AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0400030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0400030 MtrunA17_Chr3g0088461 95.918 343 9 4 1 338 1 343 0.0 664
Msa0400030 MtrunA17_Chr4g0032401 45.355 366 132 12 3 336 1 330 7.52e-85 259
Msa0400030 MtrunA17_Chr2g0328771 46.628 341 145 10 3 331 1 316 7.53e-77 238
Msa0400030 MtrunA17_Chr1g0193371 78.899 109 23 0 19 127 9 117 4.00e-59 194
Msa0400030 MtrunA17_Chr1g0193801 76.147 109 26 0 19 127 9 117 5.31e-58 192
Msa0400030 MtrunA17_Chr1g0211161 59.146 164 63 3 19 180 10 171 1.47e-57 186
Msa0400030 MtrunA17_Chr2g0330041 73.394 109 29 0 18 126 8 116 2.08e-57 191
Msa0400030 MtrunA17_Chr8g0342541 72.477 109 30 0 18 126 8 116 3.15e-57 189
Msa0400030 MtrunA17_Chr3g0117091 59.064 171 59 4 19 182 9 175 3.41e-57 189
Msa0400030 MtrunA17_Chr7g0270891 76.147 109 26 0 19 127 9 117 3.79e-57 189
Msa0400030 MtrunA17_Chr8g0342521 73.394 109 29 0 18 126 8 116 5.79e-57 188
Msa0400030 MtrunA17_Chr4g0058631 76.852 108 25 0 19 126 9 116 1.02e-56 188
Msa0400030 MtrunA17_Chr8g0387421 67.273 110 36 0 18 127 8 117 1.05e-54 181
Msa0400030 MtrunA17_Chr8g0342481 66.942 121 39 1 18 137 8 128 2.59e-54 182
Msa0400030 MtrunA17_Chr7g0271241 60.403 149 44 2 19 152 9 157 1.71e-53 180
Msa0400030 MtrunA17_Chr5g0397231 69.903 103 31 0 18 120 8 110 1.73e-53 179
Msa0400030 MtrunA17_Chr2g0309911 42.922 219 110 5 18 223 7 223 2.27e-52 175
Msa0400030 MtrunA17_Chr1g0203441 70.370 108 32 0 19 126 10 117 3.38e-50 168
Msa0400030 MtrunA17_Chr4g0037141 34.169 319 152 10 19 324 9 282 7.33e-50 168
Msa0400030 MtrunA17_Chr6g0470971 66.055 109 37 0 17 125 9 117 4.13e-48 163
Msa0400030 MtrunA17_Chr2g0323411 66.972 109 36 0 18 126 8 116 5.10e-48 164
Msa0400030 MtrunA17_Chr3g0131121 64.815 108 38 0 19 126 9 116 5.16e-48 163
Msa0400030 MtrunA17_Chr5g0435101 58.871 124 42 2 3 126 1 115 5.56e-48 160
Msa0400030 MtrunA17_Chr3g0115821 65.138 109 38 0 18 126 8 116 5.76e-48 164
Msa0400030 MtrunA17_Chr2g0281071 67.619 105 34 0 22 126 13 117 7.33e-48 164
Msa0400030 MtrunA17_Chr2g0323351 55.303 132 56 1 18 146 8 139 2.82e-47 160
Msa0400030 MtrunA17_Chr4g0048511 66.667 105 35 0 22 126 13 117 3.95e-47 162
Msa0400030 MtrunA17_Chr8g0385321 59.483 116 47 0 19 134 9 124 6.45e-47 161
Msa0400030 MtrunA17_Chr1g0203411 54.615 130 57 1 19 146 9 138 8.38e-47 160
Msa0400030 MtrunA17_Chr7g0217741 64.815 108 38 0 19 126 9 116 6.03e-46 158
Msa0400030 MtrunA17_Chr6g0453471 64.220 109 39 0 18 126 8 116 7.18e-46 159
Msa0400030 MtrunA17_Chr4g0042671 65.741 108 37 0 19 126 9 116 1.06e-45 160
Msa0400030 MtrunA17_Chr8g0349261 61.017 118 45 1 10 126 1 118 1.76e-45 157
Msa0400030 MtrunA17_Chr7g0274581 62.264 106 40 0 22 127 12 117 1.77e-45 154
Msa0400030 MtrunA17_Chr4g0057031 61.468 109 42 0 18 126 8 116 2.24e-45 155
Msa0400030 MtrunA17_Chr4g0022931 56.061 132 55 1 19 147 10 141 2.46e-45 155
Msa0400030 MtrunA17_Chr5g0410961 61.905 105 40 0 22 126 12 116 4.03e-45 157
Msa0400030 MtrunA17_Chr3g0110351 61.818 110 42 0 18 127 8 117 4.60e-45 156
Msa0400030 MtrunA17_Chr5g0434571 55.556 144 57 4 9 146 36 178 6.35e-45 157
Msa0400030 MtrunA17_Chr4g0044421 58.065 124 44 1 3 126 1 116 6.49e-45 152
Msa0400030 MtrunA17_Chr5g0395281 63.303 109 40 0 18 126 8 116 8.61e-45 155
Msa0400030 MtrunA17_Chr4g0070611 58.678 121 46 1 19 135 9 129 1.21e-44 155
Msa0400030 MtrunA17_Chr4g0070641 58.197 122 47 1 19 136 9 130 1.60e-44 150
Msa0400030 MtrunA17_Chr1g0167661 57.364 129 55 0 19 147 9 137 1.99e-44 152
Msa0400030 MtrunA17_Chr4g0039971 61.468 109 42 0 18 126 9 117 2.17e-44 155
Msa0400030 MtrunA17_Chr6g0452271 57.798 109 46 0 18 126 8 116 2.87e-44 154
Msa0400030 MtrunA17_Chr4g0068061 61.111 108 42 0 19 126 9 116 6.79e-44 154
Msa0400030 MtrunA17_Chr4g0022901 62.617 107 40 0 19 125 10 116 1.08e-43 151
Msa0400030 MtrunA17_Chr1g0187761 55.556 135 54 1 19 147 9 143 1.11e-43 151
Msa0400030 MtrunA17_Chr7g0275911 59.091 110 45 0 18 127 8 117 1.88e-43 150
Msa0400030 MtrunA17_Chr7g0228891 60.909 110 43 0 18 127 8 117 2.16e-43 150
Msa0400030 MtrunA17_Chr8g0343831 61.538 104 40 0 24 127 10 113 2.97e-43 149
Msa0400030 MtrunA17_Chr8g0346561 53.125 128 59 1 19 146 9 135 3.69e-43 150
Msa0400030 MtrunA17_Chr3g0103281 62.037 108 41 0 19 126 9 116 4.53e-43 151
Msa0400030 MtrunA17_Chr7g0261281 59.664 119 45 1 19 134 9 127 5.53e-43 149
Msa0400030 MtrunA17_Chr3g0121241 59.259 108 44 0 19 126 39 146 8.53e-43 150
Msa0400030 MtrunA17_Chr1g0167691 62.963 108 40 0 19 126 9 116 1.10e-42 148
Msa0400030 MtrunA17_Chr4g0055981 55.085 118 53 0 8 125 41 158 1.90e-42 147
Msa0400030 MtrunA17_Chr4g0022911 41.176 204 106 4 20 220 11 203 2.06e-42 149
Msa0400030 MtrunA17_Chr7g0254411 51.773 141 63 2 19 156 9 147 1.08e-41 148
Msa0400030 MtrunA17_Chr7g0228231 53.982 113 52 0 22 134 14 126 1.50e-41 144
Msa0400030 MtrunA17_Chr1g0151941 49.612 129 55 2 18 136 8 136 2.59e-41 144
Msa0400030 MtrunA17_Chr1g0194951 60.185 108 43 0 19 126 9 116 4.19e-41 147
Msa0400030 MtrunA17_Chr6g0450101 53.448 116 54 0 12 127 4 119 8.77e-41 142
Msa0400030 MtrunA17_Chr2g0311221 61.165 103 40 0 18 120 10 112 9.89e-41 145
Msa0400030 MtrunA17_Chr1g0209661 53.982 113 52 0 15 127 20 132 1.27e-40 144
Msa0400030 MtrunA17_Chr1g0168661 60.000 105 42 0 23 127 22 126 1.44e-40 143
Msa0400030 MtrunA17_Chr7g0217221 55.932 118 49 1 17 131 7 124 4.31e-40 142
Msa0400030 MtrunA17_Chr1g0186061 51.639 122 59 0 17 138 15 136 7.62e-40 141
Msa0400030 MtrunA17_Chr8g0342511 71.605 81 23 0 17 97 7 87 2.23e-39 134
Msa0400030 MtrunA17_Chr4g0060721 38.889 180 100 1 19 198 10 179 3.63e-39 141
Msa0400030 MtrunA17_Chr3g0099131 54.630 108 49 0 20 127 39 146 3.69e-39 145
Msa0400030 MtrunA17_Chr8g0342531 64.773 88 31 0 12 99 2 89 4.14e-39 136
Msa0400030 MtrunA17_Chr3g0092401 55.357 112 50 0 19 130 10 121 5.98e-39 140
Msa0400030 MtrunA17_Chr5g0417821 59.048 105 43 0 22 126 7 111 6.16e-39 139
Msa0400030 MtrunA17_Chr1g0154031 56.481 108 47 0 22 129 76 183 8.65e-39 142
Msa0400030 MtrunA17_Chr4g0022881 48.092 131 68 0 17 147 7 137 9.99e-39 137
Msa0400030 MtrunA17_Chr1g0194291 57.273 110 47 0 18 127 17 126 1.02e-38 138
Msa0400030 MtrunA17_Chr1g0180391 49.618 131 64 1 22 150 19 149 1.10e-38 137
Msa0400030 MtrunA17_Chr6g0453211 58.252 103 43 0 18 120 8 110 1.80e-38 139
Msa0400030 MtrunA17_Chr3g0080861 55.140 107 48 0 22 128 37 143 2.16e-38 143
Msa0400030 MtrunA17_Chr4g0022891 46.154 143 73 1 18 160 8 146 2.47e-38 136
Msa0400030 MtrunA17_Chr5g0400821 55.455 110 48 1 18 126 8 117 3.62e-38 138
Msa0400030 MtrunA17_Chr1g0152011 56.364 110 47 1 18 126 8 117 3.75e-38 139
Msa0400030 MtrunA17_Chr8g0354661 55.769 104 46 0 22 125 37 140 4.30e-38 142
Msa0400030 MtrunA17_Chr4g0028311 55.455 110 48 1 18 126 8 117 6.86e-38 137
Msa0400030 MtrunA17_Chr7g0247131 74.667 75 19 0 54 128 10 84 1.19e-37 135
Msa0400030 MtrunA17_Chr7g0269831 57.851 121 51 0 19 139 9 129 1.94e-37 137
Msa0400030 MtrunA17_Chr3g0135311 53.636 110 50 1 18 126 8 117 2.66e-37 136
Msa0400030 MtrunA17_Chr7g0264641 48.760 121 61 1 18 137 8 128 7.92e-37 133
Msa0400030 MtrunA17_Chr1g0194301 53.774 106 49 0 22 127 33 138 9.15e-37 133
Msa0400030 MtrunA17_Chr4g0030881 50.833 120 52 1 23 135 8 127 9.56e-37 133
