AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798440 MtrunA17_Chr5g0403031 95.652 184 8 0 1 184 1 184 3.03e-124 347
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798440 AT4G37090.1 44.974 189 92 4 1 184 1 182 4.86e-33 116
Msa0798440 AT4G37090.2 45.946 185 86 5 1 180 1 176 1.73e-26 100

Find 46 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATCGATTCAGAAAATTT+AGG 0.187077 5_3:+11185398 None:intergenic
AGAAAGAACGTCGGCGAAAA+TGG 0.201521 5_3:-11183949 Msa0798440:CDS
AAGCATTTCAACAATGCTTT+TGG 0.238659 5_3:+11183799 None:intergenic
CTATTATAGGACAGGATATA+TGG 0.259346 5_3:-11182376 Msa0798440:intron
GCTGGTTTGCTCACAATAAT+AGG 0.265535 5_3:+11183486 None:intergenic
AAGAGAAAATCCAAGGATTC+AGG 0.267478 5_3:-11183617 Msa0798440:CDS
TAATCGATTCAGAAAATTTA+GGG 0.281735 5_3:+11185399 None:intergenic
TACGTCTACTTTCCAGTTCC+GGG 0.304004 5_3:-11183365 Msa0798440:CDS
TAGTGTTTCTAGCCCTTGTT+TGG 0.308154 5_3:+11182296 None:intergenic
TTACGTCTACTTTCCAGTTC+CGG 0.332647 5_3:-11183366 Msa0798440:CDS
CCTTGGATTTCTTGAAAGAA+AGG 0.335846 5_3:-11183440 Msa0798440:CDS
TGAGGAGGAAGATAAATTAA+AGG 0.340761 5_3:-11183654 Msa0798440:CDS
AGAGATTCGAAAGATTAAAA+AGG 0.343332 5_3:-11185136 Msa0798440:CDS
CCCTACTAACCCTGAATCCT+TGG 0.350071 5_3:+11183607 None:intergenic
AGTAGTTTCACTCTCAGCTT+AGG 0.388861 5_3:-11182351 Msa0798440:three_prime_UTR
TTCAAAACAGCAGACGATCT+TGG 0.392274 5_3:+11183405 None:intergenic
AGAAATCCCACAGCAGTGTT+TGG 0.406449 5_3:+11183824 None:intergenic
GAAAGAACGTCGGCGAAAAT+GGG 0.410361 5_3:-11183948 Msa0798440:CDS
AAGGCAGTCTTTAAGCATTC+AGG 0.411790 5_3:+11183459 None:intergenic
TGTTCAGCTGTGAATTCCTC+AGG 0.416780 5_3:+11185314 None:intergenic
TGAGGAATTCACAGCTGAAC+AGG 0.425645 5_3:-11185312 Msa0798440:intron
TGTTGAAATGCTTGCAGCTA+AGG 0.442831 5_3:-11183789 Msa0798440:CDS
AGTGTTTCTAGCCCTTGTTT+GGG 0.446995 5_3:+11182297 None:intergenic
CTGGCGTATGATCCCGGAAC+TGG 0.452601 5_3:+11183353 None:intergenic
AATTAAAGGCTACCACTTCA+AGG 0.462256 5_3:-11183640 Msa0798440:CDS
TTTAAGCATTCAGGAGGAGC+TGG 0.495755 5_3:+11183468 None:intergenic
TATTATAGGACAGGATATAT+GGG 0.496862 5_3:-11182375 Msa0798440:intron
AGAGAAAATCCAAGGATTCA+GGG 0.497993 5_3:-11183616 Msa0798440:intron
TCATTTCTGGCGTATGATCC+CGG 0.513063 5_3:+11183347 None:intergenic
TTAGTAGCTTTGGATGGTCG+AGG 0.518576 5_3:+11183911 None:intergenic
GTAGTTTCACTCTCAGCTTA+GGG 0.518989 5_3:-11182350 Msa0798440:three_prime_UTR
ATCAGAATCGTTGTCTGACA+TGG 0.553832 5_3:+11185340 None:intergenic
AAGTAGACGTAATGCTTGGT+TGG 0.572908 5_3:+11183377 None:intergenic
TGAATGCTTAAAGACTGCCT+TGG 0.581346 5_3:-11183457 Msa0798440:CDS
