AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0445130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0445130 MtrunA17_Chr3g0085271 95.322 342 14 1 1 340 1 342 0.0 644
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0445130 AT5G48240.1 45.538 325 143 8 16 339 18 309 4.93e-79 244
Msa0445130 AT5G48240.3 42.391 368 139 8 16 339 18 356 2.92e-72 228
Msa0445130 AT5G48240.2 44.898 294 120 7 16 308 18 270 1.44e-60 196

Find 114 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATAGTAATAGACTATTTA+TGG 0.119328 3_3:-18882712 Msa0445130:three_prime_UTR
TGTCACACCTGCTAATTATT+TGG 0.128361 3_3:-18885325 Msa0445130:CDS
CGCTGAAAAGAAGGCTTCTT+TGG 0.194609 3_3:+18883930 None:intergenic
CTTTATTATCCAATTGTATT+AGG 0.230112 3_3:-18882746 Msa0445130:three_prime_UTR
ATAAAAGTTCCTCATCAAAA+TGG 0.262718 3_3:+18882643 None:intergenic
TCAGTGAACAAATTCAAAAT+TGG 0.269250 3_3:+18882801 None:intergenic
AATATCTCGTTTGAGTTGTT+AGG 0.289962 3_3:+18888172 None:intergenic
TGTGGTGGCTTCATCACTTT+TGG 0.308341 3_3:+18886093 None:intergenic
GTTTGAGTTGTTAGGGGTTA+AGG 0.309508 3_3:+18888180 None:intergenic
CTTCATCGGAACTGCTATCT+TGG 0.315922 3_3:+18882982 None:intergenic
GTGAAGGTTGTAAAGCATTC+AGG 0.319257 3_3:-18885738 Msa0445130:CDS
GAGCTGGGAAAGAGGAAGTT+TGG 0.319454 3_3:-18886150 Msa0445130:CDS
TTGAATTATAAAACAATTCA+TGG 0.322795 3_3:-18886205 Msa0445130:exon
AGCAGTTCCGATGAAGATTA+AGG 0.322931 3_3:-18882975 Msa0445130:exon
CTTCTTTATAATACTCTTGA+AGG 0.329380 3_3:+18885711 None:intergenic
GAGAGGATGAACAACCTTCT+TGG 0.339326 3_3:-18883178 Msa0445130:CDS
CTTTGCATCCCTGTTCTTTG+AGG 0.339480 3_3:+18884961 None:intergenic
TCACTGAATTTAGTAATTCC+TGG 0.358866 3_3:+18885757 None:intergenic
ATTATTTCGTCGTAGGGTAT+TGG 0.363471 3_3:-18882606 Msa0445130:three_prime_UTR
GGCTGGACCCCTCAAAGAAC+AGG 0.375162 3_3:-18884970 Msa0445130:CDS
TTCTGCTACCCCTTCATCTT+CGG 0.376152 3_3:+18885864 None:intergenic
TTTGCATCCCTGTTCTTTGA+GGG 0.379386 3_3:+18884962 None:intergenic
ATGGCTGATTGGCTGGCCTT+TGG 0.383693 3_3:-18882834 Msa0445130:three_prime_UTR
GCTGACAAGTTCGAGAATAA+AGG 0.387185 3_3:-18883132 Msa0445130:CDS
CTTGTTACAGCTAGCAGAAA+AGG 0.390626 3_3:-18885352 Msa0445130:intron
TCCCTTGTTTGTGCTTGCAT+TGG 0.391353 3_3:+18883199 None:intergenic
TTCATCATGTTCAGTAACTT+TGG 0.395085 3_3:+18882777 None:intergenic
TTTGAGTTGTTAGGGGTTAA+GGG 0.401318 3_3:+18888181 None:intergenic
AATCATATTCCTAATACAAT+TGG 0.407003 3_3:+18882737 None:intergenic
ATATCTCGTTTGAGTTGTTA+GGG 0.411012 3_3:+18888173 None:intergenic
TGTAAAGTTTCTTCATTTGT+TGG 0.412234 3_3:+18886046 None:intergenic
GTCGGAGCAGTGACAGCGGC+TGG 0.416903 3_3:+18888140 None:intergenic
AGTAACGTAATGAGCAGAAA+TGG 0.420863 3_3:+18882881 None:intergenic
CTTATAAGTGTCGCGACAAA+AGG 0.425927 3_3:-18885285 Msa0445130:CDS
AAACTTGATGGCTGATTGGC+TGG 0.426019 3_3:-18882841 Msa0445130:three_prime_UTR
GGAGACAGAGCGCAAGATCA+AGG 0.426021 3_3:-18885532 Msa0445130:CDS
CTCATTACGTTACTAAAGAA+TGG 0.426920 3_3:-18882872 Msa0445130:three_prime_UTR
GAGACAACTGCCCCTGCTAC+TGG 0.429501 3_3:-18885982 Msa0445130:CDS
GGAGAAACTTGATGGCTGAT+TGG 0.433716 3_3:-18882845 Msa0445130:three_prime_UTR
CGTGTTTCTAGTGGGATAAT+CGG 0.434301 3_3:-18882925 Msa0445130:three_prime_UTR
AGAGGATGAACAACCTTCTT+GGG 0.435774 3_3:-18883177 Msa0445130:CDS
ACGTTACTAAAGAATGGAAT+TGG 0.440530 3_3:-18882866 Msa0445130:three_prime_UTR
GCGTTAGGGAAGCCAGCTAT+TGG 0.445925 3_3:-18883910 Msa0445130:CDS
TTCATCGGAACTGCTATCTT+GGG 0.454720 3_3:+18882983 None:intergenic
TAAAAGTTCCTCATCAAAAT+GGG 0.455210 3_3:+18882644 None:intergenic
ATCACCTTTGCACCAATAGC+TGG 0.456798 3_3:+18883898 None:intergenic
ATGGAAGTGAGCTGGGAAAG+AGG 0.457388 3_3:-18886158 Msa0445130:CDS
CAAGTTCGAGAATAAAGGAT+TGG 0.462911 3_3:-18883127 Msa0445130:CDS
TTCAAAACCTTAATCTTCAT+CGG 0.464287 3_3:+18882968 None:intergenic
CCGAAAAGTAATCGAAAGCT+TGG 0.464465 3_3:-18882681 Msa0445130:three_prime_UTR
AGTTGTTAGGGGTTAAGGGA+AGG 0.474131 3_3:+18888185 None:intergenic
GTTGTTAGGGGTTAAGGGAA+GGG 0.474680 3_3:+18888186 None:intergenic
CTTCTAGTACTCCCAGTAGC+AGG 0.475505 3_3:+18885970 None:intergenic
GAGTGTTTCTGATGAGTTGT+TGG 0.478230 3_3:-18885689 Msa0445130:intron
ATGGAATTGGAGAAACTTGA+TGG 0.484582 3_3:-18882853 Msa0445130:three_prime_UTR
CTTCCCTAACGCTGAAAAGA+AGG 0.488467 3_3:+18883921 None:intergenic
AAAGCTCAAGTTGCTCAGAA+AGG 0.489370 3_3:-18884992 Msa0445130:CDS
TTCTTGTGATCTGACAATAC+TGG 0.489621 3_3:+18885582 None:intergenic
TTTAGTATTATTTCGTCGTA+GGG 0.489691 3_3:-18882612 Msa0445130:three_prime_UTR
TGAACAAATTCAAAATTGGT+TGG 0.491540 3_3:+18882805 None:intergenic
AATTGGTTGGTTTATACCAA+AGG 0.494286 3_3:+18882818 None:intergenic
ATTTAGTATTATTTCGTCGT+AGG 0.496791 3_3:-18882613 Msa0445130:three_prime_UTR
AAGCTCAAGTTGCTCAGAAA+GGG 0.498953 3_3:-18884991 Msa0445130:CDS
AGCATATAATTATCGCGTAA+TGG 0.502059 3_3:+18883152 None:intergenic
AAGTTCGAGAATAAAGGATT+GGG 0.504352 3_3:-18883126 Msa0445130:CDS
TATAGAAAAGCTCGCGGAAG+AGG 0.510403 3_3:-18885553 Msa0445130:CDS
CTCAAAGAACAGGGATGCAA+AGG 0.511691 3_3:-18884960 Msa0445130:CDS
GAAGATCTATCCGAAGATGA+AGG 0.518592 3_3:-18885874 Msa0445130:CDS
TTGCATCCCTGTTCTTTGAG+GGG 0.522520 3_3:+18884963 None:intergenic