Msa0400030 MtrunA17_Chr8g0342461 68.675 83 25 1 18 99 8 90 1.49e-36 129
Msa0400030 MtrunA17_Chr2g0327351 55.769 104 45 1 18 120 8 111 2.36e-36 133
Msa0400030 MtrunA17_Chr8g0342471 68.675 83 25 1 18 99 8 90 3.07e-36 128
Msa0400030 MtrunA17_Chr2g0322521 53.636 110 51 0 19 128 26 135 3.58e-36 134
Msa0400030 MtrunA17_Chr2g0327821 50.000 118 59 0 19 136 3 120 4.10e-36 130
Msa0400030 MtrunA17_Chr5g0434931 48.855 131 61 4 1 126 10 139 2.54e-35 129
Msa0400030 MtrunA17_Chr7g0240821 49.138 116 59 0 27 142 6 121 5.75e-35 127
Msa0400030 MtrunA17_Chr4g0054391 55.340 103 45 1 18 119 8 110 8.53e-35 129
Msa0400030 MtrunA17_Chr6g0487491 42.262 168 85 4 18 173 8 175 8.83e-35 127
Msa0400030 MtrunA17_Chr5g0434911 47.581 124 62 1 6 126 2 125 1.09e-34 128
Msa0400030 MtrunA17_Chr4g0072751 53.846 104 47 1 18 120 8 111 1.56e-34 129
Msa0400030 MtrunA17_Chr2g0293911 55.660 106 47 0 22 127 24 129 3.13e-34 128
Msa0400030 MtrunA17_Chr1g0192411 52.336 107 51 0 21 127 11 117 3.56e-34 129
Msa0400030 MtrunA17_Chr8g0360111 53.333 105 49 0 18 122 21 125 6.30e-34 125
Msa0400030 MtrunA17_Chr4g0068921 54.717 106 48 0 22 127 24 129 1.10e-33 123
Msa0400030 MtrunA17_Chr5g0434831 52.381 105 50 0 22 126 7 111 2.74e-33 122
Msa0400030 MtrunA17_Chr7g0220341 45.455 132 70 1 18 147 21 152 3.76e-33 124
Msa0400030 MtrunA17_Chr5g0440781 48.305 118 57 2 23 139 13 127 6.49e-33 120
Msa0400030 MtrunA17_Chr5g0440761 48.305 118 57 2 23 139 13 127 1.51e-32 122
Msa0400030 MtrunA17_Chr5g0441141 48.305 118 57 2 23 139 13 127 1.57e-32 122
Msa0400030 MtrunA17_Chr4g0042611 60.000 80 32 0 19 98 9 88 2.83e-32 115
Msa0400030 MtrunA17_Chr5g0434841 49.524 105 53 0 22 126 20 124 1.31e-31 120
Msa0400030 MtrunA17_Chr7g0228991 51.887 106 49 2 22 126 29 133 2.02e-31 119
Msa0400030 MtrunA17_Chr5g0395221 64.198 81 29 0 18 98 8 88 6.96e-31 112
Msa0400030 MtrunA17_Chr5g0441131 44.355 124 65 2 23 145 10 130 3.88e-30 113
Msa0400030 MtrunA17_Chr8g0334881 50.962 104 50 1 22 124 10 113 1.72e-29 115
Msa0400030 MtrunA17_Chr4g0013361 49.573 117 56 3 22 137 10 124 2.03e-29 114
Msa0400030 MtrunA17_Chr4g0053431 41.566 166 76 4 24 169 5 169 2.08e-29 114
Msa0400030 MtrunA17_Chr4g0008551 54.902 102 45 1 24 125 38 138 4.19e-29 114
Msa0400030 MtrunA17_Chr2g0323321 61.728 81 31 0 22 102 11 91 9.99e-29 107
Msa0400030 MtrunA17_Chr5g0401731 37.500 200 91 6 13 180 2 199 2.20e-28 112
Msa0400030 MtrunA17_Chr3g0099141 49.425 87 44 0 18 104 36 122 3.13e-28 107
Msa0400030 MtrunA17_Chr5g0429661 41.880 117 67 1 9 125 107 222 3.38e-28 112
Msa0400030 MtrunA17_Chr6g0454921 49.524 105 52 1 24 128 15 118 6.13e-28 108
Msa0400030 MtrunA17_Chr3g0133601 53.636 110 50 1 16 125 29 137 1.64e-27 107
Msa0400030 MtrunA17_Chr2g0294811 56.790 81 35 0 18 98 8 88 2.45e-27 103
Msa0400030 MtrunA17_Chr3g0117511 30.258 271 168 8 4 271 170 422 2.84e-26 108
Msa0400030 MtrunA17_Chr7g0238631 50.000 106 52 1 21 126 110 214 5.12e-26 108
Msa0400030 MtrunA17_Chr5g0417621 42.149 121 69 1 11 131 121 240 1.86e-25 106
Msa0400030 MtrunA17_Chr5g0437321 51.515 99 47 1 24 122 19 116 2.03e-25 103
Msa0400030 MtrunA17_Chr3g0139671 49.057 106 53 1 21 126 82 186 2.66e-25 107
Msa0400030 MtrunA17_Chr5g0434901 60.294 68 27 0 56 123 7 74 1.14e-24 96.7
Msa0400030 MtrunA17_Chr7g0229131 39.456 147 77 4 54 197 4 141 1.60e-24 98.2
Msa0400030 MtrunA17_Chr7g0229101 60.000 70 28 0 54 123 4 73 2.18e-24 99.0
Msa0400030 MtrunA17_Chr4g0058991 43.925 107 59 1 19 125 204 309 3.17e-24 102
Msa0400030 MtrunA17_Chr6g0480581 47.525 101 52 1 24 124 4 103 3.64e-24 99.0
Msa0400030 MtrunA17_Chr4g0042501 40.336 119 70 1 9 127 90 207 4.77e-23 99.0
Msa0400030 MtrunA17_Chr1g0157731 45.283 106 57 1 21 126 88 192 5.34e-23 100
Msa0400030 MtrunA17_Chr6g0460661 40.541 111 63 2 16 125 8 116 7.52e-23 93.2
Msa0400030 MtrunA17_Chr5g0425591 50.000 82 40 1 23 103 10 91 2.08e-22 90.1
Msa0400030 MtrunA17_Chr6g0460671 41.739 115 65 2 12 125 86 199 2.75e-22 95.9
Msa0400030 MtrunA17_Chr7g0228531 44.037 109 58 3 24 132 220 325 5.09e-22 96.3
Msa0400030 MtrunA17_Chr6g0453751 47.253 91 39 2 22 103 20 110 6.67e-22 89.7
Msa0400030 MtrunA17_Chr5g0397841 46.939 98 51 1 22 119 108 204 9.46e-22 95.9
Msa0400030 MtrunA17_Chr1g0177901 46.809 94 48 2 35 128 5 96 1.52e-21 91.3
Msa0400030 MtrunA17_Chr7g0228401 46.154 104 49 3 35 138 290 386 4.50e-21 94.0
Msa0400030 MtrunA17_Chr3g0093811 49.398 83 39 1 47 126 4 86 9.16e-21 90.1
Msa0400030 MtrunA17_Chr3g0125801 44.762 105 55 2 24 127 16 118 2.43e-19 86.7
Msa0400030 MtrunA17_Chr7g0228481 40.708 113 63 3 24 134 220 330 9.01e-19 86.7
Msa0400030 MtrunA17_Chr7g0254261 42.727 110 61 2 17 125 81 189 3.76e-18 84.3
Msa0400030 MtrunA17_Chr7g0233061 38.095 126 62 5 9 129 171 285 6.98e-18 83.6
Msa0400030 MtrunA17_Chr5g0416341 36.296 135 78 3 27 154 29 162 1.41e-17 83.6
Msa0400030 MtrunA17_Chr7g0238651 38.298 94 56 1 27 118 10 103 4.44e-16 78.2
Msa0400030 MtrunA17_Chr1g0193901 51.515 66 30 2 14 78 4 68 9.65e-16 72.4
Msa0400030 MtrunA17_Chr1g0193891 51.515 66 30 2 14 78 4 68 9.65e-16 72.4
Msa0400030 MtrunA17_Chr1g0193871 51.515 66 30 2 14 78 4 68 9.65e-16 72.4
Msa0400030 MtrunA17_Chr1g0193881 51.515 66 30 2 14 78 4 68 9.65e-16 72.4
Msa0400030 MtrunA17_Chr8g0362231 37.624 101 62 1 27 127 25 124 2.41e-15 76.6
Msa0400030 MtrunA17_Chr5g0434871 58.140 43 18 0 84 126 2 44 4.24e-13 63.9
Msa0400030 MtrunA17_Chr3g0104491 39.474 76 41 2 64 135 2 76 3.08e-12 66.2
Msa0400030 MtrunA17_Chr2g0322831 58.537 41 17 0 80 120 34 74 8.10e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0400030 AT3G08500.1 46.281 363 149 12 1 338 1 342 1.00e-79 247
Msa0400030 AT5G12870.1 78.400 125 25 1 3 127 1 123 1.08e-69 219
Msa0400030 AT4G01680.3 77.982 109 24 0 19 127 9 117 2.69e-59 191
Msa0400030 AT4G01680.1 77.982 109 24 0 19 127 9 117 1.33e-58 192
Msa0400030 AT5G26660.1 53.226 186 71 2 19 204 9 178 1.38e-58 193
Msa0400030 AT3G13890.2 74.312 109 28 0 18 126 8 116 2.58e-58 192
Msa0400030 AT1G09540.1 76.147 109 26 0 19 127 9 117 3.04e-58 192
Msa0400030 AT1G57560.1 75.000 108 27 0 19 126 9 116 3.23e-57 188
Msa0400030 AT1G57560.2 75.000 108 27 0 19 126 9 116 3.84e-57 187
Msa0400030 AT1G63910.1 68.182 110 35 0 18 127 8 117 1.98e-55 185
Msa0400030 AT3G13890.1 68.644 118 28 1 18 126 8 125 3.45e-55 184
Msa0400030 AT4G01680.2 70.248 121 24 1 19 127 9 129 4.24e-55 184
Msa0400030 AT3G12720.1 68.519 108 34 0 19 126 19 126 2.69e-52 175
Msa0400030 AT4G05100.1 64.103 117 42 0 10 126 1 117 6.58e-50 169
Msa0400030 AT2G16720.1 66.667 108 36 0 19 126 9 116 1.86e-48 164
Msa0400030 AT4G21440.1 67.593 108 35 0 19 126 9 116 1.97e-48 166
Msa0400030 AT3G48920.1 45.263 190 92 2 18 195 14 203 4.53e-48 162
Msa0400030 AT5G54230.1 67.619 105 34 0 22 126 12 116 6.30e-48 164
Msa0400030 AT4G38620.1 45.213 188 85 5 19 203 9 181 7.88e-48 163
Msa0400030 AT4G34990.1 59.350 123 49 1 24 145 14 136 1.09e-47 162
Msa0400030 AT1G22640.1 51.389 144 66 1 19 162 9 148 1.18e-47 161
Msa0400030 AT5G10280.1 65.421 107 37 0 20 126 10 116 5.49e-47 162
Msa0400030 AT3G01140.2 64.220 109 39 0 18 126 8 116 6.18e-47 162
Msa0400030 AT4G28110.1 63.303 109 40 0 18 126 8 116 8.30e-47 160
