Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0445130 | XP_039688223.1 | 95.322 | 342 | 14 | 1 | 1 | 340 | 1 | 342 | 0.0 | 644 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0445130 | A0A396IKZ4 | 95.322 | 342 | 14 | 1 | 1 | 340 | 1 | 342 | 0.0 | 644 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0397540 | Msa0445130 | 0.809005 | 2.342623e-50 | -8.615850e-47 |
Msa0445130 | Msa0798440 | 0.802505 | 5.435386e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0445130 | MtrunA17_Chr3g0085271 | 95.322 | 342 | 14 | 1 | 1 | 340 | 1 | 342 | 0.0 | 644 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0445130 | AT5G48240.1 | 45.538 | 325 | 143 | 8 | 16 | 339 | 18 | 309 | 4.93e-79 | 244 |
Msa0445130 | AT5G48240.3 | 42.391 | 368 | 139 | 8 | 16 | 339 | 18 | 356 | 2.92e-72 | 228 |
Msa0445130 | AT5G48240.2 | 44.898 | 294 | 120 | 7 | 16 | 308 | 18 | 270 | 1.44e-60 | 196 |
Find 114 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTATAGTAATAGACTATTTA+TGG | 0.119328 | 3_3:-18882712 | Msa0445130:three_prime_UTR |
TGTCACACCTGCTAATTATT+TGG | 0.128361 | 3_3:-18885325 | Msa0445130:CDS |
CGCTGAAAAGAAGGCTTCTT+TGG | 0.194609 | 3_3:+18883930 | None:intergenic |
CTTTATTATCCAATTGTATT+AGG | 0.230112 | 3_3:-18882746 | Msa0445130:three_prime_UTR |
ATAAAAGTTCCTCATCAAAA+TGG | 0.262718 | 3_3:+18882643 | None:intergenic |
TCAGTGAACAAATTCAAAAT+TGG | 0.269250 | 3_3:+18882801 | None:intergenic |
AATATCTCGTTTGAGTTGTT+AGG | 0.289962 | 3_3:+18888172 | None:intergenic |
TGTGGTGGCTTCATCACTTT+TGG | 0.308341 | 3_3:+18886093 | None:intergenic |
GTTTGAGTTGTTAGGGGTTA+AGG | 0.309508 | 3_3:+18888180 | None:intergenic |
CTTCATCGGAACTGCTATCT+TGG | 0.315922 | 3_3:+18882982 | None:intergenic |
GTGAAGGTTGTAAAGCATTC+AGG | 0.319257 | 3_3:-18885738 | Msa0445130:CDS |
GAGCTGGGAAAGAGGAAGTT+TGG | 0.319454 | 3_3:-18886150 | Msa0445130:CDS |
TTGAATTATAAAACAATTCA+TGG | 0.322795 | 3_3:-18886205 | Msa0445130:exon |
AGCAGTTCCGATGAAGATTA+AGG | 0.322931 | 3_3:-18882975 | Msa0445130:exon |
CTTCTTTATAATACTCTTGA+AGG | 0.329380 | 3_3:+18885711 | None:intergenic |
GAGAGGATGAACAACCTTCT+TGG | 0.339326 | 3_3:-18883178 | Msa0445130:CDS |
CTTTGCATCCCTGTTCTTTG+AGG | 0.339480 | 3_3:+18884961 | None:intergenic |
TCACTGAATTTAGTAATTCC+TGG | 0.358866 | 3_3:+18885757 | None:intergenic |
ATTATTTCGTCGTAGGGTAT+TGG | 0.363471 | 3_3:-18882606 | Msa0445130:three_prime_UTR |
GGCTGGACCCCTCAAAGAAC+AGG | 0.375162 | 3_3:-18884970 | Msa0445130:CDS |
TTCTGCTACCCCTTCATCTT+CGG | 0.376152 | 3_3:+18885864 | None:intergenic |
TTTGCATCCCTGTTCTTTGA+GGG | 0.379386 | 3_3:+18884962 | None:intergenic |
ATGGCTGATTGGCTGGCCTT+TGG | 0.383693 | 3_3:-18882834 | Msa0445130:three_prime_UTR |
GCTGACAAGTTCGAGAATAA+AGG | 0.387185 | 3_3:-18883132 | Msa0445130:CDS |
CTTGTTACAGCTAGCAGAAA+AGG | 0.390626 | 3_3:-18885352 | Msa0445130:intron |
TCCCTTGTTTGTGCTTGCAT+TGG | 0.391353 | 3_3:+18883199 | None:intergenic |
TTCATCATGTTCAGTAACTT+TGG | 0.395085 | 3_3:+18882777 | None:intergenic |
TTTGAGTTGTTAGGGGTTAA+GGG | 0.401318 | 3_3:+18888181 | None:intergenic |
AATCATATTCCTAATACAAT+TGG | 0.407003 | 3_3:+18882737 | None:intergenic |
ATATCTCGTTTGAGTTGTTA+GGG | 0.411012 | 3_3:+18888173 | None:intergenic |
TGTAAAGTTTCTTCATTTGT+TGG | 0.412234 | 3_3:+18886046 | None:intergenic |
GTCGGAGCAGTGACAGCGGC+TGG | 0.416903 | 3_3:+18888140 | None:intergenic |
AGTAACGTAATGAGCAGAAA+TGG | 0.420863 | 3_3:+18882881 | None:intergenic |
CTTATAAGTGTCGCGACAAA+AGG | 0.425927 | 3_3:-18885285 | Msa0445130:CDS |
AAACTTGATGGCTGATTGGC+TGG | 0.426019 | 3_3:-18882841 | Msa0445130:three_prime_UTR |
GGAGACAGAGCGCAAGATCA+AGG | 0.426021 | 3_3:-18885532 | Msa0445130:CDS |
CTCATTACGTTACTAAAGAA+TGG | 0.426920 | 3_3:-18882872 | Msa0445130:three_prime_UTR |
GAGACAACTGCCCCTGCTAC+TGG | 0.429501 | 3_3:-18885982 | Msa0445130:CDS |
GGAGAAACTTGATGGCTGAT+TGG | 0.433716 | 3_3:-18882845 | Msa0445130:three_prime_UTR |
CGTGTTTCTAGTGGGATAAT+CGG | 0.434301 | 3_3:-18882925 | Msa0445130:three_prime_UTR |
AGAGGATGAACAACCTTCTT+GGG | 0.435774 | 3_3:-18883177 | Msa0445130:CDS |
ACGTTACTAAAGAATGGAAT+TGG | 0.440530 | 3_3:-18882866 | Msa0445130:three_prime_UTR |
GCGTTAGGGAAGCCAGCTAT+TGG | 0.445925 | 3_3:-18883910 | Msa0445130:CDS |
TTCATCGGAACTGCTATCTT+GGG | 0.454720 | 3_3:+18882983 | None:intergenic |
TAAAAGTTCCTCATCAAAAT+GGG | 0.455210 | 3_3:+18882644 | None:intergenic |
ATCACCTTTGCACCAATAGC+TGG | 0.456798 | 3_3:+18883898 | None:intergenic |
ATGGAAGTGAGCTGGGAAAG+AGG | 0.457388 | 3_3:-18886158 | Msa0445130:CDS |
CAAGTTCGAGAATAAAGGAT+TGG | 0.462911 | 3_3:-18883127 | Msa0445130:CDS |
TTCAAAACCTTAATCTTCAT+CGG | 0.464287 | 3_3:+18882968 | None:intergenic |
CCGAAAAGTAATCGAAAGCT+TGG | 0.464465 | 3_3:-18882681 | Msa0445130:three_prime_UTR |
AGTTGTTAGGGGTTAAGGGA+AGG | 0.474131 | 3_3:+18888185 | None:intergenic |
GTTGTTAGGGGTTAAGGGAA+GGG | 0.474680 | 3_3:+18888186 | None:intergenic |
CTTCTAGTACTCCCAGTAGC+AGG | 0.475505 | 3_3:+18885970 | None:intergenic |
GAGTGTTTCTGATGAGTTGT+TGG | 0.478230 | 3_3:-18885689 | Msa0445130:intron |
ATGGAATTGGAGAAACTTGA+TGG | 0.484582 | 3_3:-18882853 | Msa0445130:three_prime_UTR |
CTTCCCTAACGCTGAAAAGA+AGG | 0.488467 | 3_3:+18883921 | None:intergenic |
AAAGCTCAAGTTGCTCAGAA+AGG | 0.489370 | 3_3:-18884992 | Msa0445130:CDS |
TTCTTGTGATCTGACAATAC+TGG | 0.489621 | 3_3:+18885582 | None:intergenic |
TTTAGTATTATTTCGTCGTA+GGG | 0.489691 | 3_3:-18882612 | Msa0445130:three_prime_UTR |
TGAACAAATTCAAAATTGGT+TGG | 0.491540 | 3_3:+18882805 | None:intergenic |
AATTGGTTGGTTTATACCAA+AGG | 0.494286 | 3_3:+18882818 | None:intergenic |
ATTTAGTATTATTTCGTCGT+AGG | 0.496791 | 3_3:-18882613 | Msa0445130:three_prime_UTR |
AAGCTCAAGTTGCTCAGAAA+GGG | 0.498953 | 3_3:-18884991 | Msa0445130:CDS |
