AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0397540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397540 MtrunA17_Chr3g0085271 95.614 342 13 1 1 340 1 342 0.0 663
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397540 AT5G48240.1 46.809 329 133 8 16 339 18 309 2.03e-79 245
Msa0397540 AT5G48240.3 41.935 372 135 8 16 339 18 356 1.08e-72 229
Msa0397540 AT5G48240.2 44.295 298 116 7 16 308 18 270 5.58e-61 197

Find 115 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATAGTAATAGACTATTTA+TGG 0.119328 3_2:-17267328 Msa0397540:three_prime_UTR
TGTCACACCTGCTAATTATT+TGG 0.128361 3_2:-17269945 Msa0397540:CDS
TTCATCATGTTCAGTAATTT+TGG 0.145247 3_2:+17267393 None:intergenic
CGCTGAAAAGAAGGCTTCTT+TGG 0.194609 3_2:+17268547 None:intergenic
CTTTATTATCCAATTGTATT+AGG 0.230112 3_2:-17267362 Msa0397540:three_prime_UTR
ATAAAAGTTCCTCATCAAAA+TGG 0.262718 3_2:+17267259 None:intergenic
TCAGTGAACAAATTCAAAAT+TGG 0.269250 3_2:+17267417 None:intergenic
AATATCTCGTTTGAGTTGTT+AGG 0.289962 3_2:+17272603 None:intergenic
TGTGGTGGCTTCATCACTTT+TGG 0.308341 3_2:+17270715 None:intergenic
GTTTGAGTTGTTAGGGGTTA+AGG 0.309508 3_2:+17272611 None:intergenic
CTTCATCGGAACTGCTATCT+TGG 0.315922 3_2:+17267598 None:intergenic
GTGAAGGTTGTAAAGCATTC+AGG 0.319257 3_2:-17270360 Msa0397540:CDS
GAGCTGGGAAAGAGGAAGTT+TGG 0.319454 3_2:-17270772 Msa0397540:CDS
TTGAATTATAAAACAATTCA+TGG 0.322795 3_2:-17270827 Msa0397540:exon
AGCAGTTCCGATGAAGATTA+AGG 0.322931 3_2:-17267591 Msa0397540:exon
CTTCTTTATAATGCTCTTGA+AGG 0.331528 3_2:+17270333 None:intergenic
GAGAGGATGAACAACCTTCT+TGG 0.339326 3_2:-17267794 Msa0397540:CDS
CTTTGCATCCCTGTTCTTTG+AGG 0.339480 3_2:+17269581 None:intergenic
TCACTGAATTTCGTAATTCC+TGG 0.348429 3_2:+17270379 None:intergenic
ATTATTTCGTCGTAGGGTAT+TGG 0.363471 3_2:-17267222 Msa0397540:three_prime_UTR
GGCTGGACCCCTCAAAGAAC+AGG 0.375162 3_2:-17269590 Msa0397540:CDS
TTCTGCTACCCCTTCATCTT+CGG 0.376152 3_2:+17270486 None:intergenic
TTTGCATCCCTGTTCTTTGA+GGG 0.379386 3_2:+17269582 None:intergenic
ATGGCTGATTGGCTGGCCTT+TGG 0.383693 3_2:-17267450 Msa0397540:three_prime_UTR
GCTGACAAGTTCGAGAATAA+AGG 0.387185 3_2:-17267748 Msa0397540:CDS
CTTGTTACAGCTAGCAGAAA+AGG 0.390626 3_2:-17269972 Msa0397540:intron
TCCCTTGTTTGTGCTTGCAT+TGG 0.391353 3_2:+17267815 None:intergenic
TTTGAGTTGTTAGGGGTTAA+GGG 0.401318 3_2:+17272612 None:intergenic
AATCATATTCCTAATACAAT+TGG 0.407003 3_2:+17267353 None:intergenic
ATATCTCGTTTGAGTTGTTA+GGG 0.411012 3_2:+17272604 None:intergenic
TGTAAAGTTTCTTCATTTGT+TGG 0.412234 3_2:+17270668 None:intergenic
ACGGCGGAAGTGACAGCGGC+TGG 0.419525 3_2:+17272571 None:intergenic
AGTAACGTAATGAGCAGAAA+TGG 0.420863 3_2:+17267497 None:intergenic
AAACTTGATGGCTGATTGGC+TGG 0.426019 3_2:-17267457 Msa0397540:three_prime_UTR
GGAGACAGAGCGCAAGATCA+AGG 0.426021 3_2:-17270154 Msa0397540:CDS
CTCATTACGTTACTAAAGAA+TGG 0.426920 3_2:-17267488 Msa0397540:three_prime_UTR
GAGACAACTGCCCCTGCTAC+TGG 0.429501 3_2:-17270604 Msa0397540:CDS
GGAGAAACTTGATGGCTGAT+TGG 0.433716 3_2:-17267461 Msa0397540:three_prime_UTR
CTTATAAGTGTAGCGACAAA+AGG 0.434006 3_2:-17269905 Msa0397540:CDS
CGTGTTTCTAGTGGGATAAT+CGG 0.434301 3_2:-17267541 Msa0397540:three_prime_UTR
AGAGGATGAACAACCTTCTT+GGG 0.435774 3_2:-17267793 Msa0397540:CDS
ACGTTACTAAAGAATGGAAT+TGG 0.440530 3_2:-17267482 Msa0397540:three_prime_UTR
GCGTTAGGGAAGCCAGCTAT+TGG 0.445925 3_2:-17268527 Msa0397540:CDS
TATAGAAAAGCTTGCGGAAG+AGG 0.447708 3_2:-17270175 Msa0397540:CDS
TTCATCGGAACTGCTATCTT+GGG 0.454720 3_2:+17267599 None:intergenic
TAAAAGTTCCTCATCAAAAT+GGG 0.455210 3_2:+17267260 None:intergenic
ATCACCTTTGCACCAATAGC+TGG 0.456798 3_2:+17268515 None:intergenic
ATGGAAGTGAGCTGGGAAAG+AGG 0.457388 3_2:-17270780 Msa0397540:CDS
CAAGTTCGAGAATAAAGGAT+TGG 0.462911 3_2:-17267743 Msa0397540:CDS
TTCAAAACCTTAATCTTCAT+CGG 0.464287 3_2:+17267584 None:intergenic
CCGAAAAGTAATCGAAAGCT+TGG 0.464465 3_2:-17267297 Msa0397540:three_prime_UTR
AGTTGTTAGGGGTTAAGGGA+AGG 0.474131 3_2:+17272616 None:intergenic
GTTGTTAGGGGTTAAGGGAA+GGG 0.474680 3_2:+17272617 None:intergenic
GAGTGTTTCTGATGAGTTGT+TGG 0.478230 3_2:-17270311 Msa0397540:intron
ATGGAATTGGAGAAACTTGA+TGG 0.484582 3_2:-17267469 Msa0397540:three_prime_UTR
CTTCCCTAACGCTGAAAAGA+AGG 0.488467 3_2:+17268538 None:intergenic
AAAGCTCAAGTTGCTCAGAA+AGG 0.489370 3_2:-17269612 Msa0397540:CDS
TTCTTGTGATCTGACAATAC+TGG 0.489621 3_2:+17270204 None:intergenic
TTTAGTATTATTTCGTCGTA+GGG 0.489691 3_2:-17267228 Msa0397540:three_prime_UTR
TGAACAAATTCAAAATTGGT+TGG 0.491540 3_2:+17267421 None:intergenic
AATTGGTTGGTTTATACCAA+AGG 0.494286 3_2:+17267434 None:intergenic
ATTTAGTATTATTTCGTCGT+AGG 0.496791 3_2:-17267229 Msa0397540:three_prime_UTR
AAGCTCAAGTTGCTCAGAAA+GGG 0.498953 3_2:-17269611 Msa0397540:CDS
CGTCTAGTACTCCCAGTAGC+AGG 0.499349 3_2:+17270592 None:intergenic
AGCATATAATTATCGCGTAA+TGG 0.502059 3_2:+17267768 None:intergenic