GAGGAGGATGAGATTCAGCC+AGG 0.523349 3_3:-18885775 Msa0445130:CDS
TTGTTACAGCTAGCAGAAAA+GGG 0.523614 3_3:-18885351 Msa0445130:intron
TACCAGATGCTGAAAAGAAA+CGG 0.524919 3_3:+18888040 None:intergenic
TTCTAGTACTCCCAGTAGCA+GGG 0.533288 3_3:+18885971 None:intergenic
AGACAACTGCCCCTGCTACT+GGG 0.534405 3_3:-18885981 Msa0445130:CDS
GGCCAATGCAAGCACAAACA+AGG 0.534686 3_3:-18883201 Msa0445130:CDS
TGCGCGTCCAAATAATTAGC+AGG 0.542869 3_3:+18885318 None:intergenic
GAGACAGAGCGCAAGATCAA+GGG 0.544740 3_3:-18885531 Msa0445130:CDS
GGTTGAGCATGGAAGTGAGC+TGG 0.552552 3_3:-18886166 Msa0445130:CDS
TCAAGTTGCTCAGAAAGGGC+TGG 0.553946 3_3:-18884987 Msa0445130:CDS
AAGATCTATCCGAAGATGAA+GGG 0.556404 3_3:-18885873 Msa0445130:CDS
ACTTTCTTCTGTCCGTGTGG+TGG 0.558848 3_3:+18886078 None:intergenic
CAGCATCAGCGTGTTTCTAG+TGG 0.559433 3_3:-18882934 Msa0445130:three_prime_UTR
GAAACACAAGTGGTTGAGCA+TGG 0.561474 3_3:-18886177 Msa0445130:CDS
CTCTGAGGATGAAGATGATG+AGG 0.568128 3_3:-18885794 Msa0445130:CDS
TGGGAAAGAGGAAGTTTGGT+AGG 0.575576 3_3:-18886146 Msa0445130:CDS
TCGCGTAATGGAGCCCAAGA+AGG 0.580268 3_3:+18883164 None:intergenic
TCAAAGAACAGGGATGCAAA+GGG 0.580392 3_3:-18884959 Msa0445130:intron
GGAATTACTAAATTCAGTGA+AGG 0.581563 3_3:-18885754 Msa0445130:CDS
GTTGAGCATGGAAGTGAGCT+GGG 0.585137 3_3:-18886165 Msa0445130:CDS
GAAGCCAGCTATTGGTGCAA+AGG 0.585865 3_3:-18883902 Msa0445130:intron
CAGTTATCACAAACTCTCAA+CGG 0.590260 3_3:-18888071 Msa0445130:five_prime_UTR
ATAAGTGTCGCGACAAAAGG+AGG 0.590468 3_3:-18885282 Msa0445130:intron
TCGGAGCAGTGACAGCGGCT+GGG 0.594770 3_3:+18888141 None:intergenic
GAAGATGAAGGGGTAGCAGA+AGG 0.603387 3_3:-18885862 Msa0445130:CDS
AGCATCAGCGTGTTTCTAGT+GGG 0.603770 3_3:-18882933 Msa0445130:three_prime_UTR
GCCAATGCAAGCACAAACAA+GGG 0.604219 3_3:-18883200 Msa0445130:CDS
TGCAAGCACAAACAAGGGAG+AGG 0.605005 3_3:-18883195 Msa0445130:CDS
TTAACTTTCTTCTGTCCGTG+TGG 0.619849 3_3:+18886075 None:intergenic
GTGATAACTGTAGAGATGAA+CGG 0.638571 3_3:+18888084 None:intergenic
TATCTCGTTTGAGTTGTTAG+GGG 0.644096 3_3:+18888174 None:intergenic
GTGGCATCTATGAAGACTAG+AGG 0.647773 3_3:-18885946 Msa0445130:CDS
AGATCTATCCGAAGATGAAG+GGG 0.651704 3_3:-18885872 Msa0445130:CDS
AGGAAGTTTGGTAGGAACCA+AGG 0.652606 3_3:-18886138 Msa0445130:CDS
TAAGAAAGTTAATTTCTCTG+AGG 0.655143 3_3:-18885809 Msa0445130:CDS
TCTAGTACTCCCAGTAGCAG+GGG 0.660080 3_3:+18885972 None:intergenic
TGAGGATGAAGATGATGAGG+AGG 0.663150 3_3:-18885791 Msa0445130:CDS
TACTGGGAGTACTAGAAGTG+TGG 0.666406 3_3:-18885965 Msa0445130:CDS
CATGGCTGAAGAAACACAAG+TGG 0.666963 3_3:-18886187 Msa0445130:CDS
GCTGGACCCCTCAAAGAACA+GGG 0.672553 3_3:-18884969 Msa0445130:CDS
GAGCGTCGGAGCAGTGACAG+CGG 0.682278 3_3:+18888136 None:intergenic
AAAGTGATGAAGCCACCACA+CGG 0.690683 3_3:-18886090 Msa0445130:CDS
TCTTGTTATAGAAAAGCTCG+CGG 0.691844 3_3:-18885559 Msa0445130:CDS
AGGTTGTAAAGCATTCAGGA+TGG 0.710807 3_3:-18885734 Msa0445130:CDS
ATAACTGTAGAGATGAACGG+CGG 0.790640 3_3:+18888087 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAGAGAAATAAAAAAT+TGG - chr3_3:18885081-18885100 Msa0445130:intron 10.0%
!!! AAGTTTTCTATTTTAAAAAT+AGG + chr3_3:18886147-18886166 None:intergenic 10.0%
!! ATTAATTATCTAAAAAACAT+TGG + chr3_3:18886383-18886402 None:intergenic 10.0%
!! TGATATATGAAATTAAGAAA+GGG + chr3_3:18882712-18882731 None:intergenic 15.0%
!! ATGATATATGAAATTAAGAA+AGG + chr3_3:18882713-18882732 None:intergenic 15.0%
!! TTGAATTATAAAACAATTCA+TGG - chr3_3:18884510-18884529 Msa0445130:intron 15.0%
!!! TTTCTTTTTCTTTTAAATAG+AGG - chr3_3:18885464-18885483 Msa0445130:intron 15.0%
!! GATTATCATTATTAAATTGA+AGG - chr3_3:18885673-18885692 Msa0445130:intron 15.0%
!! TTCTTTAATAATAAAACTTG+AGG - chr3_3:18886100-18886119 Msa0445130:CDS 15.0%
!!! CTTTAAAAAAAATGAATTGA+AGG + chr3_3:18886299-18886318 None:intergenic 15.0%
!!! TCAATTCATTTTTTTTAAAG+AGG - chr3_3:18886299-18886318 Msa0445130:intron 15.0%
!! CAACAATTAAATACTTAAAT+AGG + chr3_3:18886576-18886595 None:intergenic 15.0%
!! TTTAATTGTTGAAAAATAAG+AGG - chr3_3:18886585-18886604 Msa0445130:intron 15.0%
!! TTAATTGTTGAAAAATAAGA+GGG - chr3_3:18886586-18886605 Msa0445130:intron 15.0%
!! AATAAATAGAGTAAATGATT+TGG + chr3_3:18886980-18886999 None:intergenic 15.0%
!!! TAACTTTAAAATAAACTTAC+TGG + chr3_3:18887626-18887645 None:intergenic 15.0%
!! GATATATGAAATTAAGAAAG+GGG + chr3_3:18882711-18882730 None:intergenic 20.0%
!! GTGTTTAATGTATATTTGAT+TGG - chr3_3:18882804-18882823 Msa0445130:three_prime_UTR 20.0%
!!! ATTTTGATTTTATTGGAATG+TGG - chr3_3:18882878-18882897 Msa0445130:three_prime_UTR 20.0%
!!! TTATTTTTACTAGGTTATAG+TGG - chr3_3:18883228-18883247 Msa0445130:intron 20.0%
!!! TTTCATACTTTTAAGTTCAT+AGG - chr3_3:18883356-18883375 Msa0445130:intron 20.0%
!! AATTTGAAAAATTTGGTATC+CGG + chr3_3:18883647-18883666 None:intergenic 20.0%
!! AAATATTGAAAACCTTAATG+TGG - chr3_3:18883690-18883709 Msa0445130:intron 20.0%
!!! ATTGTTATTACCATCTTTTA+GGG - chr3_3:18883753-18883772 Msa0445130:intron 20.0%
!! ATTGTTTAAGGAATTAAAAG+AGG - chr3_3:18883945-18883964 Msa0445130:CDS 20.0%
!!! ATTTGTGAATTTTGTTAAGA+AGG - chr3_3:18884056-18884075 Msa0445130:intron 20.0%
!!! TTTGTGAATTTTGTTAAGAA+GGG - chr3_3:18884057-18884076 Msa0445130:intron 20.0%
