AAAGGGACGAGGAAGACCGA+CGG 0.606203 1_2:+11509953 Msa0056030:CDS
ATGGTTATTCTAAAGCAGCT+AGG 0.608813 1_2:+11509716 Msa0056030:CDS
ATTGGTACCAGACCCTCTTG+GGG 0.610172 1_2:-11506790 None:intergenic
TCTCTGGATGGCAATGTCCG+TGG 0.610872 1_2:+11510204 Msa0056030:CDS
GGAGATTCTGATCATCATGA+AGG 0.612338 1_2:+11509085 Msa0056030:CDS
AGAAAGCACTTAAGGGATGA+GGG 0.614396 1_2:+11510516 Msa0056030:CDS
GGAATCTGATGCTGATAGTG+AGG 0.614998 1_2:+11509177 Msa0056030:CDS
AATACTGTGGTCCAGTAAGA+GGG 0.617358 1_2:+11510979 Msa0056030:three_prime_UTR
ATGATGGTCATGGAGAAAGA+AGG 0.618260 1_2:+11510799 Msa0056030:CDS
GAAAGGAAGAACTTAAGGGA+TGG 0.618658 1_2:+11510264 Msa0056030:CDS
TTAAGAGATGAAGATGGTCG+TGG 0.619971 1_2:+11509988 Msa0056030:CDS
AATCTGTTGGACGAATTGAT+CGG 0.619988 1_2:+11509806 Msa0056030:CDS
AACTCCCAAGAGAAAGTACA+AGG 0.620318 1_2:+11508784 Msa0056030:CDS
AAAATCGTCTTCATCCCTCA+AGG 0.623427 1_2:-11510487 None:intergenic
GTGCAGGAAGGAAGACCTTG+AGG 0.624100 1_2:+11510115 Msa0056030:CDS
AACAAAGACTAGAAGGATCG+AGG 0.625322 1_2:+11510443 Msa0056030:CDS
ATCTGATTCAGATAGCAGTA+CGG 0.625946 1_2:+11508814 Msa0056030:CDS
TGATAGTGATGCTAAGAGGA+AGG 0.626197 1_2:+11508904 Msa0056030:CDS
GAAAGAAAGAACTCTCTGGA+TGG 0.626232 1_2:+11510192 Msa0056030:CDS
TTTGTTGTCTTATGTTTCTG+CGG 0.626276 1_2:+11511015 Msa0056030:three_prime_UTR
CTCAAGTGCTTTCTTCCTGT+AGG 0.626993 1_2:-11510042 None:intergenic
TTGAGGATGAACGTGCAGGA+AGG 0.627354 1_2:+11510103 Msa0056030:CDS
CAGAGAGAGAAAGAGCTCAA+GGG 0.628373 1_2:+11510689 Msa0056030:CDS
ACAAAGTGCCACAAGAAGGG+TGG 0.628877 1_2:+11508761 Msa0056030:CDS
ATCACTGCTACTCTCATCAG+AGG 0.629147 1_2:-11509329 None:intergenic
GCAGCAGTGATAGTGATCGC+AGG 0.630849 1_2:+11509362 Msa0056030:CDS
TGGAGAAAGGAAGCACAGAA+GGG 0.632562 1_2:+11510845 Msa0056030:CDS
GTTGCTTTGAATGTACCCAT+TGG 0.633884 1_2:-11506808 None:intergenic
ACAGAAGGGAGTAGGAAGAG+CGG 0.634481 1_2:+11510859 Msa0056030:exon
TGGAGAAAGAAAGCGCGGAA+GGG 0.634848 1_2:+11510761 Msa0056030:CDS
ATGAAGGGGCTGGAAACGAA+GGG 0.636206 1_2:+11508603 Msa0056030:CDS
ATATGGGAGAGATTATAAAG+AGG 0.636317 1_2:+11509519 Msa0056030:CDS
ACTTCACTAGTCCTACGCCT+GGG 0.636349 1_2:-11509112 None:intergenic
CAAAACAGAAGGGATGGGGA+TGG 0.637014 1_2:+11510555 Msa0056030:CDS
TATAGAAGGGATGATGATCG+TGG 0.640097 1_2:+11510825 Msa0056030:CDS
AAGATGGTCGTGGAGAGAGA+AGG 0.641121 1_2:+11509998 Msa0056030:CDS
GTAGGACTAGTGAAGTGAAG+AGG 0.641552 1_2:+11509119 Msa0056030:CDS
TTGAGGGATGAAGATGATCA+CGG 0.641692 1_2:+11510060 Msa0056030:CDS
ATCGGGTTACAAACCCCAAG+AGG 0.642712 1_2:+11506777 Msa0056030:CDS
TGATGCTAAGAGGAAGGTCA+AGG 0.643266 1_2:+11508910 Msa0056030:CDS
AGAGGCGAGGAATAACTTGG+AGG 0.647831 1_2:+11507040 Msa0056030:CDS
GAAAAGAAGCTCTAAAGATG+GGG 0.648182 1_2:+11510230 Msa0056030:CDS
TAGAGAAGCACAAAACAGAA+GGG 0.648296 1_2:+11510545 Msa0056030:CDS
GTACAGGAAGAAAGACCTTG+AGG 0.650077 1_2:+11510472 Msa0056030:CDS
CAAACATCATGATTCCGAAG+AGG 0.650482 1_2:+11509156 Msa0056030:CDS
GAGGTATGGCTCTATTGATG+CGG 0.659250 1_2:+11509237 Msa0056030:CDS
CAAAGAAAGAAAGAACTCAA+GGG 0.659434 1_2:+11510653 Msa0056030:CDS
GAAAGAAAGAACTCTCGGGA+TGG 0.661874 1_2:+11510372 Msa0056030:CDS
GCTGCAGCTGATGAAAACGA+TGG 0.664817 1_2:+11507062 Msa0056030:CDS
TGGAAAGCATAAAAGGGACG+AGG 0.666249 1_2:+11509942 Msa0056030:CDS
ACGAATTGATCGGAATAGGG+AGG 0.666293 1_2:+11509816 Msa0056030:CDS
CAAAGAAAGGAAGAACTCAA+GGG 0.668656 1_2:+11510617 Msa0056030:CDS
GTCGCGAACAATATGTACAA+CGG 0.669321 1_2:+11506753 Msa0056030:exon
AAGGGATGAGGATGTTCGTG+GGG 0.670207 1_2:+11510707 Msa0056030:CDS
GATTGCGGAGAAGCTTGAAG+AGG 0.675067 1_2:+11507022 Msa0056030:CDS
AAGAGCTTAAGGGATGAGGG+TGG 0.676066 1_2:+11510342 Msa0056030:CDS
TCGGGTTACAAACCCCAAGA+GGG 0.677908 1_2:+11506778 Msa0056030:CDS
GATAGTGAGGAAGAGAAACA+TGG 0.678163 1_2:+11509190 Msa0056030:CDS
AGGTTGCTGAAAATATGAAG+GGG 0.679407 1_2:+11506859 Msa0056030:CDS
TTGAGAAGCAGAAAACTAGG+AGG 0.679981 1_2:+11509218 Msa0056030:CDS
TAAGCACCGCAAGAAAGGCA+GGG 0.680248 1_2:+11508955 Msa0056030:CDS
GGTCCAGTAAGAGGGATAGT+CGG 0.682996 1_2:+11510987 Msa0056030:three_prime_UTR
AAGAACTTAAGGGATGGCAA+TGG 0.685392 1_2:+11510270 Msa0056030:CDS
GAAGAGAAGTGAGCCAAAGG+AGG 0.686174 1_2:+11509417 Msa0056030:CDS
AGCATGAAAACCAAATACTG+TGG 0.687045 1_2:+11510966 Msa0056030:three_prime_UTR
AAGACAAACATGTTAAAAGG+CGG 0.697682 1_2:+11509296 Msa0056030:CDS
GCACCGCAAGAAAGGCAGGG+TGG 0.701049 1_2:+11508958 Msa0056030:CDS
TATCATGGAGAAAGAAAGCG+CGG 0.706879 1_2:+11510756 Msa0056030:CDS
GATTGATCAGGGTTATACTG+AGG 0.707882 1_2:+11506995 Msa0056030:CDS
AATGAAACTTCTGATCAGAG+AGG 0.718112 1_2:+11509754 Msa0056030:CDS
GAGAGGCAGAAATTATAACA+GGG 0.720186 1_2:+11509771 Msa0056030:CDS
AAGGAGGAAATAAACGACAG+AGG 0.720901 1_2:+11509433 Msa0056030:CDS
AAGAACTTAAGGGATGAGGG+TGG 0.740111 1_2:+11510162 Msa0056030:CDS
TGGGGAAAGAAAGCACAGAG+GGG 0.758387 1_2:+11510725 Msa0056030:CDS
CGTGGGGAAAGAAAGCACAG+AGG 0.779210 1_2:+11510723 Msa0056030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATAATGATTATAAAA+GGG + chr1_2:11509864-11509883 Msa0056030:CDS 10.0%