AGCATATAATTATCGCGTAA+TGG | 0.502059 | 3_3:+18883152 | None:intergenic |
AAGTTCGAGAATAAAGGATT+GGG | 0.504352 | 3_3:-18883126 | Msa0445130:CDS |
TATAGAAAAGCTCGCGGAAG+AGG | 0.510403 | 3_3:-18885553 | Msa0445130:CDS |
CTCAAAGAACAGGGATGCAA+AGG | 0.511691 | 3_3:-18884960 | Msa0445130:CDS |
GAAGATCTATCCGAAGATGA+AGG | 0.518592 | 3_3:-18885874 | Msa0445130:CDS |
TTGCATCCCTGTTCTTTGAG+GGG | 0.522520 | 3_3:+18884963 | None:intergenic |
GAGGAGGATGAGATTCAGCC+AGG | 0.523349 | 3_3:-18885775 | Msa0445130:CDS |
TTGTTACAGCTAGCAGAAAA+GGG | 0.523614 | 3_3:-18885351 | Msa0445130:intron |
TACCAGATGCTGAAAAGAAA+CGG | 0.524919 | 3_3:+18888040 | None:intergenic |
TTCTAGTACTCCCAGTAGCA+GGG | 0.533288 | 3_3:+18885971 | None:intergenic |
AGACAACTGCCCCTGCTACT+GGG | 0.534405 | 3_3:-18885981 | Msa0445130:CDS |
GGCCAATGCAAGCACAAACA+AGG | 0.534686 | 3_3:-18883201 | Msa0445130:CDS |
TGCGCGTCCAAATAATTAGC+AGG | 0.542869 | 3_3:+18885318 | None:intergenic |
GAGACAGAGCGCAAGATCAA+GGG | 0.544740 | 3_3:-18885531 | Msa0445130:CDS |
GGTTGAGCATGGAAGTGAGC+TGG | 0.552552 | 3_3:-18886166 | Msa0445130:CDS |
TCAAGTTGCTCAGAAAGGGC+TGG | 0.553946 | 3_3:-18884987 | Msa0445130:CDS |
AAGATCTATCCGAAGATGAA+GGG | 0.556404 | 3_3:-18885873 | Msa0445130:CDS |
ACTTTCTTCTGTCCGTGTGG+TGG | 0.558848 | 3_3:+18886078 | None:intergenic |
CAGCATCAGCGTGTTTCTAG+TGG | 0.559433 | 3_3:-18882934 | Msa0445130:three_prime_UTR |
GAAACACAAGTGGTTGAGCA+TGG | 0.561474 | 3_3:-18886177 | Msa0445130:CDS |
CTCTGAGGATGAAGATGATG+AGG | 0.568128 | 3_3:-18885794 | Msa0445130:CDS |
TGGGAAAGAGGAAGTTTGGT+AGG | 0.575576 | 3_3:-18886146 | Msa0445130:CDS |
TCGCGTAATGGAGCCCAAGA+AGG | 0.580268 | 3_3:+18883164 | None:intergenic |
TCAAAGAACAGGGATGCAAA+GGG | 0.580392 | 3_3:-18884959 | Msa0445130:intron |
GGAATTACTAAATTCAGTGA+AGG | 0.581563 | 3_3:-18885754 | Msa0445130:CDS |
GTTGAGCATGGAAGTGAGCT+GGG | 0.585137 | 3_3:-18886165 | Msa0445130:CDS |
GAAGCCAGCTATTGGTGCAA+AGG | 0.585865 | 3_3:-18883902 | Msa0445130:intron |
CAGTTATCACAAACTCTCAA+CGG | 0.590260 | 3_3:-18888071 | Msa0445130:five_prime_UTR |
ATAAGTGTCGCGACAAAAGG+AGG | 0.590468 | 3_3:-18885282 | Msa0445130:intron |
TCGGAGCAGTGACAGCGGCT+GGG | 0.594770 | 3_3:+18888141 | None:intergenic |
GAAGATGAAGGGGTAGCAGA+AGG | 0.603387 | 3_3:-18885862 | Msa0445130:CDS |
AGCATCAGCGTGTTTCTAGT+GGG | 0.603770 | 3_3:-18882933 | Msa0445130:three_prime_UTR |
GCCAATGCAAGCACAAACAA+GGG | 0.604219 | 3_3:-18883200 | Msa0445130:CDS |
TGCAAGCACAAACAAGGGAG+AGG | 0.605005 | 3_3:-18883195 | Msa0445130:CDS |
TTAACTTTCTTCTGTCCGTG+TGG | 0.619849 | 3_3:+18886075 | None:intergenic |
GTGATAACTGTAGAGATGAA+CGG | 0.638571 | 3_3:+18888084 | None:intergenic |
TATCTCGTTTGAGTTGTTAG+GGG | 0.644096 | 3_3:+18888174 | None:intergenic |
GTGGCATCTATGAAGACTAG+AGG | 0.647773 | 3_3:-18885946 | Msa0445130:CDS |
AGATCTATCCGAAGATGAAG+GGG | 0.651704 | 3_3:-18885872 | Msa0445130:CDS |
AGGAAGTTTGGTAGGAACCA+AGG | 0.652606 | 3_3:-18886138 | Msa0445130:CDS |
TAAGAAAGTTAATTTCTCTG+AGG | 0.655143 | 3_3:-18885809 | Msa0445130:CDS |
TCTAGTACTCCCAGTAGCAG+GGG | 0.660080 | 3_3:+18885972 | None:intergenic |
TGAGGATGAAGATGATGAGG+AGG | 0.663150 | 3_3:-18885791 | Msa0445130:CDS |
TACTGGGAGTACTAGAAGTG+TGG | 0.666406 | 3_3:-18885965 | Msa0445130:CDS |
CATGGCTGAAGAAACACAAG+TGG | 0.666963 | 3_3:-18886187 | Msa0445130:CDS |
GCTGGACCCCTCAAAGAACA+GGG | 0.672553 | 3_3:-18884969 | Msa0445130:CDS |
GAGCGTCGGAGCAGTGACAG+CGG | 0.682278 | 3_3:+18888136 | None:intergenic |
AAAGTGATGAAGCCACCACA+CGG | 0.690683 | 3_3:-18886090 | Msa0445130:CDS |
TCTTGTTATAGAAAAGCTCG+CGG | 0.691844 | 3_3:-18885559 | Msa0445130:CDS |
AGGTTGTAAAGCATTCAGGA+TGG | 0.710807 | 3_3:-18885734 | Msa0445130:CDS |
ATAACTGTAGAGATGAACGG+CGG | 0.790640 | 3_3:+18888087 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTAGAGAAATAAAAAAT+TGG | - | chr3_3:18885081-18885100 | Msa0445130:intron | 10.0% |
!!! | AAGTTTTCTATTTTAAAAAT+AGG | + | chr3_3:18886147-18886166 | None:intergenic | 10.0% |
!! | ATTAATTATCTAAAAAACAT+TGG | + | chr3_3:18886383-18886402 | None:intergenic | 10.0% |
!! | TGATATATGAAATTAAGAAA+GGG | + | chr3_3:18882712-18882731 | None:intergenic | 15.0% |
!! | ATGATATATGAAATTAAGAA+AGG | + | chr3_3:18882713-18882732 | None:intergenic | 15.0% |
!! | TTGAATTATAAAACAATTCA+TGG | - | chr3_3:18884510-18884529 | Msa0445130:intron | 15.0% |
!!! | TTTCTTTTTCTTTTAAATAG+AGG | - | chr3_3:18885464-18885483 | Msa0445130:intron | 15.0% |
!! | GATTATCATTATTAAATTGA+AGG | - | chr3_3:18885673-18885692 | Msa0445130:intron | 15.0% |
!! | TTCTTTAATAATAAAACTTG+AGG | - | chr3_3:18886100-18886119 | Msa0445130:CDS | 15.0% |
!!! | CTTTAAAAAAAATGAATTGA+AGG | + | chr3_3:18886299-18886318 | None:intergenic | 15.0% |
!!! | TCAATTCATTTTTTTTAAAG+AGG | - | chr3_3:18886299-18886318 | Msa0445130:intron | 15.0% |
!! | CAACAATTAAATACTTAAAT+AGG | + | chr3_3:18886576-18886595 | None:intergenic | 15.0% |
!! | TTTAATTGTTGAAAAATAAG+AGG | - | chr3_3:18886585-18886604 | Msa0445130:intron | 15.0% |
!! | TTAATTGTTGAAAAATAAGA+GGG | - | chr3_3:18886586-18886605 | Msa0445130:intron | 15.0% |
!! | AATAAATAGAGTAAATGATT+TGG | + | chr3_3:18886980-18886999 | None:intergenic | 15.0% |
!!! | TAACTTTAAAATAAACTTAC+TGG | + | chr3_3:18887626-18887645 | None:intergenic | 15.0% |
!! | GATATATGAAATTAAGAAAG+GGG | + | chr3_3:18882711-18882730 | None:intergenic | 20.0% |
!! | GTGTTTAATGTATATTTGAT+TGG | - | chr3_3:18882804-18882823 | Msa0445130:three_prime_UTR | 20.0% |
!!! | ATTTTGATTTTATTGGAATG+TGG | - | chr3_3:18882878-18882897 | Msa0445130:three_prime_UTR | 20.0% |
!!! | TTATTTTTACTAGGTTATAG+TGG | - | chr3_3:18883228-18883247 | Msa0445130:intron | 20.0% |
!!! | TTTCATACTTTTAAGTTCAT+AGG | - | chr3_3:18883356-18883375 | Msa0445130:intron | 20.0% |