GAAGTGACAGCGGCTGGGAA+AGG 0.502170 3_2:+17272577 None:intergenic
AAGTTCGAGAATAAAGGATT+GGG 0.504352 3_2:-17267742 Msa0397540:CDS
CTCAAAGAACAGGGATGCAA+AGG 0.511691 3_2:-17269580 Msa0397540:CDS
GAAGATCTATCCGAAGATGA+AGG 0.518592 3_2:-17270496 Msa0397540:CDS
TTGCATCCCTGTTCTTTGAG+GGG 0.522520 3_2:+17269583 None:intergenic
TTGTTACAGCTAGCAGAAAA+GGG 0.523614 3_2:-17269971 Msa0397540:intron
GAGGAGGATGAAATTCAGCC+AGG 0.526822 3_2:-17270397 Msa0397540:CDS
AGACAACTGCCCCTGCTACT+GGG 0.534405 3_2:-17270603 Msa0397540:CDS
GGCCAATGCAAGCACAAACA+AGG 0.534686 3_2:-17267817 Msa0397540:CDS
GAAGAAAGGTTACCAGATGA+TGG 0.535508 3_2:+17272496 None:intergenic
TGCGCGTCCAAATAATTAGC+AGG 0.542869 3_2:+17269938 None:intergenic
GAGACAGAGCGCAAGATCAA+GGG 0.544740 3_2:-17270153 Msa0397540:CDS
GGTTGAGCATGGAAGTGAGC+TGG 0.552552 3_2:-17270788 Msa0397540:CDS
TCAAGTTGCTCAGAAAGGGC+TGG 0.553946 3_2:-17269607 Msa0397540:CDS
AAGATCTATCCGAAGATGAA+GGG 0.556404 3_2:-17270495 Msa0397540:CDS
ACTTTCTTCTGTCCGTGTGG+TGG 0.558848 3_2:+17270700 None:intergenic
CAGCATCAGCGTGTTTCTAG+TGG 0.559433 3_2:-17267550 Msa0397540:three_prime_UTR
GAAACACAAGTGGTTGAGCA+TGG 0.561474 3_2:-17270799 Msa0397540:CDS
GTCTAGTACTCCCAGTAGCA+GGG 0.564848 3_2:+17270593 None:intergenic
CTCTGAGGATGAAGATGATG+AGG 0.568128 3_2:-17270416 Msa0397540:CDS
TGGGAAAGAGGAAGTTTGGT+AGG 0.575576 3_2:-17270768 Msa0397540:CDS
TCGCGTAATGGAGCCCAAGA+AGG 0.580268 3_2:+17267780 None:intergenic
TCAAAGAACAGGGATGCAAA+GGG 0.580392 3_2:-17269579 Msa0397540:intron
CGGCGGAAGTGACAGCGGCT+GGG 0.582939 3_2:+17272572 None:intergenic
GTTGAGCATGGAAGTGAGCT+GGG 0.585137 3_2:-17270787 Msa0397540:CDS
GAAGCCAGCTATTGGTGCAA+AGG 0.585865 3_2:-17268519 Msa0397540:intron
GAAGATGAAGGGGTAGCAGA+AGG 0.603387 3_2:-17270484 Msa0397540:CDS
AGCATCAGCGTGTTTCTAGT+GGG 0.603770 3_2:-17267549 Msa0397540:three_prime_UTR
GCCAATGCAAGCACAAACAA+GGG 0.604219 3_2:-17267816 Msa0397540:CDS
TGCAAGCACAAACAAGGGAG+AGG 0.605005 3_2:-17267811 Msa0397540:CDS
CAGTCATCACAAACTCTCAA+CGG 0.615097 3_2:-17272539 Msa0397540:five_prime_UTR
TTAACTTTCTTCTGTCCGTG+TGG 0.619849 3_2:+17270697 None:intergenic
ATAAGTGTAGCGACAAAAGG+AGG 0.628567 3_2:-17269902 Msa0397540:intron
TCTTGTTATAGAAAAGCTTG+CGG 0.634957 3_2:-17270181 Msa0397540:CDS
GGAATTACGAAATTCAGTGA+AGG 0.637878 3_2:-17270376 Msa0397540:CDS
TATCTCGTTTGAGTTGTTAG+GGG 0.644096 3_2:+17272605 None:intergenic
AGATCTATCCGAAGATGAAG+GGG 0.651704 3_2:-17270494 Msa0397540:CDS
AGGAAGTTTGGTAGGAACCA+AGG 0.652606 3_2:-17270760 Msa0397540:CDS
ATGAACGGCGGAAGTGACAG+CGG 0.654528 3_2:+17272567 None:intergenic
GTGGCATCTATGAAGACTAG+AGG 0.654804 3_2:-17270568 Msa0397540:CDS
TAAGAAAGTTAATTTCTCTG+AGG 0.655143 3_2:-17270431 Msa0397540:CDS
TGAGGATGAAGATGATGAGG+AGG 0.663150 3_2:-17270413 Msa0397540:CDS
TACTGGGAGTACTAGACGTG+TGG 0.664181 3_2:-17270587 Msa0397540:CDS
CATGGCTGAAGAAACACAAG+TGG 0.666963 3_2:-17270809 Msa0397540:CDS
GCTGGACCCCTCAAAGAACA+GGG 0.672553 3_2:-17269589 Msa0397540:CDS
AAAGTGATGAAGCCACCACA+CGG 0.690683 3_2:-17270712 Msa0397540:CDS
TCTAGTACTCCCAGTAGCAG+GGG 0.695403 3_2:+17270594 None:intergenic
GTGATGACTGTAGAGATGAA+CGG 0.698196 3_2:+17272552 None:intergenic
AGGTTGTAAAGCATTCAGGA+TGG 0.710807 3_2:-17270356 Msa0397540:CDS
ATGACTGTAGAGATGAACGG+CGG 0.823942 3_2:+17272555 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATGAAATTAAGAAA+GGG + chr3_2:17267294-17267313 None:intergenic 10.0%
!! TTATTAGAGAAATAAAAAAT+TGG - chr3_2:17269507-17269526 Msa0397540:intron 10.0%
!!! AAGTTTTCTATTTTAAAAAT+AGG + chr3_2:17270577-17270596 None:intergenic 10.0%
!! ATTAATTATCTAAAAAACAA+TGG + chr3_2:17270813-17270832 None:intergenic 10.0%
!! AATATATGAAATTAAGAAAG+GGG + chr3_2:17267293-17267312 None:intergenic 15.0%
!! GAAATATATGAAATTAAGAA+AGG + chr3_2:17267295-17267314 None:intergenic 15.0%
!!! TCATCTTTTTTTTTTTATTC+TGG - chr3_2:17267334-17267353 Msa0397540:three_prime_UTR 15.0%
!!! TTCTGGTTTTTTTTTTTTTT+TGG - chr3_2:17267351-17267370 Msa0397540:three_prime_UTR 15.0%
!!! TTTTTTTTATTTGGAAAACT+TGG + chr3_2:17268099-17268118 None:intergenic 15.0%
!! TTGAATTATAAAACAATTCA+TGG - chr3_2:17268936-17268955 Msa0397540:intron 15.0%
!!! TTTCTTTTTCTTTTAAATAG+AGG - chr3_2:17269892-17269911 Msa0397540:intron 15.0%
!! GATTATCATTATTAAATTGA+AGG - chr3_2:17270101-17270120 Msa0397540:intron 15.0%
!! TTCTTTAATAATAAAACTTG+AGG - chr3_2:17270530-17270549 Msa0397540:CDS 15.0%
!!! CTTTAAAAAAAATGAATTGA+AGG + chr3_2:17270729-17270748 None:intergenic 15.0%
!!! TCAATTCATTTTTTTTAAAG+AGG - chr3_2:17270729-17270748 Msa0397540:CDS 15.0%
!! CAACAATTAAATACTTAAAT+AGG + chr3_2:17271006-17271025 None:intergenic 15.0%
!! TTTAATTGTTGAAAAATAAG+AGG - chr3_2:17271015-17271034 Msa0397540:intron 15.0%
!! TTAATTGTTGAAAAATAAGA+GGG - chr3_2:17271016-17271035 Msa0397540:intron 15.0%
!! AATAAATAGAGTAAATGATT+TGG + chr3_2:17271411-17271430 None:intergenic 15.0%
!!! TAACTTTAAAATAAACTTAC+TGG + chr3_2:17272058-17272077 None:intergenic 15.0%