!! TTAAATTATTATTGGTATCA+AGG - chr1_2:11507394-11507413 None:intergenic 15.0%
!!! ATAGTTGATTCTTAAAAAAT+GGG - chr1_2:11507815-11507834 None:intergenic 15.0%
!!! TATAGTTGATTCTTAAAAAA+TGG - chr1_2:11507816-11507835 None:intergenic 15.0%
!!! ATATTTCAGATATTTTTTCA+TGG - chr1_2:11508340-11508359 None:intergenic 15.0%
!! TTCACAAAAAAAAATAGTTA+GGG - chr1_2:11508408-11508427 None:intergenic 15.0%
!! ATTCACAAAAAAAAATAGTT+AGG - chr1_2:11508409-11508428 None:intergenic 15.0%
!! ATCATTAACAAAAACTTATA+TGG + chr1_2:11508455-11508474 Msa0056030:intron 15.0%
!!! ATTCTTTAAGAAAATCATAT+GGG + chr1_2:11509503-11509522 Msa0056030:CDS 15.0%
!!! GAAATGATAATGATTATAAA+AGG + chr1_2:11509863-11509882 Msa0056030:CDS 15.0%
!! TTTAACACTTTCTTAATAAT+AGG - chr1_2:11511135-11511154 None:intergenic 15.0%
!! ATTTCCGTTCTTTATAAATT+TGG + chr1_2:11506568-11506587 Msa0056030:intron 20.0%
!! TTTCCGTTCTTTATAAATTT+GGG + chr1_2:11506569-11506588 Msa0056030:intron 20.0%
!! AAACCCAAATTTATAAAGAA+CGG - chr1_2:11506575-11506594 None:intergenic 20.0%
!! GATGCAATTAACAAATTTAA+GGG - chr1_2:11506646-11506665 None:intergenic 20.0%
!! TGATGCAATTAACAAATTTA+AGG - chr1_2:11506647-11506666 None:intergenic 20.0%
!! ATCAATTTCTGTTGAAATTA+AGG + chr1_2:11506685-11506704 Msa0056030:intron 20.0%
!! TTAAATTATTATTGGCATCA+AGG - chr1_2:11507257-11507276 None:intergenic 20.0%
!! TCTTCTGACAAAAAAAATAT+TGG + chr1_2:11507574-11507593 Msa0056030:intron 20.0%
!!! TCAATTTGTATTTTTTAGAC+TGG + chr1_2:11507617-11507636 Msa0056030:intron 20.0%
!!! AAAACGTGTTTTTTTTTTTC+AGG + chr1_2:11507747-11507766 Msa0056030:intron 20.0%
!!! AAACGTGTTTTTTTTTTTCA+GGG + chr1_2:11507748-11507767 Msa0056030:intron 20.0%
!!! TGGCTTACTTTTTTTAAAAA+TGG + chr1_2:11507881-11507900 Msa0056030:intron 20.0%
!! TAATGAATTAACTATTTCCA+CGG + chr1_2:11508053-11508072 Msa0056030:intron 20.0%
!! TAAAAGAACATCATGATTAA+TGG - chr1_2:11508162-11508181 None:intergenic 20.0%
!! GAAAAAGAAAAAGAAAAAAC+AGG - chr1_2:11508263-11508282 None:intergenic 20.0%
!!! TATAAGTATTTAGAACAGAT+TGG - chr1_2:11508291-11508310 None:intergenic 20.0%
!! TCACAAAAAAAAATAGTTAG+GGG - chr1_2:11508407-11508426 None:intergenic 20.0%
!!! AGTTTTTGTTAATGATACTT+AGG - chr1_2:11508451-11508470 None:intergenic 20.0%
!!! AAAACTTATATGGAATTTTC+AGG + chr1_2:11508465-11508484 Msa0056030:intron 20.0%
!! AAGTAATAAAAAACCAGTAA+AGG + chr1_2:11509039-11509058 Msa0056030:CDS 20.0%
!!! GATTCTTTAAGAAAATCATA+TGG + chr1_2:11509502-11509521 Msa0056030:CDS 20.0%
!!! CTGATTCAGATATTATTTTG+GGG - chr1_2:11506404-11506423 None:intergenic 25.0%
!!! GCTGATTCAGATATTATTTT+GGG - chr1_2:11506405-11506424 None:intergenic 25.0%
!!! TGCTGATTCAGATATTATTT+TGG - chr1_2:11506406-11506425 None:intergenic 25.0%
! TTATGAATTAACTGTTTCCA+CGG + chr1_2:11507548-11507567 Msa0056030:intron 25.0%
! CAAAAAAAATATTGGCATGT+TGG + chr1_2:11507582-11507601 Msa0056030:intron 25.0%
!!! TTTTTCAAGCTTAACCAAAT+GGG - chr1_2:11507707-11507726 None:intergenic 25.0%
!!! TTTTTTCAAGCTTAACCAAA+TGG - chr1_2:11507708-11507727 None:intergenic 25.0%
!! GCTTGAAAAAAGTGATTTTA+AGG + chr1_2:11507717-11507736 Msa0056030:intron 25.0%
! AATGAATTAACTATTTCCAC+GGG + chr1_2:11508054-11508073 Msa0056030:intron 25.0%
! ACTCTTCTGACAAAAATTAT+TGG + chr1_2:11508077-11508096 Msa0056030:intron 25.0%
!!! GATTATTTTAAGCTCTGTTT+GGG - chr1_2:11508234-11508253 None:intergenic 25.0%
!!! TGATTATTTTAAGCTCTGTT+TGG - chr1_2:11508235-11508254 None:intergenic 25.0%
! TTATAAATGCAGTTACAGAA+AGG + chr1_2:11508375-11508394 Msa0056030:intron 25.0%
! CTGATGAATTAAATACAGAT+GGG + chr1_2:11508576-11508595 Msa0056030:CDS 25.0%
! AATGAAAATGAAGAAAGAGA+TGG + chr1_2:11509697-11509716 Msa0056030:CDS 25.0%
! TAATGATTATAAAAGGGATC+AGG + chr1_2:11509870-11509889 Msa0056030:CDS 25.0%
!!! TTCCATGTTTTTTTTCTTCA+TGG - chr1_2:11509900-11509919 None:intergenic 25.0%
! ATGAAGAAAAAAAACATGGA+AGG + chr1_2:11509899-11509918 Msa0056030:CDS 25.0%
!!! AACATTGTATTTGGTTTTCT+GGG - chr1_2:11510930-11510949 None:intergenic 25.0%
!!! AAACATTGTATTTGGTTTTC+TGG - chr1_2:11510931-11510950 None:intergenic 25.0%
! TGAACTGAAAACATTGTATT+TGG - chr1_2:11510939-11510958 None:intergenic 25.0%
!! ATACAATGTTTTCAGTTCAA+AGG + chr1_2:11510940-11510959 Msa0056030:three_prime_UTR 25.0%
! TCTCTCTTCTTTCTTTTCTA+CGG + chr1_2:11506518-11506537 Msa0056030:five_prime_UTR 30.0%
AACAATATGTACAACGGAAT+CGG + chr1_2:11506759-11506778 Msa0056030:exon 30.0%
AAGGTTGCTGAAAATATGAA+GGG + chr1_2:11506858-11506877 Msa0056030:CDS 30.0%
AAACACTCACTTATCCATAT+TGG - chr1_2:11507090-11507109 None:intergenic 30.0%
! ATATGGATAAGTGAGTGTTT+TGG + chr1_2:11507090-11507109 Msa0056030:intron 30.0%
!! TGGATTTTGATAGTTGTGTT+AGG + chr1_2:11507110-11507129 Msa0056030:intron 30.0%
! ATTGTTGGTTAGCATGATAT+TGG + chr1_2:11507208-11507227 Msa0056030:intron 30.0%
!! TAAGTGGTTAGTTTCATGTT+AGG + chr1_2:11507519-11507538 Msa0056030:intron 30.0%
!! AAGTGGTTAGTTTCATGTTA+GGG + chr1_2:11507520-11507539 Msa0056030:intron 30.0%
TATGAATTAACTGTTTCCAC+GGG + chr1_2:11507549-11507568 Msa0056030:intron 30.0%