!! ATCTATATGATGATAAGTTT+AGG + chr3_3:18884129-18884148 None:intergenic 20.0%
!! ATCAGTTAAATTAGTAAGTA+AGG - chr3_3:18884181-18884200 Msa0445130:intron 20.0%
!! TGAAAATTGAATTCGTATTT+CGG + chr3_3:18884312-18884331 None:intergenic 20.0%
!!! CATAAATTTTAGTGCTAATT+GGG + chr3_3:18885273-18885292 None:intergenic 20.0%
!!! ACATAAATTTTAGTGCTAAT+TGG + chr3_3:18885274-18885293 None:intergenic 20.0%
!! TAGACCAAAATATTATCTAT+CGG - chr3_3:18885310-18885329 Msa0445130:CDS 20.0%
!! AAACAAAATTTGCAAATGTT+AGG + chr3_3:18885617-18885636 None:intergenic 20.0%
!!! TTTCAGTTTATCTTTTATAC+AGG - chr3_3:18885898-18885917 Msa0445130:CDS 20.0%
!!! TTCAGTTTATCTTTTATACA+GGG - chr3_3:18885899-18885918 Msa0445130:CDS 20.0%
!! TAATTGTTGAAAAATAAGAG+GGG - chr3_3:18886587-18886606 Msa0445130:intron 20.0%
!! CAAATTAGATAGTATGAATT+GGG + chr3_3:18886737-18886756 None:intergenic 20.0%
!! ACAAATTAGATAGTATGAAT+TGG + chr3_3:18886738-18886757 None:intergenic 20.0%
!!! TCTGTTGATAATAACTAATT+AGG - chr3_3:18886886-18886905 Msa0445130:intron 20.0%
!!! CATTCAACTTATATACATTT+TGG + chr3_3:18886950-18886969 None:intergenic 20.0%
!!! TCTTTCATTTTTCGAATAAA+GGG + chr3_3:18887037-18887056 None:intergenic 20.0%
!!! TTCTTTCATTTTTCGAATAA+AGG + chr3_3:18887038-18887057 None:intergenic 20.0%
!! TGCATATAAATTCAGAAAAT+CGG + chr3_3:18887109-18887128 None:intergenic 20.0%
!!! ACAATAGAACAATTTTAAAG+TGG + chr3_3:18887266-18887285 None:intergenic 20.0%
!! CTTTATTATCCAATTGTATT+AGG - chr3_3:18887969-18887988 Msa0445130:intron 20.0%
!! AATCATATTCCTAATACAAT+TGG + chr3_3:18887981-18888000 None:intergenic 20.0%
!! CTATAGTAATAGACTATTTA+TGG - chr3_3:18888003-18888022 Msa0445130:intron 20.0%
!!! TGTTATCGTTTTTTATTCCT+GGG - chr3_3:18882768-18882787 Msa0445130:three_prime_UTR 25.0%
! ACATAAGCTATAACTCATTT+GGG + chr3_3:18883143-18883162 None:intergenic 25.0%
!!! GCTTATAGCTTATTTTTACT+AGG - chr3_3:18883219-18883238 Msa0445130:intron 25.0%
!! TTTTCCAATTAAGTCTACAA+GGG + chr3_3:18883310-18883329 None:intergenic 25.0%
!! TTTTTCCAATTAAGTCTACA+AGG + chr3_3:18883311-18883330 None:intergenic 25.0%
!! TGGTCTTAAAAAAATGTCTA+CGG + chr3_3:18883731-18883750 None:intergenic 25.0%
! AAAGATGGTAATAACAATCA+TGG + chr3_3:18883751-18883770 None:intergenic 25.0%
!!! GATTGTTATTACCATCTTTT+AGG - chr3_3:18883752-18883771 Msa0445130:intron 25.0%
! ATTCCTTAAACAATGTTCTT+AGG + chr3_3:18883939-18883958 None:intergenic 25.0%
! GTTAAATTAGTAAGTAAGGT+AGG - chr3_3:18884185-18884204 Msa0445130:intron 25.0%
!!! TTCAACAACGTAAGTTTTAT+TGG + chr3_3:18884279-18884298 None:intergenic 25.0%
! TTAGCAGAAAAATATAGACT+CGG + chr3_3:18884362-18884381 None:intergenic 25.0%
!! GTTTCTTACTTGACTTTTTA+CGG + chr3_3:18884603-18884622 None:intergenic 25.0%
! TGTAAAGTTTCTTCATTTGT+TGG + chr3_3:18884672-18884691 None:intergenic 25.0%
! TAAGAAAGTTAATTTCTCTG+AGG - chr3_3:18884906-18884925 Msa0445130:intron 25.0%
! CTTCTTTATAATACTCTTGA+AGG + chr3_3:18885007-18885026 None:intergenic 25.0%
! TAAACTTGAACAACTCTATA+GGG - chr3_3:18885109-18885128 Msa0445130:intron 25.0%
!!! ATATTTTGGTCTACGATAAT+TGG + chr3_3:18885303-18885322 None:intergenic 25.0%
! AGACCAAAATATTATCTATC+GGG - chr3_3:18885311-18885330 Msa0445130:CDS 25.0%
!! TTACCCGATAGATAATATTT+TGG + chr3_3:18885317-18885336 None:intergenic 25.0%
! AAAGAAAAAGGAATCTCATT+TGG - chr3_3:18885865-18885884 Msa0445130:CDS 25.0%
! AAGAAAAAGGAATCTCATTT+GGG - chr3_3:18885866-18885885 Msa0445130:CDS 25.0%
! AAATAGAAAACTTAAGAGTC+AGG - chr3_3:18886154-18886173 Msa0445130:CDS 25.0%
! TACGTATTAAGGTGATTATA+GGG + chr3_3:18886191-18886210 None:intergenic 25.0%
! TTACGTATTAAGGTGATTAT+AGG + chr3_3:18886192-18886211 None:intergenic 25.0%
! ACGATGTGTTAAAAAAAATG+TGG + chr3_3:18886244-18886263 None:intergenic 25.0%
! GTTTACTGAGGTTTAAAAAA+AGG + chr3_3:18886344-18886363 None:intergenic 25.0%
! AAAATCAGTGTTATCAATAG+AGG + chr3_3:18886475-18886494 None:intergenic 25.0%
!!! ATATGATGTTCTAAGAATGA+GGG - chr3_3:18886532-18886551 Msa0445130:intron 25.0%
!!! GCAAACATTTTGAGTATATT+AGG + chr3_3:18886715-18886734 None:intergenic 25.0%
! ACCTCTAAATTAATGTGATA+TGG - chr3_3:18887198-18887217 Msa0445130:intron 25.0%
! TCCATATCACATTAATTTAG+AGG + chr3_3:18887202-18887221 None:intergenic 25.0%
!! ACTTTGAACATGATGTTTTT+AGG - chr3_3:18887317-18887336 Msa0445130:intron 25.0%
!! TCCAAGCAATTTGATAATTA+GGG + chr3_3:18887482-18887501 None:intergenic 25.0%
!! ATCCAAGCAATTTGATAATT+AGG + chr3_3:18887483-18887502 None:intergenic 25.0%
! ATTATCAAATTGCTTGGATT+TGG - chr3_3:18887484-18887503 Msa0445130:intron 25.0%
! TTCAAAACCTTAATCTTCAT+CGG + chr3_3:18887750-18887769 None:intergenic 25.0%
!!! TAAGGTTTTGAAACTTGAAA+AGG - chr3_3:18887758-18887777 Msa0445130:intron 25.0%
! TGAACAAATTCAAAATTGGT+TGG + chr3_3:18887913-18887932 None:intergenic 25.0%
! TCAGTGAACAAATTCAAAAT+TGG + chr3_3:18887917-18887936 None:intergenic 25.0%
!!! TTTAATTTCCCATTTTGATG+AGG - chr3_3:18888063-18888082 Msa0445130:five_prime_UTR 25.0%
! TAAAAGTTCCTCATCAAAAT+GGG + chr3_3:18888074-18888093 None:intergenic 25.0%
! ATAAAAGTTCCTCATCAAAA+TGG + chr3_3:18888075-18888094 None:intergenic 25.0%
! ATTTAGTATTATTTCGTCGT+AGG - chr3_3:18888102-18888121 Msa0445130:intron 25.0%