!! ATATATGAAATTAAGAAAGG+GGG + chr3_2:17267292-17267311 None:intergenic 20.0%
!!! TTCATATATTTCACCAATTT+TGG - chr3_2:17267303-17267322 Msa0397540:three_prime_UTR 20.0%
!! GTGTTTAATGTATATTTGAT+TGG - chr3_2:17267373-17267392 Msa0397540:three_prime_UTR 20.0%
!!! ATTTTGATTTTATTGGAATG+TGG - chr3_2:17267456-17267475 Msa0397540:three_prime_UTR 20.0%
!! AAAAATCAATTAAGCTACAA+AGG + chr3_2:17267751-17267770 None:intergenic 20.0%
!! AAATATTGAAAACCTTAATG+TGG - chr3_2:17268132-17268151 Msa0397540:intron 20.0%
!!! ATTGTTATTACCATCTTTTA+GGG - chr3_2:17268195-17268214 Msa0397540:intron 20.0%
!! ATTGTTTAAGGAATTAAAAG+AGG - chr3_2:17268386-17268405 Msa0397540:intron 20.0%
!!! ATTTGAGAATTTTGTTAAGA+AGG - chr3_2:17268497-17268516 Msa0397540:intron 20.0%
!!! TTTGAGAATTTTGTTAAGAA+GGG - chr3_2:17268498-17268517 Msa0397540:intron 20.0%
!! GTTAAATTAGTAAGTAAGAT+AGG - chr3_2:17268626-17268645 Msa0397540:intron 20.0%
!! TGAAAATTGAATTCGTATTT+CGG + chr3_2:17268751-17268770 None:intergenic 20.0%
!!! CATAAATTTTAGTGCTAATT+GGG + chr3_2:17269701-17269720 None:intergenic 20.0%
!!! ACATAAATTTTAGTGCTAAT+TGG + chr3_2:17269702-17269721 None:intergenic 20.0%
!! TAGACCAAAATATTATCTAT+CGG - chr3_2:17269738-17269757 Msa0397540:intron 20.0%
!! AAACAAAATTTGCAAATGTT+AGG + chr3_2:17270045-17270064 None:intergenic 20.0%
!!! TTTCAGTTTATCTTTTATAC+AGG - chr3_2:17270326-17270345 Msa0397540:CDS 20.0%
!!! TTCAGTTTATCTTTTATACA+GGG - chr3_2:17270327-17270346 Msa0397540:CDS 20.0%
!! GTTTATTGAGGTTTATAAAA+AGG + chr3_2:17270774-17270793 None:intergenic 20.0%
!! TAATTGTTGAAAAATAAGAG+GGG - chr3_2:17271017-17271036 Msa0397540:intron 20.0%
!!! CAAACATTTTGAGTATATTA+GGG + chr3_2:17271145-17271164 None:intergenic 20.0%
!! CAAATTAGATAGTATGAATT+GGG + chr3_2:17271168-17271187 None:intergenic 20.0%
!! ACAAATTAGATAGTATGAAT+TGG + chr3_2:17271169-17271188 None:intergenic 20.0%
!!! TCTGTTGATAATAACTAATT+AGG - chr3_2:17271317-17271336 Msa0397540:intron 20.0%
!!! CATTCAACTTATATACATTT+TGG + chr3_2:17271381-17271400 None:intergenic 20.0%
!!! TCTTTCATTTTTCGAATAAA+GGG + chr3_2:17271468-17271487 None:intergenic 20.0%
!!! TTCTTTCATTTTTCGAATAA+AGG + chr3_2:17271469-17271488 None:intergenic 20.0%
!! TGCATATAAATTCAGAAAAT+CGG + chr3_2:17271540-17271559 None:intergenic 20.0%
!!! ACTATAGAACAATTTTAAAG+TGG + chr3_2:17271697-17271716 None:intergenic 20.0%
!! CTTTATTATCCAATTGTATT+AGG - chr3_2:17272401-17272420 Msa0397540:intron 20.0%
!! AATCATATTCCTAATACAAT+TGG + chr3_2:17272413-17272432 None:intergenic 20.0%
!! CTATAGTAATAGACTATTTA+TGG - chr3_2:17272435-17272454 Msa0397540:intron 20.0%
! TTTCATACTTATAAGCTCAT+AGG - chr3_2:17267801-17267820 Msa0397540:CDS 25.0%
!! TGGTCTTAAAAAAATGTCTA+CGG + chr3_2:17268173-17268192 None:intergenic 25.0%
! AAAGATGGTAATAACAATCA+TGG + chr3_2:17268193-17268212 None:intergenic 25.0%
!!! GATTGTTATTACCATCTTTT+AGG - chr3_2:17268194-17268213 Msa0397540:intron 25.0%
! ATTCCTTAAACAATGTTCTT+AGG + chr3_2:17268380-17268399 None:intergenic 25.0%
! ATCTCTATGATGATAAGTTT+AGG + chr3_2:17268570-17268589 None:intergenic 25.0%
! CTTTCAACAACGTAAATTAT+TGG + chr3_2:17268720-17268739 None:intergenic 25.0%
!! GTTTCTTACTTGACTTTTTA+CGG + chr3_2:17269029-17269048 None:intergenic 25.0%
! TGTAAAGTTTCTTCATTTGT+TGG + chr3_2:17269098-17269117 None:intergenic 25.0%
! TAAGAAAGTTAATTTCTCTG+AGG - chr3_2:17269332-17269351 Msa0397540:intron 25.0%
! TAAACTTGAACAACTCTATA+GGG - chr3_2:17269535-17269554 Msa0397540:intron 25.0%
!!! ATATTTTGGTCTACGATAAT+TGG + chr3_2:17269731-17269750 None:intergenic 25.0%
! AGACCAAAATATTATCTATC+GGG - chr3_2:17269739-17269758 Msa0397540:intron 25.0%
!! TTACCCGATAGATAATATTT+TGG + chr3_2:17269745-17269764 None:intergenic 25.0%
! AAAGAAAAAGGAATCTCATT+TGG - chr3_2:17270293-17270312 Msa0397540:intron 25.0%
! AAGAAAAAGGAATCTCATTT+GGG - chr3_2:17270294-17270313 Msa0397540:intron 25.0%
!! GAAATTTAACACAACTGTTT+TGG - chr3_2:17270349-17270368 Msa0397540:CDS 25.0%
! GAATGAATAAAAATGAGCTT+TGG + chr3_2:17270375-17270394 None:intergenic 25.0%
! AAATAGAAAACTTAAGAGTC+AGG - chr3_2:17270584-17270603 Msa0397540:CDS 25.0%
! TACGTATTAAGGTGATTATA+GGG + chr3_2:17270621-17270640 None:intergenic 25.0%
! TTACGTATTAAGGTGATTAT+AGG + chr3_2:17270622-17270641 None:intergenic 25.0%
! CTGCATAATAAAGTTTATTG+AGG + chr3_2:17270786-17270805 None:intergenic 25.0%
! AAAATCAGTGTTATCAATAG+AGG + chr3_2:17270905-17270924 None:intergenic 25.0%
!!! ATATGATGTTCTAAGAATGA+GGG - chr3_2:17270962-17270981 Msa0397540:intron 25.0%
!!! GCAAACATTTTGAGTATATT+AGG + chr3_2:17271146-17271165 None:intergenic 25.0%
!! GTCATAAACTAATAGTTCTA+AGG + chr3_2:17271611-17271630 None:intergenic 25.0%
! ACCTCTAAATTAATGTGATA+TGG - chr3_2:17271629-17271648 Msa0397540:intron 25.0%
! TCCATATCACATTAATTTAG+AGG + chr3_2:17271633-17271652 None:intergenic 25.0%
!! ACTTTGAACATGATGTTTTT+AGG - chr3_2:17271748-17271767 Msa0397540:intron 25.0%