TGGAAAGTAGACGTAATGCT+TGG 0.583915 5_3:+11183373 None:intergenic
GGGATCATACGCCAGAAATG+AGG 0.587190 5_3:-11183345 Msa0798440:exon
CCTTTCTTTCAAGAAATCCA+AGG 0.588770 5_3:+11183440 None:intergenic
GTTCAGCTGTGAATTCCTCA+GGG 0.589265 5_3:+11185315 None:intergenic
TTCAAGGAAGAGAAAATCCA+AGG 0.598658 5_3:-11183624 Msa0798440:CDS
TTTATTAACTGAGACTGATG+AGG 0.602529 5_3:-11183672 Msa0798440:CDS
ATTAACTGAGACTGATGAGG+AGG 0.608820 5_3:-11183669 Msa0798440:CDS
GCAGTCTTTAAGCATTCAGG+AGG 0.620920 5_3:+11183462 None:intergenic
AAAACAACAGGCATTTGCAA+AGG 0.630796 5_3:+11182321 None:intergenic
TTCAGCTGTGAATTCCTCAG+GGG 0.664205 5_3:+11185316 None:intergenic
CAACGATTCTGATGCCCCTG+AGG 0.672395 5_3:-11185330 Msa0798440:CDS
ATATTGAAGAGAAAGAACGT+CGG 0.783151 5_3:-11183958 Msa0798440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTTCATAAATTATTAT+GGG - chr5_3:11183521-11183540 Msa0798440:intron 10.0%
!! AACAATAAATAACTTAATAA+TGG + chr5_3:11184708-11184727 None:intergenic 10.0%
!! CTAAATTATTAAACTATAAA+AGG + chr5_3:11185283-11185302 None:intergenic 10.0%
!! ATTCATTGAAACAAATAAAT+TGG + chr5_3:11182448-11182467 None:intergenic 15.0%
!!! TTTAATTTGTTTTGTTTTTG+AGG - chr5_3:11182486-11182505 Msa0798440:intron 15.0%
!!! TTTTCAATCTTATTTTTGTT+GGG - chr5_3:11182726-11182745 Msa0798440:intron 15.0%
!!! TTTTAACATTGATAGATTAT+TGG - chr5_3:11183029-11183048 Msa0798440:intron 15.0%
!!! AAGAATTTTGATAAAAGATT+TGG - chr5_3:11183200-11183219 Msa0798440:intron 15.0%
!!! TATTTAAATTTTAACAACAC+TGG - chr5_3:11183430-11183449 Msa0798440:CDS 15.0%
!!! GTTAGTTTCATAAATTATTA+TGG - chr5_3:11183520-11183539 Msa0798440:intron 15.0%
!! ATTATTAAACTATAAAAGGT+TGG + chr5_3:11185279-11185298 None:intergenic 15.0%
!! ATAATTTAGTTATAAATGTG+AGG - chr5_3:11185294-11185313 Msa0798440:intron 15.0%
!!! TAATCGATTCAGAAAATTTA+GGG + chr5_3:11182309-11182328 None:intergenic 20.0%
!! AAATAAATTGGAATTGGAAT+TGG + chr5_3:11182436-11182455 None:intergenic 20.0%
!! TGAAACAAATAAATTGGAAT+TGG + chr5_3:11182442-11182461 None:intergenic 20.0%
!! TTAAAAAGGAAAACAAAATC+AGG - chr5_3:11182583-11182602 Msa0798440:intron 20.0%
!!! ATGAGGTTAATTTAAGTTAT+TGG - chr5_3:11182613-11182632 Msa0798440:intron 20.0%
!!! GTTTTCAATCTTATTTTTGT+TGG - chr5_3:11182725-11182744 Msa0798440:intron 20.0%
!!! TTTCAATCTTATTTTTGTTG+GGG - chr5_3:11182727-11182746 Msa0798440:intron 20.0%
!!! TCATTTTGCTGATTATTAAT+TGG - chr5_3:11183149-11183168 Msa0798440:intron 20.0%
!! AATTTAAATAACAGCTATAG+TGG + chr5_3:11183420-11183439 None:intergenic 20.0%
!! ATAATTGCATAGAAATAGAT+AGG + chr5_3:11184131-11184150 None:intergenic 20.0%
!! AAGGAAATATATATAACTAC+AGG + chr5_3:11184180-11184199 None:intergenic 20.0%