Msa0400030 AT5G15310.4 53.472 144 62 2 22 164 12 151 1.69e-46 158
Msa0400030 AT5G65230.1 62.385 109 41 0 18 126 8 116 2.08e-46 160
Msa0400030 AT4G12350.1 57.812 128 53 1 18 144 8 135 2.14e-46 159
Msa0400030 AT3G01140.1 64.220 109 39 0 18 126 51 159 2.34e-46 162
Msa0400030 AT4G09460.1 62.037 108 41 0 19 126 9 116 2.55e-46 157
Msa0400030 AT5G52600.1 55.385 130 57 1 19 147 9 138 2.89e-46 156
Msa0400030 AT5G15310.2 52.703 148 65 2 18 164 8 151 3.01e-46 159
Msa0400030 AT5G15310.1 52.703 148 65 2 18 164 8 151 3.17e-46 160
Msa0400030 AT5G60890.1 61.321 106 41 0 22 127 12 117 3.31e-46 159
Msa0400030 AT3G61250.1 64.220 109 39 0 18 126 8 116 3.56e-46 159
Msa0400030 AT5G14750.1 47.126 174 75 4 3 165 1 168 4.10e-46 155
Msa0400030 AT2G31180.1 62.281 114 43 0 19 132 9 122 4.17e-46 157
Msa0400030 AT5G56110.1 63.889 108 39 0 19 126 9 116 1.76e-45 158
Msa0400030 AT1G74430.1 65.714 105 36 0 22 126 12 116 1.86e-45 156
Msa0400030 AT3G02940.2 59.633 109 44 0 18 126 8 116 2.10e-45 157
Msa0400030 AT5G40330.1 40.191 209 114 4 23 222 13 219 2.17e-45 154
Msa0400030 AT4G25560.1 67.961 103 33 0 23 125 11 113 3.60e-45 156
Msa0400030 AT3G02940.1 59.633 109 44 0 18 126 8 116 4.04e-45 157
Msa0400030 AT3G02940.3 59.633 109 44 0 18 126 8 116 4.04e-45 157
Msa0400030 AT1G34670.1 64.762 105 37 0 22 126 12 116 4.12e-45 158
Msa0400030 AT3G23250.1 45.402 174 92 2 19 192 9 179 8.33e-45 155
Msa0400030 AT5G52260.1 59.375 128 45 1 19 139 9 136 1.24e-44 154
Msa0400030 AT5G35550.1 46.369 179 92 2 10 187 1 176 1.71e-44 153
Msa0400030 AT1G56160.1 46.512 172 84 1 18 189 10 173 2.58e-44 154
Msa0400030 AT1G66230.1 60.909 110 43 0 18 127 8 117 4.73e-44 153
Msa0400030 AT4G22680.1 53.571 140 62 2 18 156 8 145 6.00e-44 152
Msa0400030 AT5G16770.4 60.952 105 41 0 22 126 12 116 1.07e-43 153
Msa0400030 AT5G16770.3 60.952 105 41 0 22 126 12 116 1.07e-43 153
Msa0400030 AT1G06180.1 63.889 108 39 0 19 126 9 116 1.39e-43 150
Msa0400030 AT1G35515.1 57.407 108 46 0 19 126 9 116 1.84e-43 149
Msa0400030 AT5G61420.2 61.905 105 40 0 22 126 12 116 2.47e-43 153
Msa0400030 AT5G16770.1 60.952 105 41 0 22 126 12 116 2.56e-43 152
Msa0400030 AT5G16770.2 60.952 105 41 0 22 126 12 116 2.56e-43 152
Msa0400030 AT2G47460.1 61.111 108 42 0 19 126 9 116 2.81e-43 153
Msa0400030 AT5G07700.1 61.905 105 40 0 22 126 12 116 2.83e-43 152
Msa0400030 AT5G07700.2 61.905 105 40 0 22 126 12 116 2.83e-43 152
Msa0400030 AT1G79180.1 46.914 162 83 2 18 176 10 171 4.20e-43 150
Msa0400030 AT5G16600.1 60.000 110 44 0 18 127 8 117 4.43e-43 152
Msa0400030 AT1G18570.1 61.905 105 40 0 22 126 13 117 5.93e-43 152
Msa0400030 AT5G07690.1 61.905 105 40 0 22 126 12 116 8.98e-43 151
Msa0400030 AT1G16490.1 57.018 114 49 0 18 131 10 123 1.77e-42 149
Msa0400030 AT5G49330.1 61.111 108 42 0 19 126 9 116 2.22e-42 150
Msa0400030 AT3G62610.1 59.259 108 44 0 19 126 9 116 2.32e-42 150
Msa0400030 AT3G27920.1 51.220 123 60 0 21 143 13 135 3.26e-42 146
Msa0400030 AT3G13540.1 46.575 146 77 1 18 162 19 164 4.58e-42 147
Msa0400030 AT3G27810.1 49.206 126 64 0 19 144 17 142 4.87e-42 146
Msa0400030 AT4G17785.2 59.048 105 43 0 22 126 13 117 1.32e-41 148
Msa0400030 AT5G62320.1 41.848 184 95 3 10 185 1 180 1.35e-41 145
Msa0400030 AT5G14340.1 51.007 149 70 2 18 165 20 166 1.54e-41 146
Msa0400030 AT4G17785.1 59.048 105 43 0 22 126 13 117 1.75e-41 148
Msa0400030 AT3G28470.1 62.136 103 39 0 18 120 8 110 3.09e-41 146
Msa0400030 AT3G01530.1 54.054 111 51 0 22 132 25 135 3.52e-41 143
Msa0400030 AT1G68320.1 36.190 210 117 4 21 228 18 212 5.68e-41 145
Msa0400030 AT3G24310.1 56.034 116 51 0 23 138 19 134 6.26e-41 144
Msa0400030 AT5G40350.1 49.180 122 62 0 20 141 15 136 6.98e-41 142
Msa0400030 AT4G13480.1 56.757 111 48 0 23 133 7 117 7.37e-41 144
Msa0400030 AT3G30210.1 58.333 108 45 0 23 130 28 135 9.06e-41 144
Msa0400030 AT3G12820.1 58.716 109 45 0 18 126 10 118 1.07e-40 143
Msa0400030 AT3G47600.1 51.128 133 64 1 18 149 8 140 2.11e-40 145
Msa0400030 AT1G08810.1 56.881 109 47 0 18 126 8 116 3.38e-40 143
Msa0400030 AT1G74080.1 60.000 105 42 0 22 126 12 116 3.80e-40 144
Msa0400030 AT2G26960.1 54.386 114 52 0 11 124 9 122 4.36e-40 146
Msa0400030 AT1G18710.1 58.095 105 44 0 22 126 12 116 5.26e-40 142
Msa0400030 AT5G26660.2 50.000 156 62 2 49 204 8 147 7.15e-40 143
Msa0400030 AT5G55020.1 57.547 106 45 0 22 127 26 131 1.25e-39 146
Msa0400030 AT4G26930.1 57.282 103 44 0 22 124 19 121 1.97e-39 144
Msa0400030 AT1G74650.1 57.407 108 46 0 19 126 9 116 2.11e-39 142
Msa0400030 AT3G28910.1 54.310 116 53 0 18 133 8 123 2.37e-39 142
Msa0400030 AT2G32460.1 54.206 107 49 0 22 128 18 124 2.53e-39 145
Msa0400030 AT2G32460.2 54.206 107 49 0 22 128 6 112 2.67e-39 145
Msa0400030 AT5G62470.2 54.386 114 52 0 19 132 9 122 4.65e-39 142
Msa0400030 AT3G11440.2 49.593 123 62 0 6 128 25 147 5.77e-39 144
Msa0400030 AT1G48000.1 57.009 107 46 0 21 127 31 137 1.31e-38 137
Msa0400030 AT5G06100.1 55.140 107 48 0 22 128 32 138 1.37e-38 142
Msa0400030 AT3G49690.1 56.364 110 47 1 18 126 8 117 1.42e-38 139
Msa0400030 AT3G11440.3 49.593 123 62 0 6 128 25 147 2.46e-38 143
Msa0400030 AT3G11440.4 49.593 123 62 0 6 128 25 147 2.46e-38 143
Msa0400030 AT3G11440.1 49.593 123 62 0 6 128 25 147 2.46e-38 143
Msa0400030 AT5G06100.5 55.140 107 48 0 22 128 32 138 3.87e-38 142
Msa0400030 AT5G06100.2 55.140 107 48 0 22 128 32 138 3.87e-38 142
Msa0400030 AT5G06100.3 55.140 107 48 0 22 128 32 138 3.87e-38 142
Msa0400030 AT5G06100.4 55.140 107 48 0 22 128 32 138 3.87e-38 142
Msa0400030 AT2G47190.1 45.695 151 75 2 20 170 18 161 4.93e-38 137
Msa0400030 AT5G23000.1 55.455 110 48 1 18 126 8 117 8.31e-38 138
Msa0400030 AT5G65790.1 55.455 110 48 1 18 126 8 117 9.19e-38 139
Msa0400030 AT1G25340.1 50.820 122 60 0 12 133 8 129 1.07e-37 136
Msa0400030 AT5G57620.1 55.455 110 48 1 18 126 8 117 1.38e-37 137
Msa0400030 AT1G79180.2 43.713 167 59 2 18 149 10 176 1.93e-37 137
Msa0400030 AT5G62470.1 54.386 114 51 1 19 132 9 121 3.01e-37 137
Msa0400030 AT3G06490.1 55.172 116 52 0 12 127 9 124 3.09e-36 133
Msa0400030 AT5G59780.3 48.305 118 61 0 19 136 5 122 1.07e-35 130
Msa0400030 AT3G53200.1 53.211 109 51 0 22 130 9 117 1.19e-35 129
Msa0400030 AT2G36890.1 52.727 110 51 1 18 126 8 117 1.33e-35 131
Msa0400030 AT4G37780.1 37.321 209 116 4 18 215 8 212 1.40e-35 131
Msa0400030 AT3G46130.1 50.877 114 56 0 23 136 10 123 1.49e-35 130
Msa0400030 AT2G36890.2 48.819 127 63 2 1 126 33 158 2.21e-35 132
Msa0400030 AT5G35550.2 42.458 179 92 2 9 187 12 179 5.09e-34 126
Msa0400030 AT1G66370.1 47.015 134 61 2 22 148 8 138 2.70e-33 124
Msa0400030 AT5G49620.1 53.774 106 49 0 22 127 26 131 6.90e-33 124
Msa0400030 AT1G25340.2 48.361 122 58 1 12 133 8 124 7.60e-33 123
Msa0400030 AT1G25340.3 48.361 122 58 1 12 133 8 124 1.55e-32 123
Msa0400030 AT5G14750.3 50.420 119 46 3 58 165 18 134 4.28e-32 118
Msa0400030 AT2G26950.1 47.706 109 56 1 19 127 13 120 2.00e-31 122
Msa0400030 AT3G47600.2 49.573 117 54 2 34 149 22 134 2.72e-31 120
Msa0400030 AT1G66380.1 54.808 104 47 0 22 125 8 111 5.66e-31 114
Msa0400030 AT3G12820.2 72.464 69 19 0 58 126 2 70 1.96e-30 114
Msa0400030 AT3G27810.2 53.333 90 42 0 55 144 4 93 1.99e-30 114
Msa0400030 AT1G56650.1 49.180 122 56 1 22 137 8 129 3.24e-30 115