!! TCCAAGCAATTTGATAATTA+GGG + chr3_2:17271914-17271933 None:intergenic 25.0%
!! ATCCAAGCAATTTGATAATT+AGG + chr3_2:17271915-17271934 None:intergenic 25.0%
! ATTATCAAATTGCTTGGATT+TGG - chr3_2:17271916-17271935 Msa0397540:intron 25.0%
! TTCAAAACCTTAATCTTCAT+CGG + chr3_2:17272182-17272201 None:intergenic 25.0%
!!! TAAGGTTTTGAAACTTGAAA+AGG - chr3_2:17272190-17272209 Msa0397540:intron 25.0%
! TGAACAAATTCAAAATTGGT+TGG + chr3_2:17272345-17272364 None:intergenic 25.0%
! TCAGTGAACAAATTCAAAAT+TGG + chr3_2:17272349-17272368 None:intergenic 25.0%
!! TTCATCATGTTCAGTAATTT+TGG + chr3_2:17272373-17272392 None:intergenic 25.0%
!!! TTTAATTTCCCATTTTGATG+AGG - chr3_2:17272495-17272514 Msa0397540:intron 25.0%
! TAAAAGTTCCTCATCAAAAT+GGG + chr3_2:17272506-17272525 None:intergenic 25.0%
! ATAAAAGTTCCTCATCAAAA+TGG + chr3_2:17272507-17272526 None:intergenic 25.0%
! ATTTAGTATTATTTCGTCGT+AGG - chr3_2:17272534-17272553 Msa0397540:five_prime_UTR 25.0%
! TTTAGTATTATTTCGTCGTA+GGG - chr3_2:17272535-17272554 Msa0397540:five_prime_UTR 25.0%
!! TTTTGAACAGAAGAATGTTA+CGG - chr3_2:17272589-17272608 Msa0397540:five_prime_UTR 25.0%
!! ATATCTCGTTTGAGTTGTTA+GGG + chr3_2:17267162-17267181 None:intergenic 30.0%
!! AATATCTCGTTTGAGTTGTT+AGG + chr3_2:17267163-17267182 None:intergenic 30.0%
AAGCTATAAGCTCAAATTTG+TGG + chr3_2:17267574-17267593 None:intergenic 30.0%
CTCATTTGACTAAAATAGAC+CGG - chr3_2:17267606-17267625 Msa0397540:CDS 30.0%
!! GTTTTAAATCGCTGTTGTAA+AGG - chr3_2:17267847-17267866 Msa0397540:intron 30.0%
AAGGAATTGTTAACATCATG+AGG + chr3_2:17267975-17267994 None:intergenic 30.0%
GATGTTAACAATTCCTTTGT+CGG - chr3_2:17267978-17267997 Msa0397540:intron 30.0%
ATGTTAACAATTCCTTTGTC+GGG - chr3_2:17267979-17267998 Msa0397540:intron 30.0%
TATTTGGAAAACTTGGTATC+CGG + chr3_2:17268092-17268111 None:intergenic 30.0%
!!! GCTGCAGCTTTTTTTTTATT+TGG + chr3_2:17268108-17268127 None:intergenic 30.0%
ATAAAAAAAAAGCTGCAGCT+AGG - chr3_2:17268109-17268128 Msa0397540:intron 30.0%
TATTGAAAACCTTAATGTGG+TGG - chr3_2:17268135-17268154 Msa0397540:intron 30.0%
ACAAGAGAATCAAATTGAAC+AGG + chr3_2:17268318-17268337 None:intergenic 30.0%
AACAATGTTCTTAGGAGTTA+GGG + chr3_2:17268372-17268391 None:intergenic 30.0%
AAACAATGTTCTTAGGAGTT+AGG + chr3_2:17268373-17268392 None:intergenic 30.0%
ACTCCTAAGAACATTGTTTA+AGG - chr3_2:17268374-17268393 Msa0397540:intron 30.0%
TTTGTTAAGAAGGGAGAAAA+TGG - chr3_2:17268507-17268526 Msa0397540:intron 30.0%
TTGTTAAGAAGGGAGAAAAT+GGG - chr3_2:17268508-17268527 Msa0397540:intron 30.0%
GTAAGATAGGTAAAGTTTGT+AGG - chr3_2:17268639-17268658 Msa0397540:intron 30.0%
AGCAGAAAAATATAGACTCA+GGG + chr3_2:17268796-17268815 None:intergenic 30.0%
TAGCAGAAAAATATAGACTC+AGG + chr3_2:17268797-17268816 None:intergenic 30.0%
TATATGTCACATATGAAGAC+AGG + chr3_2:17268914-17268933 None:intergenic 30.0%
TGTCTTCATATGTGACATAT+AGG - chr3_2:17268913-17268932 Msa0397540:intron 30.0%
CTTCTTTATAATGCTCTTGA+AGG + chr3_2:17269433-17269452 None:intergenic 30.0%
CTAAACTTGAACAACTCTAT+AGG - chr3_2:17269534-17269553 Msa0397540:intron 30.0%
! TCTTGTTATAGAAAAGCTTG+CGG - chr3_2:17269582-17269601 Msa0397540:CDS 30.0%
GCAACAGTTAAATAAGTAAG+AGG + chr3_2:17269959-17269978 None:intergenic 30.0%
! TCCTTTTTCTTTACTTGAGA+CGG + chr3_2:17270285-17270304 None:intergenic 30.0%
AGAAAAAGGAATCTCATTTG+GGG - chr3_2:17270295-17270314 Msa0397540:intron 30.0%
TGAGAGAAGTTTACGTATTA+AGG + chr3_2:17270632-17270651 None:intergenic 30.0%
GAAAAAAATGTAGCAAAGCA+TGG + chr3_2:17270664-17270683 None:intergenic 30.0%
!! GATATGATGTTCTAAGAATG+AGG - chr3_2:17270961-17270980 Msa0397540:intron 30.0%
!! TATGATGTTCTAAGAATGAG+GGG - chr3_2:17270963-17270982 Msa0397540:intron 30.0%
!!! ACCTATCTGTTCTATTTTTG+TGG - chr3_2:17271117-17271136 Msa0397540:intron 30.0%
ACCACAAAAATAGAACAGAT+AGG + chr3_2:17271121-17271140 None:intergenic 30.0%
CTTAATTCTGTTGAAGAACA+AGG - chr3_2:17271351-17271370 Msa0397540:intron 30.0%
TAGACTTGAGCATTTACTTA+CGG - chr3_2:17271431-17271450 Msa0397540:intron 30.0%
TCCCTAATTATCAAATTGCT+TGG - chr3_2:17271910-17271929 Msa0397540:intron 30.0%
AGCATATAATTATCGCGTAA+TGG + chr3_2:17271998-17272017 None:intergenic 30.0%
AAGTTCGAGAATAAAGGATT+GGG - chr3_2:17272021-17272040 Msa0397540:intron 30.0%
CTCATTACGTTACTAAAGAA+TGG - chr3_2:17272275-17272294 Msa0397540:intron 30.0%
ACGTTACTAAAGAATGGAAT+TGG - chr3_2:17272281-17272300 Msa0397540:intron 30.0%
!! AATTGGTTGGTTTATACCAA+AGG + chr3_2:17272332-17272351 None:intergenic 30.0%
!! TTTGAGTTGTTAGGGGTTAA+GGG + chr3_2:17267154-17267173 None:intergenic 35.0%
!! TATCTCGTTTGAGTTGTTAG+GGG + chr3_2:17267161-17267180 None:intergenic 35.0%
!! CCAGATGATGGAAAAAGAAA+CGG + chr3_2:17267258-17267277 None:intergenic 35.0%
AATTAAGAAAGGGGGAAGAA+AGG + chr3_2:17267284-17267303 None:intergenic 35.0%
GATGAGAACAGTACCAAAAT+TGG + chr3_2:17267319-17267338 None:intergenic 35.0%
TTGACTAAAATAGACCGGTT+CGG - chr3_2:17267611-17267630 Msa0397540:CDS 35.0%
