AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0447180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0447180 MtrunA17_Chr3g0088461 96.793 343 7 3 1 339 1 343 0.0 674
Msa0447180 MtrunA17_Chr4g0032401 44.687 367 134 12 3 337 1 330 8.09e-84 256
Msa0447180 MtrunA17_Chr2g0328771 46.491 342 145 10 3 332 1 316 2.98e-76 237
Msa0447180 MtrunA17_Chr1g0193371 58.491 159 66 0 19 177 9 167 4.54e-59 194
Msa0447180 MtrunA17_Chr1g0193801 76.147 109 26 0 19 127 9 117 7.30e-58 191
Msa0447180 MtrunA17_Chr1g0211161 59.146 164 63 3 19 180 10 171 2.02e-57 186
Msa0447180 MtrunA17_Chr2g0330041 73.394 109 29 0 18 126 8 116 3.17e-57 190
Msa0447180 MtrunA17_Chr8g0342541 72.477 109 30 0 18 126 8 116 4.11e-57 188
Msa0447180 MtrunA17_Chr3g0117091 59.064 171 59 4 19 182 9 175 4.49e-57 188
Msa0447180 MtrunA17_Chr7g0270891 76.147 109 26 0 19 127 9 117 4.58e-57 189
Msa0447180 MtrunA17_Chr8g0342521 73.394 109 29 0 18 126 8 116 7.71e-57 188
Msa0447180 MtrunA17_Chr4g0058631 76.852 108 25 0 19 126 9 116 1.22e-56 187
Msa0447180 MtrunA17_Chr8g0387421 67.273 110 36 0 18 127 8 117 1.47e-54 181
Msa0447180 MtrunA17_Chr8g0342481 66.942 121 39 1 18 137 8 128 3.52e-54 182
Msa0447180 MtrunA17_Chr5g0397231 69.903 103 31 0 18 120 8 110 1.86e-53 179
Msa0447180 MtrunA17_Chr7g0271241 60.403 149 44 2 19 152 9 157 2.25e-53 180
Msa0447180 MtrunA17_Chr2g0309911 43.243 222 109 6 18 229 7 221 1.10e-52 176
Msa0447180 MtrunA17_Chr1g0203441 70.370 108 32 0 19 126 10 117 5.00e-50 168
Msa0447180 MtrunA17_Chr4g0037141 34.062 320 152 9 19 325 9 282 3.50e-49 166
Msa0447180 MtrunA17_Chr6g0470971 66.055 109 37 0 17 125 9 117 5.03e-48 163
Msa0447180 MtrunA17_Chr3g0131121 64.815 108 38 0 19 126 9 116 5.71e-48 163
Msa0447180 MtrunA17_Chr5g0435101 58.871 124 42 2 3 126 1 115 5.90e-48 160
Msa0447180 MtrunA17_Chr2g0323411 66.972 109 36 0 18 126 8 116 6.42e-48 164
Msa0447180 MtrunA17_Chr3g0115821 65.138 109 38 0 18 126 8 116 7.63e-48 164
Msa0447180 MtrunA17_Chr2g0281071 67.619 105 34 0 22 126 13 117 8.28e-48 164
Msa0447180 MtrunA17_Chr2g0323351 55.303 132 56 1 18 146 8 139 2.80e-47 160
Msa0447180 MtrunA17_Chr4g0048511 66.667 105 35 0 22 126 13 117 5.57e-47 162
Msa0447180 MtrunA17_Chr8g0385321 61.261 111 43 0 24 134 14 124 7.76e-47 160
Msa0447180 MtrunA17_Chr1g0203411 54.615 130 57 1 19 146 9 138 1.04e-46 160
Msa0447180 MtrunA17_Chr7g0217741 64.815 108 38 0 19 126 9 116 6.32e-46 158
Msa0447180 MtrunA17_Chr6g0453471 64.220 109 39 0 18 126 8 116 8.55e-46 159
Msa0447180 MtrunA17_Chr4g0042671 65.741 108 37 0 19 126 9 116 1.27e-45 160
Msa0447180 MtrunA17_Chr4g0022931 56.061 132 55 1 19 147 10 141 2.25e-45 155
Msa0447180 MtrunA17_Chr7g0274581 62.264 106 40 0 22 127 12 117 2.25e-45 154
Msa0447180 MtrunA17_Chr8g0349261 61.017 118 45 1 10 126 1 118 2.36e-45 156
Msa0447180 MtrunA17_Chr4g0057031 61.468 109 42 0 18 126 8 116 2.70e-45 155
Msa0447180 MtrunA17_Chr5g0410961 61.905 105 40 0 22 126 12 116 4.51e-45 157
Msa0447180 MtrunA17_Chr3g0110351 61.818 110 42 0 18 127 8 117 6.22e-45 155
Msa0447180 MtrunA17_Chr4g0044421 58.065 124 44 1 3 126 1 116 6.66e-45 152
Msa0447180 MtrunA17_Chr5g0434571 55.556 144 57 4 9 146 36 178 8.23e-45 157
Msa0447180 MtrunA17_Chr5g0395281 63.303 109 40 0 18 126 8 116 1.18e-44 155
Msa0447180 MtrunA17_Chr4g0070611 58.678 121 46 1 19 135 9 129 1.29e-44 155
Msa0447180 MtrunA17_Chr4g0070641 58.197 122 47 1 19 136 9 130 1.81e-44 150
Msa0447180 MtrunA17_Chr1g0167661 57.364 129 55 0 19 147 9 137 2.27e-44 152
Msa0447180 MtrunA17_Chr4g0039971 61.468 109 42 0 18 126 9 117 2.96e-44 155
Msa0447180 MtrunA17_Chr6g0452271 57.798 109 46 0 18 126 8 116 3.45e-44 154
Msa0447180 MtrunA17_Chr4g0068061 61.111 108 42 0 19 126 9 116 6.90e-44 154
Msa0447180 MtrunA17_Chr4g0022901 62.617 107 40 0 19 125 10 116 1.26e-43 151
Msa0447180 MtrunA17_Chr1g0187761 55.556 135 54 1 19 147 9 143 1.30e-43 150
Msa0447180 MtrunA17_Chr7g0275911 59.091 110 45 0 18 127 8 117 2.08e-43 150
Msa0447180 MtrunA17_Chr7g0228891 60.909 110 43 0 18 127 8 117 2.62e-43 150
Msa0447180 MtrunA17_Chr8g0343831 61.538 104 40 0 24 127 10 113 3.42e-43 149
Msa0447180 MtrunA17_Chr8g0346561 53.125 128 59 1 19 146 9 135 4.20e-43 150
Msa0447180 MtrunA17_Chr3g0103281 62.037 108 41 0 19 126 9 116 4.95e-43 151
Msa0447180 MtrunA17_Chr7g0261281 59.664 119 45 1 19 134 9 127 6.31e-43 149
Msa0447180 MtrunA17_Chr3g0121241 59.259 108 44 0 19 126 39 146 9.52e-43 150
Msa0447180 MtrunA17_Chr1g0167691 62.963 108 40 0 19 126 9 116 1.40e-42 148
Msa0447180 MtrunA17_Chr4g0055981 55.085 118 53 0 8 125 41 158 2.35e-42 147
Msa0447180 MtrunA17_Chr4g0022911 48.993 149 72 2 20 166 11 157 3.33e-42 148
Msa0447180 MtrunA17_Chr7g0254411 50.331 151 68 3 19 164 9 157 1.22e-41 148
Msa0447180 MtrunA17_Chr7g0228231 53.982 113 52 0 22 134 14 126 1.56e-41 144
Msa0447180 MtrunA17_Chr1g0151941 49.612 129 55 2 18 136 8 136 2.74e-41 144
Msa0447180 MtrunA17_Chr1g0194951 60.185 108 43 0 19 126 9 116 4.93e-41 147
Msa0447180 MtrunA17_Chr6g0450101 53.448 116 54 0 12 127 4 119 9.28e-41 142
Msa0447180 MtrunA17_Chr2g0311221 61.165 103 40 0 18 120 10 112 1.15e-40 145
Msa0447180 MtrunA17_Chr1g0209661 53.982 113 52 0 15 127 20 132 1.47e-40 144
Msa0447180 MtrunA17_Chr1g0168661 60.000 105 42 0 23 127 22 126 1.79e-40 142
Msa0447180 MtrunA17_Chr7g0217221 55.932 118 49 1 17 131 7 124 5.45e-40 142
Msa0447180 MtrunA17_Chr1g0186061 51.639 122 59 0 17 138 15 136 8.07e-40 140
Msa0447180 MtrunA17_Chr4g0060721 39.444 180 99 1 19 198 10 179 1.98e-39 142
Msa0447180 MtrunA17_Chr8g0342511 71.605 81 23 0 17 97 7 87 2.88e-39 134
Msa0447180 MtrunA17_Chr3g0099131 54.630 108 49 0 20 127 39 146 4.35e-39 145
Msa0447180 MtrunA17_Chr8g0342531 64.773 88 31 0 12 99 2 89 5.24e-39 135
Msa0447180 MtrunA17_Chr5g0417821 59.048 105 43 0 22 126 7 111 7.54e-39 139
Msa0447180 MtrunA17_Chr3g0092401 55.357 112 50 0 19 130 10 121 7.97e-39 140
Msa0447180 MtrunA17_Chr1g0180391 49.618 131 64 1 22 150 19 149 1.08e-38 137
Msa0447180 MtrunA17_Chr1g0194291 57.273 110 47 0 18 127 17 126 1.09e-38 138
Msa0447180 MtrunA17_Chr1g0154031 56.481 108 47 0 22 129 76 183 1.11e-38 142
Msa0447180 MtrunA17_Chr4g0022881 48.092 131 68 0 17 147 7 137 1.15e-38 137
Msa0447180 MtrunA17_Chr6g0453211 58.252 103 43 0 18 120 8 110 2.07e-38 139
Msa0447180 MtrunA17_Chr3g0080861 55.140 107 48 0 22 128 37 143 2.42e-38 142
Msa0447180 MtrunA17_Chr5g0400821 37.156 218 119 5 18 233 8 209 2.77e-38 138
Msa0447180 MtrunA17_Chr4g0022891 46.154 143 73 1 18 160 8 146 2.90e-38 136
Msa0447180 MtrunA17_Chr1g0152011 56.364 110 47 1 18 126 8 117 4.05e-38 139
Msa0447180 MtrunA17_Chr8g0354661 55.769 104 46 0 22 125 37 140 6.39e-38 142
Msa0447180 MtrunA17_Chr4g0028311 55.455 110 48 1 18 126 8 117 7.41e-38 137
Msa0447180 MtrunA17_Chr7g0247131 74.667 75 19 0 54 128 10 84 1.59e-37 135
Msa0447180 MtrunA17_Chr7g0269831 57.851 121 51 0 19 139 9 129 2.35e-37 137
Msa0447180 MtrunA17_Chr3g0135311 53.636 110 50 1 18 126 8 117 2.96e-37 136
Msa0447180 MtrunA17_Chr7g0264641 48.760 121 61 1 18 137 8 128 8.72e-37 133
Msa0447180 MtrunA17_Chr1g0194301 53.774 106 49 0 22 127 33 138 1.03e-36 133
Msa0447180 MtrunA17_Chr4g0030881 50.833 120 52 1 23 135 8 127 1.17e-36 132