ATGCAATTAGACATAGTTTC+AGG + chr1_2:11507666-11507685 Msa0056030:intron 30.0%
TGCAATTAGACATAGTTTCA+GGG + chr1_2:11507667-11507686 Msa0056030:intron 30.0%
! GTTGATTCTTAAAAAATGGG+TGG - chr1_2:11507812-11507831 None:intergenic 30.0%
AACTATAAGTAGTTTCCTGA+GGG + chr1_2:11507829-11507848 Msa0056030:intron 30.0%
!! AGTGGTTAGTTTCATATTAG+AGG + chr1_2:11508009-11508028 Msa0056030:intron 30.0%
GACAAAAATTATTGGCATGT+TGG + chr1_2:11508085-11508104 Msa0056030:intron 30.0%
GCTGATGAATTAAATACAGA+TGG + chr1_2:11508575-11508594 Msa0056030:CDS 30.0%
! GTCTTTAACACTCTTTTTCT+TGG - chr1_2:11508741-11508760 None:intergenic 30.0%
GACAAGACAAACATGTTAAA+AGG + chr1_2:11509293-11509312 Msa0056030:CDS 30.0%
AAGACAAACATGTTAAAAGG+CGG + chr1_2:11509296-11509315 Msa0056030:CDS 30.0%
TATGGAAGAACTAGAAAAGT+TGG + chr1_2:11509385-11509404 Msa0056030:CDS 30.0%
ATGGAAGAACTAGAAAAGTT+GGG + chr1_2:11509386-11509405 Msa0056030:CDS 30.0%
ATATGGGAGAGATTATAAAG+AGG + chr1_2:11509519-11509538 Msa0056030:CDS 30.0%
TATGGGAGAGATTATAAAGA+GGG + chr1_2:11509520-11509539 Msa0056030:CDS 30.0%
!! ATTGTTTGACTTCTAGAATC+TGG - chr1_2:11509547-11509566 None:intergenic 30.0%
TAGAAGTCAAACAATAGCTA+AGG + chr1_2:11509552-11509571 Msa0056030:CDS 30.0%
AGAAGTCAAACAATAGCTAA+GGG + chr1_2:11509553-11509572 Msa0056030:CDS 30.0%
ATGAAGATAGAGATAGAGAT+AGG + chr1_2:11509590-11509609 Msa0056030:CDS 30.0%
TGAAGATAGAGATAGAGATA+GGG + chr1_2:11509591-11509610 Msa0056030:CDS 30.0%
!! GTCAAATTTGCTAAGAATGA+TGG + chr1_2:11509619-11509638 Msa0056030:CDS 30.0%
GATTATGAAACAAGAAGGAA+GGG + chr1_2:11509838-11509857 Msa0056030:CDS 30.0%
GACCATGAAGAAAAAAAACA+TGG + chr1_2:11509895-11509914 Msa0056030:CDS 30.0%
AATGAAGATGATTCAAGAGA+TGG + chr1_2:11509922-11509941 Msa0056030:CDS 30.0%
! AAGAGATGGAAAGCATAAAA+GGG + chr1_2:11509936-11509955 Msa0056030:CDS 30.0%
AAAAGCTTAAGAGATGAAGA+TGG + chr1_2:11509982-11510001 Msa0056030:CDS 30.0%
ATGGAGAAAGAAAGAACTTA+AGG + chr1_2:11510151-11510170 Msa0056030:CDS 30.0%
TGGAGAAAGAAAGAACTTAA+GGG + chr1_2:11510152-11510171 Msa0056030:CDS 30.0%
!! AGAAAAGAAGCTCTAAAGAT+GGG + chr1_2:11510229-11510248 Msa0056030:CDS 30.0%
ATGAAGAAAGGAAGAACTTA+AGG + chr1_2:11510259-11510278 Msa0056030:CDS 30.0%
TGAAGAAAGGAAGAACTTAA+GGG + chr1_2:11510260-11510279 Msa0056030:CDS 30.0%
TTAGAGAAACAAAGACTAGA+AGG + chr1_2:11510436-11510455 Msa0056030:CDS 30.0%
GTGTAGAAATAAAGAACTCT+AGG + chr1_2:11510580-11510599 Msa0056030:CDS 30.0%
AATAAAGAACTCTAGGTATG+AGG + chr1_2:11510587-11510606 Msa0056030:CDS 30.0%
TTGAGTTCTTTCTTTCTTTG+CGG - chr1_2:11510653-11510672 None:intergenic 30.0%
CAAAGAAAGAAAGAACTCAA+GGG + chr1_2:11510653-11510672 Msa0056030:CDS 30.0%
!! AGAAAGAAGGCATTATAGAA+GGG + chr1_2:11510812-11510831 Msa0056030:CDS 30.0%
AATAAAGTAAAGGCTGTAAG+AGG + chr1_2:11510885-11510904 Msa0056030:three_prime_UTR 30.0%
ATAAAGTAAAGGCTGTAAGA+GGG + chr1_2:11510886-11510905 Msa0056030:three_prime_UTR 30.0%
! TTTGTTGTCTTATGTTTCTG+CGG + chr1_2:11511015-11511034 Msa0056030:three_prime_UTR 30.0%
AGTGTTAAATGTTCCAAGAT+TGG + chr1_2:11511146-11511165 Msa0056030:three_prime_UTR 30.0%
AGGATCAATATATCCAATCT+TGG - chr1_2:11511162-11511181 None:intergenic 30.0%
AGGTTTCTGATATACGTTTC+TGG + chr1_2:11506705-11506724 Msa0056030:intron 35.0%
GGTTTCTGATATACGTTTCT+GGG + chr1_2:11506706-11506725 Msa0056030:intron 35.0%
GTTTCTGATATACGTTTCTG+GGG + chr1_2:11506707-11506726 Msa0056030:intron 35.0%
ACAATATGTACAACGGAATC+GGG + chr1_2:11506760-11506779 Msa0056030:exon 35.0%
GAAGGTTGCTGAAAATATGA+AGG + chr1_2:11506857-11506876 Msa0056030:CDS 35.0%
AGGTTGCTGAAAATATGAAG+GGG + chr1_2:11506859-11506878 Msa0056030:CDS 35.0%
TGAAAATATGAAGGGGTTTG+AGG + chr1_2:11506866-11506885 Msa0056030:CDS 35.0%
GAAAATATGAAGGGGTTTGA+GGG + chr1_2:11506867-11506886 Msa0056030:CDS 35.0%
TGAAGATAAGCTGATTGATC+AGG + chr1_2:11506983-11507002 Msa0056030:CDS 35.0%
GAAGATAAGCTGATTGATCA+GGG + chr1_2:11506984-11507003 Msa0056030:CDS 35.0%
TGAAAACGATGGATCCAATA+TGG + chr1_2:11507073-11507092 Msa0056030:CDS 35.0%
TGTTAGGATTGTTTGATGTG+TGG + chr1_2:11507126-11507145 Msa0056030:intron 35.0%
GTTAGGATTGTTTGATGTGT+GGG + chr1_2:11507127-11507146 Msa0056030:intron 35.0%
! ATTATTGGCATCAAGGTGTT+CGG - chr1_2:11507250-11507269 None:intergenic 35.0%
!! AGTGGTTAGTTTCATGTTAG+GGG + chr1_2:11507521-11507540 Msa0056030:intron 35.0%
! GTTGTTGTGTGTGATTTTAG+AGG + chr1_2:11507639-11507658 Msa0056030:intron 35.0%
GCAATTAGACATAGTTTCAG+GGG + chr1_2:11507668-11507687 Msa0056030:intron 35.0%
CAATTAGACATAGTTTCAGG+GGG + chr1_2:11507669-11507688 Msa0056030:intron 35.0%
CAACTATAAGTAGTTTCCTG+AGG + chr1_2:11507828-11507847 Msa0056030:intron 35.0%
TATGTTTAGATGGAGGGTTT+AGG + chr1_2:11507852-11507871 Msa0056030:intron 35.0%
ATGTTTAGATGGAGGGTTTA+GGG + chr1_2:11507853-11507872 Msa0056030:intron 35.0%
!! GGTTAGTTTCATATTAGAGG+CGG + chr1_2:11508012-11508031 Msa0056030:intron 35.0%
TATTAGAGGCGGTTTATGAA+TGG + chr1_2:11508023-11508042 Msa0056030:intron 35.0%
! ATTTTAAGCTCTGTTTGGGA+AGG - chr1_2:11508230-11508249 None:intergenic 35.0%