! ATAAGCTCATGAGAAAGTGT+TGG + chr3_2:17267646-17267665 None:intergenic 35.0%
TTAAATCGCTGTTGTAAAGG+CGG - chr3_2:17267850-17267869 Msa0397540:intron 35.0%
TCCTTGATATTGTAACCTTC+AGG - chr3_2:17267884-17267903 Msa0397540:intron 35.0%
CCTTGATATTGTAACCTTCA+GGG - chr3_2:17267885-17267904 Msa0397540:intron 35.0%
CTTGATATTGTAACCTTCAG+GGG - chr3_2:17267886-17267905 Msa0397540:intron 35.0%
!! CTCTGGATTAGTTAGTTCTT+AGG - chr3_2:17268066-17268085 Msa0397540:intron 35.0%
!! GAAAATGGGATTTTAGCAGT+TGG - chr3_2:17268522-17268541 Msa0397540:CDS 35.0%
!! GGATTTTAGCAGTTGGAATT+TGG - chr3_2:17268529-17268548 Msa0397540:CDS 35.0%
ATAGGTAAAGTTTGTAGGTG+AGG - chr3_2:17268644-17268663 Msa0397540:intron 35.0%
TTTCACCAAAAATAAGCACG+TGG - chr3_2:17269227-17269246 Msa0397540:intron 35.0%
AAGATCTATCCGAAGATGAA+GGG - chr3_2:17269268-17269287 Msa0397540:intron 35.0%
TCACTGAATTTCGTAATTCC+TGG + chr3_2:17269387-17269406 None:intergenic 35.0%
GGAATTACGAAATTCAGTGA+AGG - chr3_2:17269387-17269406 Msa0397540:intron 35.0%
TTCTTGTGATCTGACAATAC+TGG + chr3_2:17269562-17269581 None:intergenic 35.0%
GACAAAAAAGGAAAAGCTGA+TGG - chr3_2:17269636-17269655 Msa0397540:intron 35.0%
TTGTTACAGCTAGCAGAAAA+GGG - chr3_2:17269792-17269811 Msa0397540:intron 35.0%
TGTCACACCTGCTAATTATT+TGG - chr3_2:17269818-17269837 Msa0397540:intron 35.0%
CTTATAAGTGTAGCGACAAA+AGG - chr3_2:17269858-17269877 Msa0397540:intron 35.0%
CTACTTCTGATTTCTTTCAG+TGG - chr3_2:17269991-17270010 Msa0397540:intron 35.0%
ACAAAGAGAGGAGGAAAATT+TGG + chr3_2:17270071-17270090 None:intergenic 35.0%
!! GTTTTATACACACTTGTTGC+AGG - chr3_2:17270123-17270142 Msa0397540:intron 35.0%
ACCGTCTCAAGTAAAGAAAA+AGG - chr3_2:17270281-17270300 Msa0397540:intron 35.0%
CTGTCAGTGTTATCAAATAG+TGG - chr3_2:17270394-17270413 Msa0397540:CDS 35.0%
TATAGATGCTACAACCACTA+TGG + chr3_2:17270494-17270513 None:intergenic 35.0%
ATAGTGGTTGTAGCATCTAT+AGG - chr3_2:17270493-17270512 Msa0397540:CDS 35.0%
TAGTGGTTGTAGCATCTATA+GGG - chr3_2:17270494-17270513 Msa0397540:CDS 35.0%
!! TAGAGGATAGTGGAAAATAG+TGG + chr3_2:17270888-17270907 None:intergenic 35.0%
GTGTTATCAATAGAGGATAG+TGG + chr3_2:17270898-17270917 None:intergenic 35.0%
TCACAAACAAATCTTCAGCA+TGG + chr3_2:17270943-17270962 None:intergenic 35.0%
TGTTGAAAAATAAGAGGGGT+CGG - chr3_2:17271021-17271040 Msa0397540:intron 35.0%
! TCGTTCAGTCAGTTTTTCAT+TGG - chr3_2:17271286-17271305 Msa0397540:intron 35.0%
GTTCTTCAACAGAATTAAGC+AGG + chr3_2:17271350-17271369 None:intergenic 35.0%
TGTTCAAAGTTCATCCAGTT+TGG + chr3_2:17271738-17271757 None:intergenic 35.0%
! TTTGATAATTAGGGACACGA+TGG + chr3_2:17271905-17271924 None:intergenic 35.0%
CAAGTTCGAGAATAAAGGAT+TGG - chr3_2:17272020-17272039 Msa0397540:intron 35.0%
AGTAACGTAATGAGCAGAAA+TGG + chr3_2:17272269-17272288 None:intergenic 35.0%
ATGGAATTGGAGAAACTTGA+TGG - chr3_2:17272294-17272313 Msa0397540:intron 35.0%
!! CCAAGCTTTCGATTACTTTT+CGG + chr3_2:17272469-17272488 None:intergenic 35.0%
ATTATTTCGTCGTAGGGTAT+TGG - chr3_2:17272541-17272560 Msa0397540:five_prime_UTR 35.0%
!! GTTTGAGTTGTTAGGGGTTA+AGG + chr3_2:17267155-17267174 None:intergenic 40.0%
GTGATGACTGTAGAGATGAA+CGG + chr3_2:17267214-17267233 None:intergenic 40.0%
CAGTCATCACAAACTCTCAA+CGG - chr3_2:17267224-17267243 Msa0397540:three_prime_UTR 40.0%
! CCGTTTCTTTTTCCATCATC+TGG - chr3_2:17267255-17267274 Msa0397540:three_prime_UTR 40.0%
GAAGAAAGGTTACCAGATGA+TGG + chr3_2:17267270-17267289 None:intergenic 40.0%
! TGACTAAAATAGACCGGTTC+GGG - chr3_2:17267612-17267631 Msa0397540:CDS 40.0%
CTGTGTGTTTGTCATCATTG+AGG - chr3_2:17267825-17267844 Msa0397540:intron 40.0%
CCCTGAAGGTTACAATATCA+AGG + chr3_2:17267888-17267907 None:intergenic 40.0%
ATATTGTAACCTTCAGGGGT+TGG - chr3_2:17267890-17267909 Msa0397540:intron 40.0%
! TGTGTTCCTCTCAAGGTTTT+GGG - chr3_2:17267942-17267961 Msa0397540:intron 40.0%
AAGCAAATCCCTATATGGAC+TGG + chr3_2:17268005-17268024 None:intergenic 40.0%
! GTCCATATAGGGATTTGCTT+TGG - chr3_2:17268005-17268024 Msa0397540:intron 40.0%
AGCCAAAGCAAATCCCTATA+TGG + chr3_2:17268010-17268029 None:intergenic 40.0%
AATCTAACCGTCCACTAACA+AGG + chr3_2:17268042-17268061 None:intergenic 40.0%
!! GGATTAGTTAGTTCTTAGGC+CGG - chr3_2:17268070-17268089 Msa0397540:intron 40.0%
! AATGTCTACGGCAACAGTTT+TGG + chr3_2:17268161-17268180 None:intergenic 40.0%
! GTCAAAGCATCCCTAAAAGA+TGG + chr3_2:17268208-17268227 None:intergenic 40.0%
! GGGATGCTTTGACTTATGAT+TGG - chr3_2:17268215-17268234 Msa0397540:intron 40.0%
ATTCCATCATGTGACTCCTT+GGG - chr3_2:17268286-17268305 Msa0397540:intron 40.0%
! TACTTGACTTTTTACGGCCT+TGG + chr3_2:17269023-17269042 None:intergenic 40.0%
TTAACTTTCTTCTGTCCGTG+TGG + chr3_2:17269069-17269088 None:intergenic 40.0%
!! TTCCTCCACGTGCTTATTTT+TGG + chr3_2:17269235-17269254 None:intergenic 40.0%
GAAGATCTATCCGAAGATGA+AGG - chr3_2:17269267-17269286 Msa0397540:intron 40.0%