!! | AATTTGAAAAATTTGGTATC+CGG | + | chr3_3:18883647-18883666 | None:intergenic | 20.0% |
!! | AAATATTGAAAACCTTAATG+TGG | - | chr3_3:18883690-18883709 | Msa0445130:intron | 20.0% |
!!! | ATTGTTATTACCATCTTTTA+GGG | - | chr3_3:18883753-18883772 | Msa0445130:intron | 20.0% |
!! | ATTGTTTAAGGAATTAAAAG+AGG | - | chr3_3:18883945-18883964 | Msa0445130:CDS | 20.0% |
!!! | ATTTGTGAATTTTGTTAAGA+AGG | - | chr3_3:18884056-18884075 | Msa0445130:intron | 20.0% |
!!! | TTTGTGAATTTTGTTAAGAA+GGG | - | chr3_3:18884057-18884076 | Msa0445130:intron | 20.0% |
!! | ATCTATATGATGATAAGTTT+AGG | + | chr3_3:18884129-18884148 | None:intergenic | 20.0% |
!! | ATCAGTTAAATTAGTAAGTA+AGG | - | chr3_3:18884181-18884200 | Msa0445130:intron | 20.0% |
!! | TGAAAATTGAATTCGTATTT+CGG | + | chr3_3:18884312-18884331 | None:intergenic | 20.0% |
!!! | CATAAATTTTAGTGCTAATT+GGG | + | chr3_3:18885273-18885292 | None:intergenic | 20.0% |
!!! | ACATAAATTTTAGTGCTAAT+TGG | + | chr3_3:18885274-18885293 | None:intergenic | 20.0% |
!! | TAGACCAAAATATTATCTAT+CGG | - | chr3_3:18885310-18885329 | Msa0445130:CDS | 20.0% |
!! | AAACAAAATTTGCAAATGTT+AGG | + | chr3_3:18885617-18885636 | None:intergenic | 20.0% |
!!! | TTTCAGTTTATCTTTTATAC+AGG | - | chr3_3:18885898-18885917 | Msa0445130:CDS | 20.0% |
!!! | TTCAGTTTATCTTTTATACA+GGG | - | chr3_3:18885899-18885918 | Msa0445130:CDS | 20.0% |
!! | TAATTGTTGAAAAATAAGAG+GGG | - | chr3_3:18886587-18886606 | Msa0445130:intron | 20.0% |
!! | CAAATTAGATAGTATGAATT+GGG | + | chr3_3:18886737-18886756 | None:intergenic | 20.0% |
!! | ACAAATTAGATAGTATGAAT+TGG | + | chr3_3:18886738-18886757 | None:intergenic | 20.0% |
!!! | TCTGTTGATAATAACTAATT+AGG | - | chr3_3:18886886-18886905 | Msa0445130:intron | 20.0% |
!!! | CATTCAACTTATATACATTT+TGG | + | chr3_3:18886950-18886969 | None:intergenic | 20.0% |
!!! | TCTTTCATTTTTCGAATAAA+GGG | + | chr3_3:18887037-18887056 | None:intergenic | 20.0% |
!!! | TTCTTTCATTTTTCGAATAA+AGG | + | chr3_3:18887038-18887057 | None:intergenic | 20.0% |
!! | TGCATATAAATTCAGAAAAT+CGG | + | chr3_3:18887109-18887128 | None:intergenic | 20.0% |
!!! | ACAATAGAACAATTTTAAAG+TGG | + | chr3_3:18887266-18887285 | None:intergenic | 20.0% |
!! | CTTTATTATCCAATTGTATT+AGG | - | chr3_3:18887969-18887988 | Msa0445130:intron | 20.0% |
!! | AATCATATTCCTAATACAAT+TGG | + | chr3_3:18887981-18888000 | None:intergenic | 20.0% |
!! | CTATAGTAATAGACTATTTA+TGG | - | chr3_3:18888003-18888022 | Msa0445130:intron | 20.0% |
!!! | TGTTATCGTTTTTTATTCCT+GGG | - | chr3_3:18882768-18882787 | Msa0445130:three_prime_UTR | 25.0% |
! | ACATAAGCTATAACTCATTT+GGG | + | chr3_3:18883143-18883162 | None:intergenic | 25.0% |
!!! | GCTTATAGCTTATTTTTACT+AGG | - | chr3_3:18883219-18883238 | Msa0445130:intron | 25.0% |
!! | TTTTCCAATTAAGTCTACAA+GGG | + | chr3_3:18883310-18883329 | None:intergenic | 25.0% |
!! | TTTTTCCAATTAAGTCTACA+AGG | + | chr3_3:18883311-18883330 | None:intergenic | 25.0% |
!! | TGGTCTTAAAAAAATGTCTA+CGG | + | chr3_3:18883731-18883750 | None:intergenic | 25.0% |
! | AAAGATGGTAATAACAATCA+TGG | + | chr3_3:18883751-18883770 | None:intergenic | 25.0% |
!!! | GATTGTTATTACCATCTTTT+AGG | - | chr3_3:18883752-18883771 | Msa0445130:intron | 25.0% |
! | ATTCCTTAAACAATGTTCTT+AGG | + | chr3_3:18883939-18883958 | None:intergenic | 25.0% |
! | GTTAAATTAGTAAGTAAGGT+AGG | - | chr3_3:18884185-18884204 | Msa0445130:intron | 25.0% |
!!! | TTCAACAACGTAAGTTTTAT+TGG | + | chr3_3:18884279-18884298 | None:intergenic | 25.0% |
! | TTAGCAGAAAAATATAGACT+CGG | + | chr3_3:18884362-18884381 | None:intergenic | 25.0% |
!! | GTTTCTTACTTGACTTTTTA+CGG | + | chr3_3:18884603-18884622 | None:intergenic | 25.0% |
! | TGTAAAGTTTCTTCATTTGT+TGG | + | chr3_3:18884672-18884691 | None:intergenic | 25.0% |
! | TAAGAAAGTTAATTTCTCTG+AGG | - | chr3_3:18884906-18884925 | Msa0445130:intron | 25.0% |
! | CTTCTTTATAATACTCTTGA+AGG | + | chr3_3:18885007-18885026 | None:intergenic | 25.0% |
! | TAAACTTGAACAACTCTATA+GGG | - | chr3_3:18885109-18885128 | Msa0445130:intron | 25.0% |
!!! | ATATTTTGGTCTACGATAAT+TGG | + | chr3_3:18885303-18885322 | None:intergenic | 25.0% |
! | AGACCAAAATATTATCTATC+GGG | - | chr3_3:18885311-18885330 | Msa0445130:CDS | 25.0% |
!! | TTACCCGATAGATAATATTT+TGG | + | chr3_3:18885317-18885336 | None:intergenic | 25.0% |
! | AAAGAAAAAGGAATCTCATT+TGG | - | chr3_3:18885865-18885884 | Msa0445130:CDS | 25.0% |
! | AAGAAAAAGGAATCTCATTT+GGG | - | chr3_3:18885866-18885885 | Msa0445130:CDS | 25.0% |
! | AAATAGAAAACTTAAGAGTC+AGG | - | chr3_3:18886154-18886173 | Msa0445130:CDS | 25.0% |
! | TACGTATTAAGGTGATTATA+GGG | + | chr3_3:18886191-18886210 | None:intergenic | 25.0% |
! | TTACGTATTAAGGTGATTAT+AGG | + | chr3_3:18886192-18886211 | None:intergenic | 25.0% |
! | ACGATGTGTTAAAAAAAATG+TGG | + | chr3_3:18886244-18886263 | None:intergenic | 25.0% |
! | GTTTACTGAGGTTTAAAAAA+AGG | + | chr3_3:18886344-18886363 | None:intergenic | 25.0% |
! | AAAATCAGTGTTATCAATAG+AGG | + | chr3_3:18886475-18886494 | None:intergenic | 25.0% |
!!! | ATATGATGTTCTAAGAATGA+GGG | - | chr3_3:18886532-18886551 | Msa0445130:intron | 25.0% |
!!! | GCAAACATTTTGAGTATATT+AGG | + | chr3_3:18886715-18886734 | None:intergenic | 25.0% |
! | ACCTCTAAATTAATGTGATA+TGG | - | chr3_3:18887198-18887217 | Msa0445130:intron | 25.0% |
! | TCCATATCACATTAATTTAG+AGG | + | chr3_3:18887202-18887221 | None:intergenic | 25.0% |
!! | ACTTTGAACATGATGTTTTT+AGG | - | chr3_3:18887317-18887336 | Msa0445130:intron | 25.0% |
!! | TCCAAGCAATTTGATAATTA+GGG | + | chr3_3:18887482-18887501 | None:intergenic | 25.0% |
!! | ATCCAAGCAATTTGATAATT+AGG | + | chr3_3:18887483-18887502 | None:intergenic | 25.0% |
! | ATTATCAAATTGCTTGGATT+TGG | - | chr3_3:18887484-18887503 | Msa0445130:intron | 25.0% |