Msa0400030 AT3G60460.1 48.696 115 58 1 18 131 7 121 5.32e-30 116
Msa0400030 AT1G66390.1 56.190 105 44 2 22 125 8 111 1.62e-29 114
Msa0400030 AT5G49620.2 47.500 120 49 1 22 127 26 145 2.47e-29 115
Msa0400030 AT5G40350.2 52.809 89 42 0 53 141 3 91 2.65e-29 111
Msa0400030 AT3G46130.3 55.422 83 37 0 54 136 9 91 4.54e-29 112
Msa0400030 AT5G59780.2 56.098 82 36 0 55 136 20 101 8.12e-29 111
Msa0400030 AT3G46130.4 56.098 82 36 0 55 136 20 101 9.78e-29 111
Msa0400030 AT5G40360.1 45.833 120 62 3 7 126 142 258 1.79e-28 113
Msa0400030 AT3G53200.2 59.211 76 31 0 55 130 9 84 2.60e-27 107
Msa0400030 AT2G39880.1 52.212 113 52 2 13 125 40 150 3.54e-27 110
Msa0400030 AT4G18770.1 44.628 121 65 2 19 138 212 331 3.80e-27 110
Msa0400030 AT3G27785.1 47.222 108 54 2 19 125 184 289 1.78e-26 109
Msa0400030 AT5G67300.1 50.000 102 50 1 24 125 6 106 2.40e-26 106
Msa0400030 AT3G55730.1 44.595 148 77 3 19 166 52 194 1.15e-25 106
Msa0400030 AT4G37260.1 51.961 102 48 1 24 125 13 113 2.11e-25 104
Msa0400030 AT5G58850.1 39.200 125 75 1 22 146 103 226 2.94e-25 105
Msa0400030 AT3G50060.1 44.715 123 66 2 24 146 6 126 3.88e-25 103
Msa0400030 AT3G09230.1 52.427 103 48 1 24 126 55 156 4.28e-25 104
Msa0400030 AT5G11050.1 40.164 122 71 2 24 144 105 225 5.63e-25 104
Msa0400030 AT5G02320.3 46.729 107 56 1 21 127 64 169 1.29e-24 104
Msa0400030 AT5G02320.1 46.729 107 56 1 21 127 124 229 1.30e-24 104
Msa0400030 AT5G02320.2 46.729 107 56 1 21 127 124 229 1.30e-24 104
Msa0400030 AT1G69560.1 39.516 124 72 2 5 127 88 209 3.26e-24 101
Msa0400030 AT3G09370.2 49.038 104 52 1 22 125 133 235 3.34e-24 103
Msa0400030 AT3G09370.1 49.038 104 52 1 22 125 128 230 3.42e-24 103
Msa0400030 AT1G69560.2 39.516 124 72 2 5 127 104 225 4.14e-24 101
Msa0400030 AT3G09370.3 49.038 104 52 1 22 125 141 243 4.44e-24 103
Msa0400030 AT5G11510.3 47.170 106 55 1 21 126 78 182 9.20e-24 102
Msa0400030 AT5G11510.1 47.170 106 55 1 21 126 78 182 9.20e-24 102
Msa0400030 AT5G11510.4 47.170 106 55 1 21 126 78 182 9.20e-24 102
Msa0400030 AT2G25230.1 40.496 121 69 2 17 137 19 136 9.91e-24 98.2
Msa0400030 AT5G11510.5 47.170 106 55 1 21 126 78 182 1.01e-23 102
Msa0400030 AT5G11510.2 47.170 106 55 1 21 126 78 182 1.10e-23 102
Msa0400030 AT1G22640.3 69.492 59 18 0 68 126 1 59 1.74e-23 96.7
Msa0400030 AT3G23250.2 43.200 125 68 2 68 192 1 122 1.91e-23 97.1
Msa0400030 AT2G23290.1 49.020 102 51 1 24 125 13 113 3.87e-23 98.2
Msa0400030 AT1G66380.3 61.111 72 28 0 54 125 7 78 5.92e-23 92.0
Msa0400030 AT1G17950.1 47.059 102 53 1 24 125 5 105 7.30e-23 95.9
Msa0400030 AT5G14750.4 45.872 109 46 3 68 165 1 107 9.85e-23 92.8
Msa0400030 AT5G14750.2 45.872 109 46 3 68 165 1 107 9.85e-23 92.8
Msa0400030 AT1G26780.1 42.342 111 61 2 22 131 96 204 3.76e-22 94.7
Msa0400030 AT1G26780.2 43.925 107 57 2 22 127 96 200 4.29e-22 95.9
Msa0400030 AT4G33450.1 36.090 133 84 1 7 139 2 133 1.73e-21 92.4
Msa0400030 AT4G32730.5 43.396 106 59 1 21 126 84 188 2.07e-21 95.9
Msa0400030 AT4G32730.4 43.396 106 59 1 21 126 84 188 2.07e-21 95.9
Msa0400030 AT4G32730.3 43.396 106 59 1 21 126 84 188 2.07e-21 95.9
Msa0400030 AT4G32730.2 43.396 106 59 1 21 126 84 188 2.07e-21 95.9
Msa0400030 AT4G32730.1 43.396 106 59 1 21 126 84 188 2.18e-21 95.9
Msa0400030 AT5G17800.1 35.036 137 87 2 12 147 81 216 2.10e-20 90.5
Msa0400030 AT1G73410.1 46.154 104 55 1 24 127 6 108 2.53e-20 89.0
Msa0400030 AT2G02820.3 41.584 101 58 1 27 127 33 132 4.44e-20 89.7
Msa0400030 AT2G02820.1 41.584 101 58 1 27 127 33 132 5.10e-20 90.9
Msa0400030 AT1G71030.2 56.061 66 29 0 61 126 5 70 5.22e-20 86.7
Msa0400030 AT1G73410.2 46.154 104 55 1 24 127 6 108 7.03e-20 86.7
Msa0400030 AT1G71030.1 56.061 66 29 0 61 126 19 84 7.23e-20 86.7
Msa0400030 AT3G29020.1 33.846 130 85 1 24 153 65 193 7.27e-20 87.4
Msa0400030 AT2G02820.2 41.584 101 58 1 27 127 33 132 7.62e-20 90.5
Msa0400030 AT3G29020.2 33.846 130 85 1 24 153 67 195 1.67e-19 87.8
Msa0400030 AT1G18960.1 42.857 105 53 4 24 126 10 109 1.82e-19 87.8
Msa0400030 AT5G40430.1 36.937 111 67 3 17 127 47 154 2.68e-19 86.3
Msa0400030 AT4G00540.2 41.284 109 60 2 22 127 101 208 1.20e-18 86.7
Msa0400030 AT4G00540.1 41.284 109 60 2 22 127 99 206 2.06e-18 86.3
Msa0400030 AT1G66380.2 50.633 79 39 0 22 100 8 86 7.14e-18 78.6
Msa0400030 AT1G14350.2 40.594 101 59 1 27 127 28 127 1.39e-17 83.6
Msa0400030 AT1G14350.1 40.594 101 59 1 27 127 28 127 1.39e-17 83.6
Msa0400030 AT5G39700.1 33.884 121 79 1 19 139 51 170 8.75e-15 72.4
Msa0400030 AT2G37630.1 38.947 95 56 1 27 119 7 101 9.92e-15 74.7
Msa0400030 AT4G25560.2 71.111 45 13 0 81 125 3 47 1.87e-14 72.0
Msa0400030 AT5G59780.1 47.368 57 30 0 80 136 1 57 4.05e-14 70.1
Msa0400030 AT3G46130.2 48.214 56 29 0 81 136 2 57 7.74e-14 69.7
Msa0400030 AT1G14350.3 46.774 62 33 0 66 127 23 84 9.58e-13 68.9
Msa0400030 AT1G14350.4 46.774 62 33 0 66 127 23 84 9.58e-13 68.9
Msa0400030 AT3G28910.2 55.319 47 21 0 87 133 1 47 1.85e-11 63.9
Msa0400030 AT1G74650.3 62.500 40 15 0 87 126 1 40 2.76e-11 63.5

Find 139 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATTATAATCACCAATT+AGG 0.155481 3_2:-23900261 None:intergenic
ACTTGTCTTTGTTTATATTT+TGG 0.168716 3_2:-23901115 None:intergenic
GGCAATATCGTTGATGATAT+TGG 0.177881 3_2:+23900127 Msa0400030:CDS
ATTAGTTCTTGTTCATTAAT+TGG 0.192848 3_2:-23899929 None:intergenic
TAGTGATGATTATGGGATTT+TGG 0.233974 3_2:+23900156 Msa0400030:CDS
TAGAAAGTCTAAGAGAAAAT+TGG 0.237860 3_2:-23900952 None:intergenic
ACATTTGTGTATATGCAAAT+TGG 0.244524 3_2:-23901017 None:intergenic
ATTCATTTCCACTCCATTCT+TGG 0.254594 3_2:+23898127 Msa0400030:CDS
GGGCTTCATAGTGATGATTA+TGG 0.261414 3_2:+23900148 Msa0400030:CDS
CACATTATAATCACCAATTA+GGG 0.286005 3_2:-23900260 None:intergenic
GCAATATCGTTGATGATATT+GGG 0.291587 3_2:+23900128 Msa0400030:CDS
CCTCTGATCTCTCTCTAAAT+TGG 0.292372 3_2:+23900510 Msa0400030:three_prime_UTR
TAAAATACCTTATGGAATCT+TGG 0.317280 3_2:+23901063 Msa0400030:three_prime_UTR
TAGATTAATCTAATGGCTAT+AGG 0.317469 3_2:+23900750 Msa0400030:three_prime_UTR
ATTTCTCTGTTTGAATTTAA+CGG 0.322359 3_2:+23900594 Msa0400030:three_prime_UTR
GAAATCAAGAGGAGGAAAAT+AGG 0.323976 3_2:-23900437 None:intergenic
AACTCCAATGAGGACTTGTT+TGG 0.324640 3_2:+23900340 Msa0400030:CDS
TATTATTGAAGTGGTTGTTA+TGG 0.328348 3_2:-23900288 None:intergenic
TTATTAGACAACAAGGAAAA+TGG 0.334913 3_2:-23900043 None:intergenic
CAGGTAGACGTGCTGCAATT+TGG 0.342428 3_2:-23899751 None:intergenic
AGGTAGACGTGCTGCAATTT+GGG 0.345262 3_2:-23899750 None:intergenic
GGCTTCATAGTGATGATTAT+GGG 0.357696 3_2:+23900149 Msa0400030:CDS
TATCTACCACAACATACAAT+TGG 0.357750 3_2:-23901209 None:intergenic
AATGAGGACTTGTTTGGGTT+TGG 0.361066 3_2:+23900346 Msa0400030:CDS
TCCACTCCATTCTTGGCAAC+AGG 0.366668 3_2:+23898134 Msa0400030:CDS
TTTCTCCTTGAATATCTTTG+TGG 0.371969 3_2:+23900676 Msa0400030:three_prime_UTR
TGGAGTAGAGTTGTTGTTGT+TGG 0.373139 3_2:-23899834 None:intergenic
AAGAATGGGAGAATGGGATT+TGG 0.378844 3_2:+23900393 Msa0400030:CDS
GAAGATAAGAGTGCCCTAAT+TGG 0.381814 3_2:+23900247 Msa0400030:CDS
CTACAGCCGGCTGCACCTTA+AGG 0.383201 3_2:-23900548 None:intergenic
AAAATTCTTTATTTCATTGT+CGG 0.387116 3_2:-23899780 None:intergenic
