Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455680 | XP_039687194.1 | 98.498 | 333 | 5 | 0 | 1 | 333 | 1 | 333 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455680 | sp|Q8GUU2|RIE1_ARATH | 28.996 | 269 | 164 | 7 | 88 | 333 | 89 | 353 | 2.08e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455680 | A0A396IPD2 | 98.498 | 333 | 5 | 0 | 1 | 333 | 1 | 333 | 0.0 | 683 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077370 | Msa0455680 | 0.808094 | 3.666481e-50 | -8.615850e-47 |
| Msa0455680 | Msa0529000 | 0.816188 | 6.289295e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455680 | MtrunA17_Chr3g0102761 | 98.498 | 333 | 5 | 0 | 1 | 333 | 1 | 333 | 0.0 | 683 |
| Msa0455680 | MtrunA17_Chr5g0446921 | 73.054 | 334 | 84 | 3 | 1 | 333 | 12 | 340 | 2.04e-161 | 454 |
| Msa0455680 | MtrunA17_Chr1g0148631 | 34.884 | 301 | 153 | 7 | 69 | 328 | 84 | 382 | 3.66e-54 | 182 |
| Msa0455680 | MtrunA17_Chr3g0138451 | 35.430 | 302 | 153 | 7 | 70 | 331 | 62 | 361 | 4.64e-54 | 182 |
| Msa0455680 | MtrunA17_Chr8g0391751 | 29.389 | 262 | 160 | 7 | 88 | 328 | 69 | 326 | 4.18e-36 | 133 |
| Msa0455680 | MtrunA17_Chr4g0057351 | 29.391 | 279 | 153 | 6 | 88 | 328 | 85 | 357 | 1.20e-32 | 124 |
| Msa0455680 | MtrunA17_Chr1g0161291 | 28.889 | 270 | 164 | 6 | 88 | 333 | 80 | 345 | 4.72e-32 | 122 |
| Msa0455680 | MtrunA17_Chr7g0255261 | 30.435 | 253 | 134 | 9 | 100 | 333 | 63 | 292 | 7.90e-32 | 120 |
| Msa0455680 | MtrunA17_Chr5g0397921 | 30.233 | 301 | 160 | 10 | 74 | 328 | 77 | 373 | 9.86e-30 | 117 |
| Msa0455680 | MtrunA17_Chr7g0246571 | 26.996 | 263 | 147 | 7 | 100 | 328 | 102 | 353 | 1.49e-26 | 108 |
| Msa0455680 | MtrunA17_Chr7g0255321 | 32.515 | 163 | 87 | 6 | 192 | 333 | 129 | 289 | 1.99e-17 | 81.3 |
| Msa0455680 | MtrunA17_Chr7g0255331 | 34.677 | 124 | 66 | 3 | 219 | 328 | 166 | 288 | 9.10e-16 | 76.6 |
| Msa0455680 | MtrunA17_Chr5g0437361 | 40.217 | 92 | 42 | 3 | 242 | 332 | 70 | 149 | 3.34e-12 | 63.9 |
| Msa0455680 | MtrunA17_Chr3g0113811 | 32.203 | 118 | 77 | 2 | 218 | 332 | 35 | 152 | 5.02e-12 | 63.5 |
| Msa0455680 | MtrunA17_Chr4g0065171 | 42.424 | 66 | 30 | 2 | 264 | 328 | 468 | 526 | 6.79e-12 | 66.2 |
| Msa0455680 | MtrunA17_Chr5g0406031 | 35.556 | 90 | 45 | 3 | 243 | 331 | 157 | 234 | 2.04e-11 | 63.2 |
| Msa0455680 | MtrunA17_Chr1g0211831 | 34.043 | 94 | 49 | 2 | 234 | 327 | 248 | 328 | 6.94e-11 | 62.8 |
| Msa0455680 | MtrunA17_Chr7g0246761 | 50.980 | 51 | 24 | 1 | 283 | 332 | 86 | 136 | 7.11e-11 | 60.8 |
| Msa0455680 | MtrunA17_Chr7g0274731 | 50.000 | 48 | 23 | 1 | 282 | 328 | 109 | 156 | 9.21e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455680 | AT5G55970.2 | 65.015 | 323 | 102 | 3 | 11 | 333 | 32 | 343 | 8.84e-149 | 422 |
| Msa0455680 | AT5G55970.1 | 65.015 | 323 | 102 | 3 | 11 | 333 | 32 | 343 | 8.84e-149 | 422 |
| Msa0455680 | AT4G26580.1 | 68.350 | 297 | 85 | 3 | 35 | 331 | 46 | 333 | 2.37e-143 | 408 |
| Msa0455680 | AT4G26580.2 | 68.350 | 297 | 85 | 3 | 35 | 331 | 46 | 333 | 2.37e-143 | 408 |
| Msa0455680 | AT5G55970.3 | 71.179 | 229 | 64 | 1 | 34 | 262 | 49 | 275 | 7.06e-115 | 335 |
| Msa0455680 | AT1G80400.1 | 33.548 | 310 | 160 | 8 | 60 | 328 | 92 | 396 | 2.66e-56 | 188 |
| Msa0455680 | AT4G32600.1 | 35.333 | 300 | 150 | 7 | 71 | 328 | 107 | 404 | 1.97e-55 | 187 |
| Msa0455680 | AT4G32600.2 | 35.333 | 300 | 150 | 7 | 71 | 328 | 107 | 404 | 1.97e-55 | 187 |
| Msa0455680 | AT3G61180.1 | 29.181 | 281 | 154 | 8 | 84 | 328 | 93 | 364 | 3.14e-34 | 129 |
| Msa0455680 | AT2G01735.1 | 28.996 | 269 | 164 | 7 | 88 | 333 | 89 | 353 | 2.11e-33 | 127 |
| Msa0455680 | AT1G68070.1 | 29.893 | 281 | 164 | 9 | 74 | 328 | 60 | 333 | 5.94e-33 | 125 |
| Msa0455680 | AT4G11680.1 | 31.944 | 288 | 154 | 9 | 74 | 328 | 101 | 379 | 1.49e-32 | 125 |
| Msa0455680 | AT4G11680.2 | 29.022 | 317 | 154 | 10 | 74 | 328 | 101 | 408 | 1.52e-26 | 109 |
| Msa0455680 | AT1G12760.2 | 27.070 | 314 | 159 | 11 | 74 | 328 | 21 | 323 | 3.35e-26 | 107 |
| Msa0455680 | AT1G12760.1 | 27.070 | 314 | 159 | 11 | 74 | 328 | 92 | 394 | 4.33e-26 | 107 |
| Msa0455680 | AT1G63170.1 | 30.249 | 281 | 136 | 10 | 98 | 328 | 96 | 366 | 4.40e-26 | 107 |
| Msa0455680 | AT3G19910.1 | 34.483 | 87 | 44 | 1 | 241 | 327 | 255 | 328 | 2.72e-12 | 67.4 |
| Msa0455680 | AT3G47990.2 | 28.877 | 187 | 94 | 7 | 173 | 328 | 82 | 260 | 3.76e-12 | 67.0 |
| Msa0455680 | AT3G47990.3 | 28.877 | 187 | 94 | 7 | 173 | 328 | 41 | 219 | 3.91e-12 | 66.6 |
| Msa0455680 | AT3G47990.5 | 28.877 | 187 | 94 | 7 | 173 | 328 | 41 | 219 | 3.91e-12 | 66.6 |
| Msa0455680 | AT3G47990.4 | 28.877 | 187 | 94 | 7 | 173 | 328 | 41 | 219 | 3.91e-12 | 66.6 |
| Msa0455680 | AT3G47990.1 | 28.877 | 187 | 94 | 7 | 173 | 328 | 98 | 276 | 4.30e-12 | 66.6 |
| Msa0455680 | AT2G35910.1 | 58.140 | 43 | 17 | 1 | 287 | 328 | 147 | 189 | 2.27e-11 | 63.2 |
| Msa0455680 | AT5G66070.5 | 37.500 | 88 | 38 | 3 | 245 | 331 | 150 | 221 | 3.10e-11 | 62.8 |
| Msa0455680 | AT5G66070.1 | 37.500 | 88 | 38 | 3 | 245 | 331 | 150 | 221 | 3.10e-11 | 62.8 |
| Msa0455680 | AT5G66070.2 | 37.500 | 88 | 38 | 3 | 245 | 331 | 174 | 245 | 4.06e-11 | 62.8 |
| Msa0455680 | AT5G43420.1 | 34.118 | 85 | 55 | 1 | 245 | 328 | 96 | 180 | 7.26e-11 | 63.2 |
Find 95 sgRNAs with CRISPR-Local
Find 452 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGTTGTTACTTTA+TGG | 0.063293 | 3_3:-48712522 | Msa0455680:CDS |
| ATGGACAACCTCACAATATT+TGG | 0.130593 | 3_3:+48707418 | None:intergenic |
| TTCTTCTTTGTCTTTGTATT+TGG | 0.132140 | 3_3:+48707821 | None:intergenic |
| GAGCAAACAAATTTCAATTT+TGG | 0.138033 | 3_3:-48712997 | Msa0455680:five_prime_UTR |
| ATATATATGCATATATTTAT+TGG | 0.192993 | 3_3:-48713255 | Msa0455680:five_prime_UTR |
| GATCAGATCTTGGTCCATTT+TGG | 0.217801 | 3_3:+48712706 | None:intergenic |
| ATCCAAGTACTAGAATTAAA+AGG | 0.225472 | 3_3:+48712672 | None:intergenic |
| TGCTCTTGGCCTTTCTGATT+TGG | 0.226775 | 3_3:-48712466 | Msa0455680:CDS |
| AACACTAAGAATACACTTAA+TGG | 0.227730 | 3_3:+48707399 | None:intergenic |
| ATTAAAATGCTTTGTTCTTA+AGG | 0.229358 | 3_3:-48707536 | Msa0455680:intron |
| TGATTTAAGATTTAATTAAA+TGG | 0.232996 | 3_3:+48707663 | None:intergenic |
| GGAAGATATCATCAAATTAA+TGG | 0.236379 | 3_3:-48712501 | Msa0455680:CDS |
| TTGTGACATATCTTCTTTAT+TGG | 0.247965 | 3_3:-48713219 | Msa0455680:five_prime_UTR |
| TCTGCATCATTCTTCTTGTT+TGG | 0.260239 | 3_3:-48708669 | Msa0455680:CDS |
| ATGCAGAGAACTTGGAGTTT+TGG | 0.284599 | 3_3:+48708685 | None:intergenic |
| TTAAAATGCTTTGTTCTTAA+GGG | 0.286820 | 3_3:-48707535 | Msa0455680:intron |
| TGGATAGTTGGTTATGATAT+TGG | 0.288164 | 3_3:-48712552 | Msa0455680:CDS |
| TGTGACATATCTTCTTTATT+GGG | 0.295164 | 3_3:-48713218 | Msa0455680:five_prime_UTR |
| ACCAAAGTGGAGAAAATCTT+TGG | 0.297690 | 3_3:+48707615 | None:intergenic |
| CCTCATACCAAGTCTTCTTT+AGG | 0.299971 | 3_3:+48713026 | None:intergenic |
| CATCAAATTAATGGGACTAA+TGG | 0.304532 | 3_3:-48712492 | Msa0455680:CDS |
| TGGTCCTTTGACTCACGTTT+TGG | 0.318994 | 3_3:-48708724 | Msa0455680:CDS |