Msa0447180 MtrunA17_Chr8g0342461 68.675 83 25 1 18 99 8 90 1.71e-36 128
Msa0447180 MtrunA17_Chr2g0327351 55.769 104 45 1 18 120 8 111 2.82e-36 133
Msa0447180 MtrunA17_Chr8g0342471 68.675 83 25 1 18 99 8 90 3.24e-36 127
Msa0447180 MtrunA17_Chr2g0322521 53.636 110 51 0 19 128 26 135 4.19e-36 134
Msa0447180 MtrunA17_Chr2g0327821 50.000 118 59 0 19 136 3 120 4.33e-36 130
Msa0447180 MtrunA17_Chr5g0434931 48.855 131 61 4 1 126 10 139 3.17e-35 129
Msa0447180 MtrunA17_Chr7g0240821 49.138 116 59 0 27 142 6 121 7.81e-35 127
Msa0447180 MtrunA17_Chr6g0487491 42.262 168 85 4 18 173 8 175 7.88e-35 128
Msa0447180 MtrunA17_Chr4g0054391 55.340 103 45 1 18 119 8 110 9.79e-35 128
Msa0447180 MtrunA17_Chr5g0434911 47.581 124 62 1 6 126 2 125 1.32e-34 127
Msa0447180 MtrunA17_Chr4g0072751 53.846 104 47 1 18 120 8 111 1.75e-34 129
Msa0447180 MtrunA17_Chr1g0192411 52.336 107 51 0 21 127 11 117 3.91e-34 129
Msa0447180 MtrunA17_Chr2g0293911 55.660 106 47 0 22 127 24 129 4.10e-34 127
Msa0447180 MtrunA17_Chr8g0360111 53.333 105 49 0 18 122 21 125 6.31e-34 125
Msa0447180 MtrunA17_Chr4g0068921 54.717 106 48 0 22 127 24 129 1.07e-33 123
Msa0447180 MtrunA17_Chr5g0434831 52.381 105 50 0 22 126 7 111 3.38e-33 121
Msa0447180 MtrunA17_Chr7g0220341 45.455 132 70 1 18 147 21 152 4.73e-33 123
Msa0447180 MtrunA17_Chr5g0440781 48.305 118 57 2 23 139 13 127 7.29e-33 120
Msa0447180 MtrunA17_Chr5g0440761 48.305 118 57 2 23 139 13 127 1.67e-32 122
Msa0447180 MtrunA17_Chr5g0441141 48.305 118 57 2 23 139 13 127 1.78e-32 122
Msa0447180 MtrunA17_Chr4g0042611 60.000 80 32 0 19 98 9 88 4.23e-32 115
Msa0447180 MtrunA17_Chr5g0434841 49.524 105 53 0 22 126 20 124 1.42e-31 120
Msa0447180 MtrunA17_Chr7g0228991 51.887 106 49 2 22 126 29 133 2.20e-31 119
Msa0447180 MtrunA17_Chr5g0395221 64.198 81 29 0 18 98 8 88 8.40e-31 112
Msa0447180 MtrunA17_Chr5g0441131 44.355 124 65 2 23 145 10 130 4.72e-30 113
Msa0447180 MtrunA17_Chr8g0334881 50.962 104 50 1 22 124 10 113 1.76e-29 115
Msa0447180 MtrunA17_Chr2g0323321 58.889 90 32 1 13 102 7 91 2.00e-29 109
Msa0447180 MtrunA17_Chr4g0013361 49.573 117 56 3 22 137 10 124 2.24e-29 114
Msa0447180 MtrunA17_Chr4g0053431 41.566 166 76 4 24 169 5 169 2.81e-29 113
Msa0447180 MtrunA17_Chr4g0008551 54.902 102 45 1 24 125 38 138 4.41e-29 114
Msa0447180 MtrunA17_Chr5g0401731 37.500 200 91 6 13 180 2 199 2.98e-28 112
Msa0447180 MtrunA17_Chr5g0429661 41.880 117 67 1 9 125 107 222 3.25e-28 112
Msa0447180 MtrunA17_Chr3g0099141 49.425 87 44 0 18 104 36 122 3.36e-28 107
Msa0447180 MtrunA17_Chr6g0454921 49.524 105 52 1 24 128 15 118 8.53e-28 107
Msa0447180 MtrunA17_Chr3g0133601 53.636 110 50 1 16 125 29 137 1.82e-27 107
Msa0447180 MtrunA17_Chr2g0294811 56.790 81 35 0 18 98 8 88 2.62e-27 103
Msa0447180 MtrunA17_Chr3g0117511 30.515 272 167 8 4 272 170 422 1.15e-26 109
Msa0447180 MtrunA17_Chr7g0238631 50.000 106 52 1 21 126 110 214 5.85e-26 108
Msa0447180 MtrunA17_Chr5g0417621 42.149 121 69 1 11 131 121 240 2.26e-25 105
Msa0447180 MtrunA17_Chr5g0437321 51.515 99 47 1 24 122 19 116 2.78e-25 103
Msa0447180 MtrunA17_Chr3g0139671 49.057 106 53 1 21 126 82 186 3.15e-25 106
Msa0447180 MtrunA17_Chr5g0434901 60.294 68 27 0 56 123 7 74 1.21e-24 96.7
Msa0447180 MtrunA17_Chr7g0229131 39.456 147 77 4 54 197 4 141 1.39e-24 98.2
Msa0447180 MtrunA17_Chr7g0229101 60.000 70 28 0 54 123 4 73 2.39e-24 98.6
Msa0447180 MtrunA17_Chr4g0058991 43.925 107 59 1 19 125 204 309 3.11e-24 102
Msa0447180 MtrunA17_Chr6g0480581 47.525 101 52 1 24 124 4 103 4.59e-24 98.6
Msa0447180 MtrunA17_Chr4g0042501 40.336 119 70 1 9 127 90 207 5.25e-23 99.0
Msa0447180 MtrunA17_Chr1g0157731 45.283 106 57 1 21 126 88 192 6.15e-23 100
Msa0447180 MtrunA17_Chr6g0460661 40.541 111 63 2 16 125 8 116 1.03e-22 92.8
Msa0447180 MtrunA17_Chr5g0425591 50.000 82 40 1 23 103 10 91 1.64e-22 90.1
Msa0447180 MtrunA17_Chr6g0460671 41.739 115 65 2 12 125 86 199 3.54e-22 95.9
Msa0447180 MtrunA17_Chr7g0228531 44.037 109 58 3 24 132 220 325 4.70e-22 96.3
Msa0447180 MtrunA17_Chr6g0453751 47.253 91 39 2 22 103 20 110 7.65e-22 89.7
Msa0447180 MtrunA17_Chr5g0397841 46.939 98 51 1 22 119 108 204 1.12e-21 95.5
Msa0447180 MtrunA17_Chr1g0177901 36.296 135 84 2 35 169 5 137 1.67e-21 90.9
Msa0447180 MtrunA17_Chr7g0228401 46.154 104 49 3 35 138 290 386 4.44e-21 94.0
Msa0447180 MtrunA17_Chr3g0093811 49.398 83 39 1 47 126 4 86 9.10e-21 90.5
Msa0447180 MtrunA17_Chr3g0125801 44.762 105 55 2 24 127 16 118 2.94e-19 86.7
Msa0447180 MtrunA17_Chr7g0228481 40.708 113 63 3 24 134 220 330 7.71e-19 87.0
Msa0447180 MtrunA17_Chr7g0254261 42.727 110 61 2 17 125 81 189 4.31e-18 84.0
Msa0447180 MtrunA17_Chr7g0233061 37.692 130 65 5 5 129 167 285 6.87e-18 83.6
Msa0447180 MtrunA17_Chr5g0416341 36.296 135 78 3 27 154 29 162 1.03e-17 84.0
Msa0447180 MtrunA17_Chr7g0238651 38.298 94 56 1 27 118 10 103 4.62e-16 78.2
Msa0447180 MtrunA17_Chr1g0193901 51.515 66 30 2 14 78 4 68 9.73e-16 72.4
Msa0447180 MtrunA17_Chr1g0193891 51.515 66 30 2 14 78 4 68 9.73e-16 72.4
Msa0447180 MtrunA17_Chr1g0193871 51.515 66 30 2 14 78 4 68 9.73e-16 72.4
Msa0447180 MtrunA17_Chr1g0193881 51.515 66 30 2 14 78 4 68 9.73e-16 72.4
Msa0447180 MtrunA17_Chr8g0362231 37.624 101 62 1 27 127 25 124 2.20e-15 76.6
Msa0447180 MtrunA17_Chr5g0434871 58.140 43 18 0 84 126 2 44 5.57e-13 63.5
Msa0447180 MtrunA17_Chr3g0104491 39.474 76 41 2 64 135 2 76 2.99e-12 66.2
Msa0447180 MtrunA17_Chr2g0322831 58.537 41 17 0 80 120 34 74 8.47e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0447180 AT3G08500.1 45.179 363 154 9 1 339 1 342 8.90e-81 249
Msa0447180 AT5G12870.1 78.400 125 25 1 3 127 1 123 1.54e-69 219
Msa0447180 AT4G01680.3 77.982 109 24 0 19 127 9 117 3.16e-59 191
Msa0447180 AT4G01680.1 77.982 109 24 0 19 127 9 117 1.43e-58 192
Msa0447180 AT5G26660.1 53.226 186 71 2 19 204 9 178 1.53e-58 192
Msa0447180 AT1G09540.1 76.147 109 26 0 19 127 9 117 4.10e-58 192
Msa0447180 AT3G13890.2 74.312 109 28 0 18 126 8 116 4.78e-58 191
Msa0447180 AT1G57560.2 75.000 108 27 0 19 126 9 116 4.55e-57 186
Msa0447180 AT1G57560.1 75.000 108 27 0 19 126 9 116 4.84e-57 187
Msa0447180 AT1G63910.1 68.182 110 35 0 18 127 8 117 2.18e-55 185
Msa0447180 AT3G13890.1 68.644 118 28 1 18 126 8 125 4.88e-55 184
Msa0447180 AT4G01680.2 70.248 121 24 1 19 127 9 129 5.18e-55 183
Msa0447180 AT3G12720.1 68.519 108 34 0 19 126 19 126 3.82e-52 175
Msa0447180 AT4G05100.1 64.103 117 42 0 10 126 1 117 7.22e-50 169
Msa0447180 AT4G21440.1 67.593 108 35 0 19 126 9 116 2.02e-48 166
Msa0447180 AT2G16720.1 66.667 108 36 0 19 126 9 116 2.15e-48 164
Msa0447180 AT5G54230.1 67.619 105 34 0 22 126 12 116 8.17e-48 164
Msa0447180 AT3G48920.1 45.263 190 92 2 18 195 14 203 8.29e-48 162
Msa0447180 AT1G22640.1 51.389 144 66 1 19 162 9 148 1.29e-47 161
Msa0447180 AT4G34990.1 59.350 123 49 1 24 145 14 136 1.41e-47 162
Msa0447180 AT4G38620.1 53.147 143 64 1 19 158 9 151 2.02e-47 162
Msa0447180 AT5G10280.1 65.421 107 37 0 20 126 10 116 6.69e-47 162
Msa0447180 AT3G01140.2 64.220 109 39 0 18 126 8 116 8.54e-47 162
Msa0447180 AT4G28110.1 63.303 109 40 0 18 126 8 116 1.11e-46 160
Msa0447180 AT5G15310.4 47.701 174 85 3 18 189 8 177 1.81e-46 158
Msa0447180 AT4G12350.1 57.812 128 53 1 18 144 8 135 2.60e-46 159