!!! TTCAAATTATTTGTCGTTTA+AGG + chr5_3:11184749-11184768 None:intergenic 20.0%
!!! AAATACTTTTGATTCTGTTT+AGG - chr5_3:11184982-11185001 Msa0798440:intron 20.0%
!!! AATACTTTTGATTCTGTTTA+GGG - chr5_3:11184983-11185002 Msa0798440:intron 20.0%
!! AACAAAAAGAGAAAGAAAAA+TGG + chr5_3:11185195-11185214 None:intergenic 20.0%
!! GTAATCGATTCAGAAAATTT+AGG + chr5_3:11182310-11182329 None:intergenic 25.0%
! AGAGATTCGAAAGATTAAAA+AGG - chr5_3:11182569-11182588 Msa0798440:intron 25.0%
! GATAGATTATTGGATAATCT+CGG - chr5_3:11183039-11183058 Msa0798440:intron 25.0%
! ATAGATTATTGGATAATCTC+GGG - chr5_3:11183040-11183059 Msa0798440:intron 25.0%
!! TTTGCTGATTATTAATTGGT+TGG - chr5_3:11183153-11183172 Msa0798440:intron 25.0%
! TCTCTTATACTGCATAATTA+TGG - chr5_3:11183627-11183646 Msa0798440:CDS 25.0%
! CTCTTATACTGCATAATTAT+GGG - chr5_3:11183628-11183647 Msa0798440:CDS 25.0%
! ATATTAGACATCACTATATG+TGG + chr5_3:11183707-11183726 None:intergenic 25.0%
! ATGTCTAATATGACTTTACA+TGG - chr5_3:11183716-11183735 Msa0798440:intron 25.0%
! CAAAGCTACTAAAAAATCTA+GGG - chr5_3:11183805-11183824 Msa0798440:CDS 25.0%
! TCTTTAGATAAATCTCTAAG+AGG - chr5_3:11183987-11184006 Msa0798440:intron 25.0%
!!! TTTATAGATTTTTTTGGCCA+AGG - chr5_3:11184402-11184421 Msa0798440:intron 25.0%
! ATAATCAACTTCAACTAACA+TGG + chr5_3:11184520-11184539 None:intergenic 25.0%
! GAATGATAACACTGATAAAA+GGG - chr5_3:11184601-11184620 Msa0798440:intron 25.0%
! AATGATAACACTGATAAAAG+GGG - chr5_3:11184602-11184621 Msa0798440:intron 25.0%
!! TTGTAAGCAATATTTTGTGA+TGG - chr5_3:11184769-11184788 Msa0798440:intron 25.0%
! AAGAAAAAACATCATCTTGT+TGG - chr5_3:11184910-11184929 Msa0798440:intron 25.0%
!!! AGTATTTTTGAGAGTTTTCA+GGG + chr5_3:11184969-11184988 None:intergenic 25.0%
!!! AAGTATTTTTGAGAGTTTTC+AGG + chr5_3:11184970-11184989 None:intergenic 25.0%
! TCCTATAATAGAAAAACAAC+TGG + chr5_3:11185320-11185339 None:intergenic 25.0%
!!! TTGTTTTTCTATTATAGGAC+AGG - chr5_3:11185321-11185340 Msa0798440:CDS 25.0%
! TATTATAGGACAGGATATAT+GGG - chr5_3:11185330-11185349 Msa0798440:CDS 25.0%
CAAAATCAGGTTTAGTTATG+AGG - chr5_3:11182596-11182615 Msa0798440:intron 30.0%
TTGCAATGAGTAAAGTAACT+AGG - chr5_3:11182669-11182688 Msa0798440:intron 30.0%
TGCAATGAGTAAAGTAACTA+GGG - chr5_3:11182670-11182689 Msa0798440:intron 30.0%
GATATTGATCAATCTTGATG+TGG - chr5_3:11182794-11182813 Msa0798440:intron 30.0%
! ATTTTGTACTGAATAGTGTG+TGG + chr5_3:11182892-11182911 None:intergenic 30.0%
TTATTAATTGGTTGGCACTA+CGG - chr5_3:11183161-11183180 Msa0798440:intron 30.0%
TGCAGTATAAGAGAGAATAA+AGG + chr5_3:11183621-11183640 None:intergenic 30.0%