| AGAGTGTTTCATTACCAAAA+TGG | 0.321656 | 3_3:-48712720 | Msa0455680:CDS |
| CCTATGAGGGTTTGGATAGT+TGG | 0.350667 | 3_3:-48712564 | Msa0455680:CDS |
| AGATTGACATTGCAATCTTA+AGG | 0.370676 | 3_3:-48707375 | Msa0455680:three_prime_UTR |
| AAGTTCAGTAGTCAGATTCT+TGG | 0.379321 | 3_3:-48713352 | Msa0455680:five_prime_UTR |
| CTGTTTGGCCTATGAGGGTT+TGG | 0.381036 | 3_3:-48712572 | Msa0455680:CDS |
| TTGTACCATGCAGTGTATAC+AGG | 0.398135 | 3_3:-48708822 | Msa0455680:intron |
| GAAGATATCATCAAATTAAT+GGG | 0.398923 | 3_3:-48712500 | Msa0455680:CDS |
| CAAAGAATGAGAAACCTGTT+TGG | 0.407405 | 3_3:-48712587 | Msa0455680:CDS |
| CTCATGTGCCTTGTAACATA+AGG | 0.407913 | 3_3:-48713175 | Msa0455680:intron |
| ATCATTGTTAACATCTACTT+TGG | 0.411799 | 3_3:+48708477 | None:intergenic |
| CAAACCCTCATAGGCCAAAC+AGG | 0.416165 | 3_3:+48712573 | None:intergenic |
| CCAACTATCCAAACCCTCAT+AGG | 0.421618 | 3_3:+48712564 | None:intergenic |
| GGAAAGAAGAGAAGGTATGA+AGG | 0.428190 | 3_3:+48713290 | None:intergenic |
| TATGTTACTTACCGGCTCTT+CGG | 0.429112 | 3_3:+48708429 | None:intergenic |
| GAAGAATGATGCAGAGAACT+TGG | 0.430799 | 3_3:+48708677 | None:intergenic |
| TGATCTTGAGATAAGGTAGT+TGG | 0.435282 | 3_3:+48712807 | None:intergenic |
| AACATTGGTTCCTCTTCTAA+AGG | 0.446577 | 3_3:-48708556 | Msa0455680:CDS |
| AAATCTCACAACTTCCATCT+TGG | 0.447583 | 3_3:-48708519 | Msa0455680:CDS |
| TATGAATATATAGAAGCAAA+AGG | 0.447955 | 3_3:-48712960 | Msa0455680:five_prime_UTR |
| AGAAACCTGTTTGGCCTATG+AGG | 0.451178 | 3_3:-48712578 | Msa0455680:CDS |
| AAGATTTAATTAAATGGTGT+TGG | 0.451291 | 3_3:+48707669 | None:intergenic |
| AAACAAACAATGAAGAAAAC+AGG | 0.451322 | 3_3:-48712437 | Msa0455680:intron |
| CCAAAGTGGAGAAAATCTTT+GGG | 0.464516 | 3_3:+48707616 | None:intergenic |
| AACAAGCACAGCATTTACTT+TGG | 0.465461 | 3_3:-48712616 | Msa0455680:CDS |
| CTAAAATACCTTATGTTACA+AGG | 0.477292 | 3_3:+48713167 | None:intergenic |
| ACATATCTTCTTTATTGGGG+TGG | 0.478860 | 3_3:-48713214 | Msa0455680:five_prime_UTR |
| GCACATGAGAAATAATTCAT+TGG | 0.479035 | 3_3:+48713189 | None:intergenic |
| GTGACATATCTTCTTTATTG+GGG | 0.485001 | 3_3:-48713217 | Msa0455680:five_prime_UTR |
| AAGATTGATCGCCGAAGAGC+CGG | 0.485021 | 3_3:-48708440 | Msa0455680:intron |
| ACAAAGACAAAGAAGAAGTT+AGG | 0.485178 | 3_3:-48707815 | Msa0455680:CDS |
| TCCAAGTACTAGAATTAAAA+GGG | 0.487171 | 3_3:+48712673 | None:intergenic |
| AATGGACCAAGATCTGATCT+TGG | 0.496984 | 3_3:-48712702 | Msa0455680:CDS |
| GAAGTCCTTGTTTGCAAAGA+GGG | 0.502410 | 3_3:+48707724 | None:intergenic |
| TGCTGCCCTCTTTGCAAACA+AGG | 0.505648 | 3_3:-48707729 | Msa0455680:CDS |
| CCTAAAGAAGACTTGGTATG+AGG | 0.509417 | 3_3:-48713026 | Msa0455680:five_prime_UTR |
| TGAGATAAGGTAGTTGGTTG+AGG | 0.509851 | 3_3:+48712813 | None:intergenic |
| CTTTGCAATATGGTTTGTGA+TGG | 0.515501 | 3_3:-48708755 | Msa0455680:CDS |
| CTTGGTTACAACATGAACAT+TGG | 0.516268 | 3_3:-48708571 | Msa0455680:CDS |
| TTTGTTGTTCCAAATCAGAA+AGG | 0.520171 | 3_3:+48712457 | None:intergenic |
| GGGACTAATGGAGATGCTCT+TGG | 0.520597 | 3_3:-48712480 | Msa0455680:CDS |
| TAAAATGCTTTGTTCTTAAG+GGG | 0.520688 | 3_3:-48707534 | Msa0455680:intron |
| TCCATCTTGGAGATTTAAAG+TGG | 0.525434 | 3_3:-48708506 | Msa0455680:CDS |
| TTTAGGACCTAAAGAAGACT+TGG | 0.528353 | 3_3:-48713033 | Msa0455680:intron |
| TAAGGTAGTTGGTTGAGGCA+TGG | 0.530067 | 3_3:+48712818 | None:intergenic |
| TCTTGATCTTGATATTCTCA+TGG | 0.531696 | 3_3:+48712761 | None:intergenic |
| CCACTCATTAGCACACTCCT+TGG | 0.535217 | 3_3:-48708589 | Msa0455680:CDS |
| GGTAAAGTTAGAGACTCAAG+AGG | 0.538594 | 3_3:+48713325 | None:intergenic |
| GGTTTGTGATGGGAAATGTT+TGG | 0.542130 | 3_3:-48708744 | Msa0455680:CDS |
| GCCACTTTAAATCTCCAAGA+TGG | 0.543549 | 3_3:+48708505 | None:intergenic |
| GAAAGAAGAGAAGGTATGAA+GGG | 0.543920 | 3_3:+48713291 | None:intergenic |
| GAAACCTGTTTGGCCTATGA+GGG | 0.546725 | 3_3:-48712577 | Msa0455680:CDS |
| TTAGAACCAAGATCAGATCT+TGG | 0.550843 | 3_3:+48712696 | None:intergenic |
| TGTTCCAAAACGTGAGTCAA+AGG | 0.552816 | 3_3:+48708720 | None:intergenic |
| ATGAATATATAGAAGCAAAA+GGG | 0.554054 | 3_3:-48712959 | Msa0455680:five_prime_UTR |
| TTTGCAAACAAGGACTTCAA+AGG | 0.560300 | 3_3:-48707719 | Msa0455680:CDS |
| ATATGAAGGGAAAGAAGAGA+AGG | 0.563112 | 3_3:+48713282 | None:intergenic |
| ACAGGAATGTTGCATATGCT+TGG | 0.563922 | 3_3:-48707844 | Msa0455680:intron |
| TGAAGGTTGATCTTGAGATA+AGG | 0.573330 | 3_3:+48712800 | None:intergenic |
| ATGTTTATAATTGTATCAGA+AGG | 0.573364 | 3_3:+48707337 | None:intergenic |
| ATCAGATGCACCTTTAGAAG+AGG | 0.578523 | 3_3:+48708546 | None:intergenic |
| AATTTCATCTTCAAGCAACA+TGG | 0.579641 | 3_3:-48712898 | Msa0455680:exon |
| ATCTAAAATGTGTTGATCAG+TGG | 0.585973 | 3_3:-48707767 | Msa0455680:CDS |
| CATGTACAGAAATAGTTCAC+CGG | 0.592301 | 3_3:-48707574 | Msa0455680:three_prime_UTR |
| ACTCACTCATGTAACCAAAG+TGG | 0.597858 | 3_3:+48707602 | None:intergenic |
| TCTGTAATCCAAATATTGTG+AGG | 0.598127 | 3_3:-48707426 | Msa0455680:three_prime_UTR |
| TTTGCAATATGGTTTGTGAT+GGG | 0.603007 | 3_3:-48708754 | Msa0455680:CDS |
| AGATGGAACATATGGGAACA+TGG | 0.605026 | 3_3:+48707786 | None:intergenic |
| TGAAGTCCTTGTTTGCAAAG+AGG | 0.607127 | 3_3:+48707723 | None:intergenic |
| GTATGAAGGGTATGTCAAGA+AGG | 0.615700 | 3_3:+48713304 | None:intergenic |
| CAATGTTCATGTTGTAACCA+AGG | 0.621288 | 3_3:+48708572 | None:intergenic |
| CCAAGGAGTGTGCTAATGAG+TGG | 0.648597 | 3_3:+48708589 | None:intergenic |
| TGCAATAGGAGAAAACAGCA+TGG | 0.672489 | 3_3:-48712856 | Msa0455680:CDS |
| GTAAAGTTAGAGACTCAAGA+GGG | 0.741900 | 3_3:+48713326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATATTTTATTTATTTT+TGG | + | chr3_3:48710317-48710336 | None:intergenic | 0.0% |
| !! | CATATATATATATATATGAA+GGG | + | chr3_3:48707424-48707443 | None:intergenic | 10.0% |
| !! | ATATATATGCATATATTTAT+TGG | - | chr3_3:48707435-48707454 | Msa0455680:three_prime_UTR | 10.0% |
| !!! | TTATTTTAGAATTATTTCTT+AGG | - | chr3_3:48707585-48707604 | Msa0455680:three_prime_UTR | 10.0% |
| !!! | TTAATGATATGTTTATTTTT+AGG | - | chr3_3:48707640-48707659 | Msa0455680:three_prime_UTR | 10.0% |
| !!! | GGAAATATAATTTTTTTTAT+TGG | - | chr3_3:48708726-48708745 | Msa0455680:CDS | 10.0% |
| !!! | AATATAATTTTTTTTATTGG+TGG | - | chr3_3:48708729-48708748 | Msa0455680:CDS | 10.0% |
| !!! | ATATAATTTTTTTTATTGGT+GGG | - | chr3_3:48708730-48708749 | Msa0455680:CDS | 10.0% |
| !!! | AAAAATATTTGGTTTTTTAA+CGG | - | chr3_3:48709003-48709022 | Msa0455680:intron | 10.0% |
| !!! | ATTTTGGATATTTTTTTATT+TGG | + | chr3_3:48710194-48710213 | None:intergenic | 10.0% |
| !! | ATTATATAAATATGTATATG+CGG | - | chr3_3:48710340-48710359 | Msa0455680:intron | 10.0% |
| !! | TAATTTACGTAATTTATTAA+CGG | - | chr3_3:48710744-48710763 | Msa0455680:intron | 10.0% |
| !!! | AATAAATTTTTTTATTGTAG+GGG | - | chr3_3:48711121-48711140 | Msa0455680:intron | 10.0% |
| !!! | TGATTTAAGATTTAATTAAA+TGG | + | chr3_3:48713030-48713049 | None:intergenic | 10.0% |
