AlfalfaGEDB | Msa0400030

M. sativa cultivar zhongmu-4 / Msa0400030

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0400030	XP_013459180.1	95.918	343	9	4	1	338	1	343	0.0	664

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0400030	sp\|Q9C6U1\|MYB83_ARATH	46.281	363	149	12	1	338	1	342	9.87e-79	247

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0400030	A0A072UVZ0	95.918	343	9	4	1	338	1	343	0.0	664

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TFs/TRs:

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Gene ID	Type	Classification
Msa0400030	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0353030	Msa0400030	0.803966	2.708425e-49	-8.615850e-47
Msa0400030	Msa0443810	0.879343	1.346342e-69	-8.615850e-47
Msa0400030	Msa0447180	0.909938	3.272866e-82	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0400030	MtrunA17_Chr3g0088461	95.918	343	9	4	1	338	1	343	0.0	664
Msa0400030	MtrunA17_Chr4g0032401	45.355	366	132	12	3	336	1	330	7.52e-85	259
Msa0400030	MtrunA17_Chr2g0328771	46.628	341	145	10	3	331	1	316	7.53e-77	238
Msa0400030	MtrunA17_Chr1g0193371	78.899	109	23	0	19	127	9	117	4.00e-59	194
Msa0400030	MtrunA17_Chr1g0193801	76.147	109	26	0	19	127	9	117	5.31e-58	192
Msa0400030	MtrunA17_Chr1g0211161	59.146	164	63	3	19	180	10	171	1.47e-57	186
Msa0400030	MtrunA17_Chr2g0330041	73.394	109	29	0	18	126	8	116	2.08e-57	191
Msa0400030	MtrunA17_Chr8g0342541	72.477	109	30	0	18	126	8	116	3.15e-57	189
Msa0400030	MtrunA17_Chr3g0117091	59.064	171	59	4	19	182	9	175	3.41e-57	189
Msa0400030	MtrunA17_Chr7g0270891	76.147	109	26	0	19	127	9	117	3.79e-57	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0400030	AT3G08500.1	46.281	363	149	12	1	338	1	342	1.00e-79	247
Msa0400030	AT5G12870.1	78.400	125	25	1	3	127	1	123	1.08e-69	219
Msa0400030	AT4G01680.3	77.982	109	24	0	19	127	9	117	2.69e-59	191
Msa0400030	AT4G01680.1	77.982	109	24	0	19	127	9	117	1.33e-58	192
Msa0400030	AT5G26660.1	53.226	186	71	2	19	204	9	178	1.38e-58	193
Msa0400030	AT3G13890.2	74.312	109	28	0	18	126	8	116	2.58e-58	192
Msa0400030	AT1G09540.1	76.147	109	26	0	19	127	9	117	3.04e-58	192
Msa0400030	AT1G57560.1	75.000	108	27	0	19	126	9	116	3.23e-57	188
Msa0400030	AT1G57560.2	75.000	108	27	0	19	126	9	116	3.84e-57	187
Msa0400030	AT1G63910.1	68.182	110	35	0	18	127	8	117	1.98e-55	185