TAATATGACTTTACATGGCA+GGG - chr5_3:11183721-11183740 Msa0798440:intron 30.0%
ATATTGAAGAGAAAGAACGT+CGG - chr5_3:11183747-11183766 Msa0798440:intron 30.0%
!!! GATTTTTTAGTAGCTTTGGA+TGG + chr5_3:11183803-11183822 None:intergenic 30.0%
!!! CCTAGATTTTTTAGTAGCTT+TGG + chr5_3:11183807-11183826 None:intergenic 30.0%
CCAAAGCTACTAAAAAATCT+AGG - chr5_3:11183804-11183823 Msa0798440:CDS 30.0%
! AGCATTTCAACAATGCTTTT+GGG + chr5_3:11183908-11183927 None:intergenic 30.0%
! AAGCATTTCAACAATGCTTT+TGG + chr5_3:11183909-11183928 None:intergenic 30.0%
TTTATTAACTGAGACTGATG+AGG - chr5_3:11184033-11184052 Msa0798440:intron 30.0%
TGAGGAGGAAGATAAATTAA+AGG - chr5_3:11184051-11184070 Msa0798440:intron 30.0%
GGAATAAAAATCCTCATTTC+TGG + chr5_3:11184374-11184393 None:intergenic 30.0%
GGAATGATAACACTGATAAA+AGG - chr5_3:11184600-11184619 Msa0798440:intron 30.0%
ATGATAACACTGATAAAAGG+GGG - chr5_3:11184603-11184622 Msa0798440:intron 30.0%
AAGAAGAAGCTATAGTAACA+TGG - chr5_3:11184648-11184667 Msa0798440:intron 30.0%
ATACATGATGGCACATAAAT+TGG - chr5_3:11184800-11184819 Msa0798440:intron 30.0%
!!! GCCAGTTGTTTTTCTATTAT+AGG - chr5_3:11185316-11185335 Msa0798440:CDS 30.0%
CTATTATAGGACAGGATATA+TGG - chr5_3:11185329-11185348 Msa0798440:CDS 30.0%
! AATCTAAGAGTGTGTATTGC+AGG - chr5_3:11182530-11182549 Msa0798440:intron 35.0%
! ATCTAAGAGTGTGTATTGCA+GGG - chr5_3:11182531-11182550 Msa0798440:intron 35.0%
ATATTGCAGTTATAGCGTAG+CGG - chr5_3:11182840-11182859 Msa0798440:intron 35.0%
TTGTCGATCACAAACAACAA+CGG + chr5_3:11182985-11183004 None:intergenic 35.0%
ATCGACAACATTAGTTACGT+TGG - chr5_3:11182997-11183016 Msa0798440:intron 35.0%
TATCGCAAAAAATAGTGCTC+TGG - chr5_3:11183278-11183297 Msa0798440:intron 35.0%
CAACACTGGAACATATGAAA+AGG - chr5_3:11183444-11183463 Msa0798440:CDS 35.0%
CTAATATGACTTTACATGGC+AGG - chr5_3:11183720-11183739 Msa0798440:intron 35.0%
! TTTTGCTGAGATTCAGTGTT+TGG + chr5_3:11183860-11183879 None:intergenic 35.0%
AGCTAAGGAGAAGTAATGAT+TGG - chr5_3:11183931-11183950 Msa0798440:CDS 35.0%
GTTAGATAAGAGAGAAAGAG+AGG + chr5_3:11183957-11183976 None:intergenic 35.0%
AATTAAAGGCTACCACTTCA+AGG - chr5_3:11184065-11184084 Msa0798440:intron 35.0%
TTCAAGGAAGAGAAAATCCA+AGG - chr5_3:11184081-11184100 Msa0798440:intron 35.0%
AAGAGAAAATCCAAGGATTC+AGG - chr5_3:11184088-11184107 Msa0798440:intron 35.0%
AGAGAAAATCCAAGGATTCA+GGG - chr5_3:11184089-11184108 Msa0798440:intron 35.0%
TTCAGAACTGCAAATCACAA+AGG + chr5_3:11184199-11184218 None:intergenic 35.0%
CCTTTCTTTCAAGAAATCCA+AGG + chr5_3:11184268-11184287 None:intergenic 35.0%
CCTTGGATTTCTTGAAAGAA+AGG - chr5_3:11184265-11184284 Msa0798440:intron 35.0%