! TTTAGTATTATTTCGTCGTA+GGG - chr3_3:18888103-18888122 Msa0445130:intron 25.0%
!! ATATCTCGTTTGAGTTGTTA+GGG + chr3_3:18882545-18882564 None:intergenic 30.0%
!! AATATCTCGTTTGAGTTGTT+AGG + chr3_3:18882546-18882565 None:intergenic 30.0%
AATTAAGAAAGGGGAAAGAA+AGG + chr3_3:18882702-18882721 None:intergenic 30.0%
AACGATAACAGTAGCAAAAT+TGG + chr3_3:18882758-18882777 None:intergenic 30.0%
!!! CTGTTATCGTTTTTTATTCC+TGG - chr3_3:18882767-18882786 Msa0445130:three_prime_UTR 30.0%
!!! ATTCCTGGGTTTTTGTTTTT+TGG - chr3_3:18882782-18882801 Msa0445130:three_prime_UTR 30.0%
GCTTAGTTATAAAGCACAAA+CGG + chr3_3:18882974-18882993 None:intergenic 30.0%
AAGCTATAAGCTCAAATTTG+TGG + chr3_3:18882996-18883015 None:intergenic 30.0%
GACATAAGCTATAACTCATT+TGG + chr3_3:18883144-18883163 None:intergenic 30.0%
TTTACCCTTGTAGACTTAAT+TGG - chr3_3:18883303-18883322 Msa0445130:intron 30.0%
!! GTTTTAAATCGCTGTTGTAA+TGG - chr3_3:18883402-18883421 Msa0445130:intron 30.0%
AAGGAATTGTTAACATCATG+AGG + chr3_3:18883530-18883549 None:intergenic 30.0%
GATGTTAACAATTCCTTTGT+CGG - chr3_3:18883533-18883552 Msa0445130:intron 30.0%
ATGTTAACAATTCCTTTGTC+GGG - chr3_3:18883534-18883553 Msa0445130:intron 30.0%
! AGGTTTTCAATATTTCCTAG+CGG + chr3_3:18883685-18883704 None:intergenic 30.0%
TATTGAAAACCTTAATGTGG+TGG - chr3_3:18883693-18883712 Msa0445130:intron 30.0%
ACAAGAGAATCAAATTGAAC+AGG + chr3_3:18883877-18883896 None:intergenic 30.0%
AACAATGTTCTTAGGAGTTA+GGG + chr3_3:18883931-18883950 None:intergenic 30.0%
AAACAATGTTCTTAGGAGTT+AGG + chr3_3:18883932-18883951 None:intergenic 30.0%
ACTCCTAAGAACATTGTTTA+AGG - chr3_3:18883933-18883952 Msa0445130:CDS 30.0%
TTTGTTAAGAAGGGAGAAAA+TGG - chr3_3:18884066-18884085 Msa0445130:intron 30.0%
TTGTTAAGAAGGGAGAAAAT+GGG - chr3_3:18884067-18884086 Msa0445130:intron 30.0%
TAAGGTAGGTAAAGTTTGTA+GGG - chr3_3:18884199-18884218 Msa0445130:intron 30.0%
TAGCAGAAAAATATAGACTC+GGG + chr3_3:18884361-18884380 None:intergenic 30.0%
TATATGTCACATATGAAGAC+AGG + chr3_3:18884488-18884507 None:intergenic 30.0%
TGTCTTCATATGTGACATAT+AGG - chr3_3:18884487-18884506 Msa0445130:intron 30.0%
TCACTGAATTTAGTAATTCC+TGG + chr3_3:18884961-18884980 None:intergenic 30.0%
GGAATTACTAAATTCAGTGA+AGG - chr3_3:18884961-18884980 Msa0445130:CDS 30.0%
CTAAACTTGAACAACTCTAT+AGG - chr3_3:18885108-18885127 Msa0445130:intron 30.0%
GCAACAGTTAAATAAGTAAG+AGG + chr3_3:18885531-18885550 None:intergenic 30.0%
ACCATCTCAAGTAAAGAAAA+AGG - chr3_3:18885853-18885872 Msa0445130:CDS 30.0%
! TCCTTTTTCTTTACTTGAGA+TGG + chr3_3:18885857-18885876 None:intergenic 30.0%
AGAAAAAGGAATCTCATTTG+GGG - chr3_3:18885867-18885886 Msa0445130:CDS 30.0%
! GGGAAATTTAACAACTGTTT+TGG - chr3_3:18885919-18885938 Msa0445130:CDS 30.0%
TGAGAGAAGTTTACGTATTA+AGG + chr3_3:18886202-18886221 None:intergenic 30.0%
CTGCATAATAAAGTTTACTG+AGG + chr3_3:18886356-18886375 None:intergenic 30.0%
!! GATATGATGTTCTAAGAATG+AGG - chr3_3:18886531-18886550 Msa0445130:intron 30.0%
!! TATGATGTTCTAAGAATGAG+GGG - chr3_3:18886533-18886552 Msa0445130:intron 30.0%
!!! ACCTATCTGTTCTATTTTTG+TGG - chr3_3:18886687-18886706 Msa0445130:intron 30.0%
ACCACAAAAATAGAACAGAT+AGG + chr3_3:18886691-18886710 None:intergenic 30.0%
CTTAATTCTGTTGAAGAACA+AGG - chr3_3:18886920-18886939 Msa0445130:intron 30.0%
TAGACTTGAGCATTTACTTA+CGG - chr3_3:18887000-18887019 Msa0445130:intron 30.0%
TCCCTAATTATCAAATTGCT+TGG - chr3_3:18887478-18887497 Msa0445130:intron 30.0%
AGCATATAATTATCGCGTAA+TGG + chr3_3:18887566-18887585 None:intergenic 30.0%
AAGTTCGAGAATAAAGGATT+GGG - chr3_3:18887589-18887608 Msa0445130:intron 30.0%
CTCATTACGTTACTAAAGAA+TGG - chr3_3:18887843-18887862 Msa0445130:intron 30.0%
ACGTTACTAAAGAATGGAAT+TGG - chr3_3:18887849-18887868 Msa0445130:intron 30.0%
!! AATTGGTTGGTTTATACCAA+AGG + chr3_3:18887900-18887919 None:intergenic 30.0%
TTCATCATGTTCAGTAACTT+TGG + chr3_3:18887941-18887960 None:intergenic 30.0%
!! TTTGAGTTGTTAGGGGTTAA+GGG + chr3_3:18882537-18882556 None:intergenic 35.0%
!! TATCTCGTTTGAGTTGTTAG+GGG + chr3_3:18882544-18882563 None:intergenic 35.0%
GTGATAACTGTAGAGATGAA+CGG + chr3_3:18882634-18882653 None:intergenic 35.0%
CAGTTATCACAAACTCTCAA+CGG - chr3_3:18882644-18882663 Msa0445130:three_prime_UTR 35.0%
TACCAGATGCTGAAAAGAAA+CGG + chr3_3:18882678-18882697 None:intergenic 35.0%
ACACCAAAAAACAAAAACCC+AGG + chr3_3:18882788-18882807 None:intergenic 35.0%
TAAAGCACAAACGGAAACAA+AGG + chr3_3:18882965-18882984 None:intergenic 35.0%
AAGCTATAACTCATTTGGGT+TGG + chr3_3:18883139-18883158 None:intergenic 35.0%
!! AGAAAGTGTCGGTTATCAAA+CGG + chr3_3:18883194-18883213 None:intergenic 35.0%
TTAAATCGCTGTTGTAATGG+CGG - chr3_3:18883405-18883424 Msa0445130:intron 35.0%
TCCTTGATATTGTAACCTTC+AGG - chr3_3:18883439-18883458 Msa0445130:intron 35.0%
CCTTGATATTGTAACCTTCA+GGG - chr3_3:18883440-18883459 Msa0445130:intron 35.0%
CTTGATATTGTAACCTTCAG+GGG - chr3_3:18883441-18883460 Msa0445130:intron 35.0%
!! CTCTGGATTAGTTAGTTCTT+AGG - chr3_3:18883621-18883640 Msa0445130:intron 35.0%
AAAAAAAAAAAGCTGCCGCT+AGG - chr3_3:18883667-18883686 Msa0445130:intron 35.0%
!! GAAAATGGGATTTTAGCAGT+TGG - chr3_3:18884081-18884100 Msa0445130:intron 35.0%