AGATCTATCCGAAGATGAAG+GGG - chr3_2:17269269-17269288 Msa0397540:intron 40.0%
! GTGAAGGTTGTAAAGCATTC+AGG - chr3_2:17269403-17269422 Msa0397540:intron 40.0%
! AGGTTGTAAAGCATTCAGGA+TGG - chr3_2:17269407-17269426 Msa0397540:intron 40.0%
! GAGTGTTTCTGATGAGTTGT+TGG - chr3_2:17269452-17269471 Msa0397540:intron 40.0%
TATAGAAAAGCTTGCGGAAG+AGG - chr3_2:17269588-17269607 Msa0397540:CDS 40.0%
GATCAAGGGAGAGACAAAAA+AGG - chr3_2:17269624-17269643 Msa0397540:intron 40.0%
CTTGTTACAGCTAGCAGAAA+AGG - chr3_2:17269791-17269810 Msa0397540:intron 40.0%
ATAAGTGTAGCGACAAAAGG+AGG - chr3_2:17269861-17269880 Msa0397540:intron 40.0%
TTTAACTGTTGCTGCGAACA+TGG - chr3_2:17269967-17269986 Msa0397540:intron 40.0%
TCATACAAAGCGACAAAGAG+AGG + chr3_2:17270083-17270102 None:intergenic 40.0%
! AAAGCTCAAGTTGCTCAGAA+AGG - chr3_2:17270151-17270170 Msa0397540:CDS 40.0%
! AAGCTCAAGTTGCTCAGAAA+GGG - chr3_2:17270152-17270171 Msa0397540:CDS 40.0%
TTTGCATCCCTGTTCTTTGA+GGG + chr3_2:17270184-17270203 None:intergenic 40.0%
TCAAAGAACAGGGATGCAAA+GGG - chr3_2:17270184-17270203 Msa0397540:CDS 40.0%
!! TTTTAAAGAGGCAGCATGTG+AGG - chr3_2:17270741-17270760 Msa0397540:CDS 40.0%
AAATAGAAGACGTCGCATAG+TGG + chr3_2:17270845-17270864 None:intergenic 40.0%
GTGGAATAGCATAGCATTGT+AGG + chr3_2:17270869-17270888 None:intergenic 40.0%
GTTGAAAAATAAGAGGGGTC+GGG - chr3_2:17271022-17271041 Msa0397540:intron 40.0%
TGAAACCTAGAACTCTGACA+GGG + chr3_2:17271080-17271099 None:intergenic 40.0%
ATGAAACCTAGAACTCTGAC+AGG + chr3_2:17271081-17271100 None:intergenic 40.0%
! AAGCCTTCTTTTCAGCGTTA+GGG - chr3_2:17271222-17271241 Msa0397540:intron 40.0%
AACAGAATTAAGCAGGACTC+GGG + chr3_2:17271343-17271362 None:intergenic 40.0%
CAACAGAATTAAGCAGGACT+CGG + chr3_2:17271344-17271363 None:intergenic 40.0%
AGCATTTACTTACGGACACT+TGG - chr3_2:17271439-17271458 Msa0397540:intron 40.0%
GCATTTACTTACGGACACTT+GGG - chr3_2:17271440-17271459 Msa0397540:intron 40.0%
GCTTAGACAAATTGCCAAAC+TGG - chr3_2:17271721-17271740 Msa0397540:intron 40.0%
TTGCTTGGATTTGGATATGC+AGG - chr3_2:17271925-17271944 Msa0397540:intron 40.0%
AGAGGATGAACAACCTTCTT+GGG - chr3_2:17271970-17271989 Msa0397540:intron 40.0%
GCTGACAAGTTCGAGAATAA+AGG - chr3_2:17272015-17272034 Msa0397540:intron 40.0%
TGAGCAACATGATGAGTTCA+AGG + chr3_2:17272103-17272122 None:intergenic 40.0%
TTCATCGGAACTGCTATCTT+GGG + chr3_2:17272167-17272186 None:intergenic 40.0%
AGCAGTTCCGATGAAGATTA+AGG - chr3_2:17272172-17272191 Msa0397540:intron 40.0%
!! CGTGTTTCTAGTGGGATAAT+CGG - chr3_2:17272222-17272241 Msa0397540:intron 40.0%
CCGAAAAGTAATCGAAAGCT+TGG - chr3_2:17272466-17272485 Msa0397540:intron 40.0%
GTTGTTAGGGGTTAAGGGAA+GGG + chr3_2:17267149-17267168 None:intergenic 45.0%
AGTTGTTAGGGGTTAAGGGA+AGG + chr3_2:17267150-17267169 None:intergenic 45.0%
ATGACTGTAGAGATGAACGG+CGG + chr3_2:17267211-17267230 None:intergenic 45.0%
!! AAAATAGACCGGTTCGGGTT+TGG - chr3_2:17267617-17267636 Msa0397540:CDS 45.0%
! ATGAGAGTGTGTTCCTCTCA+AGG - chr3_2:17267935-17267954 Msa0397540:intron 45.0%
! GTGTGTTCCTCTCAAGGTTT+TGG - chr3_2:17267941-17267960 Msa0397540:intron 45.0%
TTCGAACCCAAAACCTTGAG+AGG + chr3_2:17267951-17267970 None:intergenic 45.0%
! CTTCAATTGCGCCTTGTTAG+TGG - chr3_2:17268028-17268047 Msa0397540:intron 45.0%
! AATTGCGCCTTGTTAGTGGA+CGG - chr3_2:17268032-17268051 Msa0397540:intron 45.0%
! GGACGGTTAGATTGATTCTC+TGG - chr3_2:17268049-17268068 Msa0397540:intron 45.0%
!! CAGTTTTGGCCACCACATTA+AGG + chr3_2:17268147-17268166 None:intergenic 45.0%
GATTCCATCATGTGACTCCT+TGG - chr3_2:17268285-17268304 Msa0397540:intron 45.0%
!! ACCGTTCTACTAGTTTGCTG+TGG - chr3_2:17268444-17268463 Msa0397540:intron 45.0%
GCCACAGCAAACTAGTAGAA+CGG + chr3_2:17268448-17268467 None:intergenic 45.0%
CATGGCTGAAGAAACACAAG+TGG - chr3_2:17268954-17268973 Msa0397540:intron 45.0%
GAAACACAAGTGGTTGAGCA+TGG - chr3_2:17268964-17268983 Msa0397540:intron 45.0%
TGGGAAAGAGGAAGTTTGGT+AGG - chr3_2:17268995-17269014 Msa0397540:intron 45.0%
AGGAAGTTTGGTAGGAACCA+AGG - chr3_2:17269003-17269022 Msa0397540:intron 45.0%
! TGTGGTGGCTTCATCACTTT+TGG + chr3_2:17269051-17269070 None:intergenic 45.0%
AAAGTGATGAAGCCACCACA+CGG - chr3_2:17269051-17269070 Msa0397540:intron 45.0%
GTGGCATCTATGAAGACTAG+AGG - chr3_2:17269195-17269214 Msa0397540:intron 45.0%
CACCAAAAATAAGCACGTGG+AGG - chr3_2:17269230-17269249 Msa0397540:intron 45.0%
TTCTGCTACCCCTTCATCTT+CGG + chr3_2:17269280-17269299 None:intergenic 45.0%
! CTCTGAGGATGAAGATGATG+AGG - chr3_2:17269347-17269366 Msa0397540:intron 45.0%
TGAGGATGAAGATGATGAGG+AGG - chr3_2:17269350-17269369 Msa0397540:intron 45.0%
TATCTATCGGGTAAGCAGTC+TGG - chr3_2:17269751-17269770 Msa0397540:intron 45.0%
TGCGCGTCCAAATAATTAGC+AGG + chr3_2:17269828-17269847 None:intergenic 45.0%
TACAAAGCGACAAAGAGAGG+AGG + chr3_2:17270080-17270099 None:intergenic 45.0%
TTGCATCCCTGTTCTTTGAG+GGG + chr3_2:17270183-17270202 None:intergenic 45.0%
CTTTGCATCCCTGTTCTTTG+AGG + chr3_2:17270185-17270204 None:intergenic 45.0%