! TTTCCTTTCTAGCAGCAATT+TGG - chr1_2:11508511-11508530 None:intergenic 35.0%
TGCTAGAAAGGAAAAACAGA+TGG + chr1_2:11508517-11508536 Msa0056030:CDS 35.0%
AATACAGATGGGAATGATGA+AGG + chr1_2:11508587-11508606 Msa0056030:CDS 35.0%
ATACAGATGGGAATGATGAA+GGG + chr1_2:11508588-11508607 Msa0056030:CDS 35.0%
! GAAACCTGAACATTCCTTTT+TGG + chr1_2:11508661-11508680 Msa0056030:CDS 35.0%
ACTGAAATCTCTGTCCAAAA+AGG - chr1_2:11508678-11508697 None:intergenic 35.0%
! TTTTGGACAGAGATTTCAGT+CGG + chr1_2:11508678-11508697 Msa0056030:CDS 35.0%
TTTCAGTCGGAAGAAACAAT+TGG + chr1_2:11508691-11508710 Msa0056030:CDS 35.0%
TCATCCTTGTACTTTCTCTT+GGG - chr1_2:11508791-11508810 None:intergenic 35.0%
ATCATCCTTGTACTTTCTCT+TGG - chr1_2:11508792-11508811 None:intergenic 35.0%
ATCTGATTCAGATAGCAGTA+CGG + chr1_2:11508814-11508833 Msa0056030:CDS 35.0%
ATGATGAGAAAACAGGTAGA+AGG + chr1_2:11508837-11508856 Msa0056030:CDS 35.0%
ATCAGATTCATCACTACTGT+CGG - chr1_2:11508882-11508901 None:intergenic 35.0%
! ATTCTGATAGTGATGCTAAG+AGG + chr1_2:11508900-11508919 Msa0056030:CDS 35.0%
! TGATTTCTCTTCTGATAGTG+AGG + chr1_2:11508997-11509016 Msa0056030:CDS 35.0%
AAAAGGGAAAAATAGTGCCA+AGG + chr1_2:11509468-11509487 Msa0056030:CDS 35.0%
AAAAATAGTGCCAAGGTTGA+TGG + chr1_2:11509475-11509494 Msa0056030:CDS 35.0%
!! CTAAGAATGATGGACAAGAT+AGG + chr1_2:11509629-11509648 Msa0056030:CDS 35.0%
!! ATGGTTATTCTAAAGCAGCT+AGG + chr1_2:11509716-11509735 Msa0056030:CDS 35.0%
AATGAAACTTCTGATCAGAG+AGG + chr1_2:11509754-11509773 Msa0056030:CDS 35.0%
AGAGAGGCAGAAATTATAAC+AGG + chr1_2:11509770-11509789 Msa0056030:CDS 35.0%
GAGAGGCAGAAATTATAACA+GGG + chr1_2:11509771-11509790 Msa0056030:CDS 35.0%
GATGTTGAATCACAATCTGT+TGG + chr1_2:11509793-11509812 Msa0056030:CDS 35.0%
AATCTGTTGGACGAATTGAT+CGG + chr1_2:11509806-11509825 Msa0056030:CDS 35.0%
GGATTATGAAACAAGAAGGA+AGG + chr1_2:11509837-11509856 Msa0056030:CDS 35.0%
! CAAGAGATGGAAAGCATAAA+AGG + chr1_2:11509935-11509954 Msa0056030:CDS 35.0%
AAGGATGAAGATTATCCTAC+AGG + chr1_2:11510027-11510046 Msa0056030:CDS 35.0%
AAGAAAGATCAGAAGGATTG+AGG + chr1_2:11510086-11510105 Msa0056030:CDS 35.0%
AAGAAAGAACTTAAGGGATG+AGG + chr1_2:11510158-11510177 Msa0056030:CDS 35.0%
AGAAAGAACTTAAGGGATGA+GGG + chr1_2:11510159-11510178 Msa0056030:CDS 35.0%
TAGAGAAAGAAAGAACTCTC+TGG + chr1_2:11510188-11510207 Msa0056030:CDS 35.0%
!! GAGAAAAGAAGCTCTAAAGA+TGG + chr1_2:11510228-11510247 Msa0056030:CDS 35.0%
!! GAAAAGAAGCTCTAAAGATG+GGG + chr1_2:11510230-11510249 Msa0056030:CDS 35.0%
ATGGGGATGATTATGAAGAA+AGG + chr1_2:11510247-11510266 Msa0056030:CDS 35.0%
ATGGAGAAAGAAAGAGCTTA+AGG + chr1_2:11510331-11510350 Msa0056030:CDS 35.0%
TGGAGAAAGAAAGAGCTTAA+GGG + chr1_2:11510332-11510351 Msa0056030:CDS 35.0%
!! TTGGAGAAAGAAAGCACTTA+AGG + chr1_2:11510508-11510527 Msa0056030:CDS 35.0%
!! TGGAGAAAGAAAGCACTTAA+GGG + chr1_2:11510509-11510528 Msa0056030:CDS 35.0%
! ATAGAGAAGCACAAAACAGA+AGG + chr1_2:11510544-11510563 Msa0056030:CDS 35.0%
! TAGAGAAGCACAAAACAGAA+GGG + chr1_2:11510545-11510564 Msa0056030:CDS 35.0%
CAAAGAAAGGAAGAACTCAA+GGG + chr1_2:11510617-11510636 Msa0056030:CDS 35.0%
GCAAAGAAAGAAAGAACTCA+AGG + chr1_2:11510652-11510671 Msa0056030:CDS 35.0%
! GATGATGATGATGATGATGA+TGG + chr1_2:11510783-11510802 Msa0056030:CDS 35.0%
!! GAGAAAGAAGGCATTATAGA+AGG + chr1_2:11510811-11510830 Msa0056030:CDS 35.0%
AGAGCGGGAAAATAAAGTAA+AGG + chr1_2:11510875-11510894 Msa0056030:three_prime_UTR 35.0%
AGCATGAAAACCAAATACTG+TGG + chr1_2:11510966-11510985 Msa0056030:three_prime_UTR 35.0%
!! ATTTCAAGTTGAGTTCCAAC+TGG + chr1_2:11511089-11511108 Msa0056030:three_prime_UTR 35.0%
! TTCCAACTGGTCAATTTTGT+TGG + chr1_2:11511102-11511121 Msa0056030:three_prime_UTR 35.0%
CTGTCATTCATGAAAATAGC+AGG - chr1_2:11511182-11511201 None:intergenic 35.0%
TTCAAGCGTAGAACACGAAA+GGG - chr1_2:11506609-11506628 None:intergenic 40.0%
ATTCAAGCGTAGAACACGAA+AGG - chr1_2:11506610-11506629 None:intergenic 40.0%
GTCGCGAACAATATGTACAA+CGG + chr1_2:11506753-11506772 Msa0056030:exon 40.0%
! GTTGCTTTGAATGTACCCAT+TGG - chr1_2:11506811-11506830 None:intergenic 40.0%
! TACTGCTGGTGTTAGTAGAA+AGG + chr1_2:11506899-11506918 Msa0056030:CDS 40.0%
GATTGATCAGGGTTATACTG+AGG + chr1_2:11506995-11507014 Msa0056030:CDS 40.0%
TTATACTGAGGCTGAGATTG+CGG + chr1_2:11507007-11507026 Msa0056030:CDS 40.0%
CGATGCTCTCTATGAATTGT+TGG + chr1_2:11507193-11507212 Msa0056030:intron 40.0%
CGATGCTCTCTATGTATTGT+TGG + chr1_2:11507324-11507343 Msa0056030:intron 40.0%
! TCACTTTCGATGAGAAGTGT+GGG + chr1_2:11507465-11507484 Msa0056030:intron 40.0%
GTCTGTGGGTTTGAATTAAG+TGG + chr1_2:11507503-11507522 Msa0056030:intron 40.0%
!! TTGTGTGTGATTTTAGAGGC+TGG + chr1_2:11507643-11507662 Msa0056030:intron 40.0%
AGTTTCAGGGGGTAATGTTA+AGG + chr1_2:11507680-11507699 Msa0056030:intron 40.0%
GTTTCAGGGGGTAATGTTAA+GGG + chr1_2:11507681-11507700 Msa0056030:intron 40.0%
! TTCCTGAGGGTATGTTTAGA+TGG + chr1_2:11507842-11507861 Msa0056030:intron 40.0%
! TGAGGGTATGTTTAGATGGA+GGG + chr1_2:11507846-11507865 Msa0056030:intron 40.0%