CAGAGGGGACAAGGGGTGAT+TGG 0.388262 3_2:-23900493 None:intergenic
TGCATTCTTTGTGCCCTTGT+GGG 0.388916 3_2:+23901296 Msa0400030:three_prime_UTR
TTGTTTGGGTTTGGAAGTCA+TGG 0.392597 3_2:+23900355 Msa0400030:CDS
GTGAAGATTAAGAGAAATCA+AGG 0.400765 3_2:-23900921 None:intergenic
ACTCCAATGAGGACTTGTTT+GGG 0.403680 3_2:+23900341 Msa0400030:CDS
ACAAGGAAAATGGATCAAAT+TGG 0.406250 3_2:-23900033 None:intergenic
AAAATACCTTATGGAATCTT+GGG 0.410847 3_2:+23901064 Msa0400030:three_prime_UTR
TCCGAAGTGTCACTGTTGTT+TGG 0.430031 3_2:-23899860 None:intergenic
AAAACTTAAGAATGGGAGAA+TGG 0.437647 3_2:+23900386 Msa0400030:CDS
AATTTAACGGTACGTACAAC+CGG 0.438874 3_2:+23900607 Msa0400030:three_prime_UTR
CAAAGATATTCAAGGAGAAA+AGG 0.439458 3_2:-23900673 None:intergenic
TAACTAAAGGACAAGGTTGT+TGG 0.440286 3_2:+23897981 Msa0400030:CDS
TCTTATGAAGAAGCACTTTG+AGG 0.443236 3_2:-23897778 None:intergenic
GCAAGCTAAGGAAAGGGTTA+TGG 0.448835 3_2:+23897921 Msa0400030:CDS
AATGTACCTGTTGCCAAGAA+TGG 0.449357 3_2:-23898140 None:intergenic
AAACTTAAGAATGGGAGAAT+GGG 0.456783 3_2:+23900387 Msa0400030:CDS
AATAGTTGTTTAACACAAGT+TGG 0.457134 3_2:+23900106 Msa0400030:CDS
GAACTAAAGACAAGAAAGAA+TGG 0.462003 3_2:-23901090 None:intergenic
AAACCCAAACAAGTCCTCAT+TGG 0.462806 3_2:-23900344 None:intergenic
CTCTCTCTCTAATGCAAATG+AGG 0.464940 3_2:+23897852 Msa0400030:exon
GAGGAAACCTGATTTGATCA+TGG 0.466267 3_2:+23897871 Msa0400030:CDS
GTGTATACATAGTCTTGCTT+CGG 0.472005 3_2:+23901266 Msa0400030:three_prime_UTR
GTAAAAGTTGCCGTCTTCGT+TGG 0.474947 3_2:+23898041 Msa0400030:CDS
ACCAACTTCTCATCTTCCTC+AGG 0.478429 3_2:-23897947 None:intergenic
ATGCTAATTCTACTTTCTAG+TGG 0.482535 3_2:-23900223 None:intergenic
GAGAGAGATCAGAGGGGACA+AGG 0.483920 3_2:-23900502 None:intergenic
GAAAATGGATCAAATTGGTC+AGG 0.485864 3_2:-23900028 None:intergenic
AAGGTGACTAAAATACCTTA+TGG 0.487741 3_2:+23901055 Msa0400030:three_prime_UTR
GATTTCCACAAAGATATTCA+AGG 0.489134 3_2:-23900681 None:intergenic
ATACTCTACAACGAACCTTA+AGG 0.489425 3_2:+23900533 Msa0400030:three_prime_UTR
AATGGGAGAATGGGATTTGG+AGG 0.489531 3_2:+23900396 Msa0400030:CDS
TTCAAATGAAATGTGAATAG+TGG 0.489585 3_2:+23901390 Msa0400030:three_prime_UTR
AGAGATAGAAAGACTTTGAA+AGG 0.490896 3_2:-23900863 None:intergenic
ATCTACCACAACATACAATT+GGG 0.496280 3_2:-23901208 None:intergenic
TGAAGCAACTATTATTGAAG+TGG 0.497587 3_2:-23900297 None:intergenic
ACATATATGTATGAAACAAA+AGG 0.497809 3_2:-23901138 None:intergenic
AATGCGCCGCGCTTAAGATC+AGG 0.500512 3_2:-23898079 None:intergenic
CAAATTGCAGCACGTCTACC+TGG 0.503672 3_2:+23899752 Msa0400030:CDS
CAAAAGAGGCAAATAAATGT+AGG 0.507043 3_2:+23901427 Msa0400030:three_prime_UTR
GCAAGGAGAAAACTTAAGAA+TGG 0.509485 3_2:+23900378 Msa0400030:CDS
TTGCATTCTTTGTGCCCTTG+TGG 0.514381 3_2:+23901295 Msa0400030:three_prime_UTR
ATAGAGGACGAGATCCTCTT+CGG 0.515443 3_2:-23900834 None:intergenic
TCCAAGTCAATGTCTTCTCA+TGG 0.517738 3_2:+23900981 Msa0400030:three_prime_UTR
CAATTTAGAGAGAGATCAGA+GGG 0.520054 3_2:-23900509 None:intergenic
AGAGAGATCAGAGGGGACAA+GGG 0.521321 3_2:-23900501 None:intergenic
AGGAAACCTGATTTGATCAT+GGG 0.522620 3_2:+23897872 Msa0400030:CDS
AGTGACATTGCTAGGAATGC+TGG 0.522915 3_2:+23898004 Msa0400030:CDS
AACTAAAGACAAGAAAGAAT+GGG 0.525033 3_2:-23901089 None:intergenic
CTTTGAAAGGATTGTCATAG+AGG 0.528220 3_2:-23900850 None:intergenic
CAAGGAGAAAACTTAAGAAT+GGG 0.528613 3_2:+23900379 Msa0400030:CDS
ATGAGAAGACATTGACTTGG+AGG 0.530705 3_2:-23900979 None:intergenic
CAGGTATAGTTGTCTACAGC+CGG 0.536191 3_2:-23900561 None:intergenic
AACAAGAGCAAGCTAAGGAA+AGG 0.537747 3_2:+23897914 Msa0400030:CDS
GTGTCACTGTTGTTTGGAGA+TGG 0.538069 3_2:-23899854 None:intergenic
GTTGTTGGAGTGACATTGCT+AGG 0.540759 3_2:+23897996 Msa0400030:CDS
GTAAGATACATGATAACTAA+AGG 0.545634 3_2:+23897968 Msa0400030:CDS
CTAGGAATGCTGGTCTTCAA+AGG 0.546339 3_2:+23898014 Msa0400030:CDS
ACCTGAGGAAGATGAGAAGT+TGG 0.546873 3_2:+23897946 Msa0400030:CDS
TACAACCCAATTGTATGTTG+TGG 0.547350 3_2:+23901203 Msa0400030:three_prime_UTR
AATGAAAAGACAATTAAACT+TGG 0.554955 3_2:-23900459 None:intergenic
ACAAGAGCAAGCTAAGGAAA+GGG 0.557354 3_2:+23897915 Msa0400030:CDS
ATTACACAAAGTGCTTTACA+AGG 0.561207 3_2:-23901322 None:intergenic
ATTCATCTTTACAATGCAGC+CGG 0.565105 3_2:-23900626 None:intergenic
ATGGGAGAATGGGATTTGGA+GGG 0.566954 3_2:+23900397 Msa0400030:CDS
ATGCATGTGCATGGATTGCA+TGG 0.568158 3_2:-23899993 None:intergenic
AGTAATTAATCCAACGAAGA+CGG 0.569053 3_2:-23898051 None:intergenic
TGGGTGCCCAAGATTCCATA+AGG 0.570181 3_2:-23901070 None:intergenic
GGGTTTGGAAGTCATGGGCA+AGG 0.571571 3_2:+23900361 Msa0400030:CDS
AACGAACCTTAAGGTGCAGC+CGG 0.573342 3_2:+23900542 Msa0400030:three_prime_UTR
AGAACTAATGACATTATGCA+TGG 0.576802 3_2:+23899943 Msa0400030:CDS
GGAAACTTGTCATGTCATAA+CGG 0.578159 3_2:-23900066 None:intergenic
CTAATTCTACTTTCTAGTGG+AGG 0.578837 3_2:-23900220 None:intergenic
ACCATGAGAAGACATTGACT+TGG 0.579728 3_2:-23900982 None:intergenic
TTCAAGGAGAAAAGGAAGAG+TGG 0.581796 3_2:-23900665 None:intergenic
ATTTCATTGTCGGTACGACC+AGG 0.583529 3_2:-23899770 None:intergenic
AACCATGGTATGCATGTGCA+TGG 0.586474 3_2:-23900002 None:intergenic
TCCAAACAACAGTGACACTT+CGG 0.586789 3_2:+23899859 Msa0400030:CDS
ATGTCTTCAATCAATATGCA+AGG 0.592778 3_2:+23901036 Msa0400030:three_prime_UTR
ATGATGAGTTCTTCCTCTTG+TGG 0.593884 3_2:-23898106 None:intergenic
TCATTTAGAAATGTCAAAAG+AGG 0.599559 3_2:+23901413 Msa0400030:three_prime_UTR
TGTTTGGGTTTGGAAGTCAT+GGG 0.599593 3_2:+23900356 Msa0400030:CDS
GAGAGATCAGAGGGGACAAG+GGG 0.603225 3_2:-23900500 None:intergenic
TTAGCAGTGTTTATAGCACT+AGG 0.605228 3_2:+23901467 Msa0400030:three_prime_UTR
TAGGTAATACTATACACCGT+TGG 0.605293 3_2:+23900769 Msa0400030:three_prime_UTR
TATTTGACATGTCATGAGCA+TGG 0.605554 3_2:-23900087 None:intergenic
CAATTGTTGAATTAATCCAA+CGG 0.606586 3_2:-23900785 None:intergenic
CCAATTTAGAGAGAGATCAG+AGG 0.607332 3_2:-23900510 None:intergenic
AAAAGGTAGATGGGCCGAAG+AGG 0.611350 3_2:+23900820 Msa0400030:three_prime_UTR
TGATGATGAAGTTGATGATG+AGG 0.619533 3_2:-23899969 None:intergenic
AATTAAACTTGGAAATCAAG+AGG 0.628285 3_2:-23900448 None:intergenic
ACATTAACAAGAGCAAGCTA+AGG 0.643937 3_2:+23897909 Msa0400030:CDS
CATTGTAAAGATGAATGTAG+AGG 0.647469 3_2:+23900633 Msa0400030:three_prime_UTR
GCTTTACAAGGAAACCCACA+AGG 0.648903 3_2:-23901310 None:intergenic
AATGCTGGTCTTCAAAGGTG+TGG 0.659770 3_2:+23898019 Msa0400030:CDS
ATCCATGCACATGCATACCA+TGG 0.661611 3_2:+23900000 Msa0400030:CDS
TTGAGACCTGATCTTAAGCG+CGG 0.663731 3_2:+23898073 Msa0400030:CDS
TCACATTCAAAACTCCAATG+AGG 0.667734 3_2:+23900330 Msa0400030:CDS
AGGTTGGTACAAATAATCAA+AGG 0.668289 3_2:+23901357 Msa0400030:three_prime_UTR
ACCTGTTGCCAAGAATGGAG+TGG 0.673651 3_2:-23898135 None:intergenic
TAAACTTGGAAATCAAGAGG+AGG 0.676931 3_2:-23900445 None:intergenic
GAAAGGGTTATGGTCACCTG+AGG 0.691016 3_2:+23897931 Msa0400030:CDS
TACATGATAACTAAAGGACA+AGG 0.707656 3_2:+23897974 Msa0400030:CDS
ATAACGGTTATTAGACAACA+AGG 0.710003 3_2:-23900050 None:intergenic
AAATTGGTCAGGTAAAACCA+TGG 0.714456 3_2:-23900017 None:intergenic
GGAAGTAAGAGGGGTCATAG+CGG 0.749256 3_2:-23900708 None:intergenic
TTATAGCACTAGGAACAATG+TGG 0.760025 3_2:+23901477 Msa0400030:three_prime_UTR
CTTTACAAGGAAACCCACAA+GGG 0.761370 3_2:-23901309 None:intergenic