| !! | GCATATATATATATATATGA+AGG | + | chr3_3:48707425-48707444 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAATGTCAATT+AGG | + | chr3_3:48708704-48708723 | None:intergenic | 15.0% |
| !!! | AATTGACATTTTTTTTTTTG+AGG | - | chr3_3:48708704-48708723 | Msa0455680:CDS | 15.0% |
| !!! | ATTGACATTTTTTTTTTTGA+GGG | - | chr3_3:48708705-48708724 | Msa0455680:CDS | 15.0% |
| !!! | TATAATTTTTTTTATTGGTG+GGG | - | chr3_3:48708731-48708750 | Msa0455680:CDS | 15.0% |
| !!! | ATATTTTTATGAAGTATTGT+TGG | + | chr3_3:48708962-48708981 | None:intergenic | 15.0% |
| !! | AATACACTTTCAAAAATATT+TGG | - | chr3_3:48708992-48709011 | Msa0455680:intron | 15.0% |
| !! | TTGGAATAAAAATAAAAAGT+GGG | + | chr3_3:48709216-48709235 | None:intergenic | 15.0% |
| !! | ATTGGAATAAAAATAAAAAG+TGG | + | chr3_3:48709217-48709236 | None:intergenic | 15.0% |
| !! | AAAAAAAATCAAAAATCCAT+GGG | + | chr3_3:48709536-48709555 | None:intergenic | 15.0% |
| !! | AAAAAAAAATCAAAAATCCA+TGG | + | chr3_3:48709537-48709556 | None:intergenic | 15.0% |
| !!! | GTTTATGATTTTAGAATTTA+GGG | + | chr3_3:48709842-48709861 | None:intergenic | 15.0% |
| !!! | TGTTTATGATTTTAGAATTT+AGG | + | chr3_3:48709843-48709862 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTTAATTTTCG+AGG | + | chr3_3:48710220-48710239 | None:intergenic | 15.0% |
| !! | TTATATAAATATGTATATGC+GGG | - | chr3_3:48710341-48710360 | Msa0455680:intron | 15.0% |
| !! | TATATATATATATAAGAGTG+TGG | + | chr3_3:48710652-48710671 | None:intergenic | 15.0% |
| !! | AATTTACGTAATTTATTAAC+GGG | - | chr3_3:48710745-48710764 | Msa0455680:intron | 15.0% |
| !!! | TTTTTATGTAATTCAATTAG+GGG | + | chr3_3:48710938-48710957 | None:intergenic | 15.0% |
| !!! | GTTTTTATGTAATTCAATTA+GGG | + | chr3_3:48710939-48710958 | None:intergenic | 15.0% |
| !!! | AGTTTTTATGTAATTCAATT+AGG | + | chr3_3:48710940-48710959 | None:intergenic | 15.0% |
| !!! | TTTAAAGTAGAAATTTTATC+TGG | - | chr3_3:48711342-48711361 | Msa0455680:intron | 15.0% |
| !!! | TTAAAGTAGAAATTTTATCT+GGG | - | chr3_3:48711343-48711362 | Msa0455680:intron | 15.0% |
| !!! | AGCATTTTAATGTAAAATTT+TGG | + | chr3_3:48713145-48713164 | None:intergenic | 15.0% |
| !! | TATGAATATATAGAAGCAAA+AGG | - | chr3_3:48707730-48707749 | Msa0455680:CDS | 20.0% |
| !! | ATGAATATATAGAAGCAAAA+GGG | - | chr3_3:48707731-48707750 | Msa0455680:CDS | 20.0% |
| !!! | TTTTCTTCAAATTATGCAAT+AGG | - | chr3_3:48707820-48707839 | Msa0455680:CDS | 20.0% |
| !!! | CTTAATTTGTTGTTACTTTA+TGG | - | chr3_3:48708168-48708187 | Msa0455680:intron | 20.0% |
| !! | GAAGATATCATCAAATTAAT+GGG | - | chr3_3:48708190-48708209 | Msa0455680:intron | 20.0% |
| !! | GATACCATTAATTAATTGTT+AGG | - | chr3_3:48708427-48708446 | Msa0455680:intron | 20.0% |
| !! | CTATGATGACTTTATATTTA+AGG | + | chr3_3:48708819-48708838 | None:intergenic | 20.0% |
| !!! | TATTTTTGAAAGTGTATTTG+TGG | + | chr3_3:48708990-48709009 | None:intergenic | 20.0% |
| !!! | AATGGATTATGAAATTTGAA+TGG | + | chr3_3:48709630-48709649 | None:intergenic | 20.0% |
| !!! | TAAGAATCTTGATTTTTGAT+TGG | + | chr3_3:48709660-48709679 | None:intergenic | 20.0% |
| !! | TGTAAGAATCATATCTATTA+TGG | + | chr3_3:48709708-48709727 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTGGATGTTTATT+TGG | + | chr3_3:48709781-48709800 | None:intergenic | 20.0% |
| !!! | ATTTTAGAGGGTATTTTATT+TGG | + | chr3_3:48709812-48709831 | None:intergenic | 20.0% |
| !! | ATAAACAAATAATCATGCTA+AGG | - | chr3_3:48709856-48709875 | Msa0455680:intron | 20.0% |
| !!! | TCTTTTTATAATTAAAGTGC+GGG | + | chr3_3:48710085-48710104 | None:intergenic | 20.0% |
| !!! | GTCTTTTTATAATTAAAGTG+CGG | + | chr3_3:48710086-48710105 | None:intergenic | 20.0% |
| !!! | TGAGTTGCTTTAAAAAAAAT+TGG | + | chr3_3:48710144-48710163 | None:intergenic | 20.0% |
| !! | TCATAAAATAGTAGAAATCA+TGG | - | chr3_3:48710161-48710180 | Msa0455680:intron | 20.0% |
| !!! | TTAATTTTCGAGGAATATTT+TGG | + | chr3_3:48710210-48710229 | None:intergenic | 20.0% |
| !!! | CTATTAGGTTTTATTCTATT+AGG | - | chr3_3:48711590-48711609 | Msa0455680:intron | 20.0% |
| !!! | TAAGATGTTTAAAATGTGAT+CGG | + | chr3_3:48712384-48712403 | None:intergenic | 20.0% |
| !!! | TAAATAACTTTTACCTTATG+CGG | - | chr3_3:48712680-48712699 | Msa0455680:CDS | 20.0% |
| !! | ATAAAAAAACCACTTAATAG+CGG | + | chr3_3:48712752-48712771 | None:intergenic | 20.0% |
| !! | ATCTACACATACATATTATT+AGG | + | chr3_3:48712797-48712816 | None:intergenic | 20.0% |
| !! | AAGATTTAATTAAATGGTGT+TGG | + | chr3_3:48713024-48713043 | None:intergenic | 20.0% |
| !!! | TAATGTAAAATTTTGGTTAC+CGG | + | chr3_3:48713138-48713157 | None:intergenic | 20.0% |
| !!! | ATTAAAATGCTTTGTTCTTA+AGG | - | chr3_3:48713154-48713173 | Msa0455680:intron | 20.0% |
| !!! | TTAAAATGCTTTGTTCTTAA+GGG | - | chr3_3:48713155-48713174 | Msa0455680:intron | 20.0% |
| !!! | AAATTGTACATCAATTTTAC+TGG | + | chr3_3:48713237-48713256 | None:intergenic | 20.0% |
| !! | ATGTTTATAATTGTATCAGA+AGG | + | chr3_3:48713356-48713375 | None:intergenic | 20.0% |
| ! | TTGTGACATATCTTCTTTAT+TGG | - | chr3_3:48707471-48707490 | Msa0455680:intron | 25.0% |
| ! | TGTGACATATCTTCTTTATT+GGG | - | chr3_3:48707472-48707491 | Msa0455680:intron | 25.0% |
| ! | CTAAAATACCTTATGTTACA+AGG | + | chr3_3:48707526-48707545 | None:intergenic | 25.0% |
| !! | GAGCAAACAAATTTCAATTT+TGG | - | chr3_3:48707693-48707712 | Msa0455680:three_prime_UTR | 25.0% |
| ! | TCCAAGTACTAGAATTAAAA+GGG | + | chr3_3:48708020-48708039 | None:intergenic | 25.0% |
| ! | ATCCAAGTACTAGAATTAAA+AGG | + | chr3_3:48708021-48708040 | None:intergenic | 25.0% |
| ! | GGAAGATATCATCAAATTAA+TGG | - | chr3_3:48708189-48708208 | Msa0455680:intron | 25.0% |
| ! | AAACAAACAATGAAGAAAAC+AGG | - | chr3_3:48708253-48708272 | Msa0455680:intron | 25.0% |
| ! | TTGGCCTAACAATTAATTAA+TGG | + | chr3_3:48708434-48708453 | None:intergenic | 25.0% |
| ! | TCTATCTTGAAAGTTCTATT+TGG | + | chr3_3:48708453-48708472 | None:intergenic | 25.0% |
| !! | ATCATAGTTTCATGATTTTC+CGG | - | chr3_3:48708832-48708851 | Msa0455680:intron | 25.0% |
| !!! | TTTTTATGAAGTATTGTTGG+TGG | + | chr3_3:48708959-48708978 | None:intergenic | 25.0% |
| ! | AACTTACAACAATTTCACAA+GGG | + | chr3_3:48709244-48709263 | None:intergenic | 25.0% |
| ! | AAACTTACAACAATTTCACA+AGG | + | chr3_3:48709245-48709264 | None:intergenic | 25.0% |
| ! | TTACTTACTCACTGTATATT+AGG | + | chr3_3:48709321-48709340 | None:intergenic | 25.0% |
| ! | ATTGAATTCATTGATGTCAA+TGG | - | chr3_3:48709369-48709388 | Msa0455680:intron | 25.0% |
| !!! | CTTTAGAAGTTGAATTTTGT+AGG | + | chr3_3:48709589-48709608 | None:intergenic | 25.0% |
| ! | TGAATGGAATATGTTATGTA+TGG | + | chr3_3:48709614-48709633 | None:intergenic | 25.0% |
| !!! | TTTTTGATTGGATTATGGAA+TGG | + | chr3_3:48709648-48709667 | None:intergenic | 25.0% |
| !!! | CTTGATTTTTGATTGGATTA+TGG | + | chr3_3:48709653-48709672 | None:intergenic | 25.0% |
| !! | TTGGATGTTTATTTGGATTT+TGG | + | chr3_3:48709774-48709793 | None:intergenic | 25.0% |
| !!! | TTGGAGATTTCTATGTTTTT+TGG | + | chr3_3:48709793-48709812 | None:intergenic | 25.0% |