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Find 139 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAAGAATGGGAGAA+TGG	0.437647	3_2:+23900386	Msa0400030:CDS
AAAAGGTAGATGGGCCGAAG+AGG	0.611350	3_2:+23900820	Msa0400030:three_prime_UTR
AAAATACCTTATGGAATCTT+GGG	0.410847	3_2:+23901064	Msa0400030:three_prime_UTR
AAAATTCTTTATTTCATTGT+CGG	0.387116	3_2:-23899780	None:intergenic
AAACCCAAACAAGTCCTCAT+TGG	0.462806	3_2:-23900344	None:intergenic
AAACTTAAGAATGGGAGAAT+GGG	0.456783	3_2:+23900387	Msa0400030:CDS
AAATTGGTCAGGTAAAACCA+TGG	0.714456	3_2:-23900017	None:intergenic
AACAAGAGCAAGCTAAGGAA+AGG	0.537747	3_2:+23897914	Msa0400030:CDS
AACCATGGTATGCATGTGCA+TGG	0.586474	3_2:-23900002	None:intergenic
AACGAACCTTAAGGTGCAGC+CGG	0.573342	3_2:+23900542	Msa0400030:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACATGATAACTAAAGGACA+AGG	+	chr3_2:23897974-23897993	Msa0400030:CDS	30.0%
AGTAATTAATCCAACGAAGA+CGG	-	chr3_2:23898054-23898073	None:intergenic	30.0%
ATCCTAAAATGTAACCAATC+TGG	+	chr3_2:23898808-23898827	Msa0400030:intron	30.0%
AAATCTTAAGATCTTAGTGG+GGG	-	chr3_2:23899028-23899047	None:intergenic	30.0%
TAATATGTAACACAGACAGT+TGG	-	chr3_2:23899158-23899177	None:intergenic	30.0%
AGAACTAATGACATTATGCA+TGG	+	chr3_2:23899943-23899962	Msa0400030:CDS	30.0%
ACAAGGAAAATGGATCAAAT+TGG	-	chr3_2:23900036-23900055	None:intergenic	30.0%
ATAACGGTTATTAGACAACA+AGG	-	chr3_2:23900053-23900072	None:intergenic	30.0%
ATGCTAATTCTACTTTCTAG+TGG	-	chr3_2:23900226-23900245	None:intergenic	30.0%
TGAAGCAACTATTATTGAAG+TGG	-	chr3_2:23900300-23900319	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	23897765	23901559	23897765	ID=Msa0400030;Name=Msa0400030
chr3_2	mRNA	23897765	23901559	23897765	ID=Msa0400030-mRNA-1;Parent=Msa0400030;Name=Msa0400030-mRNA-1;_AED=0.03;_eAED=0.03;_QI=98\|1\|1\|1\|1\|1\|2\|1091\|338
chr3_2	exon	23897765	23898155	23897765	ID=Msa0400030-mRNA-1:exon:5022;Parent=Msa0400030-mRNA-1
chr3_2	exon	23899745	23901559	23899745	ID=Msa0400030-mRNA-1:exon:5023;Parent=Msa0400030-mRNA-1
chr3_2	five_prime_UTR	23897765	23897862	23897765	ID=Msa0400030-mRNA-1:five_prime_utr;Parent=Msa0400030-mRNA-1
chr3_2	CDS	23897863	23898155	23897863	ID=Msa0400030-mRNA-1:cds;Parent=Msa0400030-mRNA-1
chr3_2	CDS	23899745	23900468	23899745	ID=Msa0400030-mRNA-1:cds;Parent=Msa0400030-mRNA-1
chr3_2	three_prime_UTR	23900469	23901559	23900469	ID=Msa0400030-mRNA-1:three_prime_utr;Parent=Msa0400030-mRNA-1

Gene Sequence

>Msa0400030

ATGCAAATGAGGAAACCTGATTTGATCATGGGAAAAGACAACAACAACATTAACAAGAGCAAGCTAAGGAAAGGGTTATGGTCACCTGAGGAAGATGAGAAGTTGGTAAGATACATGATAACTAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGTAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTTAAGCGCGGCGCATTTTCGCCACAAGAGGAAGAACTCATCATTCATTTCCACTCCATTCTTGGCAACAGATGGTCCCAAATTGCAGCACGTCTACCTGGTCGTACCGACAATGAAATAAAGAATTTTTGGAATTCCACACTGAAGAAAAGATTGAAAACCAACAACAACAACTCTACTCCATCTCCAAACAACAGTGACACTTCGGATCAACCAATAGATAATGTTTTTGATGTGAAAAATAACATGATCATGCCAATTAATGAACAAGAACTAATGACATTATGCATGGATTCCTCATCATCAACTTCATCATCATCCATGCAATCCATGCACATGCATACCATGGTTTTACCTGACCAATTTGATCCATTTTCCTTGTTGTCTAATAACCGTTATGACATGACAAGTTTCCATGCTCATGACATGTCAAATAGTTGTTTAACACAAGTTGGCAATATCGTTGATGATATTGGGCTTCATAGTGATGATTATGGGATTTTGGAGGCTAATAAAATGGGGTTATTAGAAAATGATTTTGAACTTCCTCCACTAGAAAGTAGAATTAGCATTGAAGATAAGAGTGCCCTAATTGGTGATTATAATGTGAAAAGCCATAACAACCACTTCAATAATAGTTGCTTCAATAACACTAATCACATTCAAAACTCCAATGAGGACTTGTTTGGGTTTGGAAGTCATGGGCAAGGAGAAAACTTAAGAATGGGAGAATGGGATTTGGAGGGTTTGATGCAAGACATATCCTATTTTCCTCCTCTTGATTTCCAAGTTTAA

Protein sequence

>Msa0400030

MQMRKPDLIMGKDNNNINKSKLRKGLWSPEEDEKLVRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNNSTPSPNNSDTSDQPIDNVFDVKNNMIMPINEQELMTLCMDSSSSTSSSSMQSMHMHTMVLPDQFDPFSLLSNNRYDMTSFHAHDMSNSCLTQVGNIVDDIGLHSDDYGILEANKMGLLENDFELPPLESRISIEDKSALIGDYNVKSHNNHFNNSCFNNTNHIQNSNEDLFGFGSHGQGENLRMGEWDLEGLMQDISYFPPLDFQV*