CAAACCCACAGACTAAAACT+CGG - chr1_2:11507984-11508003 None:intergenic 40.0%
GTCTGTGGGTTTGAATTAAG+TGG + chr1_2:11507503-11507522 Msa0056030:intron 40.0%
TCACCAAATTGCTGCTAGAA+AGG + chr1_2:11508505-11508524 Msa0056030:CDS 40.0%
GAAACATTGAAAGCTGCTCT+TGG + chr1_2:11508539-11508558 Msa0056030:CDS 40.0%
TACAGATGGGAATGATGAAG+GGG + chr1_2:11508589-11508608 Msa0056030:CDS 40.0%
CTGTCCAAAAAGGAATGTTC+AGG - chr1_2:11508668-11508687 None:intergenic 40.0%
! AACTCCCAAGAGAAAGTACA+AGG + chr1_2:11508784-11508803 Msa0056030:CDS 40.0%
AGTACGGATGATGAGAAAAC+AGG + chr1_2:11508830-11508849 Msa0056030:CDS 40.0%
! TGATAGTGATGCTAAGAGGA+AGG + chr1_2:11508904-11508923 Msa0056030:CDS 40.0%
AACCAGTAAAGGCTAGTAAG+AGG + chr1_2:11509050-11509069 Msa0056030:CDS 40.0%
! AGTAAGAGGCATGATTCAGA+TGG + chr1_2:11509064-11509083 Msa0056030:CDS 40.0%
GGAGATTCTGATCATCATGA+AGG + chr1_2:11509085-11509104 Msa0056030:CDS 40.0%
CAAACATCATGATTCCGAAG+AGG + chr1_2:11509156-11509175 Msa0056030:CDS 40.0%
ATCAGCATCAGATTCCTCTT+CGG - chr1_2:11509173-11509192 None:intergenic 40.0%
GATAGTGAGGAAGAGAAACA+TGG + chr1_2:11509190-11509209 Msa0056030:CDS 40.0%
GACTTGAGAAGCAGAAAACT+AGG + chr1_2:11509215-11509234 Msa0056030:CDS 40.0%
TTGAGAAGCAGAAAACTAGG+AGG + chr1_2:11509218-11509237 Msa0056030:CDS 40.0%
AAGCAGAAAACTAGGAGGTA+TGG + chr1_2:11509223-11509242 Msa0056030:CDS 40.0%
! AGTAGCAGTGATAGTGAAAC+TGG + chr1_2:11509340-11509359 Msa0056030:CDS 40.0%
! CTGTCGTTTATTTCCTCCTT+TGG - chr1_2:11509433-11509452 None:intergenic 40.0%
AAGGAGGAAATAAACGACAG+AGG + chr1_2:11509433-11509452 Msa0056030:CDS 40.0%
AGAATCCAATCCATCAACCT+TGG - chr1_2:11509488-11509507 None:intergenic 40.0%
GATGGACAAGATAGGAAGTT+TGG + chr1_2:11509637-11509656 Msa0056030:CDS 40.0%
TTGGACGAATTGATCGGAAT+AGG + chr1_2:11509812-11509831 Msa0056030:CDS 40.0%
TGGACGAATTGATCGGAATA+GGG + chr1_2:11509813-11509832 Msa0056030:CDS 40.0%
GGGAGGATTATGAAACAAGA+AGG + chr1_2:11509833-11509852 Msa0056030:CDS 40.0%
! TTAAGCTTTTCTTCTCCCGT+CGG - chr1_2:11509972-11509991 None:intergenic 40.0%
TTAAGAGATGAAGATGGTCG+TGG + chr1_2:11509988-11510007 Msa0056030:CDS 40.0%
!! TACAGGAAGAAAGCACTTGA+GGG + chr1_2:11510044-11510063 Msa0056030:CDS 40.0%
TTGAGGGATGAAGATGATCA+CGG + chr1_2:11510060-11510079 Msa0056030:CDS 40.0%
ACGGAGAAAGAAAGATCAGA+AGG + chr1_2:11510079-11510098 Msa0056030:CDS 40.0%
GAAAGAAAGAACTCTCTGGA+TGG + chr1_2:11510192-11510211 Msa0056030:CDS 40.0%
! TAGAGCTTCTTTTCTCTCCA+CGG - chr1_2:11510224-11510243 None:intergenic 40.0%
GAAAGGAAGAACTTAAGGGA+TGG + chr1_2:11510264-11510283 Msa0056030:CDS 40.0%
AAGAACTTAAGGGATGGCAA+TGG + chr1_2:11510270-11510289 Msa0056030:CDS 40.0%
AAGAAAGAGCTTAAGGGATG+AGG + chr1_2:11510338-11510357 Msa0056030:CDS 40.0%
AGAAAGAGCTTAAGGGATGA+GGG + chr1_2:11510339-11510358 Msa0056030:CDS 40.0%
GAGGAGAAAGAAAGAACTCT+CGG + chr1_2:11510367-11510386 Msa0056030:CDS 40.0%
AGGAGAAAGAAAGAACTCTC+GGG + chr1_2:11510368-11510387 Msa0056030:CDS 40.0%
AACAAAGACTAGAAGGATCG+AGG + chr1_2:11510443-11510462 Msa0056030:CDS 40.0%
TACAGGAAGAAAGACCTTGA+GGG + chr1_2:11510473-11510492 Msa0056030:CDS 40.0%
AAAATCGTCTTCATCCCTCA+AGG - chr1_2:11510490-11510509 None:intergenic 40.0%
! TTGAGGGATGAAGACGATTT+TGG + chr1_2:11510489-11510508 Msa0056030:CDS 40.0%
!! AAGAAAGCACTTAAGGGATG+AGG + chr1_2:11510515-11510534 Msa0056030:CDS 40.0%
!! AGAAAGCACTTAAGGGATGA+GGG + chr1_2:11510516-11510535 Msa0056030:CDS 40.0%
AAGCACAAAACAGAAGGGAT+GGG + chr1_2:11510550-11510569 Msa0056030:CDS 40.0%
ATGAGGATGATCGCAAAGAA+AGG + chr1_2:11510604-11510623 Msa0056030:CDS 40.0%
GCAAAGAAAGGAAGAACTCA+AGG + chr1_2:11510616-11510635 Msa0056030:CDS 40.0%
TATCATGGAGAAAGAAAGCG+CGG + chr1_2:11510756-11510775 Msa0056030:CDS 40.0%
!! GATGATGATGATGATGGTCA+TGG + chr1_2:11510789-11510808 Msa0056030:CDS 40.0%
ATGATGGTCATGGAGAAAGA+AGG + chr1_2:11510799-11510818 Msa0056030:CDS 40.0%
TATAGAAGGGATGATGATCG+TGG + chr1_2:11510825-11510844 Msa0056030:CDS 40.0%
TCTTACTGGACCACAGTATT+TGG - chr1_2:11510979-11510998 None:intergenic 40.0%
AAATACTGTGGTCCAGTAAG+AGG + chr1_2:11510978-11510997 Msa0056030:three_prime_UTR 40.0%
AATACTGTGGTCCAGTAAGA+GGG + chr1_2:11510979-11510998 Msa0056030:three_prime_UTR 40.0%
CACCAACAAAATTGACCAGT+TGG - chr1_2:11511107-11511126 None:intergenic 40.0%
CGCGTTCGAAATCGATAAAG+CGG - chr1_2:11506490-11506509 None:intergenic 45.0%
TCAGCAACCTTCGAAGTTCT+CGG - chr1_2:11506849-11506868 None:intergenic 45.0%
TTCTTGAGCATGACCGAAAG+CGG + chr1_2:11506934-11506953 Msa0056030:CDS 45.0%
TGAAGAGGCGAGGAATAACT+TGG + chr1_2:11507037-11507056 Msa0056030:CDS 45.0%
CTCACTTTCGATGAGAAGTG+TGG + chr1_2:11507464-11507483 Msa0056030:intron 45.0%
!! GGTTAGTTTCATGTTAGGGG+CGG + chr1_2:11507524-11507543 Msa0056030:intron 45.0%
! TTTTTGTCAGAAGAGTCCCG+TGG - chr1_2:11507568-11507587 None:intergenic 45.0%
GGTAATGTTAAGGGCCCATT+TGG + chr1_2:11507690-11507709 Msa0056030:intron 45.0%
CTCCATCTAAACATACCCTC+AGG - chr1_2:11507847-11507866 None:intergenic 45.0%
! CTGAGGGTATGTTTAGATGG+AGG + chr1_2:11507845-11507864 Msa0056030:intron 45.0%