!! TCTGAAAGTATTTCAGGGTT+TGG + chr5_3:11184576-11184595 None:intergenic 35.0%
!! CCTTCTCTGAAAGTATTTCA+GGG + chr5_3:11184581-11184600 None:intergenic 35.0%
CCTGAAATACTTTCAGAGAA+GGG - chr5_3:11184579-11184598 Msa0798440:intron 35.0%
TTTATGTGCCATCATGTATC+AGG + chr5_3:11184799-11184818 None:intergenic 35.0%
TGCTCATATCTGAAAACTAG+TGG - chr5_3:11184868-11184887 Msa0798440:intron 35.0%
! TAGTGGCTTGCATATGTTTA+AGG - chr5_3:11184885-11184904 Msa0798440:intron 35.0%
ACGACAAAGACGATTTCAAA+TGG - chr5_3:11185069-11185088 Msa0798440:intron 35.0%
!! TAGAGTGTTGAAAATTGCTG+AGG - chr5_3:11185220-11185239 Msa0798440:intron 35.0%
TTGAAAATTGCTGAGGCTAA+TGG - chr5_3:11185227-11185246 Msa0798440:intron 35.0%
AAAACAACAGGCATTTGCAA+AGG + chr5_3:11185387-11185406 None:intergenic 35.0%
!!! CTGTTGTTTTTCCCAAACAA+GGG - chr5_3:11185397-11185416 Msa0798440:five_prime_UTR 35.0%
ATCAGAATCGTTGTCTGACA+TGG + chr5_3:11182368-11182387 None:intergenic 40.0%
! AGTTATAGCGTAGCGGAATT+TGG - chr5_3:11182847-11182866 Msa0798440:intron 40.0%
! TGCACTTTAGCACTTTTGCA+TGG - chr5_3:11182934-11182953 Msa0798440:intron 40.0%
! ACTTTAGCACTTTTGCATGG+TGG - chr5_3:11182937-11182956 Msa0798440:intron 40.0%
GATAATCTCGGGTTTGAGTA+GGG - chr5_3:11183051-11183070 Msa0798440:intron 40.0%
AAATAACAGCTATAGTGGCG+CGG + chr5_3:11183415-11183434 None:intergenic 40.0%
TGAGAGATAGTGCTTATCTC+AGG - chr5_3:11183492-11183511 Msa0798440:CDS 40.0%
CATGAGTCCAAAATAAAGCC+AGG + chr5_3:11183676-11183695 None:intergenic 40.0%
CAAAAACCAAACACTGCTGT+GGG - chr5_3:11183875-11183894 Msa0798440:CDS 40.0%
TGTTGAAATGCTTGCAGCTA+AGG - chr5_3:11183916-11183935 Msa0798440:CDS 40.0%
ATTAACTGAGACTGATGAGG+AGG - chr5_3:11184036-11184055 Msa0798440:intron 40.0%
! GGATTTTCTCTTCCTTGAAG+TGG + chr5_3:11184080-11184099 None:intergenic 40.0%
!! GCTGGTTTGCTCACAATAAT+AGG + chr5_3:11184222-11184241 None:intergenic 40.0%
AAGGCAGTCTTTAAGCATTC+AGG + chr5_3:11184249-11184268 None:intergenic 40.0%
TGAATGCTTAAAGACTGCCT+TGG - chr5_3:11184248-11184267 Msa0798440:intron 40.0%
TTCAAAACAGCAGACGATCT+TGG + chr5_3:11184303-11184322 None:intergenic 40.0%
AAGTAGACGTAATGCTTGGT+TGG + chr5_3:11184331-11184350 None:intergenic 40.0%
TGGAAAGTAGACGTAATGCT+TGG + chr5_3:11184335-11184354 None:intergenic 40.0%
TTACGTCTACTTTCCAGTTC+CGG - chr5_3:11184339-11184358 Msa0798440:intron 40.0%
!!! AGATTTTTTTGGCCAAGGTG+AGG - chr5_3:11184407-11184426 Msa0798440:intron 40.0%
AGTATTTCAGGGTTTGGAGA+GGG + chr5_3:11184570-11184589 None:intergenic 40.0%
AAGTATTTCAGGGTTTGGAG+AGG + chr5_3:11184571-11184590 None:intergenic 40.0%
CCCTGAAATACTTTCAGAGA+AGG - chr5_3:11184578-11184597 Msa0798440:intron 40.0%