| !!! | AAATACCCTCTAAAATTAGA+AGG | - | chr3_3:48709816-48709835 | Msa0455680:intron | 25.0% |
| ! | GAAGAAAAAAAAAGAGATGA+AGG | - | chr3_3:48709886-48709905 | Msa0455680:intron | 25.0% |
| ! | GCTAAACCTAAAAACTAATA+CGG | + | chr3_3:48710255-48710274 | None:intergenic | 25.0% |
| ! | TATATATATAGACACACACA+TGG | - | chr3_3:48710712-48710731 | Msa0455680:intron | 25.0% |
| ! | ACTTCTTATCATTTCCTTTA+GGG | + | chr3_3:48711323-48711342 | None:intergenic | 25.0% |
| ! | AACTTCTTATCATTTCCTTT+AGG | + | chr3_3:48711324-48711343 | None:intergenic | 25.0% |
| !!! | AATACCCTTTTAAAAATACG+AGG | - | chr3_3:48711518-48711537 | Msa0455680:intron | 25.0% |
| ! | AAAATTGCTTCTATTTCCTA+AGG | - | chr3_3:48711546-48711565 | Msa0455680:intron | 25.0% |
| !! | AACTTGAGTATTTTCCAATA+GGG | - | chr3_3:48711700-48711719 | Msa0455680:intron | 25.0% |
| ! | ATCATTGTTAACATCTACTT+TGG | + | chr3_3:48712216-48712235 | None:intergenic | 25.0% |
| !! | ATAATAGCTATGTTACTTAC+CGG | + | chr3_3:48712272-48712291 | None:intergenic | 25.0% |
| ! | GTGAAGTTAATTAAATAAGC+CGG | - | chr3_3:48712511-48712530 | Msa0455680:CDS | 25.0% |
| !! | TGAATGATGAAGATTTTTAC+TGG | + | chr3_3:48712652-48712671 | None:intergenic | 25.0% |
| ! | TAAAAAAACCACTTAATAGC+GGG | + | chr3_3:48712751-48712770 | None:intergenic | 25.0% |
| ! | TTCTTCTTTGTCTTTGTATT+TGG | + | chr3_3:48712872-48712891 | None:intergenic | 25.0% |
| !! | ACATTTTAGATGGAACATAT+GGG | + | chr3_3:48712914-48712933 | None:intergenic | 25.0% |
| !! | TAAAATGCTTTGTTCTTAAG+GGG | - | chr3_3:48713156-48713175 | Msa0455680:intron | 25.0% |
| ! | AACACTAAGAATACACTTAA+TGG | + | chr3_3:48713294-48713313 | None:intergenic | 25.0% |
| GTGACATATCTTCTTTATTG+GGG | - | chr3_3:48707473-48707492 | Msa0455680:intron | 30.0% | |
| GCACATGAGAAATAATTCAT+TGG | + | chr3_3:48707504-48707523 | None:intergenic | 30.0% | |
| AATTTCATCTTCAAGCAACA+TGG | - | chr3_3:48707792-48707811 | Msa0455680:CDS | 30.0% | |
| GCAATTCTAGTCAAAAATGA+AGG | + | chr3_3:48707910-48707929 | None:intergenic | 30.0% | |
| TCTTGATCTTGATATTCTCA+TGG | + | chr3_3:48707932-48707951 | None:intergenic | 30.0% | |
| ! | AGAGTGTTTCATTACCAAAA+TGG | - | chr3_3:48707970-48707989 | Msa0455680:intron | 30.0% |
| !! | ACCCTTTTAATTCTAGTACT+TGG | - | chr3_3:48708016-48708035 | Msa0455680:intron | 30.0% |
| TGGATAGTTGGTTATGATAT+TGG | - | chr3_3:48708138-48708157 | Msa0455680:intron | 30.0% | |
| CATCAAATTAATGGGACTAA+TGG | - | chr3_3:48708198-48708217 | Msa0455680:intron | 30.0% | |
| !! | TTTGTTGTTCCAAATCAGAA+AGG | + | chr3_3:48708236-48708255 | None:intergenic | 30.0% |
| TGATGTCATATTAAAGCTAG+TGG | - | chr3_3:48708396-48708415 | Msa0455680:intron | 30.0% | |
| ! | CCTATTTTCTAACCTTCTAA+GGG | + | chr3_3:48708667-48708686 | None:intergenic | 30.0% |
| CCTTAGAAGGTTAGAAAATA+GGG | - | chr3_3:48708665-48708684 | Msa0455680:CDS | 30.0% | |
| ! | TCATAGTTTCATGATTTTCC+GGG | - | chr3_3:48708833-48708852 | Msa0455680:intron | 30.0% |
| ! | TTTGAAAGTGTATTTGTGGA+AGG | + | chr3_3:48708986-48709005 | None:intergenic | 30.0% |
| CAATACTCTAACATTGTGTT+TGG | - | chr3_3:48709037-48709056 | Msa0455680:intron | 30.0% | |
| ATTGTTGTAAGTTTGCAACA+TGG | - | chr3_3:48709251-48709270 | Msa0455680:intron | 30.0% | |
| TACTCACTGTATATTAGGAA+AGG | + | chr3_3:48709316-48709335 | None:intergenic | 30.0% | |
| ! | ATGGTATGATGAATTTGCTT+GGG | + | chr3_3:48709689-48709708 | None:intergenic | 30.0% |
| ! | TATGGTATGATGAATTTGCT+TGG | + | chr3_3:48709690-48709709 | None:intergenic | 30.0% |
| ATAATTAAAGTGCGGGTAAT+GGG | + | chr3_3:48710078-48710097 | None:intergenic | 30.0% | |
| TATAATTAAAGTGCGGGTAA+TGG | + | chr3_3:48710079-48710098 | None:intergenic | 30.0% | |
| !!! | CGATTACCGTATTAGTTTTT+AGG | - | chr3_3:48710246-48710265 | Msa0455680:intron | 30.0% |
| AATTACCCGCAAATTTAGAT+GGG | + | chr3_3:48710408-48710427 | None:intergenic | 30.0% | |
| TAATTACCCGCAAATTTAGA+TGG | + | chr3_3:48710409-48710428 | None:intergenic | 30.0% | |
| ! | ACGTAATTTATTAACGGGTA+CGG | - | chr3_3:48710750-48710769 | Msa0455680:intron | 30.0% |
| TTATGTAATTCAATTAGGGG+TGG | + | chr3_3:48710935-48710954 | None:intergenic | 30.0% | |
| ! | AGTAGATTTGATGTGTTGTT+TGG | + | chr3_3:48711213-48711232 | None:intergenic | 30.0% |
| AGAGAGAAATATGTGAGAAA+TGG | + | chr3_3:48711236-48711255 | None:intergenic | 30.0% | |
| !!! | GAAGTTTTGAAGAGAGAAAT+AGG | + | chr3_3:48711282-48711301 | None:intergenic | 30.0% |
| ! | TTGTTTGTTAAAGTGTCCTT+AGG | - | chr3_3:48711476-48711495 | Msa0455680:intron | 30.0% |
| ! | TGTTTGTTAAAGTGTCCTTA+GGG | - | chr3_3:48711477-48711496 | Msa0455680:intron | 30.0% |
| ! | GAACTTGAGTATTTTCCAAT+AGG | - | chr3_3:48711699-48711718 | Msa0455680:intron | 30.0% |
| !! | GATTTTGATATGAGCAGAAA+AGG | - | chr3_3:48711725-48711744 | Msa0455680:intron | 30.0% |
| ! | TAGAGCTTTTCTTTGCAATA+TGG | - | chr3_3:48711925-48711944 | Msa0455680:intron | 30.0% |
| ! | TTTGCAATATGGTTTGTGAT+GGG | - | chr3_3:48711936-48711955 | Msa0455680:intron | 30.0% |
| GCAACAAAAACAGTAGAAAA+GGG | + | chr3_3:48712067-48712086 | None:intergenic | 30.0% | |
| AGCAACAAAAACAGTAGAAA+AGG | + | chr3_3:48712068-48712087 | None:intergenic | 30.0% | |
| AAATGTGATCGGTCAAAATT+AGG | + | chr3_3:48712373-48712392 | None:intergenic | 30.0% | |
| TTACGATAGACTAATATCTC+CGG | + | chr3_3:48712533-48712552 | None:intergenic | 30.0% | |
| AAACACCTTGTATGTGATTA+AGG | - | chr3_3:48712579-48712598 | Msa0455680:CDS | 30.0% | |
| AACACCTTGTATGTGATTAA+GGG | - | chr3_3:48712580-48712599 | Msa0455680:CDS | 30.0% | |
| CCTTATAGTGAAAATCTCTT+GGG | + | chr3_3:48712626-48712645 | None:intergenic | 30.0% | |
| TCCTTATAGTGAAAATCTCT+TGG | + | chr3_3:48712627-48712646 | None:intergenic | 30.0% | |
| ACATTTATCTTTACCGCATA+AGG | + | chr3_3:48712696-48712715 | None:intergenic | 30.0% | |
| ATGCGGTAAAGATAAATGTA+TGG | - | chr3_3:48712697-48712716 | Msa0455680:CDS | 30.0% | |
| !!! | CAATTTTGTGTTGTTTGTTG+TGG | - | chr3_3:48712821-48712840 | Msa0455680:CDS | 30.0% |
| ACAAAGACAAAGAAGAAGTT+AGG | - | chr3_3:48712875-48712894 | Msa0455680:CDS | 30.0% | |
| ! | CACATTTTAGATGGAACATA+TGG | + | chr3_3:48712915-48712934 | None:intergenic | 30.0% |
| ! | ACTGATCAACACATTTTAGA+TGG | + | chr3_3:48712924-48712943 | None:intergenic | 30.0% |
| ! | ATCTAAAATGTGTTGATCAG+TGG | - | chr3_3:48712923-48712942 | Msa0455680:five_prime_UTR | 30.0% |
| TCTGTAATCCAAATATTGTG+AGG | - | chr3_3:48713264-48713283 | Msa0455680:five_prime_UTR | 30.0% | |
| AGATTGACATTGCAATCTTA+AGG | - | chr3_3:48713315-48713334 | Msa0455680:five_prime_UTR | 30.0% | |
| AAGTTCAGTAGTCAGATTCT+TGG | - | chr3_3:48707338-48707357 | Msa0455680:three_prime_UTR | 35.0% | |
| GTAAAGTTAGAGACTCAAGA+GGG | + | chr3_3:48707367-48707386 | None:intergenic | 35.0% | |
| ! | GAAAGAAGAGAAGGTATGAA+GGG | + | chr3_3:48707402-48707421 | None:intergenic | 35.0% |
| ATATGAAGGGAAAGAAGAGA+AGG | + | chr3_3:48707411-48707430 | None:intergenic | 35.0% | |
| ACATATCTTCTTTATTGGGG+TGG | - | chr3_3:48707476-48707495 | Msa0455680:intron | 35.0% | |