!! GGATTTTAGCAGTTGGAATT+TGG - chr3_3:18884088-18884107 Msa0445130:intron 35.0%
GTAAGGTAGGTAAAGTTTGT+AGG - chr3_3:18884198-18884217 Msa0445130:intron 35.0%
AAGGTAGGTAAAGTTTGTAG+GGG - chr3_3:18884200-18884219 Msa0445130:intron 35.0%
AGCAGAAAAATATAGACTCG+GGG + chr3_3:18884360-18884379 None:intergenic 35.0%
TTTCACCAAAAATAAGCACG+TGG - chr3_3:18884801-18884820 Msa0445130:intron 35.0%
AAGATCTATCCGAAGATGAA+GGG - chr3_3:18884842-18884861 Msa0445130:intron 35.0%
TTCTTGTGATCTGACAATAC+TGG + chr3_3:18885136-18885155 None:intergenic 35.0%
! TCTTGTTATAGAAAAGCTCG+CGG - chr3_3:18885156-18885175 Msa0445130:intron 35.0%
GACAAAAAAGGAAAAGCTGA+TGG - chr3_3:18885210-18885229 Msa0445130:intron 35.0%
TTGTTACAGCTAGCAGAAAA+GGG - chr3_3:18885364-18885383 Msa0445130:intron 35.0%
TGTCACACCTGCTAATTATT+TGG - chr3_3:18885390-18885409 Msa0445130:intron 35.0%
TTTAACTGTTGCTGTGAACA+TGG - chr3_3:18885539-18885558 Msa0445130:CDS 35.0%
CTACTTCTGATTTCTTTCAG+TGG - chr3_3:18885563-18885582 Msa0445130:CDS 35.0%
ACAAAGAGAGGAGGAAAATT+TGG + chr3_3:18885643-18885662 None:intergenic 35.0%
!! GTTTTATACACACTTGTTGC+AGG - chr3_3:18885695-18885714 Msa0445130:CDS 35.0%
CTGTCAGTGTTATCAAATAG+TGG - chr3_3:18885964-18885983 Msa0445130:CDS 35.0%
TATAGATGCTACAACCACTA+TGG + chr3_3:18886064-18886083 None:intergenic 35.0%
ATAGTGGTTGTAGCATCTAT+AGG - chr3_3:18886063-18886082 Msa0445130:CDS 35.0%
TAGTGGTTGTAGCATCTATA+GGG - chr3_3:18886064-18886083 Msa0445130:CDS 35.0%
AAAAAAAATGTGGCAGAGCA+TGG + chr3_3:18886234-18886253 None:intergenic 35.0%
!! TTTTAAAGAGGCAGCATGTT+TGG - chr3_3:18886311-18886330 Msa0445130:intron 35.0%
AAATAGAAGACGTAGCATAG+TGG + chr3_3:18886415-18886434 None:intergenic 35.0%
!! TAGAGGATAGTGGAAAATAG+TGG + chr3_3:18886458-18886477 None:intergenic 35.0%
GTGTTATCAATAGAGGATAG+TGG + chr3_3:18886468-18886487 None:intergenic 35.0%
TCACAAACAAATCTTCAGCA+TGG + chr3_3:18886513-18886532 None:intergenic 35.0%
TGTTGAAAAATAAGAGGGGT+CGG - chr3_3:18886591-18886610 Msa0445130:intron 35.0%
TGAAACCTAAAACTCTGACA+GGG + chr3_3:18886650-18886669 None:intergenic 35.0%
ATGAAACCTAAAACTCTGAC+AGG + chr3_3:18886651-18886670 None:intergenic 35.0%
! TCGTTCAGTCAGTTTTTCAT+TGG - chr3_3:18886855-18886874 Msa0445130:intron 35.0%
GTTCTTCAACAGAATTAAGC+AGG + chr3_3:18886919-18886938 None:intergenic 35.0%
TGTTCAAAGTTCATCCAGTT+TGG + chr3_3:18887307-18887326 None:intergenic 35.0%
! TTTGATAATTAGGGACACGA+TGG + chr3_3:18887473-18887492 None:intergenic 35.0%
CAAGTTCGAGAATAAAGGAT+TGG - chr3_3:18887588-18887607 Msa0445130:intron 35.0%
AGTAACGTAATGAGCAGAAA+TGG + chr3_3:18887837-18887856 None:intergenic 35.0%
ATGGAATTGGAGAAACTTGA+TGG - chr3_3:18887862-18887881 Msa0445130:intron 35.0%
!! CCAAGCTTTCGATTACTTTT+CGG + chr3_3:18888037-18888056 None:intergenic 35.0%
ATTATTTCGTCGTAGGGTAT+TGG - chr3_3:18888109-18888128 Msa0445130:intron 35.0%
!! GTTTGAGTTGTTAGGGGTTA+AGG + chr3_3:18882538-18882557 None:intergenic 40.0%
GAAACTGTGAAGCTAGGTTT+CGG + chr3_3:18882604-18882623 None:intergenic 40.0%
ATAACTGTAGAGATGAACGG+CGG + chr3_3:18882631-18882650 None:intergenic 40.0%
!! GAAAGTGTCGGTTATCAAAC+GGG + chr3_3:18883193-18883212 None:intergenic 40.0%
! ATAAGCTCGTGAGAAAGTGT+CGG + chr3_3:18883205-18883224 None:intergenic 40.0%
CCCTGAAGGTTACAATATCA+AGG + chr3_3:18883443-18883462 None:intergenic 40.0%
ATATTGTAACCTTCAGGGGT+TGG - chr3_3:18883445-18883464 Msa0445130:intron 40.0%
AAGCAAATCCCTATATGGAC+TGG + chr3_3:18883560-18883579 None:intergenic 40.0%
! GTCCATATAGGGATTTGCTT+TGG - chr3_3:18883560-18883579 Msa0445130:intron 40.0%
AGCCAAAGCAAATCCCTATA+TGG + chr3_3:18883565-18883584 None:intergenic 40.0%
!! GGATTAGTTAGTTCTTAGGC+CGG - chr3_3:18883625-18883644 Msa0445130:intron 40.0%
! AATGTCTACGGTAACCGTTT+TGG + chr3_3:18883719-18883738 None:intergenic 40.0%
! GTCAAAGCATCCCTAAAAGA+TGG + chr3_3:18883766-18883785 None:intergenic 40.0%
! GGGATGCTTTGACTTATGAT+TGG - chr3_3:18883773-18883792 Msa0445130:intron 40.0%
ATTCCATCATGTGACTCCTT+GGG - chr3_3:18883845-18883864 Msa0445130:intron 40.0%
GGGAGGTTTAGAGAAAAACA+AGG - chr3_3:18884220-18884239 Msa0445130:intron 40.0%
! TACTTGACTTTTTACGGCCT+TGG + chr3_3:18884597-18884616 None:intergenic 40.0%
TTAACTTTCTTCTGTCCGTG+TGG + chr3_3:18884643-18884662 None:intergenic 40.0%
!! TTCCTCCACGTGCTTATTTT+TGG + chr3_3:18884809-18884828 None:intergenic 40.0%
GAAGATCTATCCGAAGATGA+AGG - chr3_3:18884841-18884860 Msa0445130:intron 40.0%
AGATCTATCCGAAGATGAAG+GGG - chr3_3:18884843-18884862 Msa0445130:intron 40.0%
! GTGAAGGTTGTAAAGCATTC+AGG - chr3_3:18884977-18884996 Msa0445130:CDS 40.0%
! AGGTTGTAAAGCATTCAGGA+TGG - chr3_3:18884981-18885000 Msa0445130:CDS 40.0%
! GAGTGTTTCTGATGAGTTGT+TGG - chr3_3:18885026-18885045 Msa0445130:intron 40.0%
! TGATGAGTTGTTGGTAAGCT+AGG - chr3_3:18885035-18885054 Msa0445130:intron 40.0%
GATCAAGGGAGAGACAAAAA+AGG - chr3_3:18885198-18885217 Msa0445130:intron 40.0%
CTTGTTACAGCTAGCAGAAA+AGG - chr3_3:18885363-18885382 Msa0445130:intron 40.0%
! CTTATAAGTGTCGCGACAAA+AGG - chr3_3:18885430-18885449 Msa0445130:intron 40.0%
TCATACAAAGCGACAAAGAG+AGG + chr3_3:18885655-18885674 None:intergenic 40.0%
! AAAGCTCAAGTTGCTCAGAA+AGG - chr3_3:18885723-18885742 Msa0445130:CDS 40.0%
