AlfalfaGEDB | Msa0447180

M. sativa cultivar zhongmu-4 / Msa0447180

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0447180	XP_013459180.1	96.793	343	7	3	1	339	1	343	0.0	674

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0447180	sp\|Q9C6U1\|MYB83_ARATH	45.179	363	154	9	1	339	1	342	8.76e-80	249

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0447180	A0A072UVZ0	96.793	343	7	3	1	339	1	343	0.0	674

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TFs/TRs:

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Gene ID	Type	Classification
Msa0447180	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0400030	Msa0447180	0.909938	3.272866e-82	-8.615850e-47
Msa0443810	Msa0447180	0.853527	2.253263e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0447180	MtrunA17_Chr3g0088461	96.793	343	7	3	1	339	1	343	0.0	674
Msa0447180	MtrunA17_Chr4g0032401	44.687	367	134	12	3	337	1	330	8.09e-84	256
Msa0447180	MtrunA17_Chr2g0328771	46.491	342	145	10	3	332	1	316	2.98e-76	237
Msa0447180	MtrunA17_Chr1g0193371	58.491	159	66	0	19	177	9	167	4.54e-59	194
Msa0447180	MtrunA17_Chr1g0193801	76.147	109	26	0	19	127	9	117	7.30e-58	191
Msa0447180	MtrunA17_Chr1g0211161	59.146	164	63	3	19	180	10	171	2.02e-57	186
Msa0447180	MtrunA17_Chr2g0330041	73.394	109	29	0	18	126	8	116	3.17e-57	190
Msa0447180	MtrunA17_Chr8g0342541	72.477	109	30	0	18	126	8	116	4.11e-57	188
Msa0447180	MtrunA17_Chr3g0117091	59.064	171	59	4	19	182	9	175	4.49e-57	188
Msa0447180	MtrunA17_Chr7g0270891	76.147	109	26	0	19	127	9	117	4.58e-57	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0447180	AT3G08500.1	45.179	363	154	9	1	339	1	342	8.90e-81	249
Msa0447180	AT5G12870.1	78.400	125	25	1	3	127	1	123	1.54e-69	219
Msa0447180	AT4G01680.3	77.982	109	24	0	19	127	9	117	3.16e-59	191
Msa0447180	AT4G01680.1	77.982	109	24	0	19	127	9	117	1.43e-58	192
Msa0447180	AT5G26660.1	53.226	186	71	2	19	204	9	178	1.53e-58	192
Msa0447180	AT1G09540.1	76.147	109	26	0	19	127	9	117	4.10e-58	192
Msa0447180	AT3G13890.2	74.312	109	28	0	18	126	8	116	4.78e-58	191
Msa0447180	AT1G57560.2	75.000	108	27	0	19	126	9	116	4.55e-57	186
Msa0447180	AT1G57560.1	75.000	108	27	0	19	126	9	116	4.84e-57	187
Msa0447180	AT1G63910.1	68.182	110	35	0	18	127	8	117	2.18e-55	185