TTTAGATGGAGGGTTTAGGG+CGG + chr1_2:11507856-11507875 Msa0056030:intron 45.0%
TGTGTCAGTGTTGTGTACAC+AGG + chr1_2:11507928-11507947 Msa0056030:intron 45.0%
!! TGCTACCGAGTTTTAGTCTG+TGG + chr1_2:11507976-11507995 Msa0056030:intron 45.0%
!! GCTACCGAGTTTTAGTCTGT+GGG + chr1_2:11507977-11507996 Msa0056030:intron 45.0%
! TTTTTGTCAGAAGAGTCCCG+TGG - chr1_2:11507568-11507587 None:intergenic 45.0%
CAGTCGGAAGAAACAATTGG+AGG + chr1_2:11508694-11508713 Msa0056030:CDS 45.0%
! AGACACAAAGTGCCACAAGA+AGG + chr1_2:11508757-11508776 Msa0056030:CDS 45.0%
! GACACAAAGTGCCACAAGAA+GGG + chr1_2:11508758-11508777 Msa0056030:CDS 45.0%
TGATGCTAAGAGGAAGGTCA+AGG + chr1_2:11508910-11508929 Msa0056030:CDS 45.0%
! ACATCTAAGCACCGCAAGAA+AGG + chr1_2:11508950-11508969 Msa0056030:CDS 45.0%
!! TGCCTCTTACTAGCCTTTAC+TGG - chr1_2:11509055-11509074 None:intergenic 45.0%
! GTAGGACTAGTGAAGTGAAG+AGG + chr1_2:11509119-11509138 Msa0056030:CDS 45.0%
! GGAATCTGATGCTGATAGTG+AGG + chr1_2:11509177-11509196 Msa0056030:CDS 45.0%
! GAGGTATGGCTCTATTGATG+CGG + chr1_2:11509237-11509256 Msa0056030:CDS 45.0%
ATCACTGCTACTCTCATCAG+AGG - chr1_2:11509332-11509351 None:intergenic 45.0%
! AGTGATAGTGATCGCAGGTA+TGG + chr1_2:11509367-11509386 Msa0056030:CDS 45.0%
AGAGGTAATGCTGCAGGAAA+AGG + chr1_2:11509451-11509470 Msa0056030:CDS 45.0%
GAGGTAATGCTGCAGGAAAA+GGG + chr1_2:11509452-11509471 Msa0056030:CDS 45.0%
!! TAGTGCCAAGGTTGATGGAT+TGG + chr1_2:11509480-11509499 Msa0056030:CDS 45.0%
! TCTAAAGCAGCTAGGATCAG+AGG + chr1_2:11509724-11509743 Msa0056030:CDS 45.0%
CTAAAGCAGCTAGGATCAGA+GGG + chr1_2:11509725-11509744 Msa0056030:CDS 45.0%
ACGAATTGATCGGAATAGGG+AGG + chr1_2:11509816-11509835 Msa0056030:CDS 45.0%
! TGGAAAGCATAAAAGGGACG+AGG + chr1_2:11509942-11509961 Msa0056030:CDS 45.0%
CTCAAGTGCTTTCTTCCTGT+AGG - chr1_2:11510045-11510064 None:intergenic 45.0%
!! CTACAGGAAGAAAGCACTTG+AGG + chr1_2:11510043-11510062 Msa0056030:CDS 45.0%
ATAATCATCCCCATCCCTCA+AGG - chr1_2:11510133-11510152 None:intergenic 45.0%
TTGAGGGATGGGGATGATTA+TGG + chr1_2:11510132-11510151 Msa0056030:CDS 45.0%
AAGAACTTAAGGGATGAGGG+TGG + chr1_2:11510162-11510181 Msa0056030:CDS 45.0%
! TAGAGCTCCTTTTCTCTCCA+CGG - chr1_2:11510296-11510315 None:intergenic 45.0%
TGGAGAGAAAAGGAGCTCTA+GGG + chr1_2:11510296-11510315 Msa0056030:CDS 45.0%
!! AGAAAAGGAGCTCTAGGGAT+GGG + chr1_2:11510301-11510320 Msa0056030:CDS 45.0%
TCTAGGGATGGGGATGATTA+TGG + chr1_2:11510312-11510331 Msa0056030:CDS 45.0%
GAAAGAAAGAACTCTCGGGA+TGG + chr1_2:11510372-11510391 Msa0056030:CDS 45.0%
GTACAGGAAGAAAGACCTTG+AGG + chr1_2:11510472-11510491 Msa0056030:CDS 45.0%
GAAGCACAAAACAGAAGGGA+TGG + chr1_2:11510549-11510568 Msa0056030:CDS 45.0%
AGCACAAAACAGAAGGGATG+GGG + chr1_2:11510551-11510570 Msa0056030:CDS 45.0%
AAGGAAGAACTCAAGGGAAG+AGG + chr1_2:11510623-11510642 Msa0056030:CDS 45.0%
ACAGAGAGAGAAAGAGCTCA+AGG + chr1_2:11510688-11510707 Msa0056030:CDS 45.0%
CAGAGAGAGAAAGAGCTCAA+GGG + chr1_2:11510689-11510708 Msa0056030:CDS 45.0%
AGAGGGGATGATGAGTATCA+TGG + chr1_2:11510741-11510760 Msa0056030:CDS 45.0%
! TGGAGAAAGGAAGCACAGAA+GGG + chr1_2:11510845-11510864 Msa0056030:CDS 45.0%
! ATACCGACTATCCCTCTTAC+TGG - chr1_2:11510993-11511012 None:intergenic 45.0%
!!! TAATTTTCTTAAATTATTAT+TGG - chr1_2:11507265-11507284 None:intergenic 5.0%
!!! TAATTTTCTTAAATTATTAT+TGG - chr1_2:11507265-11507284 None:intergenic 5.0%
ATCGGGTTACAAACCCCAAG+AGG + chr1_2:11506777-11506796 Msa0056030:CDS 50.0%
TCGGGTTACAAACCCCAAGA+GGG + chr1_2:11506778-11506797 Msa0056030:CDS 50.0%
TTACAAACCCCAAGAGGGTC+TGG + chr1_2:11506783-11506802 Msa0056030:CDS 50.0%
ATTGGTACCAGACCCTCTTG+GGG - chr1_2:11506793-11506812 None:intergenic 50.0%
CATTGGTACCAGACCCTCTT+GGG - chr1_2:11506794-11506813 None:intergenic 50.0%
CAAGAGGGTCTGGTACCAAT+GGG + chr1_2:11506793-11506812 Msa0056030:CDS 50.0%
AAGGGGTTTGAGGGAGATCA+AGG + chr1_2:11506876-11506895 Msa0056030:CDS 50.0%
!! TCAGCTGAATCTGCCGCTTT+CGG - chr1_2:11506950-11506969 None:intergenic 50.0%
GATTGCGGAGAAGCTTGAAG+AGG + chr1_2:11507022-11507041 Msa0056030:CDS 50.0%
AGAGGCGAGGAATAACTTGG+AGG + chr1_2:11507040-11507059 Msa0056030:CDS 50.0%
GCTGCAGCTGATGAAAACGA+TGG + chr1_2:11507062-11507081 Msa0056030:CDS 50.0%
! TTCGATGAGAAGTGTGGGTG+CGG + chr1_2:11507470-11507489 Msa0056030:intron 50.0%
! TGCGGCAGAGTTTTTGTCTG+TGG + chr1_2:11507488-11507507 Msa0056030:intron 50.0%
! GCGGCAGAGTTTTTGTCTGT+GGG + chr1_2:11507489-11507508 Msa0056030:intron 50.0%
! TTAGATGGAGGGTTTAGGGC+GGG + chr1_2:11507857-11507876 Msa0056030:intron 50.0%
TCGCCTTCGATGTGAAGTGT+GGG + chr1_2:11507953-11507972 Msa0056030:intron 50.0%
ATGAAGGGGCTGGAAACGAA+GGG + chr1_2:11508603-11508622 Msa0056030:CDS 50.0%
! ACAAAGTGCCACAAGAAGGG+TGG + chr1_2:11508761-11508780 Msa0056030:CDS 50.0%
! TAAGCACCGCAAGAAAGGCA+GGG + chr1_2:11508955-11508974 Msa0056030:CDS 50.0%
ACTTCACTAGTCCTACGCCT+GGG - chr1_2:11509115-11509134 None:intergenic 50.0%
ATTGATGCGGACTCTGGTAG+AGG + chr1_2:11509250-11509269 Msa0056030:CDS 50.0%