AATTTAGAGAGAGATCAGAG+GGG 0.794291 3_2:-23900508 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTATATATTTTTTTTT+TGG + chr3_2:23898642-23898661 Msa0400030:intron 0.0%
!!! AAATATTTTAAAAAAATTAA+GGG - chr3_2:23898921-23898940 None:intergenic 0.0%
!!! AAAATATTTTAAAAAAATTA+AGG - chr3_2:23898922-23898941 None:intergenic 0.0%
!!! TTTTTTAAAATATTTTAATT+AGG + chr3_2:23898926-23898945 Msa0400030:intron 0.0%
!! TATATACATATAGAATAATT+TGG + chr3_2:23899053-23899072 Msa0400030:intron 10.0%
!! CTCAAAAAAAAAAAAAAAAT+TGG - chr3_2:23899122-23899141 None:intergenic 10.0%
!!! CAATTTTTTTTTTTTTTTTG+AGG + chr3_2:23899120-23899139 Msa0400030:intron 10.0%
!! AAAGTGAATTAAAAAAATAT+AGG - chr3_2:23899346-23899365 None:intergenic 10.0%
!!! TATTTATTATTACATCTTTT+GGG - chr3_2:23899395-23899414 None:intergenic 10.0%
!!! TTATTTATTATTACATCTTT+TGG - chr3_2:23899396-23899415 None:intergenic 10.0%
!! GTTATTCAAAAAAACAATTA+CGG - chr3_2:23898275-23898294 None:intergenic 15.0%
!!! ATATTTTTTTTATCTCTCAA+AGG - chr3_2:23898445-23898464 None:intergenic 15.0%
!! TTATAACTTCTTGATTAATA+AGG - chr3_2:23898539-23898558 None:intergenic 15.0%
!!! ATATTCATTTTGTTATTGAA+TGG - chr3_2:23898573-23898592 None:intergenic 15.0%
!! TTGAAATTTGATTGAAAATA+GGG + chr3_2:23899090-23899109 Msa0400030:intron 15.0%
!! TCAAATAAAGTTGTTAAAAA+AGG + chr3_2:23899441-23899460 Msa0400030:intron 15.0%
!! ATTAAATTAAAAATCGTAAC+TGG - chr3_2:23899509-23899528 None:intergenic 15.0%
!! TCATGTTACAAAAAATTATA+AGG + chr3_2:23899538-23899557 Msa0400030:intron 15.0%
!! AAATTATAAGGAAATATTGA+AGG + chr3_2:23899550-23899569 Msa0400030:intron 15.0%
!! AATAATTTATAAGTTTAGAG+TGG + chr3_2:23899589-23899608 Msa0400030:intron 15.0%
!!! AGTGTAACTTTTTTTTTATA+TGG + chr3_2:23899653-23899672 Msa0400030:intron 15.0%
!!! AAAATTCTTTATTTCATTGT+CGG - chr3_2:23899783-23899802 None:intergenic 15.0%
!!! ACAATGAAATAAAGAATTTT+TGG + chr3_2:23899783-23899802 Msa0400030:CDS 15.0%
!!! AATTGAAATTTTGCTATAAA+AGG + chr3_2:23900803-23900822 Msa0400030:three_prime_UTR 15.0%
!!! TGAATTATGGTTTTAAATTG+TGG - chr3_2:23898312-23898331 None:intergenic 20.0%
!! TTTCAAAAAACAAATCTTGA+AGG + chr3_2:23898371-23898390 Msa0400030:intron 20.0%
!! TTCAAAAAACAAATCTTGAA+GGG + chr3_2:23898372-23898391 Msa0400030:intron 20.0%
!! TATCAATTTCAGTAAAACAA+TGG - chr3_2:23898481-23898500 None:intergenic 20.0%
!!! TTGCTTGAATACTTTTTTAT+TGG - chr3_2:23898624-23898643 None:intergenic 20.0%
!! ATAAATCTTAAGATCTTAGT+GGG - chr3_2:23899030-23899049 None:intergenic 20.0%
!! TATAAATCTTAAGATCTTAG+TGG - chr3_2:23899031-23899050 None:intergenic 20.0%
!! GTTGAAATTTGATTGAAAAT+AGG + chr3_2:23899089-23899108 Msa0400030:intron 20.0%
!!! TTTTTTTTTTTTTTGAGGGA+AGG + chr3_2:23899125-23899144 Msa0400030:intron 20.0%
!!! TTTTTTTTTTTTTGAGGGAA+GGG + chr3_2:23899126-23899145 Msa0400030:intron 20.0%
!! TCACTTTGATATTTATTTGA+TGG + chr3_2:23899359-23899378 Msa0400030:intron 20.0%
!! AAATGCTAATAATTGAAGAA+GGG - chr3_2:23899622-23899641 None:intergenic 20.0%
!!! TTAATAAGTGTAACCTATTT+TGG + chr3_2:23899676-23899695 Msa0400030:intron 20.0%
!! AAAGAAGAAAAATCCAAAAT+AGG - chr3_2:23899692-23899711 None:intergenic 20.0%
!!! ATTTTGGATTTTTCTTCTTT+CGG + chr3_2:23899692-23899711 Msa0400030:intron 20.0%
!! ACATCAAAAACATTATCTAT+TGG - chr3_2:23899890-23899909 None:intergenic 20.0%
!!! ATTAGTTCTTGTTCATTAAT+TGG - chr3_2:23899932-23899951 None:intergenic 20.0%
!! AATGAAAAGACAATTAAACT+TGG - chr3_2:23900462-23900481 None:intergenic 20.0%
!! ATTTCTCTGTTTGAATTTAA+CGG + chr3_2:23900594-23900613 Msa0400030:three_prime_UTR 20.0%
!!! ACTTGTCTTTGTTTATATTT+TGG - chr3_2:23901118-23901137 None:intergenic 20.0%
!! ACATATATGTATGAAACAAA+AGG - chr3_2:23901141-23901160 None:intergenic 20.0%
!!! GTTTGTTATATTTTAGTGTT+AGG + chr3_2:23901508-23901527 Msa0400030:three_prime_UTR 20.0%
! GTAAGATACATGATAACTAA+AGG + chr3_2:23897968-23897987 Msa0400030:CDS 25.0%
!! TATTTTCATATTTGAACCCT+AGG + chr3_2:23898205-23898224 Msa0400030:intron 25.0%
! TCAAAAAACAAATCTTGAAG+GGG + chr3_2:23898373-23898392 Msa0400030:intron 25.0%
!!! TTCTCATTTTTTTGAGAGAA+GGG - chr3_2:23898785-23898804 None:intergenic 25.0%
!! CAGATTCTAAACCTTTTAAA+GGG + chr3_2:23898888-23898907 Msa0400030:intron 25.0%
! ATGTAAGTTAAACTTTCATC+TGG - chr3_2:23898962-23898981 None:intergenic 25.0%
! TAAATCTTAAGATCTTAGTG+GGG - chr3_2:23899029-23899048 None:intergenic 25.0%
! ATTTGATTGAAAATAGGGTT+TGG + chr3_2:23899095-23899114 Msa0400030:intron 25.0%
! ATTAAAAATCGTAACTGGTT+AGG - chr3_2:23899504-23899523 None:intergenic 25.0%
! GAAATGCTAATAATTGAAGA+AGG - chr3_2:23899623-23899642 None:intergenic 25.0%
! TTACTATAAACAATCTCAGA+TGG + chr3_2:23899726-23899745 Msa0400030:intron 25.0%
! TTATTAGACAACAAGGAAAA+TGG - chr3_2:23900046-23900065 None:intergenic 25.0%
! AATAGTTGTTTAACACAAGT+TGG + chr3_2:23900106-23900125 Msa0400030:CDS 25.0%
!!! ATTTTGGAGGCTAATAAAAT+GGG + chr3_2:23900172-23900191 Msa0400030:CDS 25.0%
! CACATTATAATCACCAATTA+GGG - chr3_2:23900263-23900282 None:intergenic 25.0%
! TCACATTATAATCACCAATT+AGG - chr3_2:23900264-23900283 None:intergenic 25.0%
! TATTATTGAAGTGGTTGTTA+TGG - chr3_2:23900291-23900310 None:intergenic 25.0%
! AATTAAACTTGGAAATCAAG+AGG - chr3_2:23900451-23900470 None:intergenic 25.0%
!! CAGCTTTTAGATTAATCTAA+TGG + chr3_2:23900743-23900762 Msa0400030:three_prime_UTR 25.0%
! TAGATTAATCTAATGGCTAT+AGG + chr3_2:23900750-23900769 Msa0400030:three_prime_UTR 25.0%
! CAATTGTTGAATTAATCCAA+CGG - chr3_2:23900788-23900807 None:intergenic 25.0%
!!! ATTTTGCTATAAAAGGTAGA+TGG + chr3_2:23900810-23900829 Msa0400030:three_prime_UTR 25.0%
!!! TTTTGCTATAAAAGGTAGAT+GGG + chr3_2:23900811-23900830 Msa0400030:three_prime_UTR 25.0%
! TAGAAAGTCTAAGAGAAAAT+TGG - chr3_2:23900955-23900974 None:intergenic 25.0%
! ACATTTGTGTATATGCAAAT+TGG - chr3_2:23901020-23901039 None:intergenic 25.0%
! TAAAATACCTTATGGAATCT+TGG + chr3_2:23901063-23901082 Msa0400030:three_prime_UTR 25.0%
! AAAATACCTTATGGAATCTT+GGG + chr3_2:23901064-23901083 Msa0400030:three_prime_UTR 25.0%
! AACTAAAGACAAGAAAGAAT+GGG - chr3_2:23901092-23901111 None:intergenic 25.0%
!!! ACATTCATTGTTTCTTTTCT+TGG + chr3_2:23901170-23901189 Msa0400030:three_prime_UTR 25.0%
!!! TAGTTTTGCAATGAAAATTG+CGG + chr3_2:23901240-23901259 Msa0400030:three_prime_UTR 25.0%
!! AAGCACTTTGTGTAATTTTT+CGG + chr3_2:23901329-23901348 Msa0400030:three_prime_UTR 25.0%
! TTCAAATGAAATGTGAATAG+TGG + chr3_2:23901390-23901409 Msa0400030:three_prime_UTR 25.0%
! TCATTTAGAAATGTCAAAAG+AGG + chr3_2:23901413-23901432 Msa0400030:three_prime_UTR 25.0%
!!! ATTTTAGTGTTAGGTGATAT+AGG + chr3_2:23901517-23901536 Msa0400030:three_prime_UTR 25.0%
TACATGATAACTAAAGGACA+AGG + chr3_2:23897974-23897993 Msa0400030:CDS 30.0%
AGTAATTAATCCAACGAAGA+CGG - chr3_2:23898054-23898073 None:intergenic 30.0%
!!! CTTCTCATTTTTTTGAGAGA+AGG - chr3_2:23898786-23898805 None:intergenic 30.0%
ATCCTAAAATGTAACCAATC+TGG + chr3_2:23898808-23898827 Msa0400030:intron 30.0%
! GCAGATTCTAAACCTTTTAA+AGG + chr3_2:23898887-23898906 Msa0400030:intron 30.0%
AAATCTTAAGATCTTAGTGG+GGG - chr3_2:23899028-23899047 None:intergenic 30.0%
TAATATGTAACACAGACAGT+TGG - chr3_2:23899158-23899177 None:intergenic 30.0%