CTCAAAGAACAGGGATGCAA+AGG - chr3_2:17270183-17270202 Msa0397540:CDS 45.0%
TGAGCTGCATACAACCTCTT+TGG - chr3_2:17270460-17270479 Msa0397540:CDS 45.0%
GAGCTGCATACAACCTCTTT+GGG - chr3_2:17270461-17270480 Msa0397540:CDS 45.0%
ATACAACCTCTTTGGGCCTT+TGG - chr3_2:17270468-17270487 Msa0397540:CDS 45.0%
ATCCTCCTCACTGGAAATAG+AGG + chr3_2:17270703-17270722 None:intergenic 45.0%
! TGGTTCTATTTGGAGGAGCA+TGG + chr3_2:17271056-17271075 None:intergenic 45.0%
! ACAGGGATGGTTCTATTTGG+AGG + chr3_2:17271063-17271082 None:intergenic 45.0%
! CTGACAGGGATGGTTCTATT+TGG + chr3_2:17271066-17271085 None:intergenic 45.0%
CGCTGAAAAGAAGGCTTCTT+TGG + chr3_2:17271219-17271238 None:intergenic 45.0%
! GAAGCCTTCTTTTCAGCGTT+AGG - chr3_2:17271221-17271240 Msa0397540:intron 45.0%
CTTCCCTAACGCTGAAAAGA+AGG + chr3_2:17271228-17271247 None:intergenic 45.0%
ATCACCTTTGCACCAATAGC+TGG + chr3_2:17271251-17271270 None:intergenic 45.0%
GCCAATGCAAGCACAAACAA+GGG - chr3_2:17271947-17271966 Msa0397540:intron 45.0%
! TCCCTTGTTTGTGCTTGCAT+TGG + chr3_2:17271951-17271970 None:intergenic 45.0%
GAGAGGATGAACAACCTTCT+TGG - chr3_2:17271969-17271988 Msa0397540:intron 45.0%
CATGATGAGTTCAAGGTAGC+TGG + chr3_2:17272096-17272115 None:intergenic 45.0%
TCATCATGTTGCTCAACTGC+AGG - chr3_2:17272108-17272127 Msa0397540:intron 45.0%
CATCATGTTGCTCAACTGCA+GGG - chr3_2:17272109-17272128 Msa0397540:intron 45.0%
CTTCATCGGAACTGCTATCT+TGG + chr3_2:17272168-17272187 None:intergenic 45.0%
!! AGCATCAGCGTGTTTCTAGT+GGG - chr3_2:17272214-17272233 Msa0397540:intron 45.0%
! GGAGAAACTTGATGGCTGAT+TGG - chr3_2:17272302-17272321 Msa0397540:intron 45.0%
! AAACTTGATGGCTGATTGGC+TGG - chr3_2:17272306-17272325 Msa0397540:intron 45.0%
!!! TTTATTTATTTTGATTTTAT+TGG - chr3_2:17267449-17267468 Msa0397540:three_prime_UTR 5.0%
!!! ATATTATTTTCTTTTTTATT+AGG - chr3_2:17271667-17271686 Msa0397540:intron 5.0%
GTTGGTTACCAAACCCGAAC+CGG + chr3_2:17267628-17267647 None:intergenic 50.0%
!! TATATGGACTGGCCCGACAA+AGG + chr3_2:17267994-17268013 None:intergenic 50.0%
TTTGTCGGGCCAGTCCATAT+AGG - chr3_2:17267993-17268012 Msa0397540:intron 50.0%
TTGTCGGGCCAGTCCATATA+GGG - chr3_2:17267994-17268013 Msa0397540:intron 50.0%
TGACCCAAGGAGTCACATGA+TGG + chr3_2:17268292-17268311 None:intergenic 50.0%
ATCATGTGACTCCTTGGGTC+AGG - chr3_2:17268291-17268310 Msa0397540:intron 50.0%
TCATGTGACTCCTTGGGTCA+GGG - chr3_2:17268292-17268311 Msa0397540:intron 50.0%
GTTGAGCATGGAAGTGAGCT+GGG - chr3_2:17268976-17268995 Msa0397540:intron 50.0%
ATGGAAGTGAGCTGGGAAAG+AGG - chr3_2:17268983-17269002 Msa0397540:intron 50.0%
GAGCTGGGAAAGAGGAAGTT+TGG - chr3_2:17268991-17269010 Msa0397540:intron 50.0%
ACTTTCTTCTGTCCGTGTGG+TGG + chr3_2:17269066-17269085 None:intergenic 50.0%
TCTAGTACTCCCAGTAGCAG+GGG + chr3_2:17269172-17269191 None:intergenic 50.0%
GTCTAGTACTCCCAGTAGCA+GGG + chr3_2:17269173-17269192 None:intergenic 50.0%
!! TACTGGGAGTACTAGACGTG+TGG - chr3_2:17269176-17269195 Msa0397540:intron 50.0%
GAAGATGAAGGGGTAGCAGA+AGG - chr3_2:17269279-17269298 Msa0397540:intron 50.0%
GAGGAGGATGAAATTCAGCC+AGG - chr3_2:17269366-17269385 Msa0397540:intron 50.0%
GAGACAGAGCGCAAGATCAA+GGG - chr3_2:17269610-17269629 Msa0397540:CDS 50.0%
! TCAAGTTGCTCAGAAAGGGC+TGG - chr3_2:17270156-17270175 Msa0397540:CDS 50.0%
GCTACAACCACTATGGCCAA+AGG + chr3_2:17270487-17270506 None:intergenic 50.0%
CTCACTGGAAATAGAGGAGG+AGG + chr3_2:17270697-17270716 None:intergenic 50.0%
CTCCTCCTCTATTTCCAGTG+AGG - chr3_2:17270695-17270714 Msa0397540:CDS 50.0%
CTCCTCACTGGAAATAGAGG+AGG + chr3_2:17270700-17270719 None:intergenic 50.0%
CTCCTCTATTTCCAGTGAGG+AGG - chr3_2:17270698-17270717 Msa0397540:CDS 50.0%
TGAAGGATCATCCTCCTCAC+TGG + chr3_2:17270712-17270731 None:intergenic 50.0%
AAATAAGAGGGGTCGGGACT+TGG - chr3_2:17271028-17271047 Msa0397540:intron 50.0%
AATAAGAGGGGTCGGGACTT+GGG - chr3_2:17271029-17271048 Msa0397540:intron 50.0%
ACCATCCCTGTCAGAGTTCT+AGG - chr3_2:17271072-17271091 Msa0397540:intron 50.0%
ACCTAGAACTCTGACAGGGA+TGG + chr3_2:17271076-17271095 None:intergenic 50.0%
GAAGCCAGCTATTGGTGCAA+AGG - chr3_2:17271244-17271263 Msa0397540:intron 50.0%
GGCCAATGCAAGCACAAACA+AGG - chr3_2:17271946-17271965 Msa0397540:intron 50.0%
TGCAAGCACAAACAAGGGAG+AGG - chr3_2:17271952-17271971 Msa0397540:intron 50.0%
!! CAGCATCAGCGTGTTTCTAG+TGG - chr3_2:17272213-17272232 Msa0397540:intron 50.0%
ATGAACGGCGGAAGTGACAG+CGG + chr3_2:17267199-17267218 None:intergenic 55.0%
ATTGAACAGGCCCTGACCCA+AGG + chr3_2:17268305-17268324 None:intergenic 55.0%
GGTTGAGCATGGAAGTGAGC+TGG - chr3_2:17268975-17268994 Msa0397540:intron 55.0%
AGACAACTGCCCCTGCTACT+GGG - chr3_2:17269160-17269179 Msa0397540:intron 55.0%
CGTCTAGTACTCCCAGTAGC+AGG + chr3_2:17269174-17269193 None:intergenic 55.0%
GGAGACAGAGCGCAAGATCA+AGG - chr3_2:17269609-17269628 Msa0397540:CDS 55.0%
GCTGGACCCCTCAAAGAACA+GGG - chr3_2:17270174-17270193 Msa0397540:CDS 55.0%