!! CCCTTCTCTGAAAGTATTTC+AGG + chr5_3:11184582-11184601 None:intergenic 40.0%
ATAACACTGATAAAAGGGGG+AGG - chr5_3:11184606-11184625 Msa0798440:intron 40.0%
TAACACTGATAAAAGGGGGA+GGG - chr5_3:11184607-11184626 Msa0798440:intron 40.0%
ATGGTCAACCTGATACATGA+TGG - chr5_3:11184788-11184807 Msa0798440:intron 40.0%
!! CCTATCGACTTGTTGCTAAA+TGG + chr5_3:11184843-11184862 None:intergenic 40.0%
CCATTTAGCAACAAGTCGAT+AGG - chr5_3:11184840-11184859 Msa0798440:intron 40.0%
TTCTGTTTAGGGACTTCTGA+TGG - chr5_3:11184994-11185013 Msa0798440:intron 40.0%
AGTAGTTTCACTCTCAGCTT+AGG - chr5_3:11185354-11185373 Msa0798440:exon 40.0%
GTAGTTTCACTCTCAGCTTA+GGG - chr5_3:11185355-11185374 Msa0798440:exon 40.0%
! CCTTGTTTGGGAAAAACAAC+AGG + chr5_3:11185399-11185418 None:intergenic 40.0%
!!! CCTGTTGTTTTTCCCAAACA+AGG - chr5_3:11185396-11185415 Msa0798440:five_prime_UTR 40.0%
!! AGTGTTTCTAGCCCTTGTTT+GGG + chr5_3:11185411-11185430 None:intergenic 40.0%
TTCAGCTGTGAATTCCTCAG+GGG + chr5_3:11182392-11182411 None:intergenic 45.0%
GTTCAGCTGTGAATTCCTCA+GGG + chr5_3:11182393-11182412 None:intergenic 45.0%
TGTTCAGCTGTGAATTCCTC+AGG + chr5_3:11182394-11182413 None:intergenic 45.0%
TGAGGAATTCACAGCTGAAC+AGG - chr5_3:11182393-11182412 Msa0798440:intron 45.0%
GGATAATCTCGGGTTTGAGT+AGG - chr5_3:11183050-11183069 Msa0798440:intron 45.0%
! ATTATGGGCTAACCGCTGAA+TGG - chr5_3:11183536-11183555 Msa0798440:intron 45.0%
AGATGGGTGTAGCTAGCATA+TGG - chr5_3:11183562-11183581 Msa0798440:intron 45.0%
!!! ACGCTCTCCTGGCTTTATTT+TGG - chr5_3:11183666-11183685 Msa0798440:CDS 45.0%
AGAAAGAACGTCGGCGAAAA+TGG - chr5_3:11183756-11183775 Msa0798440:intron 45.0%
GAAAGAACGTCGGCGAAAAT+GGG - chr5_3:11183757-11183776 Msa0798440:intron 45.0%
!! TTAGTAGCTTTGGATGGTCG+AGG + chr5_3:11183797-11183816 None:intergenic 45.0%
GCAAAAACCAAACACTGCTG+TGG - chr5_3:11183874-11183893 Msa0798440:CDS 45.0%
AGAAATCCCACAGCAGTGTT+TGG + chr5_3:11183884-11183903 None:intergenic 45.0%
! TCCAAGGATTCAGGGTTAGT+AGG - chr5_3:11184097-11184116 Msa0798440:intron 45.0%
! CCAAGGATTCAGGGTTAGTA+GGG - chr5_3:11184098-11184117 Msa0798440:intron 45.0%
TTTAAGCATTCAGGAGGAGC+TGG + chr5_3:11184240-11184259 None:intergenic 45.0%
GCAGTCTTTAAGCATTCAGG+AGG + chr5_3:11184246-11184265 None:intergenic 45.0%
TACGTCTACTTTCCAGTTCC+GGG - chr5_3:11184340-11184359 Msa0798440:intron 45.0%
!! TCATTTCTGGCGTATGATCC+CGG + chr5_3:11184361-11184380 None:intergenic 45.0%
ACAGAAGCAGCAAAGACGAT+TGG + chr5_3:11184460-11184479 None:intergenic 45.0%
! ATCGTCTTTGCTGCTTCTGT+CGG - chr5_3:11184460-11184479 Msa0798440:intron 45.0%
TTTGGAGAGGGAGTTCTATG+TGG + chr5_3:11184558-11184577 None:intergenic 45.0%