Msa0447180 AT3G01140.1 64.220 109 39 0 18 126 51 159 2.85e-46 162
Msa0447180 AT4G09460.1 62.037 108 41 0 19 126 9 116 2.97e-46 157
Msa0447180 AT5G65230.1 62.385 109 41 0 18 126 8 116 3.23e-46 159
Msa0447180 AT5G52600.1 55.385 130 57 1 19 147 9 138 3.80e-46 156
Msa0447180 AT5G14750.1 47.126 174 75 4 3 165 1 168 4.03e-46 156
Msa0447180 AT5G60890.1 61.321 106 41 0 22 127 12 117 4.03e-46 159
Msa0447180 AT5G15310.1 52.703 148 65 2 18 164 8 151 4.20e-46 159
Msa0447180 AT5G15310.2 52.703 148 65 2 18 164 8 151 4.21e-46 159
Msa0447180 AT3G61250.1 64.220 109 39 0 18 126 8 116 5.03e-46 159
Msa0447180 AT2G31180.1 62.281 114 43 0 19 132 9 122 5.25e-46 157
Msa0447180 AT1G74430.1 65.714 105 36 0 22 126 12 116 2.25e-45 156
Msa0447180 AT5G56110.1 63.889 108 39 0 19 126 9 116 2.39e-45 157
Msa0447180 AT5G40330.1 40.191 209 114 4 23 222 13 219 2.97e-45 154
Msa0447180 AT3G02940.2 59.633 109 44 0 18 126 8 116 3.03e-45 157
Msa0447180 AT4G25560.1 67.961 103 33 0 23 125 11 113 4.15e-45 155
Msa0447180 AT1G34670.1 64.762 105 37 0 22 126 12 116 5.01e-45 158
Msa0447180 AT3G02940.1 59.633 109 44 0 18 126 8 116 6.40e-45 156
Msa0447180 AT3G02940.3 59.633 109 44 0 18 126 8 116 6.40e-45 156
Msa0447180 AT5G52260.1 59.375 128 45 1 19 139 9 136 1.70e-44 154
Msa0447180 AT3G23250.1 45.402 174 92 2 19 192 9 179 2.00e-44 154
Msa0447180 AT1G56160.1 46.243 173 85 1 17 189 9 173 2.21e-44 154
Msa0447180 AT5G35550.1 42.718 206 107 4 10 214 1 196 4.66e-44 152
Msa0447180 AT1G66230.1 60.909 110 43 0 18 127 8 117 6.20e-44 152
Msa0447180 AT4G22680.1 53.571 140 62 2 18 156 8 145 7.37e-44 152
Msa0447180 AT1G35515.1 41.379 174 92 3 19 187 9 177 9.15e-44 150
Msa0447180 AT5G16770.4 60.952 105 41 0 22 126 12 116 1.28e-43 153
Msa0447180 AT5G16770.3 60.952 105 41 0 22 126 12 116 1.28e-43 153
Msa0447180 AT1G06180.1 63.889 108 39 0 19 126 9 116 2.14e-43 150
Msa0447180 AT5G61420.2 61.905 105 40 0 22 126 12 116 2.84e-43 153
Msa0447180 AT5G16770.1 60.952 105 41 0 22 126 12 116 2.95e-43 152
Msa0447180 AT5G16770.2 60.952 105 41 0 22 126 12 116 2.95e-43 152
Msa0447180 AT5G07700.1 61.905 105 40 0 22 126 12 116 3.26e-43 152
Msa0447180 AT5G07700.2 61.905 105 40 0 22 126 12 116 3.26e-43 152
Msa0447180 AT2G47460.1 61.111 108 42 0 19 126 9 116 3.30e-43 153
Msa0447180 AT5G16600.1 60.000 110 44 0 18 127 8 117 5.22e-43 151
Msa0447180 AT1G79180.1 46.914 162 83 2 18 176 10 171 5.67e-43 150
Msa0447180 AT1G18570.1 61.905 105 40 0 22 126 13 117 7.67e-43 152
Msa0447180 AT5G07690.1 61.905 105 40 0 22 126 12 116 1.14e-42 151
Msa0447180 AT1G16490.1 57.018 114 49 0 18 131 10 123 2.02e-42 148
Msa0447180 AT5G49330.1 61.111 108 42 0 19 126 9 116 2.30e-42 150
Msa0447180 AT3G62610.1 59.259 108 44 0 19 126 9 116 2.51e-42 150
Msa0447180 AT3G27920.1 51.220 123 60 0 21 143 13 135 3.60e-42 146
Msa0447180 AT3G27810.1 49.206 126 64 0 19 144 17 142 5.10e-42 146
Msa0447180 AT3G13540.1 46.575 146 77 1 18 162 19 164 6.00e-42 146
Msa0447180 AT4G17785.2 59.048 105 43 0 22 126 13 117 1.73e-41 148
Msa0447180 AT4G17785.1 59.048 105 43 0 22 126 13 117 1.98e-41 148
Msa0447180 AT5G14340.1 51.007 149 70 2 18 165 20 166 2.00e-41 146
Msa0447180 AT5G62320.1 41.848 184 95 3 10 185 1 180 2.56e-41 145
Msa0447180 AT3G28470.1 62.136 103 39 0 18 120 8 110 3.71e-41 146
Msa0447180 AT3G01530.1 54.054 111 51 0 22 132 25 135 3.97e-41 143
Msa0447180 AT5G40350.1 49.180 122 62 0 20 141 15 136 6.23e-41 143
Msa0447180 AT3G24310.1 56.034 116 51 0 23 138 19 134 8.19e-41 144
Msa0447180 AT4G13480.1 56.757 111 48 0 23 133 7 117 8.49e-41 144
Msa0447180 AT3G30210.1 58.333 108 45 0 23 130 28 135 1.21e-40 144
Msa0447180 AT3G12820.1 58.716 109 45 0 18 126 10 118 1.24e-40 143
Msa0447180 AT1G68320.1 40.571 175 89 2 21 195 18 177 2.47e-40 143
Msa0447180 AT3G47600.1 51.128 133 64 1 18 149 8 140 2.64e-40 144
Msa0447180 AT2G26960.1 54.386 114 52 0 11 124 9 122 4.12e-40 146
Msa0447180 AT1G08810.1 56.881 109 47 0 18 126 8 116 4.41e-40 142
Msa0447180 AT1G74080.1 60.000 105 42 0 22 126 12 116 4.56e-40 144
Msa0447180 AT5G26660.2 50.000 156 62 2 49 204 8 147 5.75e-40 143
Msa0447180 AT1G18710.1 58.095 105 44 0 22 126 12 116 5.86e-40 142
Msa0447180 AT5G55020.1 57.547 106 45 0 22 127 26 131 1.29e-39 146
Msa0447180 AT4G26930.1 57.282 103 44 0 22 124 19 121 1.94e-39 144
Msa0447180 AT2G32460.1 54.206 107 49 0 22 128 18 124 2.76e-39 145
Msa0447180 AT1G74650.1 57.407 108 46 0 19 126 9 116 2.87e-39 142
Msa0447180 AT2G32460.2 54.206 107 49 0 22 128 6 112 3.03e-39 145
Msa0447180 AT3G28910.1 54.310 116 53 0 18 133 8 123 3.16e-39 141
Msa0447180 AT5G62470.2 54.386 114 52 0 19 132 9 122 5.29e-39 141
Msa0447180 AT3G11440.2 49.593 123 62 0 6 128 25 147 7.11e-39 144
Msa0447180 AT1G48000.1 57.009 107 46 0 21 127 31 137 1.45e-38 137
Msa0447180 AT2G47190.1 36.179 246 130 6 20 254 18 247 1.49e-38 138
Msa0447180 AT3G49690.1 56.364 110 47 1 18 126 8 117 1.52e-38 139
Msa0447180 AT5G06100.1 55.140 107 48 0 22 128 32 138 1.56e-38 142
Msa0447180 AT3G11440.3 49.593 123 62 0 6 128 25 147 2.85e-38 143
Msa0447180 AT3G11440.4 49.593 123 62 0 6 128 25 147 2.85e-38 143
Msa0447180 AT3G11440.1 49.593 123 62 0 6 128 25 147 2.85e-38 143
Msa0447180 AT5G06100.5 55.140 107 48 0 22 128 32 138 4.86e-38 142
Msa0447180 AT5G06100.2 55.140 107 48 0 22 128 32 138 4.86e-38 142
Msa0447180 AT5G06100.3 55.140 107 48 0 22 128 32 138 4.86e-38 142
Msa0447180 AT5G06100.4 55.140 107 48 0 22 128 32 138 4.86e-38 142
Msa0447180 AT5G23000.1 55.455 110 48 1 18 126 8 117 9.16e-38 137
Msa0447180 AT5G65790.1 55.455 110 48 1 18 126 8 117 9.92e-38 139
Msa0447180 AT1G25340.1 50.820 122 60 0 12 133 8 129 1.17e-37 136
Msa0447180 AT5G57620.1 55.455 110 48 1 18 126 8 117 1.61e-37 137
Msa0447180 AT1G79180.2 43.713 167 59 2 18 149 10 176 2.41e-37 136
Msa0447180 AT5G62470.1 54.386 114 51 1 19 132 9 121 3.38e-37 137
Msa0447180 AT3G06490.1 55.172 116 52 0 12 127 9 124 3.23e-36 133
Msa0447180 AT4G37780.1 37.264 212 118 4 18 218 8 215 3.38e-36 133
Msa0447180 AT3G53200.1 53.211 109 51 0 22 130 9 117 1.33e-35 129
Msa0447180 AT5G59780.3 48.305 118 61 0 19 136 5 122 1.34e-35 129
Msa0447180 AT2G36890.1 52.727 110 51 1 18 126 8 117 1.47e-35 131
Msa0447180 AT3G46130.1 50.877 114 56 0 23 136 10 123 2.02e-35 129
Msa0447180 AT2G36890.2 48.819 127 63 2 1 126 33 158 2.70e-35 131
Msa0447180 AT5G35550.2 41.899 179 93 2 9 187 12 179 1.54e-33 125
Msa0447180 AT1G66370.1 47.015 134 61 2 22 148 8 138 2.67e-33 124
Msa0447180 AT5G49620.1 53.774 106 49 0 22 127 26 131 6.91e-33 124
Msa0447180 AT1G25340.2 48.361 122 58 1 12 133 8 124 8.26e-33 123
Msa0447180 AT1G25340.3 48.361 122 58 1 12 133 8 124 1.83e-32 123
Msa0447180 AT5G14750.3 50.420 119 46 3 58 165 18 134 4.42e-32 118
Msa0447180 AT2G26950.1 47.706 109 56 1 19 127 13 120 2.66e-31 121
Msa0447180 AT3G47600.2 49.573 117 54 2 34 149 22 134 3.21e-31 120
Msa0447180 AT1G66380.1 54.808 104 47 0 22 125 8 111 6.76e-31 114
Msa0447180 AT3G27810.2 53.333 90 42 0 55 144 4 93 2.09e-30 114
Msa0447180 AT3G12820.2 72.464 69 19 0 58 126 2 70 2.13e-30 114
Msa0447180 AT1G56650.1 49.180 122 56 1 22 137 8 129 3.48e-30 115
Msa0447180 AT3G60460.1 48.696 115 58 1 18 131 7 121 4.75e-30 116
Msa0447180 AT1G66390.1 56.190 105 44 2 22 125 8 111 1.92e-29 114