! | TTCAAAACCTTAATCTTCAT+CGG | + | chr3_3:18887750-18887769 | None:intergenic | 25.0% |
!!! | TAAGGTTTTGAAACTTGAAA+AGG | - | chr3_3:18887758-18887777 | Msa0445130:intron | 25.0% |
! | TGAACAAATTCAAAATTGGT+TGG | + | chr3_3:18887913-18887932 | None:intergenic | 25.0% |
! | TCAGTGAACAAATTCAAAAT+TGG | + | chr3_3:18887917-18887936 | None:intergenic | 25.0% |
!!! | TTTAATTTCCCATTTTGATG+AGG | - | chr3_3:18888063-18888082 | Msa0445130:five_prime_UTR | 25.0% |
! | TAAAAGTTCCTCATCAAAAT+GGG | + | chr3_3:18888074-18888093 | None:intergenic | 25.0% |
! | ATAAAAGTTCCTCATCAAAA+TGG | + | chr3_3:18888075-18888094 | None:intergenic | 25.0% |
! | ATTTAGTATTATTTCGTCGT+AGG | - | chr3_3:18888102-18888121 | Msa0445130:intron | 25.0% |
! | TTTAGTATTATTTCGTCGTA+GGG | - | chr3_3:18888103-18888122 | Msa0445130:intron | 25.0% |
!! | ATATCTCGTTTGAGTTGTTA+GGG | + | chr3_3:18882545-18882564 | None:intergenic | 30.0% |
!! | AATATCTCGTTTGAGTTGTT+AGG | + | chr3_3:18882546-18882565 | None:intergenic | 30.0% |
AATTAAGAAAGGGGAAAGAA+AGG | + | chr3_3:18882702-18882721 | None:intergenic | 30.0% | |
AACGATAACAGTAGCAAAAT+TGG | + | chr3_3:18882758-18882777 | None:intergenic | 30.0% | |
!!! | CTGTTATCGTTTTTTATTCC+TGG | - | chr3_3:18882767-18882786 | Msa0445130:three_prime_UTR | 30.0% |
!!! | ATTCCTGGGTTTTTGTTTTT+TGG | - | chr3_3:18882782-18882801 | Msa0445130:three_prime_UTR | 30.0% |
GCTTAGTTATAAAGCACAAA+CGG | + | chr3_3:18882974-18882993 | None:intergenic | 30.0% | |
AAGCTATAAGCTCAAATTTG+TGG | + | chr3_3:18882996-18883015 | None:intergenic | 30.0% | |
GACATAAGCTATAACTCATT+TGG | + | chr3_3:18883144-18883163 | None:intergenic | 30.0% | |
TTTACCCTTGTAGACTTAAT+TGG | - | chr3_3:18883303-18883322 | Msa0445130:intron | 30.0% | |
!! | GTTTTAAATCGCTGTTGTAA+TGG | - | chr3_3:18883402-18883421 | Msa0445130:intron | 30.0% |
AAGGAATTGTTAACATCATG+AGG | + | chr3_3:18883530-18883549 | None:intergenic | 30.0% | |
GATGTTAACAATTCCTTTGT+CGG | - | chr3_3:18883533-18883552 | Msa0445130:intron | 30.0% | |
ATGTTAACAATTCCTTTGTC+GGG | - | chr3_3:18883534-18883553 | Msa0445130:intron | 30.0% | |
! | AGGTTTTCAATATTTCCTAG+CGG | + | chr3_3:18883685-18883704 | None:intergenic | 30.0% |
TATTGAAAACCTTAATGTGG+TGG | - | chr3_3:18883693-18883712 | Msa0445130:intron | 30.0% | |
ACAAGAGAATCAAATTGAAC+AGG | + | chr3_3:18883877-18883896 | None:intergenic | 30.0% | |
AACAATGTTCTTAGGAGTTA+GGG | + | chr3_3:18883931-18883950 | None:intergenic | 30.0% | |
AAACAATGTTCTTAGGAGTT+AGG | + | chr3_3:18883932-18883951 | None:intergenic | 30.0% | |
ACTCCTAAGAACATTGTTTA+AGG | - | chr3_3:18883933-18883952 | Msa0445130:CDS | 30.0% | |
TTTGTTAAGAAGGGAGAAAA+TGG | - | chr3_3:18884066-18884085 | Msa0445130:intron | 30.0% | |
TTGTTAAGAAGGGAGAAAAT+GGG | - | chr3_3:18884067-18884086 | Msa0445130:intron | 30.0% | |
TAAGGTAGGTAAAGTTTGTA+GGG | - | chr3_3:18884199-18884218 | Msa0445130:intron | 30.0% | |
TAGCAGAAAAATATAGACTC+GGG | + | chr3_3:18884361-18884380 | None:intergenic | 30.0% | |
TATATGTCACATATGAAGAC+AGG | + | chr3_3:18884488-18884507 | None:intergenic | 30.0% | |
TGTCTTCATATGTGACATAT+AGG | - | chr3_3:18884487-18884506 | Msa0445130:intron | 30.0% | |
TCACTGAATTTAGTAATTCC+TGG | + | chr3_3:18884961-18884980 | None:intergenic | 30.0% | |
GGAATTACTAAATTCAGTGA+AGG | - | chr3_3:18884961-18884980 | Msa0445130:CDS | 30.0% | |
CTAAACTTGAACAACTCTAT+AGG | - | chr3_3:18885108-18885127 | Msa0445130:intron | 30.0% | |
GCAACAGTTAAATAAGTAAG+AGG | + | chr3_3:18885531-18885550 | None:intergenic | 30.0% | |
ACCATCTCAAGTAAAGAAAA+AGG | - | chr3_3:18885853-18885872 | Msa0445130:CDS | 30.0% | |
! | TCCTTTTTCTTTACTTGAGA+TGG | + | chr3_3:18885857-18885876 | None:intergenic | 30.0% |
AGAAAAAGGAATCTCATTTG+GGG | - | chr3_3:18885867-18885886 | Msa0445130:CDS | 30.0% | |
! | GGGAAATTTAACAACTGTTT+TGG | - | chr3_3:18885919-18885938 | Msa0445130:CDS | 30.0% |
TGAGAGAAGTTTACGTATTA+AGG | + | chr3_3:18886202-18886221 | None:intergenic | 30.0% | |
CTGCATAATAAAGTTTACTG+AGG | + | chr3_3:18886356-18886375 | None:intergenic | 30.0% | |
!! | GATATGATGTTCTAAGAATG+AGG | - | chr3_3:18886531-18886550 | Msa0445130:intron | 30.0% |
!! | TATGATGTTCTAAGAATGAG+GGG | - | chr3_3:18886533-18886552 | Msa0445130:intron | 30.0% |
!!! | ACCTATCTGTTCTATTTTTG+TGG | - | chr3_3:18886687-18886706 | Msa0445130:intron | 30.0% |
ACCACAAAAATAGAACAGAT+AGG | + | chr3_3:18886691-18886710 | None:intergenic | 30.0% | |
CTTAATTCTGTTGAAGAACA+AGG | - | chr3_3:18886920-18886939 | Msa0445130:intron | 30.0% | |
TAGACTTGAGCATTTACTTA+CGG | - | chr3_3:18887000-18887019 | Msa0445130:intron | 30.0% | |
TCCCTAATTATCAAATTGCT+TGG | - | chr3_3:18887478-18887497 | Msa0445130:intron | 30.0% | |
AGCATATAATTATCGCGTAA+TGG | + | chr3_3:18887566-18887585 | None:intergenic | 30.0% | |
AAGTTCGAGAATAAAGGATT+GGG | - | chr3_3:18887589-18887608 | Msa0445130:intron | 30.0% | |
CTCATTACGTTACTAAAGAA+TGG | - | chr3_3:18887843-18887862 | Msa0445130:intron | 30.0% | |
ACGTTACTAAAGAATGGAAT+TGG | - | chr3_3:18887849-18887868 | Msa0445130:intron | 30.0% | |
!! | AATTGGTTGGTTTATACCAA+AGG | + | chr3_3:18887900-18887919 | None:intergenic | 30.0% |
TTCATCATGTTCAGTAACTT+TGG | + | chr3_3:18887941-18887960 | None:intergenic | 30.0% | |
!! | TTTGAGTTGTTAGGGGTTAA+GGG | + | chr3_3:18882537-18882556 | None:intergenic | 35.0% |
!! | TATCTCGTTTGAGTTGTTAG+GGG | + | chr3_3:18882544-18882563 | None:intergenic | 35.0% |
GTGATAACTGTAGAGATGAA+CGG | + | chr3_3:18882634-18882653 | None:intergenic | 35.0% | |
CAGTTATCACAAACTCTCAA+CGG | - | chr3_3:18882644-18882663 | Msa0445130:three_prime_UTR | 35.0% | |
TACCAGATGCTGAAAAGAAA+CGG | + | chr3_3:18882678-18882697 | None:intergenic | 35.0% | |
ACACCAAAAAACAAAAACCC+AGG | + | chr3_3:18882788-18882807 | None:intergenic | 35.0% | |