AACACTGATAAAAGGGGGAG+GGG - chr5_3:11184608-11184627 Msa0798440:intron 45.0%
TTGGAGCCACTTCTGTTCTT+GGG - chr5_3:11184929-11184948 Msa0798440:intron 45.0%
GAGGACTACTTCTTTGTCCA+GGG - chr5_3:11185028-11185047 Msa0798440:intron 45.0%
TTTGTCCAGGGTTTGTGATG+AGG - chr5_3:11185040-11185059 Msa0798440:intron 45.0%
CAAATCCTCATCACAAACCC+TGG + chr5_3:11185048-11185067 None:intergenic 45.0%
CAGGGTTTGTGATGAGGATT+TGG - chr5_3:11185046-11185065 Msa0798440:intron 45.0%
TTGCAGAGTTCTTGTCTTCC+TGG - chr5_3:11185117-11185136 Msa0798440:intron 45.0%
TCTTGTCTTCCTGGTGATCA+AGG - chr5_3:11185126-11185145 Msa0798440:CDS 45.0%
GAATCAGAGACCAAGAAGGT+TGG + chr5_3:11185152-11185171 None:intergenic 45.0%
AGCTGAATCAGAGACCAAGA+AGG + chr5_3:11185156-11185175 None:intergenic 45.0%
!! AAAAATCTATAAATTTATAA+GGG + chr5_3:11184395-11184414 None:intergenic 5.0%
!! AAAAAATCTATAAATTTATA+AGG + chr5_3:11184396-11184415 None:intergenic 5.0%
!!! TATAAATTTATAGATTTTTT+TGG - chr5_3:11184396-11184415 Msa0798440:intron 5.0%
CAATCTTGATGTGGCTGCTC+AGG - chr5_3:11182803-11182822 Msa0798440:intron 50.0%
GTTGGCACTACGGTGCTTAA+TGG - chr5_3:11183171-11183190 Msa0798440:intron 50.0%
TAACCGCTGAATGGCACAGA+TGG - chr5_3:11183545-11183564 Msa0798440:intron 50.0%
AACCGCTGAATGGCACAGAT+GGG - chr5_3:11183546-11183565 Msa0798440:intron 50.0%
CCCTACTAACCCTGAATCCT+TGG + chr5_3:11184101-11184120 None:intergenic 50.0%
GGGATCATACGCCAGAAATG+AGG - chr5_3:11184360-11184379 Msa0798440:intron 50.0%
GTTGGAGCCACTTCTGTTCT+TGG - chr5_3:11184928-11184947 Msa0798440:intron 50.0%
CTTCAGCCCAAGAACAGAAG+TGG + chr5_3:11184938-11184957 None:intergenic 50.0%
!! TGAGAGTTTTCAGGGCTGCT+CGG + chr5_3:11184961-11184980 None:intergenic 50.0%
! ACTTCTGATGGCGAATGCGT+CGG - chr5_3:11185006-11185025 Msa0798440:intron 50.0%
GGAGGACTACTTCTTTGTCC+AGG - chr5_3:11185027-11185046 Msa0798440:intron 50.0%
GTGATCAAGGCCAACCTTCT+TGG - chr5_3:11185139-11185158 Msa0798440:CDS 50.0%
CTTGGTCTCTGATTCAGCTC+TGG - chr5_3:11185157-11185176 Msa0798440:intron 50.0%
CAACGATTCTGATGCCCCTG+AGG - chr5_3:11182375-11182394 Msa0798440:intron 55.0%
! CACCCATCTGTGCCATTCAG+CGG + chr5_3:11183551-11183570 None:intergenic 55.0%
GATCCAATTGCACGCTCTCC+TGG - chr5_3:11183655-11183674 Msa0798440:CDS 55.0%
! AAGCCAGGAGAGCGTGCAAT+TGG + chr5_3:11183661-11183680 None:intergenic 55.0%
GCAACATTGACGCCTCACCT+TGG + chr5_3:11184422-11184441 None:intergenic 55.0%
! TGCTGCTTCTGTCGGTGTAC+TGG - chr5_3:11184468-11184487 Msa0798440:intron 55.0%
ACTGATAAAAGGGGGAGGGG+TGG - chr5_3:11184611-11184630 Msa0798440:intron 55.0%
!! GAAGGTTGGCCTTGATCACC+AGG + chr5_3:11185138-11185157 None:intergenic 55.0%