ACTCTGGTAGAGGCAGTGTT+AGG + chr1_2:11509260-11509279 Msa0056030:CDS 50.0%
AGCGAAGAGAAGTGAGCCAA+AGG + chr1_2:11509414-11509433 Msa0056030:CDS 50.0%
GAAGAGAAGTGAGCCAAAGG+AGG + chr1_2:11509417-11509436 Msa0056030:CDS 50.0%
AACGACAGAGGTAATGCTGC+AGG + chr1_2:11509445-11509464 Msa0056030:CDS 50.0%
AAGATGGTCGTGGAGAGAGA+AGG + chr1_2:11509998-11510017 Msa0056030:CDS 50.0%
! TGGAGAGAGAAGGCATGGAA+AGG + chr1_2:11510008-11510027 Msa0056030:CDS 50.0%
AGGATTGAGGATGAACGTGC+AGG + chr1_2:11510099-11510118 Msa0056030:CDS 50.0%
TTGAGGATGAACGTGCAGGA+AGG + chr1_2:11510103-11510122 Msa0056030:CDS 50.0%
TGCAGGAAGGAAGACCTTGA+GGG + chr1_2:11510116-11510135 Msa0056030:CDS 50.0%
GAAGGAAGACCTTGAGGGAT+GGG + chr1_2:11510121-11510140 Msa0056030:CDS 50.0%
AAGGAAGACCTTGAGGGATG+GGG + chr1_2:11510122-11510141 Msa0056030:CDS 50.0%
GTGGAGAGAAAAGGAGCTCT+AGG + chr1_2:11510295-11510314 Msa0056030:CDS 50.0%
!! GAGAAAAGGAGCTCTAGGGA+TGG + chr1_2:11510300-11510319 Msa0056030:CDS 50.0%
!! GAAAAGGAGCTCTAGGGATG+GGG + chr1_2:11510302-11510321 Msa0056030:CDS 50.0%
AAGAGCTTAAGGGATGAGGG+TGG + chr1_2:11510342-11510361 Msa0056030:CDS 50.0%
AAGAACTCTCGGGATGGTGA+TGG + chr1_2:11510378-11510397 Msa0056030:CDS 50.0%
!! AGAGAAGAGCTCTAGGGATG+TGG + chr1_2:11510407-11510426 Msa0056030:CDS 50.0%
!! GAGAAGAGCTCTAGGGATGT+GGG + chr1_2:11510408-11510427 Msa0056030:CDS 50.0%
AGGATCGAGGATGATCGTAC+AGG + chr1_2:11510456-11510475 Msa0056030:CDS 50.0%
CAAAACAGAAGGGATGGGGA+TGG + chr1_2:11510555-11510574 Msa0056030:CDS 50.0%
GAGAAAGAGCTCAAGGGATG+AGG + chr1_2:11510695-11510714 Msa0056030:CDS 50.0%
TCAAGGGATGAGGATGTTCG+TGG + chr1_2:11510705-11510724 Msa0056030:CDS 50.0%
CAAGGGATGAGGATGTTCGT+GGG + chr1_2:11510706-11510725 Msa0056030:CDS 50.0%
AAGGGATGAGGATGTTCGTG+GGG + chr1_2:11510707-11510726 Msa0056030:CDS 50.0%
! GTGGGGAAAGAAAGCACAGA+GGG + chr1_2:11510724-11510743 Msa0056030:CDS 50.0%
! TGGGGAAAGAAAGCACAGAG+GGG + chr1_2:11510725-11510744 Msa0056030:CDS 50.0%
! ATGGAGAAAGAAAGCGCGGA+AGG + chr1_2:11510760-11510779 Msa0056030:CDS 50.0%
! TGGAGAAAGAAAGCGCGGAA+GGG + chr1_2:11510761-11510780 Msa0056030:CDS 50.0%
GGGATGATGATCGTGGAGAA+AGG + chr1_2:11510832-11510851 Msa0056030:CDS 50.0%
! GTGGAGAAAGGAAGCACAGA+AGG + chr1_2:11510844-11510863 Msa0056030:CDS 50.0%
! AAGGAAGCACAGAAGGGAGT+AGG + chr1_2:11510851-11510870 Msa0056030:CDS 50.0%
ACAGAAGGGAGTAGGAAGAG+CGG + chr1_2:11510859-11510878 Msa0056030:exon 50.0%
GGTCCAGTAAGAGGGATAGT+CGG + chr1_2:11510987-11511006 Msa0056030:three_prime_UTR 50.0%
CCATTGGTACCAGACCCTCT+TGG - chr1_2:11506795-11506814 None:intergenic 55.0%
CCAAGAGGGTCTGGTACCAA+TGG + chr1_2:11506792-11506811 Msa0056030:CDS 55.0%
CGTGAAGCCGAGAACTTCGA+AGG + chr1_2:11506839-11506858 Msa0056030:CDS 55.0%
!! GAGGGAGATCAAGGTACTGC+TGG + chr1_2:11506885-11506904 Msa0056030:CDS 55.0%
CTCGCCTTCGATGTGAAGTG+TGG + chr1_2:11507952-11507971 Msa0056030:intron 55.0%
GCACCCACACTTCACATCGA+AGG - chr1_2:11507959-11507978 None:intergenic 55.0%
GATGGGAATGATGAAGGGGC+TGG + chr1_2:11508593-11508612 Msa0056030:CDS 55.0%
GATGAAGGGGCTGGAAACGA+AGG + chr1_2:11508602-11508621 Msa0056030:CDS 55.0%
TGGGAGTTCCACCCTTCTTG+TGG - chr1_2:11508772-11508791 None:intergenic 55.0%
! CTAAGCACCGCAAGAAAGGC+AGG + chr1_2:11508954-11508973 Msa0056030:CDS 55.0%
CATCCACCCTGCCTTTCTTG+CGG - chr1_2:11508964-11508983 None:intergenic 55.0%
! ATCATCATGAAGGCGTGCCC+AGG + chr1_2:11509095-11509114 Msa0056030:CDS 55.0%
CACTTCACTAGTCCTACGCC+TGG - chr1_2:11509116-11509135 None:intergenic 55.0%
GGCTCTATTGATGCGGACTC+TGG + chr1_2:11509244-11509263 Msa0056030:CDS 55.0%
GGCAGTGTTAGGCATGCTTC+AGG + chr1_2:11509271-11509290 Msa0056030:CDS 55.0%
! GCAGCAGTGATAGTGATCGC+AGG + chr1_2:11509362-11509381 Msa0056030:CDS 55.0%
AAAGGGACGAGGAAGACCGA+CGG + chr1_2:11509953-11509972 Msa0056030:CDS 55.0%
GTGCAGGAAGGAAGACCTTG+AGG + chr1_2:11510115-11510134 Msa0056030:CDS 55.0%
GGAAGGAAGACCTTGAGGGA+TGG + chr1_2:11510120-11510139 Msa0056030:CDS 55.0%
TCTCTGGATGGCAATGTCCG+TGG + chr1_2:11510204-11510223 Msa0056030:CDS 55.0%
TTAAGGGATGGCAATGGCCG+TGG + chr1_2:11510276-11510295 Msa0056030:CDS 55.0%
GCAATGGCCGTGGAGAGAAA+AGG + chr1_2:11510286-11510305 Msa0056030:CDS 55.0%
TTAAGGGATGAGGGTGGCAG+AGG + chr1_2:11510168-11510187 Msa0056030:CDS 55.0%
CCCTAGAGCTCTTCTCTCCT+CGG - chr1_2:11510404-11510423 None:intergenic 55.0%
CCGAGGAGAGAAGAGCTCTA+GGG + chr1_2:11510401-11510420 Msa0056030:CDS 55.0%
! CGTGGGGAAAGAAAGCACAG+AGG + chr1_2:11510723-11510742 Msa0056030:CDS 55.0%
CAGAAGGGAGTAGGAAGAGC+GGG + chr1_2:11510860-11510879 Msa0056030:exon 55.0%
CGGAGAAGCTTGAAGAGGCG+AGG + chr1_2:11507027-11507046 Msa0056030:CDS 60.0%
! ATGGAGGGTTTAGGGCGGGA+TGG + chr1_2:11507861-11507880 Msa0056030:intron 60.0%
AAGGGACGAGGAAGACCGAC+GGG + chr1_2:11509954-11509973 Msa0056030:CDS 60.0%
GGTCGTGGAGAGAGAAGGCA+TGG + chr1_2:11510003-11510022 Msa0056030:CDS 60.0%
GCCGAGGAGAGAAGAGCTCT+AGG + chr1_2:11510400-11510419 Msa0056030:CDS 60.0%
GCACCGCAAGAAAGGCAGGG+TGG + chr1_2:11508958-11508977 Msa0056030:CDS 65.0%