TAAAGCACAAACGGAAACAA+AGG | + | chr3_3:18882965-18882984 | None:intergenic | 35.0% | |
AAGCTATAACTCATTTGGGT+TGG | + | chr3_3:18883139-18883158 | None:intergenic | 35.0% | |
!! | AGAAAGTGTCGGTTATCAAA+CGG | + | chr3_3:18883194-18883213 | None:intergenic | 35.0% |
TTAAATCGCTGTTGTAATGG+CGG | - | chr3_3:18883405-18883424 | Msa0445130:intron | 35.0% | |
TCCTTGATATTGTAACCTTC+AGG | - | chr3_3:18883439-18883458 | Msa0445130:intron | 35.0% | |
CCTTGATATTGTAACCTTCA+GGG | - | chr3_3:18883440-18883459 | Msa0445130:intron | 35.0% | |
CTTGATATTGTAACCTTCAG+GGG | - | chr3_3:18883441-18883460 | Msa0445130:intron | 35.0% | |
!! | CTCTGGATTAGTTAGTTCTT+AGG | - | chr3_3:18883621-18883640 | Msa0445130:intron | 35.0% |
AAAAAAAAAAAGCTGCCGCT+AGG | - | chr3_3:18883667-18883686 | Msa0445130:intron | 35.0% | |
!! | GAAAATGGGATTTTAGCAGT+TGG | - | chr3_3:18884081-18884100 | Msa0445130:intron | 35.0% |
!! | GGATTTTAGCAGTTGGAATT+TGG | - | chr3_3:18884088-18884107 | Msa0445130:intron | 35.0% |
GTAAGGTAGGTAAAGTTTGT+AGG | - | chr3_3:18884198-18884217 | Msa0445130:intron | 35.0% | |
AAGGTAGGTAAAGTTTGTAG+GGG | - | chr3_3:18884200-18884219 | Msa0445130:intron | 35.0% | |
AGCAGAAAAATATAGACTCG+GGG | + | chr3_3:18884360-18884379 | None:intergenic | 35.0% | |
TTTCACCAAAAATAAGCACG+TGG | - | chr3_3:18884801-18884820 | Msa0445130:intron | 35.0% | |
AAGATCTATCCGAAGATGAA+GGG | - | chr3_3:18884842-18884861 | Msa0445130:intron | 35.0% | |
TTCTTGTGATCTGACAATAC+TGG | + | chr3_3:18885136-18885155 | None:intergenic | 35.0% | |
! | TCTTGTTATAGAAAAGCTCG+CGG | - | chr3_3:18885156-18885175 | Msa0445130:intron | 35.0% |
GACAAAAAAGGAAAAGCTGA+TGG | - | chr3_3:18885210-18885229 | Msa0445130:intron | 35.0% | |
TTGTTACAGCTAGCAGAAAA+GGG | - | chr3_3:18885364-18885383 | Msa0445130:intron | 35.0% | |
TGTCACACCTGCTAATTATT+TGG | - | chr3_3:18885390-18885409 | Msa0445130:intron | 35.0% | |
TTTAACTGTTGCTGTGAACA+TGG | - | chr3_3:18885539-18885558 | Msa0445130:CDS | 35.0% | |
CTACTTCTGATTTCTTTCAG+TGG | - | chr3_3:18885563-18885582 | Msa0445130:CDS | 35.0% | |
ACAAAGAGAGGAGGAAAATT+TGG | + | chr3_3:18885643-18885662 | None:intergenic | 35.0% | |
!! | GTTTTATACACACTTGTTGC+AGG | - | chr3_3:18885695-18885714 | Msa0445130:CDS | 35.0% |
CTGTCAGTGTTATCAAATAG+TGG | - | chr3_3:18885964-18885983 | Msa0445130:CDS | 35.0% | |
TATAGATGCTACAACCACTA+TGG | + | chr3_3:18886064-18886083 | None:intergenic | 35.0% | |
ATAGTGGTTGTAGCATCTAT+AGG | - | chr3_3:18886063-18886082 | Msa0445130:CDS | 35.0% | |
TAGTGGTTGTAGCATCTATA+GGG | - | chr3_3:18886064-18886083 | Msa0445130:CDS | 35.0% | |
AAAAAAAATGTGGCAGAGCA+TGG | + | chr3_3:18886234-18886253 | None:intergenic | 35.0% | |
!! | TTTTAAAGAGGCAGCATGTT+TGG | - | chr3_3:18886311-18886330 | Msa0445130:intron | 35.0% |
AAATAGAAGACGTAGCATAG+TGG | + | chr3_3:18886415-18886434 | None:intergenic | 35.0% | |
!! | TAGAGGATAGTGGAAAATAG+TGG | + | chr3_3:18886458-18886477 | None:intergenic | 35.0% |
GTGTTATCAATAGAGGATAG+TGG | + | chr3_3:18886468-18886487 | None:intergenic | 35.0% | |
TCACAAACAAATCTTCAGCA+TGG | + | chr3_3:18886513-18886532 | None:intergenic | 35.0% | |
TGTTGAAAAATAAGAGGGGT+CGG | - | chr3_3:18886591-18886610 | Msa0445130:intron | 35.0% | |
TGAAACCTAAAACTCTGACA+GGG | + | chr3_3:18886650-18886669 | None:intergenic | 35.0% | |
ATGAAACCTAAAACTCTGAC+AGG | + | chr3_3:18886651-18886670 | None:intergenic | 35.0% | |
! | TCGTTCAGTCAGTTTTTCAT+TGG | - | chr3_3:18886855-18886874 | Msa0445130:intron | 35.0% |
GTTCTTCAACAGAATTAAGC+AGG | + | chr3_3:18886919-18886938 | None:intergenic | 35.0% | |
TGTTCAAAGTTCATCCAGTT+TGG | + | chr3_3:18887307-18887326 | None:intergenic | 35.0% | |
! | TTTGATAATTAGGGACACGA+TGG | + | chr3_3:18887473-18887492 | None:intergenic | 35.0% |
CAAGTTCGAGAATAAAGGAT+TGG | - | chr3_3:18887588-18887607 | Msa0445130:intron | 35.0% | |
AGTAACGTAATGAGCAGAAA+TGG | + | chr3_3:18887837-18887856 | None:intergenic | 35.0% | |
ATGGAATTGGAGAAACTTGA+TGG | - | chr3_3:18887862-18887881 | Msa0445130:intron | 35.0% | |
!! | CCAAGCTTTCGATTACTTTT+CGG | + | chr3_3:18888037-18888056 | None:intergenic | 35.0% |
ATTATTTCGTCGTAGGGTAT+TGG | - | chr3_3:18888109-18888128 | Msa0445130:intron | 35.0% | |
!! | GTTTGAGTTGTTAGGGGTTA+AGG | + | chr3_3:18882538-18882557 | None:intergenic | 40.0% |
GAAACTGTGAAGCTAGGTTT+CGG | + | chr3_3:18882604-18882623 | None:intergenic | 40.0% | |
ATAACTGTAGAGATGAACGG+CGG | + | chr3_3:18882631-18882650 | None:intergenic | 40.0% | |
!! | GAAAGTGTCGGTTATCAAAC+GGG | + | chr3_3:18883193-18883212 | None:intergenic | 40.0% |
! | ATAAGCTCGTGAGAAAGTGT+CGG | + | chr3_3:18883205-18883224 | None:intergenic | 40.0% |
CCCTGAAGGTTACAATATCA+AGG | + | chr3_3:18883443-18883462 | None:intergenic | 40.0% | |
ATATTGTAACCTTCAGGGGT+TGG | - | chr3_3:18883445-18883464 | Msa0445130:intron | 40.0% | |
AAGCAAATCCCTATATGGAC+TGG | + | chr3_3:18883560-18883579 | None:intergenic | 40.0% | |
! | GTCCATATAGGGATTTGCTT+TGG | - | chr3_3:18883560-18883579 | Msa0445130:intron | 40.0% |
AGCCAAAGCAAATCCCTATA+TGG | + | chr3_3:18883565-18883584 | None:intergenic | 40.0% | |
!! | GGATTAGTTAGTTCTTAGGC+CGG | - | chr3_3:18883625-18883644 | Msa0445130:intron | 40.0% |
! | AATGTCTACGGTAACCGTTT+TGG | + | chr3_3:18883719-18883738 | None:intergenic | 40.0% |
! | GTCAAAGCATCCCTAAAAGA+TGG | + | chr3_3:18883766-18883785 | None:intergenic | 40.0% |
! | GGGATGCTTTGACTTATGAT+TGG | - | chr3_3:18883773-18883792 | Msa0445130:intron | 40.0% |
ATTCCATCATGTGACTCCTT+GGG | - | chr3_3:18883845-18883864 | Msa0445130:intron | 40.0% | |
GGGAGGTTTAGAGAAAAACA+AGG | - | chr3_3:18884220-18884239 | Msa0445130:intron | 40.0% | |
! | TACTTGACTTTTTACGGCCT+TGG | + | chr3_3:18884597-18884616 | None:intergenic | 40.0% |