! AAGCTCAAGTTGCTCAGAAA+GGG - chr3_3:18885724-18885743 Msa0445130:CDS 40.0%
TTTGCATCCCTGTTCTTTGA+GGG + chr3_3:18885756-18885775 None:intergenic 40.0%
TCAAAGAACAGGGATGCAAA+GGG - chr3_3:18885756-18885775 Msa0445130:CDS 40.0%
GTGGAATAGCATAGCATTGT+AGG + chr3_3:18886439-18886458 None:intergenic 40.0%
GTTGAAAAATAAGAGGGGTC+GGG - chr3_3:18886592-18886611 Msa0445130:intron 40.0%
! TGGTTCTATTTGGAGAAGCA+TGG + chr3_3:18886626-18886645 None:intergenic 40.0%
! AAGCCTTCTTTTCAGCGTTA+GGG - chr3_3:18886791-18886810 Msa0445130:intron 40.0%
AACAGAATTAAGCAGGACTC+GGG + chr3_3:18886912-18886931 None:intergenic 40.0%
CAACAGAATTAAGCAGGACT+CGG + chr3_3:18886913-18886932 None:intergenic 40.0%
AGCATTTACTTACGGACACT+TGG - chr3_3:18887008-18887027 Msa0445130:intron 40.0%
GCATTTACTTACGGACACTT+GGG - chr3_3:18887009-18887028 Msa0445130:intron 40.0%
GCTTAGACAAATTGCCAAAC+TGG - chr3_3:18887290-18887309 Msa0445130:intron 40.0%
TTGCTTGGATTTGGATATGC+AGG - chr3_3:18887493-18887512 Msa0445130:intron 40.0%
AGAGGATGAACAACCTTCTT+GGG - chr3_3:18887538-18887557 Msa0445130:intron 40.0%
GCTGACAAGTTCGAGAATAA+AGG - chr3_3:18887583-18887602 Msa0445130:intron 40.0%
TGAGCAACATGATGAGTACA+AGG + chr3_3:18887671-18887690 None:intergenic 40.0%
TTCATCGGAACTGCTATCTT+GGG + chr3_3:18887735-18887754 None:intergenic 40.0%
AGCAGTTCCGATGAAGATTA+AGG - chr3_3:18887740-18887759 Msa0445130:intron 40.0%
!! CGTGTTTCTAGTGGGATAAT+CGG - chr3_3:18887790-18887809 Msa0445130:intron 40.0%
CCGAAAAGTAATCGAAAGCT+TGG - chr3_3:18888034-18888053 Msa0445130:intron 40.0%
GTTGTTAGGGGTTAAGGGAA+GGG + chr3_3:18882532-18882551 None:intergenic 45.0%
AGTTGTTAGGGGTTAAGGGA+AGG + chr3_3:18882533-18882552 None:intergenic 45.0%
GGAGTTGAAACTGTGAAGCT+AGG + chr3_3:18882610-18882629 None:intergenic 45.0%
! CTCCGTTTCTTTTCAGCATC+TGG - chr3_3:18882673-18882692 Msa0445130:three_prime_UTR 45.0%
TAACCCACCTGAATTGACAC+TGG - chr3_3:18883049-18883068 Msa0445130:intron 45.0%
AACCCACCTGAATTGACACT+GGG - chr3_3:18883050-18883069 Msa0445130:intron 45.0%
ATTCTCCCCAGTGTCAATTC+AGG + chr3_3:18883059-18883078 None:intergenic 45.0%
TTGAACCTGTGACCTCAAAG+AGG - chr3_3:18883078-18883097 Msa0445130:intron 45.0%
!! ATAACTCATTTGGGTTGGCC+TGG + chr3_3:18883134-18883153 None:intergenic 45.0%
CTGCGTGTTTGTCATCATTG+AGG - chr3_3:18883380-18883399 Msa0445130:intron 45.0%
! ATGAGAGTGTGTTCCTCTCA+AGG - chr3_3:18883490-18883509 Msa0445130:intron 45.0%
TGTGTTCCTCTCAAGGTTCT+GGG - chr3_3:18883497-18883516 Msa0445130:intron 45.0%
! CTTCAATTGCGCCTTGTTAG+TGG - chr3_3:18883583-18883602 Msa0445130:intron 45.0%
! AATTGCGCCTTGTTAGTGGA+CGG - chr3_3:18883587-18883606 Msa0445130:intron 45.0%
AATCCAACCGTCCACTAACA+AGG + chr3_3:18883597-18883616 None:intergenic 45.0%
CCTTAATGTGGTGGCCAAAA+CGG - chr3_3:18883702-18883721 Msa0445130:intron 45.0%
GATTCCATCATGTGACTCCT+TGG - chr3_3:18883844-18883863 Msa0445130:intron 45.0%
!! ACCGTTCTACTAGTTTGCTG+TGG - chr3_3:18884003-18884022 Msa0445130:intron 45.0%
GCCACAGCAAACTAGTAGAA+CGG + chr3_3:18884007-18884026 None:intergenic 45.0%
GTAGGTAAAGTTTGTAGGGG+AGG - chr3_3:18884203-18884222 Msa0445130:intron 45.0%
CATGGCTGAAGAAACACAAG+TGG - chr3_3:18884528-18884547 Msa0445130:intron 45.0%
GAAACACAAGTGGTTGAGCA+TGG - chr3_3:18884538-18884557 Msa0445130:intron 45.0%
TGGGAAAGAGGAAGTTTGGT+AGG - chr3_3:18884569-18884588 Msa0445130:intron 45.0%
AGGAAGTTTGGTAGGAACCA+AGG - chr3_3:18884577-18884596 Msa0445130:intron 45.0%
! TGTGGTGGCTTCATCACTTT+TGG + chr3_3:18884625-18884644 None:intergenic 45.0%
AAAGTGATGAAGCCACCACA+CGG - chr3_3:18884625-18884644 Msa0445130:intron 45.0%
TTCTAGTACTCCCAGTAGCA+GGG + chr3_3:18884747-18884766 None:intergenic 45.0%
!! TACTGGGAGTACTAGAAGTG+TGG - chr3_3:18884750-18884769 Msa0445130:intron 45.0%
GTGGCATCTATGAAGACTAG+AGG - chr3_3:18884769-18884788 Msa0445130:intron 45.0%
CACCAAAAATAAGCACGTGG+AGG - chr3_3:18884804-18884823 Msa0445130:intron 45.0%
TTCTGCTACCCCTTCATCTT+CGG + chr3_3:18884854-18884873 None:intergenic 45.0%
! CTCTGAGGATGAAGATGATG+AGG - chr3_3:18884921-18884940 Msa0445130:intron 45.0%
TGAGGATGAAGATGATGAGG+AGG - chr3_3:18884924-18884943 Msa0445130:intron 45.0%
TATAGAAAAGCTCGCGGAAG+AGG - chr3_3:18885162-18885181 Msa0445130:intron 45.0%
TATCTATCGGGTAAGCAGTC+TGG - chr3_3:18885323-18885342 Msa0445130:CDS 45.0%
TGCGCGTCCAAATAATTAGC+AGG + chr3_3:18885400-18885419 None:intergenic 45.0%
! ATAAGTGTCGCGACAAAAGG+AGG - chr3_3:18885433-18885452 Msa0445130:intron 45.0%
TACAAAGCGACAAAGAGAGG+AGG + chr3_3:18885652-18885671 None:intergenic 45.0%
TTGCATCCCTGTTCTTTGAG+GGG + chr3_3:18885755-18885774 None:intergenic 45.0%
CTTTGCATCCCTGTTCTTTG+AGG + chr3_3:18885757-18885776 None:intergenic 45.0%
CTCAAAGAACAGGGATGCAA+AGG - chr3_3:18885755-18885774 Msa0445130:CDS 45.0%
TGAGCTGCATACAACCTCTT+TGG - chr3_3:18886030-18886049 Msa0445130:CDS 45.0%
GAGCTGCATACAACCTCTTT+GGG - chr3_3:18886031-18886050 Msa0445130:CDS 45.0%
ATACAACCTCTTTGGGCCTT+TGG - chr3_3:18886038-18886057 Msa0445130:CDS 45.0%
ATCCTCCTCACTGGAAATAG+AGG + chr3_3:18886273-18886292 None:intergenic 45.0%
! CTGACAGGGATGGTTCTATT+TGG + chr3_3:18886636-18886655 None:intergenic 45.0%