! ATGAAGGCGTGCCCAGGCGT+AGG + chr1_2:11509101-11509120 Msa0056030:CDS 65.0%
!! TCTCGGGATGGTGATGGCCG+AGG + chr1_2:11510384-11510403 Msa0056030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 11506394 11511223 11506394 ID=Msa0056030;Name=Msa0056030
chr1_2 mRNA 11506394 11511223 11506394 ID=Msa0056030-mRNA-1;Parent=Msa0056030;Name=Msa0056030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=168|1|1|1|0.5|0.33|3|351|906
chr1_2 exon 11506394 11506539 11506394 ID=Msa0056030-mRNA-1:exon:4356;Parent=Msa0056030-mRNA-1
chr1_2 exon 11506743 11507099 11506743 ID=Msa0056030-mRNA-1:exon:4357;Parent=Msa0056030-mRNA-1
chr1_2 exon 11508487 11511223 11508487 ID=Msa0056030-mRNA-1:exon:4358;Parent=Msa0056030-mRNA-1
chr1_2 five_prime_UTR 11506394 11506539 11506394 ID=Msa0056030-mRNA-1:five_prime_utr;Parent=Msa0056030-mRNA-1
chr1_2 five_prime_UTR 11506743 11506764 11506743 ID=Msa0056030-mRNA-1:five_prime_utr;Parent=Msa0056030-mRNA-1
chr1_2 CDS 11506765 11507099 11506765 ID=Msa0056030-mRNA-1:cds;Parent=Msa0056030-mRNA-1
chr1_2 CDS 11508487 11510872 11508487 ID=Msa0056030-mRNA-1:cds;Parent=Msa0056030-mRNA-1
chr1_2 three_prime_UTR 11510873 11511223 11510873 ID=Msa0056030-mRNA-1:three_prime_utr;Parent=Msa0056030-mRNA-1
Gene Sequence

>Msa0056030

ATGTACAACGGAATCGGGTTACAAACCCCAAGAGGGTCTGGTACCAATGGGTACATTCAAAGCAACAAATTCTTCGTGAAGCCGAGAACTTCGAAGGTTGCTGAAAATATGAAGGGGTTTGAGGGAGATCAAGGTACTGCTGGTGTTAGTAGAAAGGCTAATAAAGAGATTCTTGAGCATGACCGAAAGCGGCAGATTCAGCTGAAGCTTGTTATTCTTGAAGATAAGCTGATTGATCAGGGTTATACTGAGGCTGAGATTGCGGAGAAGCTTGAAGAGGCGAGGAATAACTTGGAGGCTGCAGCTGATGAAAACGATGGATCCAATATGGATAAGATTTCTGATACACAGAGTCACCAAATTGCTGCTAGAAAGGAAAAACAGATGGAAACATTGAAAGCTGCTCTTGGCATAATATCTGAAGCTGATGAATTAAATACAGATGGGAATGATGAAGGGGCTGGAAACGAAGGGAAAGATGTTTCTTTTGCTGATGCAAAACATATTTTGAAACCTGAACATTCCTTTTTGGACAGAGATTTCAGTCGGAAGAAACAATTGGAGGAAGTTCAAAAAGAAGAAACTACCAAGAAAAAGAGTGTTAAAGACACAAAGTGCCACAAGAAGGGTGGAACTCCCAAGAGAAAGTACAAGGATGATTCATCTGATTCAGATAGCAGTACGGATGATGAGAAAACAGGTAGAAGGAAGAACAGTAGAGTGAGTACCGACAGTAGTGATGAATCTGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGGCTAAAAAGAAGCAGAGCACATCTAAGCACCGCAAGAAAGGCAGGGTGGATGACAGTGATGATACTGATTTCTCTTCTGATAGTGAGGATAGCAAGAGTGCAAGAAAAAGTAATAAAAAACCAGTAAAGGCTAGTAAGAGGCATGATTCAGATGGAGATTCTGATCATCATGAAGGCGTGCCCAGGCGTAGGACTAGTGAAGTGAAGAGGCATGCAAAGACGAGCAAACATCATGATTCCGAAGAGGAATCTGATGCTGATAGTGAGGAAGAGAAACATGGTAGACTTGAGAAGCAGAAAACTAGGAGGTATGGCTCTATTGATGCGGACTCTGGTAGAGGCAGTGTTAGGCATGCTTCAGGACAAGACAAACATGTTAAAAGGCGGACATACTCTTCCTCTGATGAGAGTAGCAGTGATAGTGAAACTGGCAGCAGTGATAGTGATCGCAGGTATGGAAGAACTAGAAAAGTTGGGTCTGTAGCGAAGAGAAGTGAGCCAAAGGAGGAAATAAACGACAGAGGTAATGCTGCAGGAAAAGGGAAAAATAGTGCCAAGGTTGATGGATTGGATTCTTTAAGAAAATCATATGGGAGAGATTATAAAGAGGGTCCAGATTCTAGAAGTCAAACAATAGCTAAGGGTGAAAAGAAAATTGATGAAGATAGAGATAGAGATAGGGAGACTGTCAAATTTGCTAAGAATGATGGACAAGATAGGAAGTTTGGTAAAACAGAGTCTGAGTCAAAATCTCGAATTTATCAAAATGAAAATGAAGAAAGAGATGGTTATTCTAAAGCAGCTAGGATCAGAGGGAATGATAATGAAACTTCTGATCAGAGAGGCAGAAATTATAACAGGGATGTTGAATCACAATCTGTTGGACGAATTGATCGGAATAGGGAGGATTATGAAACAAGAAGGAAGGGAAGAAATGATAATGATTATAAAAGGGATCAGGATGACCATGAAGAAAAAAAACATGGAAGGAATGAAGATGATTCAAGAGATGGAAAGCATAAAAGGGACGAGGAAGACCGACGGGAGAAGAAAAGCTTAAGAGATGAAGATGGTCGTGGAGAGAGAAGGCATGGAAAGGATGAAGATTATCCTACAGGAAGAAAGCACTTGAGGGATGAAGATGATCACGGAGAAAGAAAGATCAGAAGGATTGAGGATGAACGTGCAGGAAGGAAGACCTTGAGGGATGGGGATGATTATGGAGAAAGAAAGAACTTAAGGGATGAGGGTGGCAGTAGAGAAAGAAAGAACTCTCTGGATGGCAATGTCCGTGGAGAGAAAAGAAGCTCTAAAGATGGGGATGATTATGAAGAAAGGAAGAACTTAAGGGATGGCAATGGCCGTGGAGAGAAAAGGAGCTCTAGGGATGGGGATGATTATGGAGAAAGAAAGAGCTTAAGGGATGAGGGTGGCAGAGGAGAAAGAAAGAACTCTCGGGATGGTGATGGCCGAGGAGAGAAGAGCTCTAGGGATGTGGGTGATCTTAGAGAAACAAAGACTAGAAGGATCGAGGATGATCGTACAGGAAGAAAGACCTTGAGGGATGAAGACGATTTTGGAGAAAGAAAGCACTTAAGGGATGAGGGTCGTCATAGAGAAGCACAAAACAGAAGGGATGGGGATGGCAGTGTAGAAATAAAGAACTCTAGGTATGAGGATGATCGCAAAGAAAGGAAGAACTCAAGGGAAGAGGATGACCGCAAAGAAAGAAAGAACTCAAGGGTAGATGATGATCACAGAGAGAGAAAGAGCTCAAGGGATGAGGATGTTCGTGGGGAAAGAAAGCACAGAGGGGATGATGAGTATCATGGAGAAAGAAAGCGCGGAAGGGATGATGATGATGATGATGATGGTCATGGAGAAAGAAGGCATTATAGAAGGGATGATGATCGTGGAGAAAGGAAGCACAGAAGGGAGTAG
Protein sequence

>Msa0056030

MYNGIGLQTPRGSGTNGYIQSNKFFVKPRTSKVAENMKGFEGDQGTAGVSRKANKEILEHDRKRQIQLKLVILEDKLIDQGYTEAEIAEKLEEARNNLEAAADENDGSNMDKISDTQSHQIAARKEKQMETLKAALGIISEADELNTDGNDEGAGNEGKDVSFADAKHILKPEHSFLDRDFSRKKQLEEVQKEETTKKKSVKDTKCHKKGGTPKRKYKDDSSDSDSSTDDEKTGRRKNSRVSTDSSDESDSDSDAKRKVKAKKKQSTSKHRKKGRVDDSDDTDFSSDSEDSKSARKSNKKPVKASKRHDSDGDSDHHEGVPRRRTSEVKRHAKTSKHHDSEEESDADSEEEKHGRLEKQKTRRYGSIDADSGRGSVRHASGQDKHVKRRTYSSSDESSSDSETGSSDSDRRYGRTRKVGSVAKRSEPKEEINDRGNAAGKGKNSAKVDGLDSLRKSYGRDYKEGPDSRSQTIAKGEKKIDEDRDRDRETVKFAKNDGQDRKFGKTESESKSRIYQNENEERDGYSKAARIRGNDNETSDQRGRNYNRDVESQSVGRIDRNREDYETRRKGRNDNDYKRDQDDHEEKKHGRNEDDSRDGKHKRDEEDRREKKSLRDEDGRGERRHGKDEDYPTGRKHLRDEDDHGERKIRRIEDERAGRKTLRDGDDYGERKNLRDEGGSRERKNSLDGNVRGEKRSSKDGDDYEERKNLRDGNGRGEKRSSRDGDDYGERKSLRDEGGRGERKNSRDGDGRGEKSSRDVGDLRETKTRRIEDDRTGRKTLRDEDDFGERKHLRDEGRHREAQNRRDGDGSVEIKNSRYEDDRKERKNSREEDDRKERKNSRVDDDHRERKSSRDEDVRGERKHRGDDEYHGERKRGRDDDDDDDGHGERRHYRRDDDRGERKHRRE*