| ! | TTTAGGACCTAAAGAAGACT+TGG | - | chr3_3:48707657-48707676 | Msa0455680:three_prime_UTR | 35.0% |
| TGATCTTGAGATAAGGTAGT+TGG | + | chr3_3:48707886-48707905 | None:intergenic | 35.0% | |
| ! | TGAAGGTTGATCTTGAGATA+AGG | + | chr3_3:48707893-48707912 | None:intergenic | 35.0% |
| TTAGAACCAAGATCAGATCT+TGG | + | chr3_3:48707997-48708016 | None:intergenic | 35.0% | |
| AACAAGCACAGCATTTACTT+TGG | - | chr3_3:48708074-48708093 | Msa0455680:intron | 35.0% | |
| CAAAGAATGAGAAACCTGTT+TGG | - | chr3_3:48708103-48708122 | Msa0455680:intron | 35.0% | |
| GAAAACAGGTATTTCACTCT+TGG | - | chr3_3:48708267-48708286 | Msa0455680:intron | 35.0% | |
| TTTCCATGTGCCTTATCTAA+GGG | + | chr3_3:48708639-48708658 | None:intergenic | 35.0% | |
| ! | TTTTCCATGTGCCTTATCTA+AGG | + | chr3_3:48708640-48708659 | None:intergenic | 35.0% |
| TTAGATAAGGCACATGGAAA+AGG | - | chr3_3:48708639-48708658 | Msa0455680:CDS | 35.0% | |
| CCCTTAGAAGGTTAGAAAAT+AGG | - | chr3_3:48708664-48708683 | Msa0455680:CDS | 35.0% | |
| ! | CCCTATTTTCTAACCTTCTA+AGG | + | chr3_3:48708668-48708687 | None:intergenic | 35.0% |
| ! | CATAGTTTCATGATTTTCCG+GGG | - | chr3_3:48708834-48708853 | Msa0455680:intron | 35.0% |
| GGAAAAGAGTAAAGGAAAGT+AGG | - | chr3_3:48708855-48708874 | Msa0455680:intron | 35.0% | |
| TCTAACATTGTGTTTGGTTG+AGG | - | chr3_3:48709043-48709062 | Msa0455680:intron | 35.0% | |
| AGAAGAGAGATAAAAACACG+TGG | - | chr3_3:48709149-48709168 | Msa0455680:intron | 35.0% | |
| GAAGAGAGATAAAAACACGT+GGG | - | chr3_3:48709150-48709169 | Msa0455680:intron | 35.0% | |
| ! | ACTTTGGAGAGACTAAAAAC+AGG | + | chr3_3:48709183-48709202 | None:intergenic | 35.0% |
| !! | CAATTTCACAAGGGCATTAT+TGG | + | chr3_3:48709235-48709254 | None:intergenic | 35.0% |
| GGTACCATATTTATCCAATG+GGG | + | chr3_3:48709432-48709451 | None:intergenic | 35.0% | |
| GGGTACCATATTTATCCAAT+GGG | + | chr3_3:48709433-48709452 | None:intergenic | 35.0% | |
| ! | TAGGGCCTTCTAATTTTAGA+GGG | + | chr3_3:48709824-48709843 | None:intergenic | 35.0% |
| ! | TTAGGGCCTTCTAATTTTAG+AGG | + | chr3_3:48709825-48709844 | None:intergenic | 35.0% |
| !!! | TTTTTTACAAACGCGGGTAT+GGG | + | chr3_3:48709968-48709987 | None:intergenic | 35.0% |
| !!! | ATTTTTTACAAACGCGGGTA+TGG | + | chr3_3:48709969-48709988 | None:intergenic | 35.0% |
| !!! | ACGGACATTTTTTACAAACG+CGG | + | chr3_3:48709975-48709994 | None:intergenic | 35.0% |
| ! | AAATATGTATATGCGGGTTG+CGG | - | chr3_3:48710347-48710366 | Msa0455680:intron | 35.0% |
| GCTAGGTTATCATCTTCTTA+GGG | + | chr3_3:48710528-48710547 | None:intergenic | 35.0% | |
| TTTAACTACCCGTTCGTATA+TGG | + | chr3_3:48710816-48710835 | None:intergenic | 35.0% | |
| !! | CGCACCTCGTATTTTTAAAA+GGG | + | chr3_3:48711525-48711544 | None:intergenic | 35.0% |
| !! | TCGCACCTCGTATTTTTAAA+AGG | + | chr3_3:48711526-48711545 | None:intergenic | 35.0% |
| TTGCTTCTATTTCCTAAGGT+AGG | - | chr3_3:48711550-48711569 | Msa0455680:intron | 35.0% | |
| TCCAAATGGAAGAGACTATT+AGG | - | chr3_3:48711575-48711594 | Msa0455680:intron | 35.0% | |
| ACCTAATAGTCTCTTCCATT+TGG | + | chr3_3:48711579-48711598 | None:intergenic | 35.0% | |
| !! | TACAAAACCGACTTGTAAGA+TGG | - | chr3_3:48711626-48711645 | Msa0455680:intron | 35.0% |
| CATATCAAAATCGACCCTAT+TGG | + | chr3_3:48711717-48711736 | None:intergenic | 35.0% | |
| AGTTGTTGAACGAATCAAAG+TGG | - | chr3_3:48711777-48711796 | Msa0455680:intron | 35.0% | |
| ! | CTTTGCAATATGGTTTGTGA+TGG | - | chr3_3:48711935-48711954 | Msa0455680:intron | 35.0% |
| TCTGCATCATTCTTCTTGTT+TGG | - | chr3_3:48712021-48712040 | Msa0455680:intron | 35.0% | |
| CAATGTTCATGTTGTAACCA+AGG | + | chr3_3:48712121-48712140 | None:intergenic | 35.0% | |
| CTTGGTTACAACATGAACAT+TGG | - | chr3_3:48712119-48712138 | Msa0455680:intron | 35.0% | |
| !! | AACATTGGTTCCTCTTCTAA+AGG | - | chr3_3:48712134-48712153 | Msa0455680:intron | 35.0% |
| AAATCTCACAACTTCCATCT+TGG | - | chr3_3:48712171-48712190 | Msa0455680:intron | 35.0% | |
| TCCATCTTGGAGATTTAAAG+TGG | - | chr3_3:48712184-48712203 | Msa0455680:intron | 35.0% | |
| ACACCTTGTATGTGATTAAG+GGG | - | chr3_3:48712581-48712600 | Msa0455680:CDS | 35.0% | |
| ! | CCCAAGAGATTTTCACTATA+AGG | - | chr3_3:48712623-48712642 | Msa0455680:CDS | 35.0% |
| TTTGCAAACAAGGACTTCAA+AGG | - | chr3_3:48712971-48712990 | Msa0455680:five_prime_UTR | 35.0% | |
| CCAAAGTGGAGAAAATCTTT+GGG | + | chr3_3:48713077-48713096 | None:intergenic | 35.0% | |
| ACCAAAGTGGAGAAAATCTT+TGG | + | chr3_3:48713078-48713097 | None:intergenic | 35.0% | |
| CATGTACAGAAATAGTTCAC+CGG | - | chr3_3:48713116-48713135 | Msa0455680:intron | 35.0% | |
| AGCTTGTGTGAAAAAGTAAC+TGG | + | chr3_3:48713188-48713207 | None:intergenic | 35.0% | |
| !!! | ACTTTTTCACACAAGCTTGT+TGG | - | chr3_3:48713191-48713210 | Msa0455680:five_prime_UTR | 35.0% |
| ATGGACAACCTCACAATATT+TGG | + | chr3_3:48713275-48713294 | None:intergenic | 35.0% | |
| GGTAAAGTTAGAGACTCAAG+AGG | + | chr3_3:48707368-48707387 | None:intergenic | 40.0% | |
| ! | GTATGAAGGGTATGTCAAGA+AGG | + | chr3_3:48707389-48707408 | None:intergenic | 40.0% |
| ! | GGAAAGAAGAGAAGGTATGA+AGG | + | chr3_3:48707403-48707422 | None:intergenic | 40.0% |
| CTCATGTGCCTTGTAACATA+AGG | - | chr3_3:48707515-48707534 | Msa0455680:intron | 40.0% | |
| CCTCATACCAAGTCTTCTTT+AGG | + | chr3_3:48707667-48707686 | None:intergenic | 40.0% | |
| ! | CCTAAAGAAGACTTGGTATG+AGG | - | chr3_3:48707664-48707683 | Msa0455680:three_prime_UTR | 40.0% |
| TGCAATAGGAGAAAACAGCA+TGG | - | chr3_3:48707834-48707853 | Msa0455680:CDS | 40.0% | |
| TGAGATAAGGTAGTTGGTTG+AGG | + | chr3_3:48707880-48707899 | None:intergenic | 40.0% | |
| ! | GATCAGATCTTGGTCCATTT+TGG | + | chr3_3:48707987-48708006 | None:intergenic | 40.0% |
| AATGGACCAAGATCTGATCT+TGG | - | chr3_3:48707988-48708007 | Msa0455680:intron | 40.0% | |
| ! | TTTTCCGGGGAAAAGAGTAA+AGG | - | chr3_3:48708847-48708866 | Msa0455680:intron | 40.0% |
| ! | CTTTCCTTTACTCTTTTCCC+CGG | + | chr3_3:48708854-48708873 | None:intergenic | 40.0% |
| ! | GACCAAACATCTCATTGACT+TGG | - | chr3_3:48708899-48708918 | Msa0455680:intron | 40.0% |
| TCTCCATGTACCATATTGAC+CGG | + | chr3_3:48708926-48708945 | None:intergenic | 40.0% | |
| GTGTTTGGTTGAGGTGAAAT+AGG | - | chr3_3:48709052-48709071 | Msa0455680:intron | 40.0% | |
| ATAGGAAAGAGAGAAAGAGC+AGG | - | chr3_3:48709070-48709089 | Msa0455680:intron | 40.0% | |
| AGTTCAGAACTTCTCCTGTT+TGG | - | chr3_3:48709110-48709129 | Msa0455680:intron | 40.0% | |
| CTTTCTCTTTGCAACCAAAC+AGG | + | chr3_3:48709127-48709146 | None:intergenic | 40.0% | |
| CAACATGGCACAGACAAAAA+CGG | - | chr3_3:48709266-48709285 | Msa0455680:intron | 40.0% | |
| ! | ACAGACAAAAACGGAAGCAT+CGG | - | chr3_3:48709275-48709294 | Msa0455680:intron | 40.0% |
| ACCATATTTATCCAATGGGG+CGG | + | chr3_3:48709429-48709448 | None:intergenic | 40.0% | |
| CGGGTACCATATTTATCCAA+TGG | + | chr3_3:48709434-48709453 | None:intergenic | 40.0% | |
| CACTGGTATTTAGATACCCA+CGG | - | chr3_3:48709497-48709516 | Msa0455680:intron | 40.0% | |