CTATGGCCAAAGGCCCAAAG+AGG + chr3_2:17270477-17270496 None:intergenic 55.0%
CTTTGGGCCTTTGGCCATAG+TGG - chr3_2:17270477-17270496 Msa0397540:CDS 55.0%
GCGTTAGGGAAGCCAGCTAT+TGG - chr3_2:17271236-17271255 Msa0397540:intron 55.0%
! TCGCGTAATGGAGCCCAAGA+AGG + chr3_2:17271986-17272005 None:intergenic 55.0%
!! ATGGCTGATTGGCTGGCCTT+TGG - chr3_2:17272313-17272332 Msa0397540:intron 55.0%
GAAGTGACAGCGGCTGGGAA+AGG + chr3_2:17267189-17267208 None:intergenic 60.0%
! GTAACCTTCAGGGGTTGGCG+TGG - chr3_2:17267895-17267914 Msa0397540:intron 60.0%
! TTGGCGTGGTGGTGTAGGCT+TGG - chr3_2:17267909-17267928 Msa0397540:intron 60.0%
! TGGCGTGGTGGTGTAGGCTT+GGG - chr3_2:17267910-17267929 Msa0397540:intron 60.0%
GAGACAACTGCCCCTGCTAC+TGG - chr3_2:17269159-17269178 Msa0397540:intron 60.0%
GGCTGGACCCCTCAAAGAAC+AGG - chr3_2:17270173-17270192 Msa0397540:CDS 60.0%
! ACCTTCAGGGGTTGGCGTGG+TGG - chr3_2:17267898-17267917 Msa0397540:intron 65.0%
ACCACCACGCCAACCCCTGA+AGG + chr3_2:17267902-17267921 None:intergenic 65.0%
! AGGGGTTGGCGTGGTGGTGT+AGG - chr3_2:17267904-17267923 Msa0397540:intron 65.0%
CGGCGGAAGTGACAGCGGCT+GGG + chr3_2:17267194-17267213 None:intergenic 70.0%
ACGGCGGAAGTGACAGCGGC+TGG + chr3_2:17267195-17267214 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 17267138 17272647 17267138 ID=Msa0397540;Name=Msa0397540
chr3_2 mRNA 17267138 17272647 17267138 ID=Msa0397540-mRNA-1;Parent=Msa0397540;Name=Msa0397540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=159|1|1|1|0.87|0.77|9|455|340
chr3_2 exon 17267138 17267655 17267138 ID=Msa0397540-mRNA-1:exon:3863;Parent=Msa0397540-mRNA-1
chr3_2 exon 17267728 17267838 17267728 ID=Msa0397540-mRNA-1:exon:3862;Parent=Msa0397540-mRNA-1
chr3_2 exon 17268520 17268584 17268520 ID=Msa0397540-mRNA-1:exon:3861;Parent=Msa0397540-mRNA-1
chr3_2 exon 17269580 17269640 17269580 ID=Msa0397540-mRNA-1:exon:3860;Parent=Msa0397540-mRNA-1
chr3_2 exon 17269755 17269774 17269755 ID=Msa0397540-mRNA-1:exon:3859;Parent=Msa0397540-mRNA-1
chr3_2 exon 17269903 17269984 17269903 ID=Msa0397540-mRNA-1:exon:3858;Parent=Msa0397540-mRNA-1
chr3_2 exon 17270128 17270229 17270128 ID=Msa0397540-mRNA-1:exon:3857;Parent=Msa0397540-mRNA-1
chr3_2 exon 17270312 17270850 17270312 ID=Msa0397540-mRNA-1:exon:3856;Parent=Msa0397540-mRNA-1
chr3_2 exon 17272509 17272647 17272509 ID=Msa0397540-mRNA-1:exon:3855;Parent=Msa0397540-mRNA-1
chr3_2 five_prime_UTR 17272509 17272647 17272509 ID=Msa0397540-mRNA-1:five_prime_utr;Parent=Msa0397540-mRNA-1
chr3_2 five_prime_UTR 17270831 17270850 17270831 ID=Msa0397540-mRNA-1:five_prime_utr;Parent=Msa0397540-mRNA-1
chr3_2 CDS 17270312 17270830 17270312 ID=Msa0397540-mRNA-1:cds;Parent=Msa0397540-mRNA-1
chr3_2 CDS 17270128 17270229 17270128 ID=Msa0397540-mRNA-1:cds;Parent=Msa0397540-mRNA-1
chr3_2 CDS 17269903 17269984 17269903 ID=Msa0397540-mRNA-1:cds;Parent=Msa0397540-mRNA-1
chr3_2 CDS 17269755 17269774 17269755 ID=Msa0397540-mRNA-1:cds;Parent=Msa0397540-mRNA-1
chr3_2 CDS 17269580 17269640 17269580 ID=Msa0397540-mRNA-1:cds;Parent=Msa0397540-mRNA-1
chr3_2 CDS 17268520 17268584 17268520 ID=Msa0397540-mRNA-1:cds;Parent=Msa0397540-mRNA-1
chr3_2 CDS 17267728 17267838 17267728 ID=Msa0397540-mRNA-1:cds;Parent=Msa0397540-mRNA-1
chr3_2 CDS 17267593 17267655 17267593 ID=Msa0397540-mRNA-1:cds;Parent=Msa0397540-mRNA-1
chr3_2 three_prime_UTR 17267138 17267592 17267138 ID=Msa0397540-mRNA-1:three_prime_utr;Parent=Msa0397540-mRNA-1
Gene Sequence

>Msa0397540

ATGGCTGAAGAAACACAAGTGGTTGAGCATGGAAGTGAGCTGGGAAAGAGGAAGTTTGGTAGGAACCAAGGCCGTAAAAAGTCAAGTAAGAAACCAAAAGTGATGAAGCCACCACACGGACAGAAGAAAGTTAAAATCAACCAACAAATGAAGAAACTTTACAACAAGCGAGCACGCGAGTATAATTCTGATGATGATGAAGATGAGACAACTGCCCCTGCTACTGGGAGTACTAGACGTGTGGCATCTATGAAGACTAGAGGCGTCACATCTTTCACCAAAAATAAGCACGTGGAGGAAGACATAGAAAGTGAAGATCTATCCGAAGATGAAGGGGTAGCAGAAGGACAAAGAACACAGAAGAAGCATGTTACTGATAAGAAAGTTAATTTCTCTGAGGATGAAGATGATGAGGAGGATGAAATTCAGCCAGGAATTACGAAATTCAGTGAAGGTTGTAAAGCATTCAGGATGGCCTTCAAGAGCATTATAAAGAAGAGTGTTTCTGATGAGTTGTTGGGTCCAGTATTGTCAGATCACAAGAATCTTGTTATAGAAAAGCTTGCGGAAGAGGAGACAGAGCGCAAGATCAAGGGAGAGACAAAAAAGGAAAAGCTGATGCTAGCAGAAAAGGGACATGTCACACCTGCTAATTATTTGGACGCGCACGAAAAGTTTCTTATAAGTGTAGCGACAAAAGGAGTGGTCAAGCTGTTCAATGCTGTCAACAAAGCTCAAGTTGCTCAGAAAGGGCTGGACCCCTCAAAGAACAGGGATGCAAAGGTTATAAAGAAGCGCACCAAAGAAGCCTTCTTTTCAGCGTTAGGGAAGCCAGCTATTGGTGCAAAGGCCAATGCAAGCACAAACAAGGGAGAGGATGAACAACCTTCTTGGGCTCCATTACGCGATAATTATATGCTGACAAGTTCGAGAATAAAGGATTGGGACAAAAACGCACCAGGTAAAAATGAATCAGATGACATTGAAAAGATTTCCCAAGATAGCAGTTCCGATGAAGATTAA

Protein sequence

>Msa0397540

MAEETQVVEHGSELGKRKFGRNQGRKKSSKKPKVMKPPHGQKKVKINQQMKKLYNKRAREYNSDDDEDETTAPATGSTRRVASMKTRGVTSFTKNKHVEEDIESEDLSEDEGVAEGQRTQKKHVTDKKVNFSEDEDDEEDEIQPGITKFSEGCKAFRMAFKSIIKKSVSDELLGPVLSDHKNLVIEKLAEEETERKIKGETKKEKLMLAEKGHVTPANYLDAHEKFLISVATKGVVKLFNAVNKAQVAQKGLDPSKNRDAKVIKKRTKEAFFSALGKPAIGAKANASTNKGEDEQPSWAPLRDNYMLTSSRIKDWDKNAPGKNESDDIEKISQDSSSDED*