TTAACTTTCTTCTGTCCGTG+TGG | + | chr3_3:18884643-18884662 | None:intergenic | 40.0% | |
!! | TTCCTCCACGTGCTTATTTT+TGG | + | chr3_3:18884809-18884828 | None:intergenic | 40.0% |
GAAGATCTATCCGAAGATGA+AGG | - | chr3_3:18884841-18884860 | Msa0445130:intron | 40.0% | |
AGATCTATCCGAAGATGAAG+GGG | - | chr3_3:18884843-18884862 | Msa0445130:intron | 40.0% | |
! | GTGAAGGTTGTAAAGCATTC+AGG | - | chr3_3:18884977-18884996 | Msa0445130:CDS | 40.0% |
! | AGGTTGTAAAGCATTCAGGA+TGG | - | chr3_3:18884981-18885000 | Msa0445130:CDS | 40.0% |
! | GAGTGTTTCTGATGAGTTGT+TGG | - | chr3_3:18885026-18885045 | Msa0445130:intron | 40.0% |
! | TGATGAGTTGTTGGTAAGCT+AGG | - | chr3_3:18885035-18885054 | Msa0445130:intron | 40.0% |
GATCAAGGGAGAGACAAAAA+AGG | - | chr3_3:18885198-18885217 | Msa0445130:intron | 40.0% | |
CTTGTTACAGCTAGCAGAAA+AGG | - | chr3_3:18885363-18885382 | Msa0445130:intron | 40.0% | |
! | CTTATAAGTGTCGCGACAAA+AGG | - | chr3_3:18885430-18885449 | Msa0445130:intron | 40.0% |
TCATACAAAGCGACAAAGAG+AGG | + | chr3_3:18885655-18885674 | None:intergenic | 40.0% | |
! | AAAGCTCAAGTTGCTCAGAA+AGG | - | chr3_3:18885723-18885742 | Msa0445130:CDS | 40.0% |
! | AAGCTCAAGTTGCTCAGAAA+GGG | - | chr3_3:18885724-18885743 | Msa0445130:CDS | 40.0% |
TTTGCATCCCTGTTCTTTGA+GGG | + | chr3_3:18885756-18885775 | None:intergenic | 40.0% | |
TCAAAGAACAGGGATGCAAA+GGG | - | chr3_3:18885756-18885775 | Msa0445130:CDS | 40.0% | |
GTGGAATAGCATAGCATTGT+AGG | + | chr3_3:18886439-18886458 | None:intergenic | 40.0% | |
GTTGAAAAATAAGAGGGGTC+GGG | - | chr3_3:18886592-18886611 | Msa0445130:intron | 40.0% | |
! | TGGTTCTATTTGGAGAAGCA+TGG | + | chr3_3:18886626-18886645 | None:intergenic | 40.0% |
! | AAGCCTTCTTTTCAGCGTTA+GGG | - | chr3_3:18886791-18886810 | Msa0445130:intron | 40.0% |
AACAGAATTAAGCAGGACTC+GGG | + | chr3_3:18886912-18886931 | None:intergenic | 40.0% | |
CAACAGAATTAAGCAGGACT+CGG | + | chr3_3:18886913-18886932 | None:intergenic | 40.0% | |
AGCATTTACTTACGGACACT+TGG | - | chr3_3:18887008-18887027 | Msa0445130:intron | 40.0% | |
GCATTTACTTACGGACACTT+GGG | - | chr3_3:18887009-18887028 | Msa0445130:intron | 40.0% | |
GCTTAGACAAATTGCCAAAC+TGG | - | chr3_3:18887290-18887309 | Msa0445130:intron | 40.0% | |
TTGCTTGGATTTGGATATGC+AGG | - | chr3_3:18887493-18887512 | Msa0445130:intron | 40.0% | |
AGAGGATGAACAACCTTCTT+GGG | - | chr3_3:18887538-18887557 | Msa0445130:intron | 40.0% | |
GCTGACAAGTTCGAGAATAA+AGG | - | chr3_3:18887583-18887602 | Msa0445130:intron | 40.0% | |
TGAGCAACATGATGAGTACA+AGG | + | chr3_3:18887671-18887690 | None:intergenic | 40.0% | |
TTCATCGGAACTGCTATCTT+GGG | + | chr3_3:18887735-18887754 | None:intergenic | 40.0% | |
AGCAGTTCCGATGAAGATTA+AGG | - | chr3_3:18887740-18887759 | Msa0445130:intron | 40.0% | |
!! | CGTGTTTCTAGTGGGATAAT+CGG | - | chr3_3:18887790-18887809 | Msa0445130:intron | 40.0% |
CCGAAAAGTAATCGAAAGCT+TGG | - | chr3_3:18888034-18888053 | Msa0445130:intron | 40.0% | |
GTTGTTAGGGGTTAAGGGAA+GGG | + | chr3_3:18882532-18882551 | None:intergenic | 45.0% | |
AGTTGTTAGGGGTTAAGGGA+AGG | + | chr3_3:18882533-18882552 | None:intergenic | 45.0% | |
GGAGTTGAAACTGTGAAGCT+AGG | + | chr3_3:18882610-18882629 | None:intergenic | 45.0% | |
! | CTCCGTTTCTTTTCAGCATC+TGG | - | chr3_3:18882673-18882692 | Msa0445130:three_prime_UTR | 45.0% |
TAACCCACCTGAATTGACAC+TGG | - | chr3_3:18883049-18883068 | Msa0445130:intron | 45.0% | |
AACCCACCTGAATTGACACT+GGG | - | chr3_3:18883050-18883069 | Msa0445130:intron | 45.0% | |
ATTCTCCCCAGTGTCAATTC+AGG | + | chr3_3:18883059-18883078 | None:intergenic | 45.0% | |
TTGAACCTGTGACCTCAAAG+AGG | - | chr3_3:18883078-18883097 | Msa0445130:intron | 45.0% | |
!! | ATAACTCATTTGGGTTGGCC+TGG | + | chr3_3:18883134-18883153 | None:intergenic | 45.0% |
CTGCGTGTTTGTCATCATTG+AGG | - | chr3_3:18883380-18883399 | Msa0445130:intron | 45.0% | |
! | ATGAGAGTGTGTTCCTCTCA+AGG | - | chr3_3:18883490-18883509 | Msa0445130:intron | 45.0% |
TGTGTTCCTCTCAAGGTTCT+GGG | - | chr3_3:18883497-18883516 | Msa0445130:intron | 45.0% | |
! | CTTCAATTGCGCCTTGTTAG+TGG | - | chr3_3:18883583-18883602 | Msa0445130:intron | 45.0% |
! | AATTGCGCCTTGTTAGTGGA+CGG | - | chr3_3:18883587-18883606 | Msa0445130:intron | 45.0% |
AATCCAACCGTCCACTAACA+AGG | + | chr3_3:18883597-18883616 | None:intergenic | 45.0% | |
CCTTAATGTGGTGGCCAAAA+CGG | - | chr3_3:18883702-18883721 | Msa0445130:intron | 45.0% | |
GATTCCATCATGTGACTCCT+TGG | - | chr3_3:18883844-18883863 | Msa0445130:intron | 45.0% | |
!! | ACCGTTCTACTAGTTTGCTG+TGG | - | chr3_3:18884003-18884022 | Msa0445130:intron | 45.0% |
GCCACAGCAAACTAGTAGAA+CGG | + | chr3_3:18884007-18884026 | None:intergenic | 45.0% | |
GTAGGTAAAGTTTGTAGGGG+AGG | - | chr3_3:18884203-18884222 | Msa0445130:intron | 45.0% | |
CATGGCTGAAGAAACACAAG+TGG | - | chr3_3:18884528-18884547 | Msa0445130:intron | 45.0% | |
GAAACACAAGTGGTTGAGCA+TGG | - | chr3_3:18884538-18884557 | Msa0445130:intron | 45.0% | |
TGGGAAAGAGGAAGTTTGGT+AGG | - | chr3_3:18884569-18884588 | Msa0445130:intron | 45.0% | |
AGGAAGTTTGGTAGGAACCA+AGG | - | chr3_3:18884577-18884596 | Msa0445130:intron | 45.0% | |
! | TGTGGTGGCTTCATCACTTT+TGG | + | chr3_3:18884625-18884644 | None:intergenic | 45.0% |
AAAGTGATGAAGCCACCACA+CGG | - | chr3_3:18884625-18884644 | Msa0445130:intron | 45.0% | |
TTCTAGTACTCCCAGTAGCA+GGG | + | chr3_3:18884747-18884766 | None:intergenic | 45.0% | |
!! | TACTGGGAGTACTAGAAGTG+TGG | - | chr3_3:18884750-18884769 | Msa0445130:intron | 45.0% |
GTGGCATCTATGAAGACTAG+AGG | - | chr3_3:18884769-18884788 | Msa0445130:intron | 45.0% | |
CACCAAAAATAAGCACGTGG+AGG | - | chr3_3:18884804-18884823 | Msa0445130:intron | 45.0% | |
TTCTGCTACCCCTTCATCTT+CGG | + | chr3_3:18884854-18884873 | None:intergenic | 45.0% | |