CTGGCGTATGATCCCGGAAC+TGG + chr5_3:11184355-11184374 None:intergenic 60.0%
! TCTGATGGCGAATGCGTCGG+AGG - chr5_3:11185009-11185028 Msa0798440:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 11182297 11185430 11182297 ID=Msa0798440;Name=Msa0798440
chr5_3 mRNA 11182297 11185430 11182297 ID=Msa0798440-mRNA-1;Parent=Msa0798440;Name=Msa0798440-mRNA-1;_AED=0.22;_eAED=0.22;_QI=70|1|1|1|0.8|0.66|6|131|184
chr5_3 exon 11182297 11182384 11182297 ID=Msa0798440-mRNA-1:exon:4640;Parent=Msa0798440-mRNA-1
chr5_3 exon 11183304 11183515 11183304 ID=Msa0798440-mRNA-1:exon:4639;Parent=Msa0798440-mRNA-1
chr5_3 exon 11183617 11183700 11183617 ID=Msa0798440-mRNA-1:exon:4638;Parent=Msa0798440-mRNA-1
chr5_3 exon 11183785 11183985 11183785 ID=Msa0798440-mRNA-1:exon:4637;Parent=Msa0798440-mRNA-1
chr5_3 exon 11185123 11185175 11185123 ID=Msa0798440-mRNA-1:exon:4636;Parent=Msa0798440-mRNA-1
chr5_3 exon 11185313 11185430 11185313 ID=Msa0798440-mRNA-1:exon:4635;Parent=Msa0798440-mRNA-1
chr5_3 five_prime_UTR 11185361 11185430 11185361 ID=Msa0798440-mRNA-1:five_prime_utr;Parent=Msa0798440-mRNA-1
chr5_3 CDS 11185313 11185360 11185313 ID=Msa0798440-mRNA-1:cds;Parent=Msa0798440-mRNA-1
chr5_3 CDS 11185123 11185175 11185123 ID=Msa0798440-mRNA-1:cds;Parent=Msa0798440-mRNA-1
chr5_3 CDS 11183785 11183985 11183785 ID=Msa0798440-mRNA-1:cds;Parent=Msa0798440-mRNA-1
chr5_3 CDS 11183617 11183700 11183617 ID=Msa0798440-mRNA-1:cds;Parent=Msa0798440-mRNA-1
chr5_3 CDS 11183347 11183515 11183347 ID=Msa0798440-mRNA-1:cds;Parent=Msa0798440-mRNA-1
chr5_3 three_prime_UTR 11183304 11183346 11183304 ID=Msa0798440-mRNA-1:three_prime_utr;Parent=Msa0798440-mRNA-1
chr5_3 three_prime_UTR 11182297 11182384 11182297 ID=Msa0798440-mRNA-1:three_prime_utr;Parent=Msa0798440-mRNA-1
Gene Sequence

>Msa0798440

ATGTCAGACAACGATTCTGATGCCCCTGAGGAATTCACAGCTGAACAGGGTATTCAGCTAGACGAAGAGATTCGAAAGATTAAAAAGGAAAACAAAATCAGGGTTAATATTGAAGAGAAAGAACGTCGGCGAAAATGGGCTCAAAATTTAACACCTCGACCATCCAAAGCTACTAAAAAATCTAGGGACACATCAAACACTGAATCTGAGCAAGAACCAAACACTGAATCTCAGCAAAAACCAAACACTGCTGTGGGATTTCTTCCCAAAAGCATTGTTGAAATGCTTGCAGCTAAGGAGAAAAAAAATTTATTAACTGAGACTGATGAGGAGGAAGATAAATTAAAGGCTACCACTTCAAGGAAGAGAAAATCCAAGGATTCAGGTTCTGAACCTATTATTGTGAGCAAACCAGCTCCTCCTGAATGCTTAAAGACTGCCTTGGATTTCTTGAAAGAAAGGAAAATGTCAGTTCCAAGATCGTCTGCTGTTTTGAAGAATTCCAACCAAGCATTACGTCTACTTTCCAGTTCCGGGATCATACGCCAGAAATGA

Protein sequence

>Msa0798440

MSDNDSDAPEEFTAEQGIQLDEEIRKIKKENKIRVNIEEKERRRKWAQNLTPRPSKATKKSRDTSNTESEQEPNTESQQKPNTAVGFLPKSIVEMLAAKEKKNLLTETDEEEDKLKATTSRKRKSKDSGSEPIIVSKPAPPECLKTALDFLKERKMSVPRSSAVLKNSNQALRLLSSSGIIRQK*