Msa0447180 AT5G40350.2 52.809 89 42 0 53 141 3 91 2.73e-29 111
Msa0447180 AT5G49620.2 47.500 120 49 1 22 127 26 145 2.96e-29 115
Msa0447180 AT3G46130.3 54.762 84 38 0 53 136 8 91 5.19e-29 112
Msa0447180 AT5G59780.2 56.098 82 36 0 55 136 20 101 8.54e-29 111
Msa0447180 AT3G46130.4 56.098 82 36 0 55 136 20 101 1.24e-28 111
Msa0447180 AT5G40360.1 45.833 120 62 3 7 126 142 258 2.06e-28 113
Msa0447180 AT3G53200.2 59.211 76 31 0 55 130 9 84 3.06e-27 106
Msa0447180 AT2G39880.1 52.212 113 52 2 13 125 40 150 4.24e-27 110
Msa0447180 AT4G18770.1 44.628 121 65 2 19 138 212 331 4.46e-27 110
Msa0447180 AT3G27785.1 47.222 108 54 2 19 125 184 289 1.75e-26 109
Msa0447180 AT5G67300.1 50.000 102 50 1 24 125 6 106 2.52e-26 106
Msa0447180 AT3G55730.1 44.595 148 77 3 19 166 52 194 1.09e-25 106
Msa0447180 AT4G37260.1 51.961 102 48 1 24 125 13 113 2.60e-25 104
Msa0447180 AT5G58850.1 39.200 125 75 1 22 146 103 226 3.27e-25 105
Msa0447180 AT3G50060.1 44.715 123 66 2 24 146 6 126 3.71e-25 103
Msa0447180 AT3G09230.1 52.427 103 48 1 24 126 55 156 4.86e-25 104
Msa0447180 AT5G11050.1 40.164 122 71 2 24 144 105 225 6.08e-25 104
Msa0447180 AT5G02320.3 46.729 107 56 1 21 127 64 169 1.35e-24 104
Msa0447180 AT5G02320.1 46.729 107 56 1 21 127 124 229 1.38e-24 104
Msa0447180 AT5G02320.2 46.729 107 56 1 21 127 124 229 1.38e-24 104
Msa0447180 AT1G69560.1 39.516 124 72 2 5 127 88 209 3.45e-24 101
Msa0447180 AT3G09370.1 49.038 104 52 1 22 125 128 230 3.76e-24 103
Msa0447180 AT3G09370.2 49.038 104 52 1 22 125 133 235 4.04e-24 103
Msa0447180 AT1G69560.2 39.516 124 72 2 5 127 104 225 4.43e-24 101
Msa0447180 AT3G09370.3 49.038 104 52 1 22 125 141 243 5.68e-24 102
Msa0447180 AT5G11510.3 47.170 106 55 1 21 126 78 182 1.02e-23 102
Msa0447180 AT5G11510.1 47.170 106 55 1 21 126 78 182 1.02e-23 102
Msa0447180 AT5G11510.4 47.170 106 55 1 21 126 78 182 1.02e-23 102
Msa0447180 AT2G25230.1 40.496 121 69 2 17 137 19 136 1.08e-23 97.8
Msa0447180 AT5G11510.5 47.170 106 55 1 21 126 78 182 1.11e-23 102
Msa0447180 AT5G11510.2 47.170 106 55 1 21 126 78 182 1.28e-23 102
Msa0447180 AT1G22640.3 69.492 59 18 0 68 126 1 59 1.90e-23 96.3
Msa0447180 AT3G23250.2 43.200 125 68 2 68 192 1 122 3.85e-23 96.3
Msa0447180 AT2G23290.1 49.020 102 51 1 24 125 13 113 4.35e-23 97.8
Msa0447180 AT1G66380.3 61.111 72 28 0 54 125 7 78 6.39e-23 92.0
Msa0447180 AT1G17950.1 47.059 102 53 1 24 125 5 105 9.36e-23 95.9
Msa0447180 AT5G14750.4 45.872 109 46 3 68 165 1 107 9.99e-23 92.8
Msa0447180 AT5G14750.2 45.872 109 46 3 68 165 1 107 9.99e-23 92.8
Msa0447180 AT1G26780.2 43.925 107 57 2 22 127 96 200 4.53e-22 95.9
Msa0447180 AT1G26780.1 43.925 107 57 2 22 127 96 200 4.72e-22 94.4
Msa0447180 AT4G33450.1 36.090 133 84 1 7 139 2 133 1.81e-21 92.4
Msa0447180 AT4G32730.1 43.396 106 59 1 21 126 84 188 2.32e-21 95.5
Msa0447180 AT4G32730.5 43.396 106 59 1 21 126 84 188 2.47e-21 95.9
Msa0447180 AT4G32730.4 43.396 106 59 1 21 126 84 188 2.47e-21 95.9
Msa0447180 AT4G32730.3 43.396 106 59 1 21 126 84 188 2.47e-21 95.9
Msa0447180 AT4G32730.2 43.396 106 59 1 21 126 84 188 2.47e-21 95.9
Msa0447180 AT5G17800.1 35.036 137 87 2 12 147 81 216 2.54e-20 90.5
Msa0447180 AT1G73410.1 46.154 104 55 1 24 127 6 108 3.10e-20 88.6
Msa0447180 AT2G02820.3 41.584 101 58 1 27 127 33 132 4.16e-20 90.1
Msa0447180 AT2G02820.1 41.584 101 58 1 27 127 33 132 4.84e-20 90.9
Msa0447180 AT1G71030.2 56.061 66 29 0 61 126 5 70 5.68e-20 86.3
Msa0447180 AT2G02820.2 41.584 101 58 1 27 127 33 132 6.54e-20 90.9
Msa0447180 AT1G71030.1 56.061 66 29 0 61 126 19 84 7.55e-20 86.7
Msa0447180 AT1G73410.2 46.154 104 55 1 24 127 6 108 8.37e-20 86.7
Msa0447180 AT3G29020.1 33.846 130 85 1 24 153 65 193 8.39e-20 87.4
Msa0447180 AT3G29020.2 33.846 130 85 1 24 153 67 195 1.69e-19 87.8
Msa0447180 AT1G18960.1 42.857 105 53 4 24 126 10 109 2.01e-19 87.8
Msa0447180 AT5G40430.1 36.937 111 67 3 17 127 47 154 2.80e-19 86.3
Msa0447180 AT4G00540.2 41.284 109 60 2 22 127 101 208 1.44e-18 86.3
Msa0447180 AT4G00540.1 41.284 109 60 2 22 127 99 206 2.19e-18 86.3
Msa0447180 AT1G66380.2 50.633 79 39 0 22 100 8 86 6.39e-18 78.6
Msa0447180 AT1G14350.2 40.594 101 59 1 27 127 28 127 1.17e-17 84.0
Msa0447180 AT1G14350.1 40.594 101 59 1 27 127 28 127 1.17e-17 84.0
Msa0447180 AT5G39700.1 33.884 121 79 1 19 139 51 170 8.83e-15 72.4
Msa0447180 AT2G37630.1 31.783 129 85 2 27 152 7 135 9.93e-15 74.7
Msa0447180 AT4G25560.2 71.111 45 13 0 81 125 3 47 2.06e-14 72.0
Msa0447180 AT5G59780.1 47.368 57 30 0 80 136 1 57 4.29e-14 69.7
Msa0447180 AT3G46130.2 48.214 56 29 0 81 136 2 57 9.03e-14 69.3
Msa0447180 AT1G14350.3 46.774 62 33 0 66 127 23 84 8.50e-13 69.3
Msa0447180 AT1G14350.4 46.774 62 33 0 66 127 23 84 8.50e-13 69.3
Msa0447180 AT3G28910.2 55.319 47 21 0 87 133 1 47 1.99e-11 63.9
Msa0447180 AT1G74650.3 62.500 40 15 0 87 126 1 40 2.81e-11 63.5

Find 142 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTCTTTGTTTATATTT+TGG 0.102827 3_3:-24620760 None:intergenic
TCACATTATAATCACCAATT+AGG 0.155481 3_3:-24619904 None:intergenic
ACTTGTGTTAAACAACTATT+TGG 0.180604 3_3:-24619743 None:intergenic
ATTAGTTCTTGTTCATTAAT+TGG 0.192848 3_3:-24619569 None:intergenic
TGATGATCATTATGGGATTT+TGG 0.196511 3_3:+24619799 Msa0447180:CDS
TAGAAAGTCTAAGAGAAAAT+TGG 0.237860 3_3:-24620595 None:intergenic
ACATTTGTGTATATGCAAAT+TGG 0.244524 3_3:-24620662 None:intergenic
ATTCATTTCCACTCCATTCT+TGG 0.254594 3_3:+24617768 Msa0447180:CDS
GGCAATATGGTTGATGATAT+TGG 0.254643 3_3:+24619767 Msa0447180:CDS
CTTCATAGTGATGATCATTA+TGG 0.268893 3_3:+24619791 Msa0447180:CDS
CACATTATAATCACCAATTA+GGG 0.286005 3_3:-24619903 None:intergenic
CCTCTGATCTCTCTCTAAAT+TGG 0.292372 3_3:+24620153 Msa0447180:three_prime_UTR
TAAAATACCTTATGGAATCT+TGG 0.317280 3_3:+24620708 Msa0447180:three_prime_UTR
TAGATTAATCTAATGGCTAT+AGG 0.317469 3_3:+24620393 Msa0447180:three_prime_UTR
ATTTCTCTGTTTGAATTTAA+CGG 0.322359 3_3:+24620237 Msa0447180:three_prime_UTR
GCAATATGGTTGATGATATT+GGG 0.322671 3_3:+24619768 Msa0447180:CDS
GAAATCAAGAGGAGGAAAAT+AGG 0.323976 3_3:-24620080 None:intergenic
AACTCCAATGAGGACTTGTT+TGG 0.324640 3_3:+24619983 Msa0447180:CDS
TATTATTGAAGTGGTTGTTA+TGG 0.328348 3_3:-24619931 None:intergenic
TTGTTAGACAACAAGGAAAA+TGG 0.336500 3_3:-24619683 None:intergenic
CAGGTAGACGTGCTGCAATT+TGG 0.342428 3_3:-24619391 None:intergenic
AGGTAGACGTGCTGCAATTT+GGG 0.345262 3_3:-24619390 None:intergenic
TTTAACACAAGTTGGCAATA+TGG 0.356129 3_3:+24619754 Msa0447180:CDS
TATCTACCACAACATACAAT+TGG 0.357750 3_3:-24620854 None:intergenic
AATGAGGACTTGTTTGGGTT+TGG 0.361066 3_3:+24619989 Msa0447180:CDS
TCCACTCCATTCTTGGCAAC+AGG 0.366668 3_3:+24617775 Msa0447180:CDS
TTTCTCCTTGAATATCTTTG+TGG 0.371969 3_3:+24620319 Msa0447180:three_prime_UTR
TGGAGTAGAGTTGTTGTTGT+TGG 0.373139 3_3:-24619474 None:intergenic
AAGAATGGGAGAATGGGATT+TGG 0.378844 3_3:+24620036 Msa0447180:CDS
GAAGATAAGAGTGCCCTAAT+TGG 0.381814 3_3:+24619890 Msa0447180:CDS
CTACAGCCGGCTGCACCTTA+AGG 0.383201 3_3:-24620191 None:intergenic
AAAATTCTTTATTTCATTGT+CGG 0.387116 3_3:-24619420 None:intergenic
CAGAGGGGACAAGGGGTGAT+TGG 0.388262 3_3:-24620136 None:intergenic
TGCATTCTTTGTGCCCTTGT+GGG 0.388916 3_3:+24620941 Msa0447180:three_prime_UTR