! | CTCTGAGGATGAAGATGATG+AGG | - | chr3_3:18884921-18884940 | Msa0445130:intron | 45.0% |
TGAGGATGAAGATGATGAGG+AGG | - | chr3_3:18884924-18884943 | Msa0445130:intron | 45.0% | |
TATAGAAAAGCTCGCGGAAG+AGG | - | chr3_3:18885162-18885181 | Msa0445130:intron | 45.0% | |
TATCTATCGGGTAAGCAGTC+TGG | - | chr3_3:18885323-18885342 | Msa0445130:CDS | 45.0% | |
TGCGCGTCCAAATAATTAGC+AGG | + | chr3_3:18885400-18885419 | None:intergenic | 45.0% | |
! | ATAAGTGTCGCGACAAAAGG+AGG | - | chr3_3:18885433-18885452 | Msa0445130:intron | 45.0% |
TACAAAGCGACAAAGAGAGG+AGG | + | chr3_3:18885652-18885671 | None:intergenic | 45.0% | |
TTGCATCCCTGTTCTTTGAG+GGG | + | chr3_3:18885755-18885774 | None:intergenic | 45.0% | |
CTTTGCATCCCTGTTCTTTG+AGG | + | chr3_3:18885757-18885776 | None:intergenic | 45.0% | |
CTCAAAGAACAGGGATGCAA+AGG | - | chr3_3:18885755-18885774 | Msa0445130:CDS | 45.0% | |
TGAGCTGCATACAACCTCTT+TGG | - | chr3_3:18886030-18886049 | Msa0445130:CDS | 45.0% | |
GAGCTGCATACAACCTCTTT+GGG | - | chr3_3:18886031-18886050 | Msa0445130:CDS | 45.0% | |
ATACAACCTCTTTGGGCCTT+TGG | - | chr3_3:18886038-18886057 | Msa0445130:CDS | 45.0% | |
ATCCTCCTCACTGGAAATAG+AGG | + | chr3_3:18886273-18886292 | None:intergenic | 45.0% | |
! | CTGACAGGGATGGTTCTATT+TGG | + | chr3_3:18886636-18886655 | None:intergenic | 45.0% |
! | ACCATCCCTGTCAGAGTTTT+AGG | - | chr3_3:18886642-18886661 | Msa0445130:intron | 45.0% |
ACCTAAAACTCTGACAGGGA+TGG | + | chr3_3:18886646-18886665 | None:intergenic | 45.0% | |
CGCTGAAAAGAAGGCTTCTT+TGG | + | chr3_3:18886788-18886807 | None:intergenic | 45.0% | |
! | GAAGCCTTCTTTTCAGCGTT+AGG | - | chr3_3:18886790-18886809 | Msa0445130:intron | 45.0% |
CTTCCCTAACGCTGAAAAGA+AGG | + | chr3_3:18886797-18886816 | None:intergenic | 45.0% | |
ATCACCTTTGCACCAATAGC+TGG | + | chr3_3:18886820-18886839 | None:intergenic | 45.0% | |
GAGAGGATGAACAACCTTCT+TGG | - | chr3_3:18887537-18887556 | Msa0445130:intron | 45.0% | |
CATGATGAGTACAAGGTAGC+TGG | + | chr3_3:18887664-18887683 | None:intergenic | 45.0% | |
TCATCATGTTGCTCAACTGC+AGG | - | chr3_3:18887676-18887695 | Msa0445130:intron | 45.0% | |
CATCATGTTGCTCAACTGCA+GGG | - | chr3_3:18887677-18887696 | Msa0445130:intron | 45.0% | |
CTTCATCGGAACTGCTATCT+TGG | + | chr3_3:18887736-18887755 | None:intergenic | 45.0% | |
!! | AGCATCAGCGTGTTTCTAGT+GGG | - | chr3_3:18887782-18887801 | Msa0445130:intron | 45.0% |
! | GGAGAAACTTGATGGCTGAT+TGG | - | chr3_3:18887870-18887889 | Msa0445130:intron | 45.0% |
! | AAACTTGATGGCTGATTGGC+TGG | - | chr3_3:18887874-18887893 | Msa0445130:intron | 45.0% |
!!! | TTTATTTATTTTGATTTTAT+TGG | - | chr3_3:18882871-18882890 | Msa0445130:three_prime_UTR | 5.0% |
!!! | TTTTTTTAATTTGAAAAATT+TGG | + | chr3_3:18883654-18883673 | None:intergenic | 5.0% |
!!! | ATATTATTTTCTTTTTTATT+AGG | - | chr3_3:18887236-18887255 | Msa0445130:intron | 5.0% |
ACCCACCTGAATTGACACTG+GGG | - | chr3_3:18883051-18883070 | Msa0445130:intron | 50.0% | |
TCCCCAGTGTCAATTCAGGT+GGG | + | chr3_3:18883055-18883074 | None:intergenic | 50.0% | |
GTGTGTTCCTCTCAAGGTTC+TGG | - | chr3_3:18883496-18883515 | Msa0445130:intron | 50.0% | |
TTCGAACCCAGAACCTTGAG+AGG | + | chr3_3:18883506-18883525 | None:intergenic | 50.0% | |
!! | TATATGGACTGGCCCGACAA+AGG | + | chr3_3:18883549-18883568 | None:intergenic | 50.0% |
TTTGTCGGGCCAGTCCATAT+AGG | - | chr3_3:18883548-18883567 | Msa0445130:intron | 50.0% | |
TTGTCGGGCCAGTCCATATA+GGG | - | chr3_3:18883549-18883568 | Msa0445130:intron | 50.0% | |
! | GGACGGTTGGATTGATTCTC+TGG | - | chr3_3:18883604-18883623 | Msa0445130:intron | 50.0% |
!! | CCGTTTTGGCCACCACATTA+AGG | + | chr3_3:18883705-18883724 | None:intergenic | 50.0% |
TGACCCAAGGAGTCACATGA+TGG | + | chr3_3:18883851-18883870 | None:intergenic | 50.0% | |
ATCATGTGACTCCTTGGGTC+AGG | - | chr3_3:18883850-18883869 | Msa0445130:intron | 50.0% | |
TCATGTGACTCCTTGGGTCA+GGG | - | chr3_3:18883851-18883870 | Msa0445130:intron | 50.0% | |
GTTGAGCATGGAAGTGAGCT+GGG | - | chr3_3:18884550-18884569 | Msa0445130:intron | 50.0% | |
ATGGAAGTGAGCTGGGAAAG+AGG | - | chr3_3:18884557-18884576 | Msa0445130:intron | 50.0% | |
GAGCTGGGAAAGAGGAAGTT+TGG | - | chr3_3:18884565-18884584 | Msa0445130:intron | 50.0% | |
ACTTTCTTCTGTCCGTGTGG+TGG | + | chr3_3:18884640-18884659 | None:intergenic | 50.0% | |
TCTAGTACTCCCAGTAGCAG+GGG | + | chr3_3:18884746-18884765 | None:intergenic | 50.0% | |
CTTCTAGTACTCCCAGTAGC+AGG | + | chr3_3:18884748-18884767 | None:intergenic | 50.0% | |
GAAGATGAAGGGGTAGCAGA+AGG | - | chr3_3:18884853-18884872 | Msa0445130:intron | 50.0% | |
GAGACAGAGCGCAAGATCAA+GGG | - | chr3_3:18885184-18885203 | Msa0445130:intron | 50.0% | |
! | TCAAGTTGCTCAGAAAGGGC+TGG | - | chr3_3:18885728-18885747 | Msa0445130:CDS | 50.0% |
GCTACAACCACTATGGCCAA+AGG | + | chr3_3:18886057-18886076 | None:intergenic | 50.0% | |
CTCACTGGAAATAGAGGAGG+AGG | + | chr3_3:18886267-18886286 | None:intergenic | 50.0% | |
CTCCTCCTCTATTTCCAGTG+AGG | - | chr3_3:18886265-18886284 | Msa0445130:intron | 50.0% | |
CTCCTCACTGGAAATAGAGG+AGG | + | chr3_3:18886270-18886289 | None:intergenic | 50.0% | |
CTCCTCTATTTCCAGTGAGG+AGG | - | chr3_3:18886268-18886287 | Msa0445130:intron | 50.0% | |
TGAAGGATCATCCTCCTCAC+TGG | + | chr3_3:18886282-18886301 | None:intergenic | 50.0% | |
AAATAAGAGGGGTCGGGACT+TGG | - | chr3_3:18886598-18886617 | Msa0445130:intron | 50.0% | |
AATAAGAGGGGTCGGGACTT+GGG | - | chr3_3:18886599-18886618 | Msa0445130:intron | 50.0% | |
GAAGCCAGCTATTGGTGCAA+AGG | - | chr3_3:18886813-18886832 | Msa0445130:intron | 50.0% | |
!! | CAGCATCAGCGTGTTTCTAG+TGG | - | chr3_3:18887781-18887800 | Msa0445130:intron | 50.0% |
GAAGCTAGGTTTCGGAGCGT+CGG | + | chr3_3:18882596-18882615 | None:intergenic | 55.0% | |
CTCCCCAGTGTCAATTCAGG+TGG | + | chr3_3:18883056-18883075 | None:intergenic | 55.0% | |