| AGAGATGAAGGAGAAGATGT+AGG | - | chr3_3:48709898-48709917 | Msa0455680:intron | 40.0% | |
| GAGATGAAGGAGAAGATGTA+GGG | - | chr3_3:48709899-48709918 | Msa0455680:intron | 40.0% | |
| ACTATAGTACCCTACCCATT+GGG | + | chr3_3:48709938-48709957 | None:intergenic | 40.0% | |
| TACTATAGTACCCTACCCAT+TGG | + | chr3_3:48709939-48709958 | None:intergenic | 40.0% | |
| ! | TTTTTACAAACGCGGGTATG+GGG | + | chr3_3:48709967-48709986 | None:intergenic | 40.0% |
| !!! | CGGACATTTTTTACAAACGC+GGG | + | chr3_3:48709974-48709993 | None:intergenic | 40.0% |
| ! | AATATGTATATGCGGGTTGC+GGG | - | chr3_3:48710348-48710367 | Msa0455680:intron | 40.0% |
| AATTTAGATGGGTATGGGTG+CGG | + | chr3_3:48710397-48710416 | None:intergenic | 40.0% | |
| CCGCAAATTTAGATGGGTAT+GGG | + | chr3_3:48710402-48710421 | None:intergenic | 40.0% | |
| CCCATACCCATCTAAATTTG+CGG | - | chr3_3:48710399-48710418 | Msa0455680:intron | 40.0% | |
| CCATACCCATCTAAATTTGC+GGG | - | chr3_3:48710400-48710419 | Msa0455680:intron | 40.0% | |
| !! | AACCCTGCTTTTATGGGTAT+GGG | + | chr3_3:48710444-48710463 | None:intergenic | 40.0% |
| !! | AAACCCTGCTTTTATGGGTA+TGG | + | chr3_3:48710445-48710464 | None:intergenic | 40.0% |
| !! | GGGTAAAACCCTGCTTTTAT+GGG | + | chr3_3:48710450-48710469 | None:intergenic | 40.0% |
| !! | AGGGTAAAACCCTGCTTTTA+TGG | + | chr3_3:48710451-48710470 | None:intergenic | 40.0% |
| AAAAATACCCGCAATGGGTA+GGG | + | chr3_3:48710470-48710489 | None:intergenic | 40.0% | |
| AAAAAATACCCGCAATGGGT+AGG | + | chr3_3:48710471-48710490 | None:intergenic | 40.0% | |
| ATCTTCTTAGGGATGGCAAT+TGG | + | chr3_3:48710517-48710536 | None:intergenic | 40.0% | |
| GGTTATCATCTTCTTAGGGA+TGG | + | chr3_3:48710524-48710543 | None:intergenic | 40.0% | |
| GGCTAGGTTATCATCTTCTT+AGG | + | chr3_3:48710529-48710548 | None:intergenic | 40.0% | |
| ATACCCGTTTATTATACCCG+CGG | - | chr3_3:48710835-48710854 | Msa0455680:intron | 40.0% | |
| TATCCGCGGGTATAATAAAC+GGG | + | chr3_3:48710841-48710860 | None:intergenic | 40.0% | |
| GTATCCGCGGGTATAATAAA+CGG | + | chr3_3:48710842-48710861 | None:intergenic | 40.0% | |
| !! | CATTTCCTTTAGGGTGTGTT+TGG | + | chr3_3:48711314-48711333 | None:intergenic | 40.0% |
| !! | AAAACCGACTTGTAAGATGG+AGG | - | chr3_3:48711629-48711648 | Msa0455680:intron | 40.0% |
| TGACTAGAGTTTACAAGGAG+TGG | + | chr3_3:48711657-48711676 | None:intergenic | 40.0% | |
| AGACGTGACTAGAGTTTACA+AGG | + | chr3_3:48711662-48711681 | None:intergenic | 40.0% | |
| TTGTACCATGCAGTGTATAC+AGG | - | chr3_3:48711868-48711887 | Msa0455680:intron | 40.0% | |
| ! | GGTTTGTGATGGGAAATGTT+TGG | - | chr3_3:48711946-48711965 | Msa0455680:intron | 40.0% |
| TGTTCCAAAACGTGAGTCAA+AGG | + | chr3_3:48711973-48711992 | None:intergenic | 40.0% | |
| ! | ATGCAGAGAACTTGGAGTTT+TGG | + | chr3_3:48712008-48712027 | None:intergenic | 40.0% |
| GAAGAATGATGCAGAGAACT+TGG | + | chr3_3:48712016-48712035 | None:intergenic | 40.0% | |
| ! | ATCAGATGCACCTTTAGAAG+AGG | + | chr3_3:48712147-48712166 | None:intergenic | 40.0% |
| ! | GCCACTTTAAATCTCCAAGA+TGG | + | chr3_3:48712188-48712207 | None:intergenic | 40.0% |
| !! | TATGTTACTTACCGGCTCTT+CGG | + | chr3_3:48712264-48712283 | None:intergenic | 40.0% |
| CATCCCCTTAATCACATACA+AGG | + | chr3_3:48712587-48712606 | None:intergenic | 40.0% | |
| GTGAAAATCTCTTGGGACTT+GGG | + | chr3_3:48712619-48712638 | None:intergenic | 40.0% | |
| AGTGAAAATCTCTTGGGACT+TGG | + | chr3_3:48712620-48712639 | None:intergenic | 40.0% | |
| ! | GATTTGTTCCCGCTATTAAG+TGG | - | chr3_3:48712740-48712759 | Msa0455680:CDS | 40.0% |
| ACAGGAATGTTGCATATGCT+TGG | - | chr3_3:48712846-48712865 | Msa0455680:CDS | 40.0% | |
| AGATGGAACATATGGGAACA+TGG | + | chr3_3:48712907-48712926 | None:intergenic | 40.0% | |
| ! | GAAGTCCTTGTTTGCAAAGA+GGG | + | chr3_3:48712969-48712988 | None:intergenic | 40.0% |
| ! | TGAAGTCCTTGTTTGCAAAG+AGG | + | chr3_3:48712970-48712989 | None:intergenic | 40.0% |
| ! | CCCAAAGATTTTCTCCACTT+TGG | - | chr3_3:48713074-48713093 | Msa0455680:intron | 40.0% |
| ACTCACTCATGTAACCAAAG+TGG | + | chr3_3:48713091-48713110 | None:intergenic | 40.0% | |
| TAAGGTAGTTGGTTGAGGCA+TGG | + | chr3_3:48707875-48707894 | None:intergenic | 45.0% | |
| AGAAACCTGTTTGGCCTATG+AGG | - | chr3_3:48708112-48708131 | Msa0455680:intron | 45.0% | |
| GAAACCTGTTTGGCCTATGA+GGG | - | chr3_3:48708113-48708132 | Msa0455680:intron | 45.0% | |
| CCAACTATCCAAACCCTCAT+AGG | + | chr3_3:48708129-48708148 | None:intergenic | 45.0% | |
| CCTATGAGGGTTTGGATAGT+TGG | - | chr3_3:48708126-48708145 | Msa0455680:intron | 45.0% | |
| ! | TGCTCTTGGCCTTTCTGATT+TGG | - | chr3_3:48708224-48708243 | Msa0455680:intron | 45.0% |
| !! | ATGGAAAAGGTGCCCTTAGA+AGG | - | chr3_3:48708652-48708671 | Msa0455680:CDS | 45.0% |
| GGCCAAGTCAATGAGATGTT+TGG | + | chr3_3:48708904-48708923 | None:intergenic | 45.0% | |
| !! | AACATCTCATTGACTTGGCC+CGG | - | chr3_3:48708904-48708923 | Msa0455680:intron | 45.0% |
| CTCCATGTACCATATTGACC+GGG | + | chr3_3:48708925-48708944 | None:intergenic | 45.0% | |
| GAAAGAGCAGGCAGAGAAAA+AGG | - | chr3_3:48709082-48709101 | Msa0455680:intron | 45.0% | |
| GAGAGACTAAAAACAGGCGT+GGG | + | chr3_3:48709177-48709196 | None:intergenic | 45.0% | |
| ! | AGTGGGTTTCTTCGCTACTT+TGG | + | chr3_3:48709199-48709218 | None:intergenic | 45.0% |
| TTGATGTCAATGGCTATCCG+CGG | - | chr3_3:48709379-48709398 | Msa0455680:intron | 45.0% | |
| CATATTTATCCAATGGGGCG+GGG | + | chr3_3:48709427-48709446 | None:intergenic | 45.0% | |
| CCATATTTATCCAATGGGGC+GGG | + | chr3_3:48709428-48709447 | None:intergenic | 45.0% | |
| TCTCTATACGGGTAATCCAC+TGG | - | chr3_3:48709480-48709499 | Msa0455680:intron | 45.0% | |
| CGTGGGTATCTAAATACCAG+TGG | + | chr3_3:48709499-48709518 | None:intergenic | 45.0% | |
| TGAAGGAGAAGATGTAGGGA+TGG | - | chr3_3:48709903-48709922 | Msa0455680:intron | 45.0% | |
| AGAAGATGTAGGGATGGCAA+TGG | - | chr3_3:48709909-48709928 | Msa0455680:intron | 45.0% | |
| GAAGATGTAGGGATGGCAAT+GGG | - | chr3_3:48709910-48709929 | Msa0455680:intron | 45.0% | |
| ! | ATATGTATATGCGGGTTGCG+GGG | - | chr3_3:48710349-48710368 | Msa0455680:intron | 45.0% |
| ATTTAGATGGGTATGGGTGC+GGG | + | chr3_3:48710396-48710415 | None:intergenic | 45.0% | |
| CCCGCAAATTTAGATGGGTA+TGG | + | chr3_3:48710403-48710422 | None:intergenic | 45.0% | |
| ! | GCTTTTATGGGTATGGGCTT+GGG | + | chr3_3:48710438-48710457 | None:intergenic | 45.0% |
| ! | TGCTTTTATGGGTATGGGCT+TGG | + | chr3_3:48710439-48710458 | None:intergenic | 45.0% |
| AAGCCCATACCCATAAAAGC+AGG | - | chr3_3:48710438-48710457 | Msa0455680:intron | 45.0% | |
| AGCCCATACCCATAAAAGCA+GGG | - | chr3_3:48710439-48710458 | Msa0455680:intron | 45.0% | |
| CCGCAAAAAATACCCGCAAT+GGG | + | chr3_3:48710475-48710494 | None:intergenic | 45.0% | |
| !!! | CCCATTGCGGGTATTTTTTG+CGG | - | chr3_3:48710472-48710491 | Msa0455680:intron | 45.0% |
| !!! | CCATTGCGGGTATTTTTTGC+GGG | - | chr3_3:48710473-48710492 | Msa0455680:intron | 45.0% |