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Find 142 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAAGAATGGGAGAA+TGG	0.437647	3_3:+24620029	Msa0447180:CDS
AAAAGGTAGATGGGCCGAAG+AGG	0.611350	3_3:+24620463	Msa0447180:three_prime_UTR
AAAATACCTTATGGAATCTT+GGG	0.410847	3_3:+24620709	Msa0447180:three_prime_UTR
AAAATTCTTTATTTCATTGT+CGG	0.387116	3_3:-24619420	None:intergenic
AAACCCAAACAAGTCCTCAT+TGG	0.462806	3_3:-24619987	None:intergenic
AAACTTAAGAATGGGAGAAT+GGG	0.456783	3_3:+24620030	Msa0447180:CDS
AAATTGGTCAGGTAAAACCA+TGG	0.714456	3_3:-24619657	None:intergenic
AACAAGAGCAAGCTAAGGAA+AGG	0.537747	3_3:+24617555	Msa0447180:CDS
AACCATGGTATGCATGTGCA+TGG	0.586474	3_3:-24619642	None:intergenic
AACGAACCTTAAGGTGCAGC+CGG	0.573342	3_3:+24620185	Msa0447180:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACATGATAACTAAAGGACA+AGG	+	chr3_3:24617615-24617634	Msa0447180:CDS	30.0%
AGTAATTAATCCAACGAAGA+CGG	-	chr3_3:24617695-24617714	None:intergenic	30.0%
ATCCTAAAATGTAACCAATC+TGG	+	chr3_3:24618450-24618469	Msa0447180:intron	30.0%
AAATCTTAAGATCTTAGTGG+GGG	-	chr3_3:24618670-24618689	None:intergenic	30.0%
TAATATGTAACACAGACAGT+TGG	-	chr3_3:24618799-24618818	None:intergenic	30.0%
AGAACTAATGACATTATGCA+TGG	+	chr3_3:24619583-24619602	Msa0447180:CDS	30.0%
ACAAGGAAAATGGATCAAAT+TGG	-	chr3_3:24619676-24619695	None:intergenic	30.0%
TTGTTAGACAACAAGGAAAA+TGG	-	chr3_3:24619686-24619705	None:intergenic	30.0%
GAAAACTTGTCATGTCATAA+CGG	-	chr3_3:24619709-24619728	None:intergenic	30.0%
CTTCATAGTGATGATCATTA+TGG	+	chr3_3:24619791-24619810	Msa0447180:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	24617366	24621204	24617366	ID=Msa0447180;Name=Msa0447180
chr3_3	mRNA	24617366	24621204	24617366	ID=Msa0447180-mRNA-1;Parent=Msa0447180;Name=Msa0447180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=138\|1\|1\|1\|1\|1\|2\|1093\|339
chr3_3	exon	24617366	24617796	24617366	ID=Msa0447180-mRNA-1:exon:4882;Parent=Msa0447180-mRNA-1
chr3_3	exon	24619385	24621204	24619385	ID=Msa0447180-mRNA-1:exon:4883;Parent=Msa0447180-mRNA-1
chr3_3	five_prime_UTR	24617366	24617503	24617366	ID=Msa0447180-mRNA-1:five_prime_utr;Parent=Msa0447180-mRNA-1
chr3_3	CDS	24617504	24617796	24617504	ID=Msa0447180-mRNA-1:cds;Parent=Msa0447180-mRNA-1
chr3_3	CDS	24619385	24620111	24619385	ID=Msa0447180-mRNA-1:cds;Parent=Msa0447180-mRNA-1
chr3_3	three_prime_UTR	24620112	24621204	24620112	ID=Msa0447180-mRNA-1:three_prime_utr;Parent=Msa0447180-mRNA-1

Gene Sequence

>Msa0447180

ATGCAAATGAGGAAACCTGATTTGATCATGGGAAAAGACAACAACAACATTAACAAGAGCAAGCTAAGGAAAGGGTTATGGTCACCTGAGGAAGATGAGAAGTTGGTAAGATACATGATAACTAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGTAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTTAAGCGCGGCGCATTTTCGCCACAAGAGGAAGAACTCATCATTCATTTCCACTCCATTCTTGGCAACAGATGGTCCCAAATTGCAGCACGTCTACCTGGTCGTACCGACAATGAAATAAAGAATTTTTGGAATTCCACACTGAAGAAAAGATTGAAAACCAACAACAACAACTCTACTCCATCTCCAAACAACAGTGACACTTCGGATCAACCAATAGATAATGTTTTTGATGTGAAAAATAACATGATCATGCCAATTAATGAACAAGAACTAATGACATTATGCATGGATTCCTCATCATCATCTTCATCATCATCCATGCAATCCATGCACATGCATACCATGGTTTTACCTGACCAATTTGATCCATTTTCCTTGTTGTCTAACAACCGTTATGACATGACAAGTTTTCATGCTCATGACTTGCCAAATAGTTGTTTAACACAAGTTGGCAATATGGTTGATGATATTGGGCTTCATAGTGATGATCATTATGGGATTTTGGAGGCTAATAAAATGGGGTTATTAGAAAATGATTTTGAACTTCCTCCACTAGAGAGTAGAATTAGCATTGAAGATAAGAGTGCCCTAATTGGTGATTATAATGTGAAAAGCCATAACAACCACTTCAATAATAGTTGCTTCAATAACACTAATCACATTCAAAACTCCAATGAGGACTTGTTTGGGTTTGGAAGTCATGGGCAAGGAGAAAACTTAAGAATGGGAGAATGGGATTTGGAGGGTTTGATGCAAGACATATCCTATTTTCCTCCTCTTGATTTCCAAGTTTAA

Protein sequence

>Msa0447180

MQMRKPDLIMGKDNNNINKSKLRKGLWSPEEDEKLVRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNNSTPSPNNSDTSDQPIDNVFDVKNNMIMPINEQELMTLCMDSSSSSSSSSMQSMHMHTMVLPDQFDPFSLLSNNRYDMTSFHAHDLPNSCLTQVGNMVDDIGLHSDDHYGILEANKMGLLENDFELPPLESRISIEDKSALIGDYNVKSHNNHFNNSCFNNTNHIQNSNEDLFGFGSHGQGENLRMGEWDLEGLMQDISYFPPLDFQV*