! ACCATCCCTGTCAGAGTTTT+AGG - chr3_3:18886642-18886661 Msa0445130:intron 45.0%
ACCTAAAACTCTGACAGGGA+TGG + chr3_3:18886646-18886665 None:intergenic 45.0%
CGCTGAAAAGAAGGCTTCTT+TGG + chr3_3:18886788-18886807 None:intergenic 45.0%
! GAAGCCTTCTTTTCAGCGTT+AGG - chr3_3:18886790-18886809 Msa0445130:intron 45.0%
CTTCCCTAACGCTGAAAAGA+AGG + chr3_3:18886797-18886816 None:intergenic 45.0%
ATCACCTTTGCACCAATAGC+TGG + chr3_3:18886820-18886839 None:intergenic 45.0%
GAGAGGATGAACAACCTTCT+TGG - chr3_3:18887537-18887556 Msa0445130:intron 45.0%
CATGATGAGTACAAGGTAGC+TGG + chr3_3:18887664-18887683 None:intergenic 45.0%
TCATCATGTTGCTCAACTGC+AGG - chr3_3:18887676-18887695 Msa0445130:intron 45.0%
CATCATGTTGCTCAACTGCA+GGG - chr3_3:18887677-18887696 Msa0445130:intron 45.0%
CTTCATCGGAACTGCTATCT+TGG + chr3_3:18887736-18887755 None:intergenic 45.0%
!! AGCATCAGCGTGTTTCTAGT+GGG - chr3_3:18887782-18887801 Msa0445130:intron 45.0%
! GGAGAAACTTGATGGCTGAT+TGG - chr3_3:18887870-18887889 Msa0445130:intron 45.0%
! AAACTTGATGGCTGATTGGC+TGG - chr3_3:18887874-18887893 Msa0445130:intron 45.0%
!!! TTTATTTATTTTGATTTTAT+TGG - chr3_3:18882871-18882890 Msa0445130:three_prime_UTR 5.0%
!!! TTTTTTTAATTTGAAAAATT+TGG + chr3_3:18883654-18883673 None:intergenic 5.0%
!!! ATATTATTTTCTTTTTTATT+AGG - chr3_3:18887236-18887255 Msa0445130:intron 5.0%
ACCCACCTGAATTGACACTG+GGG - chr3_3:18883051-18883070 Msa0445130:intron 50.0%
TCCCCAGTGTCAATTCAGGT+GGG + chr3_3:18883055-18883074 None:intergenic 50.0%
GTGTGTTCCTCTCAAGGTTC+TGG - chr3_3:18883496-18883515 Msa0445130:intron 50.0%
TTCGAACCCAGAACCTTGAG+AGG + chr3_3:18883506-18883525 None:intergenic 50.0%
!! TATATGGACTGGCCCGACAA+AGG + chr3_3:18883549-18883568 None:intergenic 50.0%
TTTGTCGGGCCAGTCCATAT+AGG - chr3_3:18883548-18883567 Msa0445130:intron 50.0%
TTGTCGGGCCAGTCCATATA+GGG - chr3_3:18883549-18883568 Msa0445130:intron 50.0%
! GGACGGTTGGATTGATTCTC+TGG - chr3_3:18883604-18883623 Msa0445130:intron 50.0%
!! CCGTTTTGGCCACCACATTA+AGG + chr3_3:18883705-18883724 None:intergenic 50.0%
TGACCCAAGGAGTCACATGA+TGG + chr3_3:18883851-18883870 None:intergenic 50.0%
ATCATGTGACTCCTTGGGTC+AGG - chr3_3:18883850-18883869 Msa0445130:intron 50.0%
TCATGTGACTCCTTGGGTCA+GGG - chr3_3:18883851-18883870 Msa0445130:intron 50.0%
GTTGAGCATGGAAGTGAGCT+GGG - chr3_3:18884550-18884569 Msa0445130:intron 50.0%
ATGGAAGTGAGCTGGGAAAG+AGG - chr3_3:18884557-18884576 Msa0445130:intron 50.0%
GAGCTGGGAAAGAGGAAGTT+TGG - chr3_3:18884565-18884584 Msa0445130:intron 50.0%
ACTTTCTTCTGTCCGTGTGG+TGG + chr3_3:18884640-18884659 None:intergenic 50.0%
TCTAGTACTCCCAGTAGCAG+GGG + chr3_3:18884746-18884765 None:intergenic 50.0%
CTTCTAGTACTCCCAGTAGC+AGG + chr3_3:18884748-18884767 None:intergenic 50.0%
GAAGATGAAGGGGTAGCAGA+AGG - chr3_3:18884853-18884872 Msa0445130:intron 50.0%
GAGACAGAGCGCAAGATCAA+GGG - chr3_3:18885184-18885203 Msa0445130:intron 50.0%
! TCAAGTTGCTCAGAAAGGGC+TGG - chr3_3:18885728-18885747 Msa0445130:CDS 50.0%
GCTACAACCACTATGGCCAA+AGG + chr3_3:18886057-18886076 None:intergenic 50.0%
CTCACTGGAAATAGAGGAGG+AGG + chr3_3:18886267-18886286 None:intergenic 50.0%
CTCCTCCTCTATTTCCAGTG+AGG - chr3_3:18886265-18886284 Msa0445130:intron 50.0%
CTCCTCACTGGAAATAGAGG+AGG + chr3_3:18886270-18886289 None:intergenic 50.0%
CTCCTCTATTTCCAGTGAGG+AGG - chr3_3:18886268-18886287 Msa0445130:intron 50.0%
TGAAGGATCATCCTCCTCAC+TGG + chr3_3:18886282-18886301 None:intergenic 50.0%
AAATAAGAGGGGTCGGGACT+TGG - chr3_3:18886598-18886617 Msa0445130:intron 50.0%
AATAAGAGGGGTCGGGACTT+GGG - chr3_3:18886599-18886618 Msa0445130:intron 50.0%
GAAGCCAGCTATTGGTGCAA+AGG - chr3_3:18886813-18886832 Msa0445130:intron 50.0%
!! CAGCATCAGCGTGTTTCTAG+TGG - chr3_3:18887781-18887800 Msa0445130:intron 50.0%
GAAGCTAGGTTTCGGAGCGT+CGG + chr3_3:18882596-18882615 None:intergenic 55.0%
CTCCCCAGTGTCAATTCAGG+TGG + chr3_3:18883056-18883075 None:intergenic 55.0%
!! GTGCTCCTCTTTGAGGTCAC+AGG + chr3_3:18883086-18883105 None:intergenic 55.0%
! TGGGAGTGTGCTCCTCTTTG+AGG + chr3_3:18883093-18883112 None:intergenic 55.0%
!! GTGGTATTGGCTTGGGGTCT+GGG + chr3_3:18883112-18883131 None:intergenic 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG + chr3_3:18883119-18883138 None:intergenic 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG + chr3_3:18883120-18883139 None:intergenic 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG + chr3_3:18883125-18883144 None:intergenic 55.0%
!! ACTCATTTGGGTTGGCCTGG+TGG + chr3_3:18883131-18883150 None:intergenic 55.0%
! TTGGCGTGGTAGTGTAGGCT+TGG - chr3_3:18883464-18883483 Msa0445130:intron 55.0%
! TGGCGTGGTAGTGTAGGCTT+GGG - chr3_3:18883465-18883484 Msa0445130:intron 55.0%
ATTGAACAGGCCCTGACCCA+AGG + chr3_3:18883864-18883883 None:intergenic 55.0%
GGTTGAGCATGGAAGTGAGC+TGG - chr3_3:18884549-18884568 Msa0445130:intron 55.0%
AGACAACTGCCCCTGCTACT+GGG - chr3_3:18884734-18884753 Msa0445130:intron 55.0%
GAGGAGGATGAGATTCAGCC+AGG - chr3_3:18884940-18884959 Msa0445130:intron 55.0%
GGAGACAGAGCGCAAGATCA+AGG - chr3_3:18885183-18885202 Msa0445130:intron 55.0%
GCTGGACCCCTCAAAGAACA+GGG - chr3_3:18885746-18885765 Msa0445130:CDS 55.0%
CTATGGCCAAAGGCCCAAAG+AGG + chr3_3:18886047-18886066 None:intergenic 55.0%