| !!! | TATTTTTTGCGGGTGCCCAT+CGG | - | chr3_3:48710483-48710502 | Msa0455680:intron | 45.0% |
| TAACCTAGCCGCAAAAGTAG+AGG | - | chr3_3:48710539-48710558 | Msa0455680:intron | 45.0% | |
| !! | CTTCCTCTCCTCTACTTTTG+CGG | + | chr3_3:48710550-48710569 | None:intergenic | 45.0% |
| ! | TTTGATGATACACGTACCCG+CGG | + | chr3_3:48710780-48710799 | None:intergenic | 45.0% |
| TTCGTATATGGACACGGACA+CGG | + | chr3_3:48710804-48710823 | None:intergenic | 45.0% | |
| TGTCCGTGTCCATATACGAA+CGG | - | chr3_3:48710804-48710823 | Msa0455680:intron | 45.0% | |
| TACCCGTTCGTATATGGACA+CGG | + | chr3_3:48710810-48710829 | None:intergenic | 45.0% | |
| ATAAAATCCGTCATGGGGAC+GGG | + | chr3_3:48710881-48710900 | None:intergenic | 45.0% | |
| GATAAAATCCGTCATGGGGA+CGG | + | chr3_3:48710882-48710901 | None:intergenic | 45.0% | |
| GCAAAAAAATTCGTACCCGC+GGG | + | chr3_3:48710913-48710932 | None:intergenic | 45.0% | |
| GGCAAAAAAATTCGTACCCG+CGG | + | chr3_3:48710914-48710933 | None:intergenic | 45.0% | |
| !! | CCTTTAGGGTGTGTTTGGTT+TGG | + | chr3_3:48711309-48711328 | None:intergenic | 45.0% |
| CCAAACCAAACACACCCTAA+AGG | - | chr3_3:48711306-48711325 | Msa0455680:intron | 45.0% | |
| AAGTGCTAACAAGTGCCCTA+AGG | + | chr3_3:48711495-48711514 | None:intergenic | 45.0% | |
| TCCTAAGGTAGGACTCCAAA+TGG | - | chr3_3:48711561-48711580 | Msa0455680:intron | 45.0% | |
| ! | TCCATTTGGAGTCCTACCTT+AGG | + | chr3_3:48711565-48711584 | None:intergenic | 45.0% |
| GTACTCCTGTATACACTGCA+TGG | + | chr3_3:48711876-48711895 | None:intergenic | 45.0% | |
| ! | TGGTCCTTTGACTCACGTTT+TGG | - | chr3_3:48711966-48711985 | Msa0455680:intron | 45.0% |
| !! | GTGTTGTTTGTTGTGGTGAC+AGG | - | chr3_3:48712828-48712847 | Msa0455680:CDS | 45.0% |
| !! | TATAAAAATAAATAAACATA+TGG | + | chr3_3:48708332-48708351 | None:intergenic | 5.0% |
| !!! | TATTTTTATAAATTTATATG+TGG | - | chr3_3:48708342-48708361 | Msa0455680:intron | 5.0% |
| !! | TTAAAATAAATTTGAATAAA+AGG | - | chr3_3:48711061-48711080 | Msa0455680:intron | 5.0% |
| !!! | TTAATAAATTTTTTTATTGT+AGG | - | chr3_3:48711119-48711138 | Msa0455680:intron | 5.0% |
| !!! | TAATAAATTTTTTTATTGTA+GGG | - | chr3_3:48711120-48711139 | Msa0455680:intron | 5.0% |
| !! | ATTGAAATAATTTATAAAAT+CGG | + | chr3_3:48712556-48712575 | None:intergenic | 5.0% |
| CAAACCCTCATAGGCCAAAC+AGG | + | chr3_3:48708120-48708139 | None:intergenic | 50.0% | |
| CTGTTTGGCCTATGAGGGTT+TGG | - | chr3_3:48708118-48708137 | Msa0455680:intron | 50.0% | |
| GGGACTAATGGAGATGCTCT+TGG | - | chr3_3:48708210-48708229 | Msa0455680:intron | 50.0% | |
| !! | TGCCTTATCTAAGGGCACCT+AGG | + | chr3_3:48708631-48708650 | None:intergenic | 50.0% |
| GTGCCCTTAGATAAGGCACA+TGG | - | chr3_3:48708633-48708652 | Msa0455680:CDS | 50.0% | |
| !! | TTGACTTGGCCCGGTCAATA+TGG | - | chr3_3:48708913-48708932 | Msa0455680:intron | 50.0% |
| GGAGAGACTAAAAACAGGCG+TGG | + | chr3_3:48709178-48709197 | None:intergenic | 50.0% | |
| TGATGTCAATGGCTATCCGC+GGG | - | chr3_3:48709380-48709399 | Msa0455680:intron | 50.0% | |
| TATCATACTACCCGTACCCG+CGG | + | chr3_3:48709399-48709418 | None:intergenic | 50.0% | |
| CCCGCCCCATTGGATAAATA+TGG | - | chr3_3:48709425-48709444 | Msa0455680:intron | 50.0% | |
| AGAGATACCCGCACGGATAT+GGG | + | chr3_3:48709465-48709484 | None:intergenic | 50.0% | |
| TAGAGATACCCGCACGGATA+TGG | + | chr3_3:48709466-48709485 | None:intergenic | 50.0% | |
| TCCGTGCGGGTATCTCTATA+CGG | - | chr3_3:48709468-48709487 | Msa0455680:intron | 50.0% | |
| CAAAAATCCATGGGAACGCG+CGG | + | chr3_3:48709527-48709546 | None:intergenic | 50.0% | |
| GATGGCAATGGGTACCCAAT+GGG | - | chr3_3:48709921-48709940 | Msa0455680:intron | 50.0% | |
| CAATGGGTACCCAATGGGTA+GGG | - | chr3_3:48709926-48709945 | Msa0455680:intron | 50.0% | |
| AGTTGTTACCCACGAGGGTA+CGG | + | chr3_3:48710006-48710025 | None:intergenic | 50.0% | |
| ACTGCAGTTGTTACCCACGA+GGG | + | chr3_3:48710011-48710030 | None:intergenic | 50.0% | |
| ACTTAGGTGCCCATAGGGTA+GGG | + | chr3_3:48710042-48710061 | None:intergenic | 50.0% | |
| !! | CGGGTAATGGGTACAGGTAT+GGG | + | chr3_3:48710066-48710085 | None:intergenic | 50.0% |
| !! | AAAGTGCGGGTAATGGGTAC+AGG | + | chr3_3:48710072-48710091 | None:intergenic | 50.0% |
| ! | GGGTTTTACCCTACCCATTG+CGG | - | chr3_3:48710459-48710478 | Msa0455680:intron | 50.0% |
| ! | GGTTTTACCCTACCCATTGC+GGG | - | chr3_3:48710460-48710479 | Msa0455680:intron | 50.0% |
| CCCGCAAAAAATACCCGCAA+TGG | + | chr3_3:48710476-48710495 | None:intergenic | 50.0% | |
| !!! | ATTTTTTGCGGGTGCCCATC+GGG | - | chr3_3:48710484-48710503 | Msa0455680:intron | 50.0% |
| !! | TCTCCTCTACTTTTGCGGCT+AGG | + | chr3_3:48710545-48710564 | None:intergenic | 50.0% |
| TAGCCGCAAAAGTAGAGGAG+AGG | - | chr3_3:48710544-48710563 | Msa0455680:intron | 50.0% | |
| ! | TTGATGATACACGTACCCGC+GGG | + | chr3_3:48710779-48710798 | None:intergenic | 50.0% |
| GTCCGTGTCCATATACGAAC+GGG | - | chr3_3:48710805-48710824 | Msa0455680:intron | 50.0% | |
| TAAAATCCGTCATGGGGACG+GGG | + | chr3_3:48710880-48710899 | None:intergenic | 50.0% | |
| CGCGGATAAAATCCGTCATG+GGG | + | chr3_3:48710886-48710905 | None:intergenic | 50.0% | |
| CCGCGGATAAAATCCGTCAT+GGG | + | chr3_3:48710887-48710906 | None:intergenic | 50.0% | |
| !!! | CCCATGACGGATTTTATCCG+CGG | - | chr3_3:48710884-48710903 | Msa0455680:intron | 50.0% |
| TCCGCGGATAAAATCCGTCA+TGG | + | chr3_3:48710888-48710907 | None:intergenic | 50.0% | |
| ! | ATTTTATCCGCGGATACCCG+CGG | - | chr3_3:48710894-48710913 | Msa0455680:intron | 50.0% |
| GGCACCTCCATCTTACAAGT+CGG | + | chr3_3:48711636-48711655 | None:intergenic | 50.0% | |
| ! | CCAAGGAGTGTGCTAATGAG+TGG | + | chr3_3:48712104-48712123 | None:intergenic | 50.0% |
| CCACTCATTAGCACACTCCT+TGG | - | chr3_3:48712101-48712120 | Msa0455680:intron | 50.0% | |
| AAGATTGATCGCCGAAGAGC+CGG | - | chr3_3:48712250-48712269 | Msa0455680:intron | 50.0% | |
| TGCTGCCCTCTTTGCAAACA+AGG | - | chr3_3:48712961-48712980 | Msa0455680:five_prime_UTR | 50.0% | |
| AGCTGTAGGAGAGGCTTGTG+GGG | + | chr3_3:48708600-48708619 | None:intergenic | 55.0% | |
| CAGCTGTAGGAGAGGCTTGT+GGG | + | chr3_3:48708601-48708620 | None:intergenic | 55.0% | |
| TCAGCTGTAGGAGAGGCTTG+TGG | + | chr3_3:48708602-48708621 | None:intergenic | 55.0% | |
| AGCCTCTCCTACAGCTGAAG+TGG | - | chr3_3:48708604-48708623 | Msa0455680:CDS | 55.0% | |
| GCCTCTCCTACAGCTGAAGT+GGG | - | chr3_3:48708605-48708624 | Msa0455680:CDS | 55.0% | |
| GGCCTAGGTGCCCTTAGATA+AGG | - | chr3_3:48708626-48708645 | Msa0455680:CDS | 55.0% | |
| GGCCCGGTCAATATGGTACA+TGG | - | chr3_3:48708920-48708939 | Msa0455680:intron | 55.0% | |
| TCAATGGCTATCCGCGGGTA+CGG | - | chr3_3:48709385-48709404 | Msa0455680:intron | 55.0% | |
| TTTATCCAATGGGGCGGGGA+CGG | + | chr3_3:48709423-48709442 | None:intergenic | 55.0% | |
| GAGATACCCGCACGGATATG+GGG | + | chr3_3:48709464-48709483 | None:intergenic | 55.0% | |
| CCCGTATAGAGATACCCGCA+CGG | + | chr3_3:48709472-48709491 | None:intergenic | 55.0% | |
| CCGTGCGGGTATCTCTATAC+GGG | - | chr3_3:48709469-48709488 | Msa0455680:intron | 55.0% | |