TTGTTTGGGTTTGGAAGTCA+TGG 0.392597 3_3:+24619998 Msa0447180:CDS
GTGAAGATTAAGAGAAATCA+AGG 0.400765 3_3:-24620564 None:intergenic
GATCTTTGAGAAAGCTATAT+AGG 0.402970 3_3:-24617400 None:intergenic
ACTCCAATGAGGACTTGTTT+GGG 0.403680 3_3:+24619984 Msa0447180:CDS
ACAAGGAAAATGGATCAAAT+TGG 0.406250 3_3:-24619673 None:intergenic
AAAATACCTTATGGAATCTT+GGG 0.410847 3_3:+24620709 Msa0447180:three_prime_UTR
TTCATAGTGATGATCATTAT+GGG 0.411437 3_3:+24619792 Msa0447180:CDS
TCCGAAGTGTCACTGTTGTT+TGG 0.430031 3_3:-24619500 None:intergenic
AAAACTTAAGAATGGGAGAA+TGG 0.437647 3_3:+24620029 Msa0447180:CDS
AATTTAACGGTACGTACAAC+CGG 0.438874 3_3:+24620250 Msa0447180:three_prime_UTR
CAAAGATATTCAAGGAGAAA+AGG 0.439458 3_3:-24620316 None:intergenic
TAACTAAAGGACAAGGTTGT+TGG 0.440286 3_3:+24617622 Msa0447180:CDS
GCAAGCTAAGGAAAGGGTTA+TGG 0.448835 3_3:+24617562 Msa0447180:CDS
AATGTACCTGTTGCCAAGAA+TGG 0.449357 3_3:-24617781 None:intergenic
AAACTTAAGAATGGGAGAAT+GGG 0.456783 3_3:+24620030 Msa0447180:CDS
TAACTAAAGACAAGAAAGAA+TGG 0.462003 3_3:-24620735 None:intergenic
AAACCCAAACAAGTCCTCAT+TGG 0.462806 3_3:-24619987 None:intergenic
CTCTCTCTCTAATGCAAATG+AGG 0.464940 3_3:+24617493 Msa0447180:exon
GAGGAAACCTGATTTGATCA+TGG 0.466267 3_3:+24617512 Msa0447180:CDS
AATAGTTGTTTAACACAAGT+TGG 0.469190 3_3:+24619746 Msa0447180:CDS
GTGTATACATAGTCTTGCTT+CGG 0.472005 3_3:+24620911 Msa0447180:three_prime_UTR
GTAAAAGTTGCCGTCTTCGT+TGG 0.474947 3_3:+24617682 Msa0447180:CDS
ACCAACTTCTCATCTTCCTC+AGG 0.478429 3_3:-24617588 None:intergenic
TCTTATGAAGAAGCACTTTG+AGG 0.481621 3_3:-24617457 None:intergenic
GAGAGAGATCAGAGGGGACA+AGG 0.483920 3_3:-24620145 None:intergenic
GAAAATGGATCAAATTGGTC+AGG 0.485864 3_3:-24619668 None:intergenic
AAGGTGACTAAAATACCTTA+TGG 0.487741 3_3:+24620700 Msa0447180:three_prime_UTR
GATTTCCACAAAGATATTCA+AGG 0.489134 3_3:-24620324 None:intergenic
ATACTCTACAACGAACCTTA+AGG 0.489425 3_3:+24620176 Msa0447180:three_prime_UTR
AATGGGAGAATGGGATTTGG+AGG 0.489531 3_3:+24620039 Msa0447180:CDS
TTCAAATGAAATGTGAATAG+TGG 0.489585 3_3:+24621035 Msa0447180:three_prime_UTR
AGAGATAGAAAGACTTTGAA+AGG 0.490896 3_3:-24620506 None:intergenic
CTTATGAAGAAGCACTTTGA+GGG 0.494366 3_3:-24617456 None:intergenic
ATCTACCACAACATACAATT+GGG 0.496280 3_3:-24620853 None:intergenic
TGAAGCAACTATTATTGAAG+TGG 0.497587 3_3:-24619940 None:intergenic
ACATATATGTATGAAACAAA+AGG 0.497809 3_3:-24620783 None:intergenic
AATGCGCCGCGCTTAAGATC+AGG 0.500512 3_3:-24617720 None:intergenic
CAAATTGCAGCACGTCTACC+TGG 0.503672 3_3:+24619392 Msa0447180:CDS
CAAAAGAGGCAAATAAATGT+AGG 0.507043 3_3:+24621072 Msa0447180:three_prime_UTR
GCAAGGAGAAAACTTAAGAA+TGG 0.509485 3_3:+24620021 Msa0447180:CDS
TTGCATTCTTTGTGCCCTTG+TGG 0.514381 3_3:+24620940 Msa0447180:three_prime_UTR
ATAGAGGACGAGATCCTCTT+CGG 0.515443 3_3:-24620477 None:intergenic
TCCAAGTCAATGTCTTCTCA+TGG 0.517738 3_3:+24620624 Msa0447180:three_prime_UTR
CAATTTAGAGAGAGATCAGA+GGG 0.520054 3_3:-24620152 None:intergenic
AGAGAGATCAGAGGGGACAA+GGG 0.521321 3_3:-24620144 None:intergenic
AGGAAACCTGATTTGATCAT+GGG 0.522620 3_3:+24617513 Msa0447180:CDS
AGTGACATTGCTAGGAATGC+TGG 0.522915 3_3:+24617645 Msa0447180:CDS
AACTAAAGACAAGAAAGAAT+GGG 0.525033 3_3:-24620734 None:intergenic
CTTTGAAAGGATTGTCATAG+AGG 0.528220 3_3:-24620493 None:intergenic
CAAGGAGAAAACTTAAGAAT+GGG 0.528613 3_3:+24620022 Msa0447180:CDS
ATGAGAAGACATTGACTTGG+AGG 0.530705 3_3:-24620622 None:intergenic
CAGGTATAGTTGTCTACAGC+CGG 0.536191 3_3:-24620204 None:intergenic
AACAAGAGCAAGCTAAGGAA+AGG 0.537747 3_3:+24617555 Msa0447180:CDS
GTGTCACTGTTGTTTGGAGA+TGG 0.538069 3_3:-24619494 None:intergenic
GTTGTTGGAGTGACATTGCT+AGG 0.540759 3_3:+24617637 Msa0447180:CDS
GTAAGATACATGATAACTAA+AGG 0.545634 3_3:+24617609 Msa0447180:CDS
ATGCTAATTCTACTCTCTAG+TGG 0.546253 3_3:-24619866 None:intergenic
CTAGGAATGCTGGTCTTCAA+AGG 0.546339 3_3:+24617655 Msa0447180:CDS
ACCTGAGGAAGATGAGAAGT+TGG 0.546873 3_3:+24617587 Msa0447180:CDS
TACAACCCAATTGTATGTTG+TGG 0.547350 3_3:+24620848 Msa0447180:three_prime_UTR
GAAAACTTGTCATGTCATAA+CGG 0.554873 3_3:-24619706 None:intergenic
AATGAAAAGACAATTAAACT+TGG 0.554955 3_3:-24620102 None:intergenic
ACAAGAGCAAGCTAAGGAAA+GGG 0.557354 3_3:+24617556 Msa0447180:CDS
ATTACACAAAGTGCTTTACA+AGG 0.561207 3_3:-24620967 None:intergenic
ATTCATCTTTACAATGCAGC+CGG 0.565105 3_3:-24620269 None:intergenic
ATGGGAGAATGGGATTTGGA+GGG 0.566954 3_3:+24620040 Msa0447180:CDS
ATGCATGTGCATGGATTGCA+TGG 0.568158 3_3:-24619633 None:intergenic
AGTAATTAATCCAACGAAGA+CGG 0.569053 3_3:-24617692 None:intergenic
TGGGTGCCCAAGATTCCATA+AGG 0.570181 3_3:-24620715 None:intergenic
GGGTTTGGAAGTCATGGGCA+AGG 0.571571 3_3:+24620004 Msa0447180:CDS
AACGAACCTTAAGGTGCAGC+CGG 0.573342 3_3:+24620185 Msa0447180:three_prime_UTR
AGAACTAATGACATTATGCA+TGG 0.576802 3_3:+24619583 Msa0447180:CDS
ACCATGAGAAGACATTGACT+TGG 0.579728 3_3:-24620625 None:intergenic
TTCAAGGAGAAAAGGAAGAG+TGG 0.581796 3_3:-24620308 None:intergenic
ATTTCATTGTCGGTACGACC+AGG 0.583529 3_3:-24619410 None:intergenic
AACCATGGTATGCATGTGCA+TGG 0.586474 3_3:-24619642 None:intergenic
TCCAAACAACAGTGACACTT+CGG 0.586789 3_3:+24619499 Msa0447180:CDS
ATGTCTTCAATCAATATGCA+AGG 0.592778 3_3:+24620681 Msa0447180:three_prime_UTR
ATGATGAGTTCTTCCTCTTG+TGG 0.593884 3_3:-24617747 None:intergenic
TCATTTAGAAATGTCAAAAG+AGG 0.599559 3_3:+24621058 Msa0447180:three_prime_UTR
TGTTTGGGTTTGGAAGTCAT+GGG 0.599593 3_3:+24619999 Msa0447180:CDS
GAGAGATCAGAGGGGACAAG+GGG 0.603225 3_3:-24620143 None:intergenic
TTAGCAGTGTTTATAGCACT+AGG 0.605228 3_3:+24621112 Msa0447180:three_prime_UTR
TAGGTAATACTATACACCGT+TGG 0.605293 3_3:+24620412 Msa0447180:three_prime_UTR
CAATTGTTGAATTAATCCAA+CGG 0.606586 3_3:-24620428 None:intergenic
CCAATTTAGAGAGAGATCAG+AGG 0.607332 3_3:-24620153 None:intergenic
AAAAGGTAGATGGGCCGAAG+AGG 0.611350 3_3:+24620463 Msa0447180:three_prime_UTR
AATTAAACTTGGAAATCAAG+AGG 0.628285 3_3:-24620091 None:intergenic
TGATGATGAAGATGATGATG+AGG 0.633819 3_3:-24619609 None:intergenic
ACATTAACAAGAGCAAGCTA+AGG 0.643937 3_3:+24617550 Msa0447180:CDS
CATTGTAAAGATGAATGTAG+AGG 0.647469 3_3:+24620276 Msa0447180:three_prime_UTR
GCTTTACAAGGAAACCCACA+AGG 0.648903 3_3:-24620955 None:intergenic
ATAACGGTTGTTAGACAACA+AGG 0.651413 3_3:-24619690 None:intergenic
AATGCTGGTCTTCAAAGGTG+TGG 0.659770 3_3:+24617660 Msa0447180:CDS
CTAATTCTACTCTCTAGTGG+AGG 0.660152 3_3:-24619863 None:intergenic
ATCCATGCACATGCATACCA+TGG 0.661611 3_3:+24619640 Msa0447180:CDS
TTGAGACCTGATCTTAAGCG+CGG 0.663731 3_3:+24617714 Msa0447180:CDS
TCACATTCAAAACTCCAATG+AGG 0.667734 3_3:+24619973 Msa0447180:CDS
AGGTTGGTACAAATAATCAA+AGG 0.668289 3_3:+24621002 Msa0447180:three_prime_UTR
ACCTGTTGCCAAGAATGGAG+TGG 0.673651 3_3:-24617776 None:intergenic
TAAACTTGGAAATCAAGAGG+AGG 0.676931 3_3:-24620088 None:intergenic
GAAAGGGTTATGGTCACCTG+AGG 0.691016 3_3:+24617572 Msa0447180:CDS
TACATGATAACTAAAGGACA+AGG 0.707656 3_3:+24617615 Msa0447180:CDS
AAATTGGTCAGGTAAAACCA+TGG 0.714456 3_3:-24619657 None:intergenic
GGAAGTAAGAGGGGTCATAG+CGG 0.749256 3_3:-24620351 None:intergenic
TTATAGCACTAGGAACAATG+TGG 0.760025 3_3:+24621122 Msa0447180:three_prime_UTR
CTTTACAAGGAAACCCACAA+GGG 0.761370 3_3:-24620954 None:intergenic