!! TCATAAAGCATCGATTATTG+AGG + chr3_2:23899282-23899301 Msa0400030:intron 30.0%
! TTTCAATCTTTTCTTCAGTG+TGG - chr3_2:23899813-23899832 None:intergenic 30.0%
AGAACTAATGACATTATGCA+TGG + chr3_2:23899943-23899962 Msa0400030:CDS 30.0%
ACAAGGAAAATGGATCAAAT+TGG - chr3_2:23900036-23900055 None:intergenic 30.0%
ATAACGGTTATTAGACAACA+AGG - chr3_2:23900053-23900072 None:intergenic 30.0%
!! GCAATATCGTTGATGATATT+GGG + chr3_2:23900128-23900147 Msa0400030:CDS 30.0%
! TAGTGATGATTATGGGATTT+TGG + chr3_2:23900156-23900175 Msa0400030:CDS 30.0%
!! GATTTTGGAGGCTAATAAAA+TGG + chr3_2:23900171-23900190 Msa0400030:CDS 30.0%
!! TTTTGGAGGCTAATAAAATG+GGG + chr3_2:23900173-23900192 Msa0400030:CDS 30.0%
ATGCTAATTCTACTTTCTAG+TGG - chr3_2:23900226-23900245 None:intergenic 30.0%
TGAAGCAACTATTATTGAAG+TGG - chr3_2:23900300-23900319 None:intergenic 30.0%
CAAGGAGAAAACTTAAGAAT+GGG + chr3_2:23900379-23900398 Msa0400030:CDS 30.0%
AAAACTTAAGAATGGGAGAA+TGG + chr3_2:23900386-23900405 Msa0400030:CDS 30.0%
AAACTTAAGAATGGGAGAAT+GGG + chr3_2:23900387-23900406 Msa0400030:CDS 30.0%
! CAGAGAAATTTTCTCTATTC+AGG - chr3_2:23900583-23900602 None:intergenic 30.0%
CATTGTAAAGATGAATGTAG+AGG + chr3_2:23900633-23900652 Msa0400030:three_prime_UTR 30.0%
CAAAGATATTCAAGGAGAAA+AGG - chr3_2:23900676-23900695 None:intergenic 30.0%
TTTCTCCTTGAATATCTTTG+TGG + chr3_2:23900676-23900695 Msa0400030:three_prime_UTR 30.0%
GATTTCCACAAAGATATTCA+AGG - chr3_2:23900684-23900703 None:intergenic 30.0%
! ATTTTACTGAGGAAGTAAGA+GGG - chr3_2:23900721-23900740 None:intergenic 30.0%
! TAAAAGCTGAGATTTTACTG+AGG - chr3_2:23900732-23900751 None:intergenic 30.0%
AGAGATAGAAAGACTTTGAA+AGG - chr3_2:23900866-23900885 None:intergenic 30.0%
GTGAAGATTAAGAGAAATCA+AGG - chr3_2:23900924-23900943 None:intergenic 30.0%
ATGTCTTCAATCAATATGCA+AGG + chr3_2:23901036-23901055 Msa0400030:three_prime_UTR 30.0%
AAGGTGACTAAAATACCTTA+TGG + chr3_2:23901055-23901074 Msa0400030:three_prime_UTR 30.0%
GAACTAAAGACAAGAAAGAA+TGG - chr3_2:23901093-23901112 None:intergenic 30.0%
ATCTACCACAACATACAATT+GGG - chr3_2:23901211-23901230 None:intergenic 30.0%
TATCTACCACAACATACAAT+TGG - chr3_2:23901212-23901231 None:intergenic 30.0%
! ATTACACAAAGTGCTTTACA+AGG - chr3_2:23901325-23901344 None:intergenic 30.0%
!! TGTGTAATTTTTCGGTATGT+AGG + chr3_2:23901337-23901356 Msa0400030:three_prime_UTR 30.0%
!! TAATTTTTCGGTATGTAGGT+TGG + chr3_2:23901341-23901360 Msa0400030:three_prime_UTR 30.0%
!! AGGTTGGTACAAATAATCAA+AGG + chr3_2:23901357-23901376 Msa0400030:three_prime_UTR 30.0%
CAAAAGAGGCAAATAAATGT+AGG + chr3_2:23901427-23901446 Msa0400030:three_prime_UTR 30.0%
!! TCTTATGAAGAAGCACTTTG+AGG - chr3_2:23897781-23897800 None:intergenic 35.0%
! AGGAAACCTGATTTGATCAT+GGG + chr3_2:23897872-23897891 Msa0400030:CDS 35.0%
! TCTTTTCCCATGATCAAATC+AGG - chr3_2:23897881-23897900 None:intergenic 35.0%
ACATTAACAAGAGCAAGCTA+AGG + chr3_2:23897909-23897928 Msa0400030:CDS 35.0%
TAACTAAAGGACAAGGTTGT+TGG + chr3_2:23897981-23898000 Msa0400030:CDS 35.0%
ATTCATTTCCACTCCATTCT+TGG + chr3_2:23898127-23898146 Msa0400030:CDS 35.0%
!! TGGACTAGTTAAATGACCTA+GGG - chr3_2:23898224-23898243 None:intergenic 35.0%
CACACCATAGCTATAAATTG+CGG + chr3_2:23898242-23898261 Msa0400030:intron 35.0%
AAGACCGCAATTTATAGCTA+TGG - chr3_2:23898249-23898268 None:intergenic 35.0%
CAAAGATACTCTTAGTTGAG+AGG + chr3_2:23898347-23898366 Msa0400030:intron 35.0%
TCCAACAAGACTACTTTGAA+AGG + chr3_2:23898413-23898432 Msa0400030:intron 35.0%
!! TCCTTTCAAAGTAGTCTTGT+TGG - chr3_2:23898417-23898436 None:intergenic 35.0%
!! GTCCAGATTGGTTACATTTT+AGG - chr3_2:23898813-23898832 None:intergenic 35.0%
AGAATCTGCTATTGCTATGA+AGG - chr3_2:23898876-23898895 None:intergenic 35.0%
AGGGTACATTTCCCTTTAAA+AGG - chr3_2:23898902-23898921 None:intergenic 35.0%
ACATGCATATTCATCGCATA+AGG + chr3_2:23898978-23898997 Msa0400030:intron 35.0%
AATCTTAAGATCTTAGTGGG+GGG - chr3_2:23899027-23899046 None:intergenic 35.0%
!!! TTTTTTTTGAGGGAAGGGTT+TGG + chr3_2:23899131-23899150 Msa0400030:intron 35.0%
! TATAAGCATGCTAGGGTTTT+TGG + chr3_2:23899207-23899226 Msa0400030:intron 35.0%
GGCAGCATTAGCTATTATTA+AGG + chr3_2:23899228-23899247 Msa0400030:intron 35.0%
GGTCTATAGCTTTCAACTTA+AGG + chr3_2:23899249-23899268 Msa0400030:intron 35.0%
!! TGATGATGAAGTTGATGATG+AGG - chr3_2:23899972-23899991 None:intergenic 35.0%
AAATTGGTCAGGTAAAACCA+TGG - chr3_2:23900020-23900039 None:intergenic 35.0%
GAAAATGGATCAAATTGGTC+AGG - chr3_2:23900031-23900050 None:intergenic 35.0%
GGAAACTTGTCATGTCATAA+CGG - chr3_2:23900069-23900088 None:intergenic 35.0%
TATTTGACATGTCATGAGCA+TGG - chr3_2:23900090-23900109 None:intergenic 35.0%
!! GGCAATATCGTTGATGATAT+TGG + chr3_2:23900127-23900146 Msa0400030:CDS 35.0%
GGCTTCATAGTGATGATTAT+GGG + chr3_2:23900149-23900168 Msa0400030:CDS 35.0%
! TGATGATTATGGGATTTTGG+AGG + chr3_2:23900159-23900178 Msa0400030:CDS 35.0%
! CTAATTCTACTTTCTAGTGG+AGG - chr3_2:23900223-23900242 None:intergenic 35.0%
TCACATTCAAAACTCCAATG+AGG + chr3_2:23900330-23900349 Msa0400030:CDS 35.0%
GCAAGGAGAAAACTTAAGAA+TGG + chr3_2:23900378-23900397 Msa0400030:CDS 35.0%
GAAATCAAGAGGAGGAAAAT+AGG - chr3_2:23900440-23900459 None:intergenic 35.0%
TAAACTTGGAAATCAAGAGG+AGG - chr3_2:23900448-23900467 None:intergenic 35.0%
AATTTAGAGAGAGATCAGAG+GGG - chr3_2:23900511-23900530 None:intergenic 35.0%
CAATTTAGAGAGAGATCAGA+GGG - chr3_2:23900512-23900531 None:intergenic 35.0%
ATACTCTACAACGAACCTTA+AGG + chr3_2:23900533-23900552 Msa0400030:three_prime_UTR 35.0%
AATTTAACGGTACGTACAAC+CGG + chr3_2:23900607-23900626 Msa0400030:three_prime_UTR 35.0%
ATTCATCTTTACAATGCAGC+CGG - chr3_2:23900629-23900648 None:intergenic 35.0%
! TTTTACTGAGGAAGTAAGAG+GGG - chr3_2:23900720-23900739 None:intergenic 35.0%
! GATTTTACTGAGGAAGTAAG+AGG - chr3_2:23900722-23900741 None:intergenic 35.0%
TAGGTAATACTATACACCGT+TGG + chr3_2:23900769-23900788 Msa0400030:three_prime_UTR 35.0%
! CTTTGAAAGGATTGTCATAG+AGG - chr3_2:23900853-23900872 None:intergenic 35.0%
TACAACCCAATTGTATGTTG+TGG + chr3_2:23901203-23901222 Msa0400030:three_prime_UTR 35.0%
! GTGTATACATAGTCTTGCTT+CGG + chr3_2:23901266-23901285 Msa0400030:three_prime_UTR 35.0%
TTAGCAGTGTTTATAGCACT+AGG + chr3_2:23901467-23901486 Msa0400030:three_prime_UTR 35.0%
TTATAGCACTAGGAACAATG+TGG + chr3_2:23901477-23901496 Msa0400030:three_prime_UTR 35.0%
CTCTCTCTCTAATGCAAATG+AGG + chr3_2:23897852-23897871 Msa0400030:exon 40.0%
! GAGGAAACCTGATTTGATCA+TGG + chr3_2:23897871-23897890 Msa0400030:CDS 40.0%
AACAAGAGCAAGCTAAGGAA+AGG + chr3_2:23897914-23897933 Msa0400030:CDS 40.0%
ACAAGAGCAAGCTAAGGAAA+GGG + chr3_2:23897915-23897934 Msa0400030:CDS 40.0%
ATGATGAGTTCTTCCTCTTG+TGG - chr3_2:23898109-23898128 None:intergenic 40.0%
AATGTACCTGTTGCCAAGAA+TGG - chr3_2:23898143-23898162 None:intergenic 40.0%
!! GTGGACTAGTTAAATGACCT+AGG - chr3_2:23898225-23898244 None:intergenic 40.0%
CGCAATTTATAGCTATGGTG+TGG - chr3_2:23898244-23898263 None:intergenic 40.0%
GCATTCTGACGTGTGAATTA+TGG - chr3_2:23898325-23898344 None:intergenic 40.0%
GCAGTGAAAATTGTCCAGAT+TGG - chr3_2:23898825-23898844 None:intergenic 40.0%
ATCTTAAGATCTTAGTGGGG+GGG - chr3_2:23899026-23899045 None:intergenic 40.0%