| GGATGGCAATGGGTACCCAA+TGG | - | chr3_3:48709920-48709939 | Msa0455680:intron | 55.0% | |
| GCAATGGGTACCCAATGGGT+AGG | - | chr3_3:48709925-48709944 | Msa0455680:intron | 55.0% | |
| ACAAACGCGGGTATGGGGAA+GGG | + | chr3_3:48709962-48709981 | None:intergenic | 55.0% | |
| TACAAACGCGGGTATGGGGA+AGG | + | chr3_3:48709963-48709982 | None:intergenic | 55.0% | |
| ! | GTTGTTACCCACGAGGGTAC+GGG | + | chr3_3:48710005-48710024 | None:intergenic | 55.0% |
| CACTGCAGTTGTTACCCACG+AGG | + | chr3_3:48710012-48710031 | None:intergenic | 55.0% | |
| TTAGGTGCCCATAGGGTAGG+GGG | + | chr3_3:48710040-48710059 | None:intergenic | 55.0% | |
| CTTAGGTGCCCATAGGGTAG+GGG | + | chr3_3:48710041-48710060 | None:intergenic | 55.0% | |
| CACTTAGGTGCCCATAGGGT+AGG | + | chr3_3:48710043-48710062 | None:intergenic | 55.0% | |
| TGGGCACTTAGGTGCCCATA+GGG | + | chr3_3:48710047-48710066 | None:intergenic | 55.0% | |
| ATGGGCACTTAGGTGCCCAT+AGG | + | chr3_3:48710048-48710067 | None:intergenic | 55.0% | |
| GGGTACAGGTATGGGCACTT+AGG | + | chr3_3:48710058-48710077 | None:intergenic | 55.0% | |
| !! | GCGGGTAATGGGTACAGGTA+TGG | + | chr3_3:48710067-48710086 | None:intergenic | 55.0% |
| ATGGGTATGGGTGCGGGTAA+GGG | + | chr3_3:48710390-48710409 | None:intergenic | 55.0% | |
| TATGGGTATGGGCTTGGGTG+CGG | + | chr3_3:48710433-48710452 | None:intergenic | 55.0% | |
| ! | TTAACGGGTACGGATACCCG+CGG | - | chr3_3:48710760-48710779 | Msa0455680:intron | 55.0% |
| GTAGCTAAACGGGTATCCGC+GGG | + | chr3_3:48710854-48710873 | None:intergenic | 55.0% | |
| GGTAGCTAAACGGGTATCCG+CGG | + | chr3_3:48710855-48710874 | None:intergenic | 55.0% | |
| ! | TTTTATCCGCGGATACCCGC+GGG | - | chr3_3:48710895-48710914 | Msa0455680:intron | 55.0% |
| GCCCACTTCAGCTGTAGGAG+AGG | + | chr3_3:48708609-48708628 | None:intergenic | 60.0% | |
| CCTAGGCCCACTTCAGCTGT+AGG | + | chr3_3:48708614-48708633 | None:intergenic | 60.0% | |
| CCTACAGCTGAAGTGGGCCT+AGG | - | chr3_3:48708611-48708630 | Msa0455680:CDS | 60.0% | |
| CAATGGCTATCCGCGGGTAC+GGG | - | chr3_3:48709386-48709405 | Msa0455680:intron | 60.0% | |
| ACGGATATGGGGACGGGTAC+GGG | + | chr3_3:48709453-48709472 | None:intergenic | 60.0% | |
| CACGGATATGGGGACGGGTA+CGG | + | chr3_3:48709454-48709473 | None:intergenic | 60.0% | |
| TACCCGTCCCCATATCCGTG+CGG | - | chr3_3:48709454-48709473 | Msa0455680:intron | 60.0% | |
| TACCCGCACGGATATGGGGA+CGG | + | chr3_3:48709460-48709479 | None:intergenic | 60.0% | |
| TGCCCTTCCCCCTACCCTAT+GGG | - | chr3_3:48710030-48710049 | Msa0455680:intron | 60.0% | |
| TGCCCATAGGGTAGGGGGAA+GGG | + | chr3_3:48710035-48710054 | None:intergenic | 60.0% | |
| ! | TATATGCGGGTTGCGGGGCT+GGG | - | chr3_3:48710354-48710373 | Msa0455680:intron | 60.0% |
| GATGGGTATGGGTGCGGGTA+AGG | + | chr3_3:48710391-48710410 | None:intergenic | 60.0% | |
| ATGGGTATGGGCTTGGGTGC+GGG | + | chr3_3:48710432-48710451 | None:intergenic | 60.0% | |
| CAATTGGCCCCATGCCCGAT+GGG | + | chr3_3:48710501-48710520 | None:intergenic | 60.0% | |
| ! | TAACGGGTACGGATACCCGC+GGG | - | chr3_3:48710761-48710780 | Msa0455680:intron | 60.0% |
| GATATCCGTCCCCGCCCCAT+TGG | - | chr3_3:48709415-48709434 | Msa0455680:intron | 65.0% | |
| ACCCGTCCCCATATCCGTGC+GGG | - | chr3_3:48709455-48709474 | Msa0455680:intron | 65.0% | |
| ACCCGCACGGATATGGGGAC+GGG | + | chr3_3:48709459-48709478 | None:intergenic | 65.0% | |
| GGGAACGCGCGGATATCCGT+GGG | + | chr3_3:48709516-48709535 | None:intergenic | 65.0% | |
| TGGGAACGCGCGGATATCCG+TGG | + | chr3_3:48709517-48709536 | None:intergenic | 65.0% | |
| CGGATATCCGCGCGTTCCCA+TGG | - | chr3_3:48709517-48709536 | Msa0455680:intron | 65.0% | |
| ! | TACCCACGAGGGTACGGGCT+CGG | + | chr3_3:48710000-48710019 | None:intergenic | 65.0% |
| GTGCCCTTCCCCCTACCCTA+TGG | - | chr3_3:48710029-48710048 | Msa0455680:intron | 65.0% | |
| GTGCCCATAGGGTAGGGGGA+AGG | + | chr3_3:48710036-48710055 | None:intergenic | 65.0% | |
| ! | GTATATGCGGGTTGCGGGGC+TGG | - | chr3_3:48710353-48710372 | Msa0455680:intron | 65.0% |
| GCAATTGGCCCCATGCCCGA+TGG | + | chr3_3:48710502-48710521 | None:intergenic | 65.0% | |
| GACGGGGCGGGTAGCTAAAC+GGG | + | chr3_3:48710864-48710883 | None:intergenic | 65.0% | |
| GGACGGGGCGGGTAGCTAAA+CGG | + | chr3_3:48710865-48710884 | None:intergenic | 65.0% | |
| AATCCGTCATGGGGACGGGG+CGG | + | chr3_3:48710877-48710896 | None:intergenic | 65.0% | |
| TTCGTACCCGCGGGTATCCG+CGG | + | chr3_3:48710904-48710923 | None:intergenic | 65.0% | |
| ! | CGAGGGTACGGGCTCGGGTA+CGG | + | chr3_3:48709994-48710013 | None:intergenic | 70.0% |
| TACCCGAGCCCGTACCCTCG+TGG | - | chr3_3:48709994-48710013 | Msa0455680:intron | 70.0% | |
| ACCCGAGCCCGTACCCTCGT+GGG | - | chr3_3:48709995-48710014 | Msa0455680:intron | 70.0% | |
| ! | ACCCACGAGGGTACGGGCTC+GGG | + | chr3_3:48709999-48710018 | None:intergenic | 70.0% |
| TTGCGGGTGCCCATCGGGCA+TGG | - | chr3_3:48710489-48710508 | Msa0455680:intron | 70.0% | |
| TGCGGGTGCCCATCGGGCAT+GGG | - | chr3_3:48710490-48710509 | Msa0455680:intron | 70.0% | |
| TACCCGCCCCGTCCCCATGA+CGG | - | chr3_3:48710871-48710890 | Msa0455680:intron | 70.0% | |
| ATCCGTCATGGGGACGGGGC+GGG | + | chr3_3:48710876-48710895 | None:intergenic | 70.0% | |
| GCGGGTGCCCATCGGGCATG+GGG | - | chr3_3:48710491-48710510 | Msa0455680:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 48707319 | 48713393 | 48707319 | ID=Msa0455680;Name=Msa0455680 |
| chr3_3 | mRNA | 48707319 | 48713393 | 48707319 | ID=Msa0455680-mRNA-1;Parent=Msa0455680;Name=Msa0455680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=367|1|1|1|0.5|0.2|5|335|333 |
| chr3_3 | exon | 48707319 | 48707474 | 48707319 | ID=Msa0455680-mRNA-1:exon:9170;Parent=Msa0455680-mRNA-1 |
| chr3_3 | exon | 48707537 | 48707862 | 48707537 | ID=Msa0455680-mRNA-1:exon:9169;Parent=Msa0455680-mRNA-1 |
| chr3_3 | exon | 48708441 | 48708831 | 48708441 | ID=Msa0455680-mRNA-1:exon:9168;Parent=Msa0455680-mRNA-1 |
| chr3_3 | exon | 48712438 | 48713050 | 48712438 | ID=Msa0455680-mRNA-1:exon:9167;Parent=Msa0455680-mRNA-1 |
| chr3_3 | exon | 48713176 | 48713393 | 48713176 | ID=Msa0455680-mRNA-1:exon:9166;Parent=Msa0455680-mRNA-1 |
| chr3_3 | five_prime_UTR | 48713176 | 48713393 | 48713176 | ID=Msa0455680-mRNA-1:five_prime_utr;Parent=Msa0455680-mRNA-1 |
| chr3_3 | five_prime_UTR | 48712902 | 48713050 | 48712902 | ID=Msa0455680-mRNA-1:five_prime_utr;Parent=Msa0455680-mRNA-1 |
| chr3_3 | CDS | 48712438 | 48712901 | 48712438 | ID=Msa0455680-mRNA-1:cds;Parent=Msa0455680-mRNA-1 |
| chr3_3 | CDS | 48708441 | 48708831 | 48708441 | ID=Msa0455680-mRNA-1:cds;Parent=Msa0455680-mRNA-1 |
| chr3_3 | CDS | 48707716 | 48707862 | 48707716 | ID=Msa0455680-mRNA-1:cds;Parent=Msa0455680-mRNA-1 |
| chr3_3 | three_prime_UTR | 48707537 | 48707715 | 48707537 | ID=Msa0455680-mRNA-1:three_prime_utr;Parent=Msa0455680-mRNA-1 |
| chr3_3 | three_prime_UTR | 48707319 | 48707474 | 48707319 | ID=Msa0455680-mRNA-1:three_prime_utr;Parent=Msa0455680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