AATTTAGAGAGAGATCAGAG+GGG 0.794291 3_3:-24620151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTATATATTTTTTTTT+TGG + chr3_3:24618284-24618303 Msa0447180:intron 0.0%
!!! AAATATTTTAAAAAAATTAA+GGG - chr3_3:24618563-24618582 None:intergenic 0.0%
!!! AAAATATTTTAAAAAAATTA+AGG - chr3_3:24618564-24618583 None:intergenic 0.0%
!!! TTTTTTAAAATATTTTAATT+AGG + chr3_3:24618568-24618587 Msa0447180:intron 0.0%
!! TATATACATATAGAATAATT+TGG + chr3_3:24618695-24618714 Msa0447180:intron 10.0%
!!! CAAATTTTTTTTTTTTTTGA+GGG + chr3_3:24618762-24618781 Msa0447180:intron 10.0%
!! AAAGTGAATTAAAAAAATAT+AGG - chr3_3:24618987-24619006 None:intergenic 10.0%
!!! TATTTATTATTACATCTTTT+GGG - chr3_3:24619036-24619055 None:intergenic 10.0%
!!! TTATTTATTATTACATCTTT+TGG - chr3_3:24619037-24619056 None:intergenic 10.0%
!! GTTATTCAAAAAAACAATTA+TGG - chr3_3:24617916-24617935 None:intergenic 15.0%
!!! TATTTTTTTTTATCTCTCAA+AGG - chr3_3:24618086-24618105 None:intergenic 15.0%
!! TTATAACTTCTTGATTAATA+AGG - chr3_3:24618181-24618200 None:intergenic 15.0%
!!! ATATTCATTTTGTTATTGAA+TGG - chr3_3:24618215-24618234 None:intergenic 15.0%
!! TTGAAATTTGATTGAAAATA+GGG + chr3_3:24618732-24618751 Msa0447180:intron 15.0%
!! CCTCAAAAAAAAAAAAAATT+TGG - chr3_3:24618764-24618783 None:intergenic 15.0%
!!! CCAAATTTTTTTTTTTTTTG+AGG + chr3_3:24618761-24618780 Msa0447180:intron 15.0%
!! TCAAATAAAGTTGTTAAAAA+AGG + chr3_3:24619082-24619101 Msa0447180:intron 15.0%
!! ATTAAATTAAAAATCGTAAC+TGG - chr3_3:24619150-24619169 None:intergenic 15.0%
!! TCATGTTACAAAAAATTATA+AGG + chr3_3:24619179-24619198 Msa0447180:intron 15.0%
!! AAATTATAAGGAAATATTGA+AGG + chr3_3:24619191-24619210 Msa0447180:intron 15.0%
!! AATAATTTATAAGTTTAGAG+TGG + chr3_3:24619230-24619249 Msa0447180:intron 15.0%
!!! TAGTGTAACTTTTTTTTATA+TGG + chr3_3:24619293-24619312 Msa0447180:intron 15.0%
!!! AAAATTCTTTATTTCATTGT+CGG - chr3_3:24619423-24619442 None:intergenic 15.0%
!!! ACAATGAAATAAAGAATTTT+TGG + chr3_3:24619423-24619442 Msa0447180:CDS 15.0%
!!! AATTGAAATTTTGCTATAAA+AGG + chr3_3:24620446-24620465 Msa0447180:three_prime_UTR 15.0%
!!! TGAATTATGGTTTTAAATTG+TGG - chr3_3:24617953-24617972 None:intergenic 20.0%
!! TTTCAAAAAACAAATCTTGA+AGG + chr3_3:24618012-24618031 Msa0447180:intron 20.0%
!! TTCAAAAAACAAATCTTGAA+GGG + chr3_3:24618013-24618032 Msa0447180:intron 20.0%
!! TATCAATTTCAGTAAAACAA+TGG - chr3_3:24618123-24618142 None:intergenic 20.0%
!!! TTGCTTGAATACTTTTTTAT+TGG - chr3_3:24618266-24618285 None:intergenic 20.0%
!! ATAAATCTTAAGATCTTAGT+GGG - chr3_3:24618672-24618691 None:intergenic 20.0%
!! TATAAATCTTAAGATCTTAG+TGG - chr3_3:24618673-24618692 None:intergenic 20.0%
!! GTTGAAATTTGATTGAAAAT+AGG + chr3_3:24618731-24618750 Msa0447180:intron 20.0%
!!! TTTTTTTTTTTTTTGAGGGA+AGG + chr3_3:24618766-24618785 Msa0447180:intron 20.0%
!!! TTTTTTTTTTTTTGAGGGAA+GGG + chr3_3:24618767-24618786 Msa0447180:intron 20.0%
!! TCACTTTGATATTTATTTGA+TGG + chr3_3:24619000-24619019 Msa0447180:intron 20.0%
!! AAATGCTAATAATTGAAGAA+GGG - chr3_3:24619263-24619282 None:intergenic 20.0%
!!! TTAATAAGTGTAACCTATTT+TGG + chr3_3:24619316-24619335 Msa0447180:intron 20.0%
!! AAAGAAGAAAAATCCAAAAT+AGG - chr3_3:24619332-24619351 None:intergenic 20.0%
!!! ATTTTGGATTTTTCTTCTTT+CGG + chr3_3:24619332-24619351 Msa0447180:intron 20.0%
!! ACATCAAAAACATTATCTAT+TGG - chr3_3:24619530-24619549 None:intergenic 20.0%
!!! ATTAGTTCTTGTTCATTAAT+TGG - chr3_3:24619572-24619591 None:intergenic 20.0%
!! AATGAAAAGACAATTAAACT+TGG - chr3_3:24620105-24620124 None:intergenic 20.0%
!! ATTTCTCTGTTTGAATTTAA+CGG + chr3_3:24620237-24620256 Msa0447180:three_prime_UTR 20.0%
!!! ACTTGTCTTTGTTTATATTT+TGG - chr3_3:24620763-24620782 None:intergenic 20.0%
!! ACATATATGTATGAAACAAA+AGG - chr3_3:24620786-24620805 None:intergenic 20.0%
!!! GTTTGTTATATTTTAGTGTT+AGG + chr3_3:24621153-24621172 Msa0447180:three_prime_UTR 20.0%
! GTAAGATACATGATAACTAA+AGG + chr3_3:24617609-24617628 Msa0447180:CDS 25.0%
!! TATTTTCATATTTGAACCCT+AGG + chr3_3:24617846-24617865 Msa0447180:intron 25.0%
! TCAAAAAACAAATCTTGAAG+GGG + chr3_3:24618014-24618033 Msa0447180:intron 25.0%
!!! TTCTCATTTTTTTGAGAGAA+GGG - chr3_3:24618427-24618446 None:intergenic 25.0%
!! CAGATTCTAAACCTTTTAAA+GGG + chr3_3:24618530-24618549 Msa0447180:intron 25.0%
! ATGTAAGTTAAACTTTCATC+TGG - chr3_3:24618604-24618623 None:intergenic 25.0%
! TAAATCTTAAGATCTTAGTG+GGG - chr3_3:24618671-24618690 None:intergenic 25.0%
! ATTTGATTGAAAATAGGGTT+TGG + chr3_3:24618737-24618756 Msa0447180:intron 25.0%
! GAAATGCTAATAATTGAAGA+AGG - chr3_3:24619264-24619283 None:intergenic 25.0%
! TTACTATAAACAATCTCAGA+TGG + chr3_3:24619366-24619385 Msa0447180:intron 25.0%
! ACTTGTGTTAAACAACTATT+TGG - chr3_3:24619746-24619765 None:intergenic 25.0%
! AATAGTTGTTTAACACAAGT+TGG + chr3_3:24619746-24619765 Msa0447180:CDS 25.0%
! TTCATAGTGATGATCATTAT+GGG + chr3_3:24619792-24619811 Msa0447180:CDS 25.0%
!!! ATTTTGGAGGCTAATAAAAT+GGG + chr3_3:24619815-24619834 Msa0447180:CDS 25.0%
! CACATTATAATCACCAATTA+GGG - chr3_3:24619906-24619925 None:intergenic 25.0%
! TCACATTATAATCACCAATT+AGG - chr3_3:24619907-24619926 None:intergenic 25.0%
! TATTATTGAAGTGGTTGTTA+TGG - chr3_3:24619934-24619953 None:intergenic 25.0%
! AATTAAACTTGGAAATCAAG+AGG - chr3_3:24620094-24620113 None:intergenic 25.0%
!! CAGCTTTTAGATTAATCTAA+TGG + chr3_3:24620386-24620405 Msa0447180:three_prime_UTR 25.0%
! TAGATTAATCTAATGGCTAT+AGG + chr3_3:24620393-24620412 Msa0447180:three_prime_UTR 25.0%
! CAATTGTTGAATTAATCCAA+CGG - chr3_3:24620431-24620450 None:intergenic 25.0%
!!! ATTTTGCTATAAAAGGTAGA+TGG + chr3_3:24620453-24620472 Msa0447180:three_prime_UTR 25.0%
!!! TTTTGCTATAAAAGGTAGAT+GGG + chr3_3:24620454-24620473 Msa0447180:three_prime_UTR 25.0%
! TAGAAAGTCTAAGAGAAAAT+TGG - chr3_3:24620598-24620617 None:intergenic 25.0%
! ACATTTGTGTATATGCAAAT+TGG - chr3_3:24620665-24620684 None:intergenic 25.0%
! TAAAATACCTTATGGAATCT+TGG + chr3_3:24620708-24620727 Msa0447180:three_prime_UTR 25.0%
! AAAATACCTTATGGAATCTT+GGG + chr3_3:24620709-24620728 Msa0447180:three_prime_UTR 25.0%
! AACTAAAGACAAGAAAGAAT+GGG - chr3_3:24620737-24620756 None:intergenic 25.0%
! TAACTAAAGACAAGAAAGAA+TGG - chr3_3:24620738-24620757 None:intergenic 25.0%
!!! ACATTCATTGTTTCTTTTCT+TGG + chr3_3:24620815-24620834 Msa0447180:three_prime_UTR 25.0%
!!! TAGTTTTGCAATGAAAATTG+CGG + chr3_3:24620885-24620904 Msa0447180:three_prime_UTR 25.0%
!! AAGCACTTTGTGTAATTTTT+CGG + chr3_3:24620974-24620993 Msa0447180:three_prime_UTR 25.0%
! TTCAAATGAAATGTGAATAG+TGG + chr3_3:24621035-24621054 Msa0447180:three_prime_UTR 25.0%
! TCATTTAGAAATGTCAAAAG+AGG + chr3_3:24621058-24621077 Msa0447180:three_prime_UTR 25.0%
!!! ATTTTAGTGTTAGGTGATAT+AGG + chr3_3:24621162-24621181 Msa0447180:three_prime_UTR 25.0%
! GATCTTTGAGAAAGCTATAT+AGG - chr3_3:24617403-24617422 None:intergenic 30.0%
TACATGATAACTAAAGGACA+AGG + chr3_3:24617615-24617634 Msa0447180:CDS 30.0%
AGTAATTAATCCAACGAAGA+CGG - chr3_3:24617695-24617714 None:intergenic 30.0%
!!! CTTCTCATTTTTTTGAGAGA+AGG - chr3_3:24618428-24618447 None:intergenic 30.0%
ATCCTAAAATGTAACCAATC+TGG + chr3_3:24618450-24618469 Msa0447180:intron 30.0%
! GCAGATTCTAAACCTTTTAA+AGG + chr3_3:24618529-24618548 Msa0447180:intron 30.0%