ACGTAGCATATAAGCATGCT+AGG + chr3_2:23899199-23899218 Msa0400030:intron 40.0%
CGTAGCATATAAGCATGCTA+GGG + chr3_2:23899200-23899219 Msa0400030:intron 40.0%
! TGGAGTAGAGTTGTTGTTGT+TGG - chr3_2:23899837-23899856 None:intergenic 40.0%
TCCAAACAACAGTGACACTT+CGG + chr3_2:23899859-23899878 Msa0400030:CDS 40.0%
GGGCTTCATAGTGATGATTA+TGG + chr3_2:23900148-23900167 Msa0400030:CDS 40.0%
!! GAAGATAAGAGTGCCCTAAT+TGG + chr3_2:23900247-23900266 Msa0400030:CDS 40.0%
! AACTCCAATGAGGACTTGTT+TGG + chr3_2:23900340-23900359 Msa0400030:CDS 40.0%
! ACTCCAATGAGGACTTGTTT+GGG + chr3_2:23900341-23900360 Msa0400030:CDS 40.0%
AAACCCAAACAAGTCCTCAT+TGG - chr3_2:23900347-23900366 None:intergenic 40.0%
! AATGAGGACTTGTTTGGGTT+TGG + chr3_2:23900346-23900365 Msa0400030:CDS 40.0%
! TTGTTTGGGTTTGGAAGTCA+TGG + chr3_2:23900355-23900374 Msa0400030:CDS 40.0%
! TGTTTGGGTTTGGAAGTCAT+GGG + chr3_2:23900356-23900375 Msa0400030:CDS 40.0%
AAGAATGGGAGAATGGGATT+TGG + chr3_2:23900393-23900412 Msa0400030:CDS 40.0%
CCAATTTAGAGAGAGATCAG+AGG - chr3_2:23900513-23900532 None:intergenic 40.0%
CCTCTGATCTCTCTCTAAAT+TGG + chr3_2:23900510-23900529 Msa0400030:three_prime_UTR 40.0%
TTCAAGGAGAAAAGGAAGAG+TGG - chr3_2:23900668-23900687 None:intergenic 40.0%
!! ATGAGAAGACATTGACTTGG+AGG - chr3_2:23900982-23901001 None:intergenic 40.0%
TCCAAGTCAATGTCTTCTCA+TGG + chr3_2:23900981-23901000 Msa0400030:three_prime_UTR 40.0%
! ACCATGAGAAGACATTGACT+TGG - chr3_2:23900985-23901004 None:intergenic 40.0%
CTTTACAAGGAAACCCACAA+GGG - chr3_2:23901312-23901331 None:intergenic 40.0%
GCAAGCTAAGGAAAGGGTTA+TGG + chr3_2:23897921-23897940 Msa0400030:CDS 45.0%
ACCTGAGGAAGATGAGAAGT+TGG + chr3_2:23897946-23897965 Msa0400030:CDS 45.0%
ACCAACTTCTCATCTTCCTC+AGG - chr3_2:23897950-23897969 None:intergenic 45.0%
GTTGTTGGAGTGACATTGCT+AGG + chr3_2:23897996-23898015 Msa0400030:CDS 45.0%
AGTGACATTGCTAGGAATGC+TGG + chr3_2:23898004-23898023 Msa0400030:CDS 45.0%
!! CTAGGAATGCTGGTCTTCAA+AGG + chr3_2:23898014-23898033 Msa0400030:CDS 45.0%
!! AATGCTGGTCTTCAAAGGTG+TGG + chr3_2:23898019-23898038 Msa0400030:CDS 45.0%
GTAAAAGTTGCCGTCTTCGT+TGG + chr3_2:23898041-23898060 Msa0400030:CDS 45.0%
TTGAGACCTGATCTTAAGCG+CGG + chr3_2:23898073-23898092 Msa0400030:CDS 45.0%
AGGTAGACGTGCTGCAATTT+GGG - chr3_2:23899753-23899772 None:intergenic 45.0%
ATTTCATTGTCGGTACGACC+AGG - chr3_2:23899773-23899792 None:intergenic 45.0%
! GTGTCACTGTTGTTTGGAGA+TGG - chr3_2:23899857-23899876 None:intergenic 45.0%
! TCCGAAGTGTCACTGTTGTT+TGG - chr3_2:23899863-23899882 None:intergenic 45.0%
! ATGCATGTGCATGGATTGCA+TGG - chr3_2:23899996-23900015 None:intergenic 45.0%
ATCCATGCACATGCATACCA+TGG + chr3_2:23900000-23900019 Msa0400030:CDS 45.0%
AACCATGGTATGCATGTGCA+TGG - chr3_2:23900005-23900024 None:intergenic 45.0%
AATGGGAGAATGGGATTTGG+AGG + chr3_2:23900396-23900415 Msa0400030:CDS 45.0%
ATGGGAGAATGGGATTTGGA+GGG + chr3_2:23900397-23900416 Msa0400030:CDS 45.0%
CAGGTATAGTTGTCTACAGC+CGG - chr3_2:23900564-23900583 None:intergenic 45.0%
ATAGAGGACGAGATCCTCTT+CGG - chr3_2:23900837-23900856 None:intergenic 45.0%
TTGCATTCTTTGTGCCCTTG+TGG + chr3_2:23901295-23901314 Msa0400030:three_prime_UTR 45.0%
TGCATTCTTTGTGCCCTTGT+GGG + chr3_2:23901296-23901315 Msa0400030:three_prime_UTR 45.0%
GCTTTACAAGGAAACCCACA+AGG - chr3_2:23901313-23901332 None:intergenic 45.0%
!! AATTAATTATTTATTTCAAA+AGG + chr3_2:23898711-23898730 Msa0400030:intron 5.0%
!! ATTAATTATTTATTTCAAAA+GGG + chr3_2:23898712-23898731 Msa0400030:intron 5.0%
!!! AATTTTTTTTTTTTTTTTGA+GGG + chr3_2:23899121-23899140 Msa0400030:intron 5.0%
GAAAGGGTTATGGTCACCTG+AGG + chr3_2:23897931-23897950 Msa0400030:CDS 50.0%
TCCACTCCATTCTTGGCAAC+AGG + chr3_2:23898134-23898153 Msa0400030:CDS 50.0%
ACCTGTTGCCAAGAATGGAG+TGG - chr3_2:23898138-23898157 None:intergenic 50.0%
TTGAGGTCTGTCTTGTGCAG+TGG + chr3_2:23899299-23899318 Msa0400030:intron 50.0%
CAGGTAGACGTGCTGCAATT+TGG - chr3_2:23899754-23899773 None:intergenic 50.0%
CAAATTGCAGCACGTCTACC+TGG + chr3_2:23899752-23899771 Msa0400030:CDS 50.0%
AGAGAGATCAGAGGGGACAA+GGG - chr3_2:23900504-23900523 None:intergenic 50.0%
AACGAACCTTAAGGTGCAGC+CGG + chr3_2:23900542-23900561 Msa0400030:three_prime_UTR 50.0%
GGAAGTAAGAGGGGTCATAG+CGG - chr3_2:23900711-23900730 None:intergenic 50.0%
AAAAGGTAGATGGGCCGAAG+AGG + chr3_2:23900820-23900839 Msa0400030:three_prime_UTR 50.0%
TGGGTGCCCAAGATTCCATA+AGG - chr3_2:23901073-23901092 None:intergenic 50.0%
AATGCGCCGCGCTTAAGATC+AGG - chr3_2:23898082-23898101 None:intergenic 55.0%
GGGTTTGGAAGTCATGGGCA+AGG + chr3_2:23900361-23900380 Msa0400030:CDS 55.0%
GAGAGATCAGAGGGGACAAG+GGG - chr3_2:23900503-23900522 None:intergenic 55.0%
GAGAGAGATCAGAGGGGACA+AGG - chr3_2:23900505-23900524 None:intergenic 55.0%
! CGGCGCATTTTCGCCACAAG+AGG + chr3_2:23898093-23898112 Msa0400030:CDS 60.0%
CAGAGGGGACAAGGGGTGAT+TGG - chr3_2:23900496-23900515 None:intergenic 60.0%
CTACAGCCGGCTGCACCTTA+AGG - chr3_2:23900551-23900570 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 23897765 23901559 23897765 ID=Msa0400030;Name=Msa0400030
chr3_2 mRNA 23897765 23901559 23897765 ID=Msa0400030-mRNA-1;Parent=Msa0400030;Name=Msa0400030-mRNA-1;_AED=0.03;_eAED=0.03;_QI=98|1|1|1|1|1|2|1091|338
chr3_2 exon 23897765 23898155 23897765 ID=Msa0400030-mRNA-1:exon:5022;Parent=Msa0400030-mRNA-1
chr3_2 exon 23899745 23901559 23899745 ID=Msa0400030-mRNA-1:exon:5023;Parent=Msa0400030-mRNA-1
chr3_2 five_prime_UTR 23897765 23897862 23897765 ID=Msa0400030-mRNA-1:five_prime_utr;Parent=Msa0400030-mRNA-1
chr3_2 CDS 23897863 23898155 23897863 ID=Msa0400030-mRNA-1:cds;Parent=Msa0400030-mRNA-1
chr3_2 CDS 23899745 23900468 23899745 ID=Msa0400030-mRNA-1:cds;Parent=Msa0400030-mRNA-1
chr3_2 three_prime_UTR 23900469 23901559 23900469 ID=Msa0400030-mRNA-1:three_prime_utr;Parent=Msa0400030-mRNA-1
Gene Sequence

>Msa0400030

ATGCAAATGAGGAAACCTGATTTGATCATGGGAAAAGACAACAACAACATTAACAAGAGCAAGCTAAGGAAAGGGTTATGGTCACCTGAGGAAGATGAGAAGTTGGTAAGATACATGATAACTAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGTAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTTAAGCGCGGCGCATTTTCGCCACAAGAGGAAGAACTCATCATTCATTTCCACTCCATTCTTGGCAACAGATGGTCCCAAATTGCAGCACGTCTACCTGGTCGTACCGACAATGAAATAAAGAATTTTTGGAATTCCACACTGAAGAAAAGATTGAAAACCAACAACAACAACTCTACTCCATCTCCAAACAACAGTGACACTTCGGATCAACCAATAGATAATGTTTTTGATGTGAAAAATAACATGATCATGCCAATTAATGAACAAGAACTAATGACATTATGCATGGATTCCTCATCATCAACTTCATCATCATCCATGCAATCCATGCACATGCATACCATGGTTTTACCTGACCAATTTGATCCATTTTCCTTGTTGTCTAATAACCGTTATGACATGACAAGTTTCCATGCTCATGACATGTCAAATAGTTGTTTAACACAAGTTGGCAATATCGTTGATGATATTGGGCTTCATAGTGATGATTATGGGATTTTGGAGGCTAATAAAATGGGGTTATTAGAAAATGATTTTGAACTTCCTCCACTAGAAAGTAGAATTAGCATTGAAGATAAGAGTGCCCTAATTGGTGATTATAATGTGAAAAGCCATAACAACCACTTCAATAATAGTTGCTTCAATAACACTAATCACATTCAAAACTCCAATGAGGACTTGTTTGGGTTTGGAAGTCATGGGCAAGGAGAAAACTTAAGAATGGGAGAATGGGATTTGGAGGGTTTGATGCAAGACATATCCTATTTTCCTCCTCTTGATTTCCAAGTTTAA
Protein sequence

>Msa0400030

MQMRKPDLIMGKDNNNINKSKLRKGLWSPEEDEKLVRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNNSTPSPNNSDTSDQPIDNVFDVKNNMIMPINEQELMTLCMDSSSSTSSSSMQSMHMHTMVLPDQFDPFSLLSNNRYDMTSFHAHDMSNSCLTQVGNIVDDIGLHSDDYGILEANKMGLLENDFELPPLESRISIEDKSALIGDYNVKSHNNHFNNSCFNNTNHIQNSNEDLFGFGSHGQGENLRMGEWDLEGLMQDISYFPPLDFQV*