!! | GTGCTCCTCTTTGAGGTCAC+AGG | + | chr3_3:18883086-18883105 | None:intergenic | 55.0% |
! | TGGGAGTGTGCTCCTCTTTG+AGG | + | chr3_3:18883093-18883112 | None:intergenic | 55.0% |
!! | GTGGTATTGGCTTGGGGTCT+GGG | + | chr3_3:18883112-18883131 | None:intergenic | 55.0% |
!! | TGGCCTGGTGGTATTGGCTT+GGG | + | chr3_3:18883119-18883138 | None:intergenic | 55.0% |
!! | TTGGCCTGGTGGTATTGGCT+TGG | + | chr3_3:18883120-18883139 | None:intergenic | 55.0% |
!! | TTGGGTTGGCCTGGTGGTAT+TGG | + | chr3_3:18883125-18883144 | None:intergenic | 55.0% |
!! | ACTCATTTGGGTTGGCCTGG+TGG | + | chr3_3:18883131-18883150 | None:intergenic | 55.0% |
! | TTGGCGTGGTAGTGTAGGCT+TGG | - | chr3_3:18883464-18883483 | Msa0445130:intron | 55.0% |
! | TGGCGTGGTAGTGTAGGCTT+GGG | - | chr3_3:18883465-18883484 | Msa0445130:intron | 55.0% |
ATTGAACAGGCCCTGACCCA+AGG | + | chr3_3:18883864-18883883 | None:intergenic | 55.0% | |
GGTTGAGCATGGAAGTGAGC+TGG | - | chr3_3:18884549-18884568 | Msa0445130:intron | 55.0% | |
AGACAACTGCCCCTGCTACT+GGG | - | chr3_3:18884734-18884753 | Msa0445130:intron | 55.0% | |
GAGGAGGATGAGATTCAGCC+AGG | - | chr3_3:18884940-18884959 | Msa0445130:intron | 55.0% | |
GGAGACAGAGCGCAAGATCA+AGG | - | chr3_3:18885183-18885202 | Msa0445130:intron | 55.0% | |
GCTGGACCCCTCAAAGAACA+GGG | - | chr3_3:18885746-18885765 | Msa0445130:CDS | 55.0% | |
CTATGGCCAAAGGCCCAAAG+AGG | + | chr3_3:18886047-18886066 | None:intergenic | 55.0% | |
CTTTGGGCCTTTGGCCATAG+TGG | - | chr3_3:18886047-18886066 | Msa0445130:CDS | 55.0% | |
GCGTTAGGGAAGCCAGCTAT+TGG | - | chr3_3:18886805-18886824 | Msa0445130:intron | 55.0% | |
! | TCGCGTAATGGAGCCCAAGA+AGG | + | chr3_3:18887554-18887573 | None:intergenic | 55.0% |
!! | ATGGCTGATTGGCTGGCCTT+TGG | - | chr3_3:18887881-18887900 | Msa0445130:intron | 55.0% |
!! | GGTGGTATTGGCTTGGGGTC+TGG | + | chr3_3:18883113-18883132 | None:intergenic | 60.0% |
GACCCCAAGCCAATACCACC+AGG | - | chr3_3:18883113-18883132 | Msa0445130:CDS | 60.0% | |
!! | GGCCTGGTGGTATTGGCTTG+GGG | + | chr3_3:18883118-18883137 | None:intergenic | 60.0% |
! | GTAACCTTCAGGGGTTGGCG+TGG | - | chr3_3:18883450-18883469 | Msa0445130:intron | 60.0% |
ACTACCACGCCAACCCCTGA+AGG | + | chr3_3:18883457-18883476 | None:intergenic | 60.0% | |
! | AGGGGTTGGCGTGGTAGTGT+AGG | - | chr3_3:18883459-18883478 | Msa0445130:intron | 60.0% |
! | GCGCCTTGTTAGTGGACGGT+TGG | - | chr3_3:18883591-18883610 | Msa0445130:intron | 60.0% |
GAGACAACTGCCCCTGCTAC+TGG | - | chr3_3:18884733-18884752 | Msa0445130:intron | 60.0% | |
GGCTGGACCCCTCAAAGAAC+AGG | - | chr3_3:18885745-18885764 | Msa0445130:CDS | 60.0% | |
TCGGAGCAGTGACAGCGGCT+GGG | + | chr3_3:18882577-18882596 | None:intergenic | 65.0% | |
!! | GAGCGTCGGAGCAGTGACAG+CGG | + | chr3_3:18882582-18882601 | None:intergenic | 65.0% |
GTCGGAGCAGTGACAGCGGC+TGG | + | chr3_3:18882578-18882597 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 18882521 | 18888216 | 18882521 | ID=Msa0445130;Name=Msa0445130 |
chr3_3 | mRNA | 18882521 | 18888216 | 18882521 | ID=Msa0445130-mRNA-1;Parent=Msa0445130;Name=Msa0445130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=157|1|1|1|0.77|0.7|10|456|340 |
chr3_3 | exon | 18882521 | 18883039 | 18882521 | ID=Msa0445130-mRNA-1:exon:4036;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18883112 | 18883222 | 18883112 | ID=Msa0445130-mRNA-1:exon:4035;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18883903 | 18883967 | 18883903 | ID=Msa0445130-mRNA-1:exon:4034;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18884960 | 18885020 | 18884960 | ID=Msa0445130-mRNA-1:exon:4033;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18885135 | 18885154 | 18885135 | ID=Msa0445130-mRNA-1:exon:4032;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18885283 | 18885364 | 18885283 | ID=Msa0445130-mRNA-1:exon:4031;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18885506 | 18885607 | 18885506 | ID=Msa0445130-mRNA-1:exon:4030;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18885690 | 18886228 | 18885690 | ID=Msa0445130-mRNA-1:exon:4029;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18888043 | 18888110 | 18888043 | ID=Msa0445130-mRNA-1:exon:4028;Parent=Msa0445130-mRNA-1 |
chr3_3 | exon | 18888148 | 18888216 | 18888148 | ID=Msa0445130-mRNA-1:exon:4027;Parent=Msa0445130-mRNA-1 |
chr3_3 | five_prime_UTR | 18888148 | 18888216 | 18888148 | ID=Msa0445130-mRNA-1:five_prime_utr;Parent=Msa0445130-mRNA-1 |
chr3_3 | five_prime_UTR | 18888043 | 18888110 | 18888043 | ID=Msa0445130-mRNA-1:five_prime_utr;Parent=Msa0445130-mRNA-1 |
chr3_3 | five_prime_UTR | 18886209 | 18886228 | 18886209 | ID=Msa0445130-mRNA-1:five_prime_utr;Parent=Msa0445130-mRNA-1 |
chr3_3 | CDS | 18885690 | 18886208 | 18885690 | ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1 |
chr3_3 | CDS | 18885506 | 18885607 | 18885506 | ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1 |
chr3_3 | CDS | 18885283 | 18885364 | 18885283 | ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1 |
chr3_3 | CDS | 18885135 | 18885154 | 18885135 | ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1 |
chr3_3 | CDS | 18884960 | 18885020 | 18884960 | ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1 |
chr3_3 | CDS | 18883903 | 18883967 | 18883903 | ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1 |
chr3_3 | CDS | 18883112 | 18883222 | 18883112 | ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1 |
chr3_3 | CDS | 18882977 | 18883039 | 18882977 | ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1 |
chr3_3 | three_prime_UTR | 18882521 | 18882976 | 18882521 | ID=Msa0445130-mRNA-1:three_prime_utr;Parent=Msa0445130-mRNA-1 |
Gene Sequence |
Protein sequence |