AAATCTTAAGATCTTAGTGG+GGG - chr3_3:24618670-24618689 None:intergenic 30.0%
TAATATGTAACACAGACAGT+TGG - chr3_3:24618799-24618818 None:intergenic 30.0%
!! TCATAAAGCATCGATTATTG+AGG + chr3_3:24618923-24618942 Msa0447180:intron 30.0%
! TTTCAATCTTTTCTTCAGTG+TGG - chr3_3:24619453-24619472 None:intergenic 30.0%
AGAACTAATGACATTATGCA+TGG + chr3_3:24619583-24619602 Msa0447180:CDS 30.0%
ACAAGGAAAATGGATCAAAT+TGG - chr3_3:24619676-24619695 None:intergenic 30.0%
TTGTTAGACAACAAGGAAAA+TGG - chr3_3:24619686-24619705 None:intergenic 30.0%
GAAAACTTGTCATGTCATAA+CGG - chr3_3:24619709-24619728 None:intergenic 30.0%
! TTTAACACAAGTTGGCAATA+TGG + chr3_3:24619754-24619773 Msa0447180:CDS 30.0%
!! GCAATATGGTTGATGATATT+GGG + chr3_3:24619768-24619787 Msa0447180:CDS 30.0%
CTTCATAGTGATGATCATTA+TGG + chr3_3:24619791-24619810 Msa0447180:CDS 30.0%
! TGATGATCATTATGGGATTT+TGG + chr3_3:24619799-24619818 Msa0447180:CDS 30.0%
!! GATTTTGGAGGCTAATAAAA+TGG + chr3_3:24619814-24619833 Msa0447180:CDS 30.0%
!! TTTTGGAGGCTAATAAAATG+GGG + chr3_3:24619816-24619835 Msa0447180:CDS 30.0%
TGAAGCAACTATTATTGAAG+TGG - chr3_3:24619943-24619962 None:intergenic 30.0%
CAAGGAGAAAACTTAAGAAT+GGG + chr3_3:24620022-24620041 Msa0447180:CDS 30.0%
AAAACTTAAGAATGGGAGAA+TGG + chr3_3:24620029-24620048 Msa0447180:CDS 30.0%
AAACTTAAGAATGGGAGAAT+GGG + chr3_3:24620030-24620049 Msa0447180:CDS 30.0%
! CAGAGAAATTTTCTCTATTC+AGG - chr3_3:24620226-24620245 None:intergenic 30.0%
CATTGTAAAGATGAATGTAG+AGG + chr3_3:24620276-24620295 Msa0447180:three_prime_UTR 30.0%
CAAAGATATTCAAGGAGAAA+AGG - chr3_3:24620319-24620338 None:intergenic 30.0%
TTTCTCCTTGAATATCTTTG+TGG + chr3_3:24620319-24620338 Msa0447180:three_prime_UTR 30.0%
GATTTCCACAAAGATATTCA+AGG - chr3_3:24620327-24620346 None:intergenic 30.0%
! ATTTTACTGAGGAAGTAAGA+GGG - chr3_3:24620364-24620383 None:intergenic 30.0%
! TAAAAGCTGAGATTTTACTG+AGG - chr3_3:24620375-24620394 None:intergenic 30.0%
AGAGATAGAAAGACTTTGAA+AGG - chr3_3:24620509-24620528 None:intergenic 30.0%
GTGAAGATTAAGAGAAATCA+AGG - chr3_3:24620567-24620586 None:intergenic 30.0%
ATGTCTTCAATCAATATGCA+AGG + chr3_3:24620681-24620700 Msa0447180:three_prime_UTR 30.0%
AAGGTGACTAAAATACCTTA+TGG + chr3_3:24620700-24620719 Msa0447180:three_prime_UTR 30.0%
ATCTACCACAACATACAATT+GGG - chr3_3:24620856-24620875 None:intergenic 30.0%
TATCTACCACAACATACAAT+TGG - chr3_3:24620857-24620876 None:intergenic 30.0%
! ATTACACAAAGTGCTTTACA+AGG - chr3_3:24620970-24620989 None:intergenic 30.0%
!! TGTGTAATTTTTCGGTATGT+AGG + chr3_3:24620982-24621001 Msa0447180:three_prime_UTR 30.0%
!! TAATTTTTCGGTATGTAGGT+TGG + chr3_3:24620986-24621005 Msa0447180:three_prime_UTR 30.0%
!! AGGTTGGTACAAATAATCAA+AGG + chr3_3:24621002-24621021 Msa0447180:three_prime_UTR 30.0%
CAAAAGAGGCAAATAAATGT+AGG + chr3_3:24621072-24621091 Msa0447180:three_prime_UTR 30.0%
!! CTTATGAAGAAGCACTTTGA+GGG - chr3_3:24617459-24617478 None:intergenic 35.0%
!! TCTTATGAAGAAGCACTTTG+AGG - chr3_3:24617460-24617479 None:intergenic 35.0%
! AGGAAACCTGATTTGATCAT+GGG + chr3_3:24617513-24617532 Msa0447180:CDS 35.0%
! TCTTTTCCCATGATCAAATC+AGG - chr3_3:24617522-24617541 None:intergenic 35.0%
ACATTAACAAGAGCAAGCTA+AGG + chr3_3:24617550-24617569 Msa0447180:CDS 35.0%
TAACTAAAGGACAAGGTTGT+TGG + chr3_3:24617622-24617641 Msa0447180:CDS 35.0%
ATTCATTTCCACTCCATTCT+TGG + chr3_3:24617768-24617787 Msa0447180:CDS 35.0%
!! TGGACTAGTTAAATGACCTA+GGG - chr3_3:24617865-24617884 None:intergenic 35.0%
CACACCATAGCTATAAATTG+CGG + chr3_3:24617883-24617902 Msa0447180:intron 35.0%
AAGACCGCAATTTATAGCTA+TGG - chr3_3:24617890-24617909 None:intergenic 35.0%
CAAAGATACTCTTAGTTGAG+AGG + chr3_3:24617988-24618007 Msa0447180:intron 35.0%
TCCAACAAGACTACTTTGAA+AGG + chr3_3:24618054-24618073 Msa0447180:intron 35.0%
!! TCCTTTCAAAGTAGTCTTGT+TGG - chr3_3:24618058-24618077 None:intergenic 35.0%
!! GTCCAGATTGGTTACATTTT+AGG - chr3_3:24618455-24618474 None:intergenic 35.0%
AGAATCTGCTATTGCTATGA+AGG - chr3_3:24618518-24618537 None:intergenic 35.0%
AGGGTACATTTCCCTTTAAA+AGG - chr3_3:24618544-24618563 None:intergenic 35.0%
ACATGCATATTCATCGCATA+AGG + chr3_3:24618620-24618639 Msa0447180:intron 35.0%
AATCTTAAGATCTTAGTGGG+GGG - chr3_3:24618669-24618688 None:intergenic 35.0%
!!! TTTTTTTTGAGGGAAGGGTT+TGG + chr3_3:24618772-24618791 Msa0447180:intron 35.0%
! TATAAGCATGCTAGGGTTTT+TGG + chr3_3:24618848-24618867 Msa0447180:intron 35.0%
GGCAGCATTAGCTATTATTA+AGG + chr3_3:24618869-24618888 Msa0447180:intron 35.0%
GGTCTATAGCTTTCAACTTA+AGG + chr3_3:24618890-24618909 Msa0447180:intron 35.0%
! TGATGATGAAGATGATGATG+AGG - chr3_3:24619612-24619631 None:intergenic 35.0%
AAATTGGTCAGGTAAAACCA+TGG - chr3_3:24619660-24619679 None:intergenic 35.0%
GAAAATGGATCAAATTGGTC+AGG - chr3_3:24619671-24619690 None:intergenic 35.0%
ATAACGGTTGTTAGACAACA+AGG - chr3_3:24619693-24619712 None:intergenic 35.0%
!! GGCAATATGGTTGATGATAT+TGG + chr3_3:24619767-24619786 Msa0447180:CDS 35.0%
! TGATCATTATGGGATTTTGG+AGG + chr3_3:24619802-24619821 Msa0447180:CDS 35.0%
ATGCTAATTCTACTCTCTAG+TGG - chr3_3:24619869-24619888 None:intergenic 35.0%
TCACATTCAAAACTCCAATG+AGG + chr3_3:24619973-24619992 Msa0447180:CDS 35.0%
GCAAGGAGAAAACTTAAGAA+TGG + chr3_3:24620021-24620040 Msa0447180:CDS 35.0%
GAAATCAAGAGGAGGAAAAT+AGG - chr3_3:24620083-24620102 None:intergenic 35.0%
TAAACTTGGAAATCAAGAGG+AGG - chr3_3:24620091-24620110 None:intergenic 35.0%
AATTTAGAGAGAGATCAGAG+GGG - chr3_3:24620154-24620173 None:intergenic 35.0%
CAATTTAGAGAGAGATCAGA+GGG - chr3_3:24620155-24620174 None:intergenic 35.0%
ATACTCTACAACGAACCTTA+AGG + chr3_3:24620176-24620195 Msa0447180:three_prime_UTR 35.0%
AATTTAACGGTACGTACAAC+CGG + chr3_3:24620250-24620269 Msa0447180:three_prime_UTR 35.0%
ATTCATCTTTACAATGCAGC+CGG - chr3_3:24620272-24620291 None:intergenic 35.0%
! TTTTACTGAGGAAGTAAGAG+GGG - chr3_3:24620363-24620382 None:intergenic 35.0%
! GATTTTACTGAGGAAGTAAG+AGG - chr3_3:24620365-24620384 None:intergenic 35.0%
TAGGTAATACTATACACCGT+TGG + chr3_3:24620412-24620431 Msa0447180:three_prime_UTR 35.0%
! CTTTGAAAGGATTGTCATAG+AGG - chr3_3:24620496-24620515 None:intergenic 35.0%
TACAACCCAATTGTATGTTG+TGG + chr3_3:24620848-24620867 Msa0447180:three_prime_UTR 35.0%
! GTGTATACATAGTCTTGCTT+CGG + chr3_3:24620911-24620930 Msa0447180:three_prime_UTR 35.0%
TTAGCAGTGTTTATAGCACT+AGG + chr3_3:24621112-24621131 Msa0447180:three_prime_UTR 35.0%
TTATAGCACTAGGAACAATG+TGG + chr3_3:24621122-24621141 Msa0447180:three_prime_UTR 35.0%
CTCTCTCTCTAATGCAAATG+AGG + chr3_3:24617493-24617512 Msa0447180:exon 40.0%
! GAGGAAACCTGATTTGATCA+TGG + chr3_3:24617512-24617531 Msa0447180:CDS 40.0%
AACAAGAGCAAGCTAAGGAA+AGG + chr3_3:24617555-24617574 Msa0447180:CDS 40.0%
ACAAGAGCAAGCTAAGGAAA+GGG + chr3_3:24617556-24617575 Msa0447180:CDS 40.0%
ATGATGAGTTCTTCCTCTTG+TGG - chr3_3:24617750-24617769 None:intergenic 40.0%
AATGTACCTGTTGCCAAGAA+TGG - chr3_3:24617784-24617803 None:intergenic 40.0%
!! GTGGACTAGTTAAATGACCT+AGG - chr3_3:24617866-24617885 None:intergenic 40.0%
CGCAATTTATAGCTATGGTG+TGG - chr3_3:24617885-24617904 None:intergenic 40.0%
GCATTCTGACGTGTGAATTA+TGG - chr3_3:24617966-24617985 None:intergenic 40.0%
GCAGTGAAAATTGTCCAGAT+TGG - chr3_3:24618467-24618486 None:intergenic 40.0%