CTTTGGGCCTTTGGCCATAG+TGG - chr3_3:18886047-18886066 Msa0445130:CDS 55.0%
GCGTTAGGGAAGCCAGCTAT+TGG - chr3_3:18886805-18886824 Msa0445130:intron 55.0%
! TCGCGTAATGGAGCCCAAGA+AGG + chr3_3:18887554-18887573 None:intergenic 55.0%
!! ATGGCTGATTGGCTGGCCTT+TGG - chr3_3:18887881-18887900 Msa0445130:intron 55.0%
!! GGTGGTATTGGCTTGGGGTC+TGG + chr3_3:18883113-18883132 None:intergenic 60.0%
GACCCCAAGCCAATACCACC+AGG - chr3_3:18883113-18883132 Msa0445130:CDS 60.0%
!! GGCCTGGTGGTATTGGCTTG+GGG + chr3_3:18883118-18883137 None:intergenic 60.0%
! GTAACCTTCAGGGGTTGGCG+TGG - chr3_3:18883450-18883469 Msa0445130:intron 60.0%
ACTACCACGCCAACCCCTGA+AGG + chr3_3:18883457-18883476 None:intergenic 60.0%
! AGGGGTTGGCGTGGTAGTGT+AGG - chr3_3:18883459-18883478 Msa0445130:intron 60.0%
! GCGCCTTGTTAGTGGACGGT+TGG - chr3_3:18883591-18883610 Msa0445130:intron 60.0%
GAGACAACTGCCCCTGCTAC+TGG - chr3_3:18884733-18884752 Msa0445130:intron 60.0%
GGCTGGACCCCTCAAAGAAC+AGG - chr3_3:18885745-18885764 Msa0445130:CDS 60.0%
TCGGAGCAGTGACAGCGGCT+GGG + chr3_3:18882577-18882596 None:intergenic 65.0%
!! GAGCGTCGGAGCAGTGACAG+CGG + chr3_3:18882582-18882601 None:intergenic 65.0%
GTCGGAGCAGTGACAGCGGC+TGG + chr3_3:18882578-18882597 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 18882521 18888216 18882521 ID=Msa0445130;Name=Msa0445130
chr3_3 mRNA 18882521 18888216 18882521 ID=Msa0445130-mRNA-1;Parent=Msa0445130;Name=Msa0445130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=157|1|1|1|0.77|0.7|10|456|340
chr3_3 exon 18882521 18883039 18882521 ID=Msa0445130-mRNA-1:exon:4036;Parent=Msa0445130-mRNA-1
chr3_3 exon 18883112 18883222 18883112 ID=Msa0445130-mRNA-1:exon:4035;Parent=Msa0445130-mRNA-1
chr3_3 exon 18883903 18883967 18883903 ID=Msa0445130-mRNA-1:exon:4034;Parent=Msa0445130-mRNA-1
chr3_3 exon 18884960 18885020 18884960 ID=Msa0445130-mRNA-1:exon:4033;Parent=Msa0445130-mRNA-1
chr3_3 exon 18885135 18885154 18885135 ID=Msa0445130-mRNA-1:exon:4032;Parent=Msa0445130-mRNA-1
chr3_3 exon 18885283 18885364 18885283 ID=Msa0445130-mRNA-1:exon:4031;Parent=Msa0445130-mRNA-1
chr3_3 exon 18885506 18885607 18885506 ID=Msa0445130-mRNA-1:exon:4030;Parent=Msa0445130-mRNA-1
chr3_3 exon 18885690 18886228 18885690 ID=Msa0445130-mRNA-1:exon:4029;Parent=Msa0445130-mRNA-1
chr3_3 exon 18888043 18888110 18888043 ID=Msa0445130-mRNA-1:exon:4028;Parent=Msa0445130-mRNA-1
chr3_3 exon 18888148 18888216 18888148 ID=Msa0445130-mRNA-1:exon:4027;Parent=Msa0445130-mRNA-1
chr3_3 five_prime_UTR 18888148 18888216 18888148 ID=Msa0445130-mRNA-1:five_prime_utr;Parent=Msa0445130-mRNA-1
chr3_3 five_prime_UTR 18888043 18888110 18888043 ID=Msa0445130-mRNA-1:five_prime_utr;Parent=Msa0445130-mRNA-1
chr3_3 five_prime_UTR 18886209 18886228 18886209 ID=Msa0445130-mRNA-1:five_prime_utr;Parent=Msa0445130-mRNA-1
chr3_3 CDS 18885690 18886208 18885690 ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1
chr3_3 CDS 18885506 18885607 18885506 ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1
chr3_3 CDS 18885283 18885364 18885283 ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1
chr3_3 CDS 18885135 18885154 18885135 ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1
chr3_3 CDS 18884960 18885020 18884960 ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1
chr3_3 CDS 18883903 18883967 18883903 ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1
chr3_3 CDS 18883112 18883222 18883112 ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1
chr3_3 CDS 18882977 18883039 18882977 ID=Msa0445130-mRNA-1:cds;Parent=Msa0445130-mRNA-1
chr3_3 three_prime_UTR 18882521 18882976 18882521 ID=Msa0445130-mRNA-1:three_prime_utr;Parent=Msa0445130-mRNA-1
Gene Sequence

>Msa0445130

ATGGCTGAAGAAACACAAGTGGTTGAGCATGGAAGTGAGCTGGGAAAGAGGAAGTTTGGTAGGAACCAAGGCCGTAAAAAGTCAAGTAAGAAACCAAAAGTGATGAAGCCACCACACGGACAGAAGAAAGTTAAAATCAACCAACAAATGAAGAAACTTTACAACAAGCGAGCACGCGAGTATAATTCTGATGATGATGAAGATGAGACAACTGCCCCTGCTACTGGGAGTACTAGAAGTGTGGCATCTATGAAGACTAGAGGCGTCGCATCTTTCACCAAAAATAAGCACGTGGAGGAAGACATAGAAAGTGAAGATCTATCCGAAGATGAAGGGGTAGCAGAAGGACAAAGAACACAGAAGAAGCATGTTACTGATAAGAAAGTTAATTTCTCTGAGGATGAAGATGATGAGGAGGATGAGATTCAGCCAGGAATTACTAAATTCAGTGAAGGTTGTAAAGCATTCAGGATGGCCTTCAAGAGTATTATAAAGAAGAGTGTTTCTGATGAGTTGTTGGGTCCAGTATTGTCAGATCACAAGAATCTTGTTATAGAAAAGCTCGCGGAAGAGGAGACAGAGCGCAAGATCAAGGGAGAGACAAAAAAGGAAAAGCTGATGCTAGCAGAAAAGGGACATGTCACACCTGCTAATTATTTGGACGCGCACGAAAAGTTTCTTATAAGTGTCGCGACAAAAGGAGTGGTCAAGCTGTTCAATGCTGTCAACAAAGCTCAAGTTGCTCAGAAAGGGCTGGACCCCTCAAAGAACAGGGATGCAAAGGTTATAAAGAAGCGCACCAAAGAAGCCTTCTTTTCAGCGTTAGGGAAGCCAGCTATTGGTGCAAAGGCCAATGCAAGCACAAACAAGGGAGAGGATGAACAACCTTCTTGGGCTCCATTACGCGATAATTATATGCTGACAAGTTCGAGAATAAAGGATTGGGACAAAAACGCACCAGGTAAAAATGAATCAGATGACATTGAAAAGATTTCCCAAGATAGCAGTTCCGATGAAGATTAA

Protein sequence

>Msa0445130

MAEETQVVEHGSELGKRKFGRNQGRKKSSKKPKVMKPPHGQKKVKINQQMKKLYNKRAREYNSDDDEDETTAPATGSTRSVASMKTRGVASFTKNKHVEEDIESEDLSEDEGVAEGQRTQKKHVTDKKVNFSEDEDDEEDEIQPGITKFSEGCKAFRMAFKSIIKKSVSDELLGPVLSDHKNLVIEKLAEEETERKIKGETKKEKLMLAEKGHVTPANYLDAHEKFLISVATKGVVKLFNAVNKAQVAQKGLDPSKNRDAKVIKKRTKEAFFSALGKPAIGAKANASTNKGEDEQPSWAPLRDNYMLTSSRIKDWDKNAPGKNESDDIEKISQDSSSDED*