ATCTTAAGATCTTAGTGGGG+GGG - chr3_3:24618668-24618687 None:intergenic 40.0%
ACGTAGCATATAAGCATGCT+AGG + chr3_3:24618840-24618859 Msa0447180:intron 40.0%
CGTAGCATATAAGCATGCTA+GGG + chr3_3:24618841-24618860 Msa0447180:intron 40.0%
! TGGAGTAGAGTTGTTGTTGT+TGG - chr3_3:24619477-24619496 None:intergenic 40.0%
TCCAAACAACAGTGACACTT+CGG + chr3_3:24619499-24619518 Msa0447180:CDS 40.0%
CTAATTCTACTCTCTAGTGG+AGG - chr3_3:24619866-24619885 None:intergenic 40.0%
!! GAAGATAAGAGTGCCCTAAT+TGG + chr3_3:24619890-24619909 Msa0447180:CDS 40.0%
! AACTCCAATGAGGACTTGTT+TGG + chr3_3:24619983-24620002 Msa0447180:CDS 40.0%
! ACTCCAATGAGGACTTGTTT+GGG + chr3_3:24619984-24620003 Msa0447180:CDS 40.0%
AAACCCAAACAAGTCCTCAT+TGG - chr3_3:24619990-24620009 None:intergenic 40.0%
! AATGAGGACTTGTTTGGGTT+TGG + chr3_3:24619989-24620008 Msa0447180:CDS 40.0%
! TTGTTTGGGTTTGGAAGTCA+TGG + chr3_3:24619998-24620017 Msa0447180:CDS 40.0%
! TGTTTGGGTTTGGAAGTCAT+GGG + chr3_3:24619999-24620018 Msa0447180:CDS 40.0%
AAGAATGGGAGAATGGGATT+TGG + chr3_3:24620036-24620055 Msa0447180:CDS 40.0%
CCAATTTAGAGAGAGATCAG+AGG - chr3_3:24620156-24620175 None:intergenic 40.0%
CCTCTGATCTCTCTCTAAAT+TGG + chr3_3:24620153-24620172 Msa0447180:three_prime_UTR 40.0%
TTCAAGGAGAAAAGGAAGAG+TGG - chr3_3:24620311-24620330 None:intergenic 40.0%
!! ATGAGAAGACATTGACTTGG+AGG - chr3_3:24620625-24620644 None:intergenic 40.0%
TCCAAGTCAATGTCTTCTCA+TGG + chr3_3:24620624-24620643 Msa0447180:three_prime_UTR 40.0%
! ACCATGAGAAGACATTGACT+TGG - chr3_3:24620628-24620647 None:intergenic 40.0%
CTTTACAAGGAAACCCACAA+GGG - chr3_3:24620957-24620976 None:intergenic 40.0%
GCAAGCTAAGGAAAGGGTTA+TGG + chr3_3:24617562-24617581 Msa0447180:CDS 45.0%
ACCTGAGGAAGATGAGAAGT+TGG + chr3_3:24617587-24617606 Msa0447180:CDS 45.0%
ACCAACTTCTCATCTTCCTC+AGG - chr3_3:24617591-24617610 None:intergenic 45.0%
GTTGTTGGAGTGACATTGCT+AGG + chr3_3:24617637-24617656 Msa0447180:CDS 45.0%
AGTGACATTGCTAGGAATGC+TGG + chr3_3:24617645-24617664 Msa0447180:CDS 45.0%
!! CTAGGAATGCTGGTCTTCAA+AGG + chr3_3:24617655-24617674 Msa0447180:CDS 45.0%
!! AATGCTGGTCTTCAAAGGTG+TGG + chr3_3:24617660-24617679 Msa0447180:CDS 45.0%
GTAAAAGTTGCCGTCTTCGT+TGG + chr3_3:24617682-24617701 Msa0447180:CDS 45.0%
TTGAGACCTGATCTTAAGCG+CGG + chr3_3:24617714-24617733 Msa0447180:CDS 45.0%
AGGTAGACGTGCTGCAATTT+GGG - chr3_3:24619393-24619412 None:intergenic 45.0%
ATTTCATTGTCGGTACGACC+AGG - chr3_3:24619413-24619432 None:intergenic 45.0%
! GTGTCACTGTTGTTTGGAGA+TGG - chr3_3:24619497-24619516 None:intergenic 45.0%
! TCCGAAGTGTCACTGTTGTT+TGG - chr3_3:24619503-24619522 None:intergenic 45.0%
! ATGCATGTGCATGGATTGCA+TGG - chr3_3:24619636-24619655 None:intergenic 45.0%
ATCCATGCACATGCATACCA+TGG + chr3_3:24619640-24619659 Msa0447180:CDS 45.0%
AACCATGGTATGCATGTGCA+TGG - chr3_3:24619645-24619664 None:intergenic 45.0%
AATGGGAGAATGGGATTTGG+AGG + chr3_3:24620039-24620058 Msa0447180:CDS 45.0%
ATGGGAGAATGGGATTTGGA+GGG + chr3_3:24620040-24620059 Msa0447180:CDS 45.0%
CAGGTATAGTTGTCTACAGC+CGG - chr3_3:24620207-24620226 None:intergenic 45.0%
ATAGAGGACGAGATCCTCTT+CGG - chr3_3:24620480-24620499 None:intergenic 45.0%
TTGCATTCTTTGTGCCCTTG+TGG + chr3_3:24620940-24620959 Msa0447180:three_prime_UTR 45.0%
TGCATTCTTTGTGCCCTTGT+GGG + chr3_3:24620941-24620960 Msa0447180:three_prime_UTR 45.0%
GCTTTACAAGGAAACCCACA+AGG - chr3_3:24620958-24620977 None:intergenic 45.0%
!! AATTAATTATTTATTTCAAA+AGG + chr3_3:24618353-24618372 Msa0447180:intron 5.0%
!! ATTAATTATTTATTTCAAAA+GGG + chr3_3:24618354-24618373 Msa0447180:intron 5.0%
GAAAGGGTTATGGTCACCTG+AGG + chr3_3:24617572-24617591 Msa0447180:CDS 50.0%
TCCACTCCATTCTTGGCAAC+AGG + chr3_3:24617775-24617794 Msa0447180:CDS 50.0%
ACCTGTTGCCAAGAATGGAG+TGG - chr3_3:24617779-24617798 None:intergenic 50.0%
TTGAGGTCTGTCTTGTGCAG+TGG + chr3_3:24618940-24618959 Msa0447180:intron 50.0%
CAGGTAGACGTGCTGCAATT+TGG - chr3_3:24619394-24619413 None:intergenic 50.0%
CAAATTGCAGCACGTCTACC+TGG + chr3_3:24619392-24619411 Msa0447180:CDS 50.0%
AGAGAGATCAGAGGGGACAA+GGG - chr3_3:24620147-24620166 None:intergenic 50.0%
AACGAACCTTAAGGTGCAGC+CGG + chr3_3:24620185-24620204 Msa0447180:three_prime_UTR 50.0%
GGAAGTAAGAGGGGTCATAG+CGG - chr3_3:24620354-24620373 None:intergenic 50.0%
AAAAGGTAGATGGGCCGAAG+AGG + chr3_3:24620463-24620482 Msa0447180:three_prime_UTR 50.0%
TGGGTGCCCAAGATTCCATA+AGG - chr3_3:24620718-24620737 None:intergenic 50.0%
AATGCGCCGCGCTTAAGATC+AGG - chr3_3:24617723-24617742 None:intergenic 55.0%
GGGTTTGGAAGTCATGGGCA+AGG + chr3_3:24620004-24620023 Msa0447180:CDS 55.0%
GAGAGATCAGAGGGGACAAG+GGG - chr3_3:24620146-24620165 None:intergenic 55.0%
GAGAGAGATCAGAGGGGACA+AGG - chr3_3:24620148-24620167 None:intergenic 55.0%
! CGGCGCATTTTCGCCACAAG+AGG + chr3_3:24617734-24617753 Msa0447180:CDS 60.0%
CAGAGGGGACAAGGGGTGAT+TGG - chr3_3:24620139-24620158 None:intergenic 60.0%
CTACAGCCGGCTGCACCTTA+AGG - chr3_3:24620194-24620213 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 24617366 24621204 24617366 ID=Msa0447180;Name=Msa0447180
chr3_3 mRNA 24617366 24621204 24617366 ID=Msa0447180-mRNA-1;Parent=Msa0447180;Name=Msa0447180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=138|1|1|1|1|1|2|1093|339
chr3_3 exon 24617366 24617796 24617366 ID=Msa0447180-mRNA-1:exon:4882;Parent=Msa0447180-mRNA-1
chr3_3 exon 24619385 24621204 24619385 ID=Msa0447180-mRNA-1:exon:4883;Parent=Msa0447180-mRNA-1
chr3_3 five_prime_UTR 24617366 24617503 24617366 ID=Msa0447180-mRNA-1:five_prime_utr;Parent=Msa0447180-mRNA-1
chr3_3 CDS 24617504 24617796 24617504 ID=Msa0447180-mRNA-1:cds;Parent=Msa0447180-mRNA-1
chr3_3 CDS 24619385 24620111 24619385 ID=Msa0447180-mRNA-1:cds;Parent=Msa0447180-mRNA-1
chr3_3 three_prime_UTR 24620112 24621204 24620112 ID=Msa0447180-mRNA-1:three_prime_utr;Parent=Msa0447180-mRNA-1
Gene Sequence

>Msa0447180

ATGCAAATGAGGAAACCTGATTTGATCATGGGAAAAGACAACAACAACATTAACAAGAGCAAGCTAAGGAAAGGGTTATGGTCACCTGAGGAAGATGAGAAGTTGGTAAGATACATGATAACTAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGTAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTTAAGCGCGGCGCATTTTCGCCACAAGAGGAAGAACTCATCATTCATTTCCACTCCATTCTTGGCAACAGATGGTCCCAAATTGCAGCACGTCTACCTGGTCGTACCGACAATGAAATAAAGAATTTTTGGAATTCCACACTGAAGAAAAGATTGAAAACCAACAACAACAACTCTACTCCATCTCCAAACAACAGTGACACTTCGGATCAACCAATAGATAATGTTTTTGATGTGAAAAATAACATGATCATGCCAATTAATGAACAAGAACTAATGACATTATGCATGGATTCCTCATCATCATCTTCATCATCATCCATGCAATCCATGCACATGCATACCATGGTTTTACCTGACCAATTTGATCCATTTTCCTTGTTGTCTAACAACCGTTATGACATGACAAGTTTTCATGCTCATGACTTGCCAAATAGTTGTTTAACACAAGTTGGCAATATGGTTGATGATATTGGGCTTCATAGTGATGATCATTATGGGATTTTGGAGGCTAATAAAATGGGGTTATTAGAAAATGATTTTGAACTTCCTCCACTAGAGAGTAGAATTAGCATTGAAGATAAGAGTGCCCTAATTGGTGATTATAATGTGAAAAGCCATAACAACCACTTCAATAATAGTTGCTTCAATAACACTAATCACATTCAAAACTCCAATGAGGACTTGTTTGGGTTTGGAAGTCATGGGCAAGGAGAAAACTTAAGAATGGGAGAATGGGATTTGGAGGGTTTGATGCAAGACATATCCTATTTTCCTCCTCTTGATTTCCAAGTTTAA
Protein sequence

>Msa0447180

MQMRKPDLIMGKDNNNINKSKLRKGLWSPEEDEKLVRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNNSTPSPNNSDTSDQPIDNVFDVKNNMIMPINEQELMTLCMDSSSSSSSSSMQSMHMHTMVLPDQFDPFSLLSNNRYDMTSFHAHDLPNSCLTQVGNMVDDIGLHSDDHYGILEANKMGLLENDFELPPLESRISIEDKSALIGDYNVKSHNNHFNNSCFNNTNHIQNSNEDLFGFGSHGQGENLRMGEWDLEGLMQDISYFPPLDFQV*