Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529000 | QCE07629.1 | 84.286 | 70 | 11 | 0 | 1 | 70 | 1 | 70 | 1.99e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529000 | sp|P82381|ICI_LINUS | 55.882 | 68 | 30 | 0 | 2 | 69 | 1 | 68 | 7.34e-21 | 80.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529000 | A0A4D6N565 | 84.286 | 70 | 11 | 0 | 1 | 70 | 1 | 70 | 9.51e-34 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0529000 | 0.850477 | 1.656108e-60 | -8.615850e-47 |
| Msa0004480 | Msa0529000 | 0.819652 | 1.037859e-52 | -8.615850e-47 |
| Msa0033840 | Msa0529000 | -0.801930 | 7.135618e-49 | -8.615850e-47 |
| Msa0043850 | Msa0529000 | 0.843351 | 1.478343e-58 | -8.615850e-47 |
| Msa0051960 | Msa0529000 | 0.804219 | 2.399855e-49 | -8.615850e-47 |
| Msa0052780 | Msa0529000 | 0.854922 | 8.913145e-62 | -8.615850e-47 |
| Msa0061220 | Msa0529000 | 0.848082 | 7.686240e-60 | -8.615850e-47 |
| Msa0067590 | Msa0529000 | -0.839975 | 1.148845e-57 | -8.615850e-47 |
| Msa0072600 | Msa0529000 | -0.800099 | 1.689050e-48 | -8.615850e-47 |
| Msa0077370 | Msa0529000 | 0.989953 | 2.176827e-180 | -8.615850e-47 |
| Msa0077380 | Msa0529000 | 0.848846 | 4.724112e-60 | -8.615850e-47 |
| Msa0082230 | Msa0529000 | 0.868918 | 4.568792e-66 | -8.615850e-47 |
| Msa0082420 | Msa0529000 | 0.882988 | 6.559535e-71 | -8.615850e-47 |
| Msa0086190 | Msa0529000 | 0.848953 | 4.412423e-60 | -8.615850e-47 |
| Msa0090510 | Msa0529000 | 0.842352 | 2.725808e-58 | -8.615850e-47 |
| Msa0097570 | Msa0529000 | 0.865357 | 6.260711e-65 | -8.615850e-47 |
| Msa0100750 | Msa0529000 | 0.822566 | 2.212231e-53 | -8.615850e-47 |
| Msa0101960 | Msa0529000 | 0.813799 | 2.131299e-51 | -8.615850e-47 |
| Msa0108760 | Msa0529000 | 0.806339 | 8.632728e-50 | -8.615850e-47 |
| Msa0112880 | Msa0529000 | -0.800712 | 1.267233e-48 | -8.615850e-47 |
| Msa0113370 | Msa0529000 | -0.822332 | 2.507285e-53 | -8.615850e-47 |
| Msa0117520 | Msa0529000 | 0.804337 | 2.266974e-49 | -8.615850e-47 |
| Msa0125320 | Msa0529000 | 0.833317 | 5.718083e-56 | -8.615850e-47 |
| Msa0137980 | Msa0529000 | 0.837495 | 5.025655e-57 | -8.615850e-47 |
| Msa0138900 | Msa0529000 | 0.818607 | 1.794587e-52 | -8.615850e-47 |
| Msa0145430 | Msa0529000 | 0.822884 | 1.865740e-53 | -8.615850e-47 |
| Msa0174100 | Msa0529000 | 0.828175 | 1.040459e-54 | -8.615850e-47 |
| Msa0174820 | Msa0529000 | 0.827344 | 1.647902e-54 | -8.615850e-47 |
| Msa0183910 | Msa0529000 | 0.832342 | 9.983609e-56 | -8.615850e-47 |
| Msa0213540 | Msa0529000 | 0.816084 | 6.635756e-52 | -8.615850e-47 |
| Msa0366780 | Msa0529000 | 0.801072 | 1.069659e-48 | -8.615850e-47 |
| Msa0367540 | Msa0529000 | -0.834230 | 3.379181e-56 | -8.615850e-47 |
| Msa0370580 | Msa0529000 | -0.844592 | 6.872679e-59 | -8.615850e-47 |
| Msa0383870 | Msa0529000 | -0.811017 | 8.641351e-51 | -8.615850e-47 |
| Msa0388730 | Msa0529000 | 0.807852 | 4.128549e-50 | -8.615850e-47 |
| Msa0403470 | Msa0529000 | -0.807866 | 4.100486e-50 | -8.615850e-47 |
| Msa0427310 | Msa0529000 | 0.836407 | 9.527268e-57 | -8.615850e-47 |
| Msa0431900 | Msa0529000 | 0.825266 | 5.149001e-54 | -8.615850e-47 |
| Msa0455680 | Msa0529000 | 0.816188 | 6.289295e-52 | -8.615850e-47 |
| Msa0473810 | Msa0529000 | 0.807785 | 4.266207e-50 | -8.615850e-47 |
| Msa0241480 | Msa0529000 | 0.813785 | 2.146378e-51 | -8.615850e-47 |
| Msa0276430 | Msa0529000 | 0.815570 | 8.638116e-52 | -8.615850e-47 |
| Msa0302730 | Msa0529000 | 0.803304 | 3.716741e-49 | -8.615850e-47 |
| Msa0304730 | Msa0529000 | 0.829865 | 4.052907e-55 | -8.615850e-47 |
| Msa0310720 | Msa0529000 | -0.811390 | 7.170636e-51 | -8.615850e-47 |
| Msa0310730 | Msa0529000 | -0.823669 | 1.223134e-53 | -8.615850e-47 |
| Msa0316470 | Msa0529000 | 0.815987 | 6.974806e-52 | -8.615850e-47 |
| Msa0319020 | Msa0529000 | 0.812673 | 3.767337e-51 | -8.615850e-47 |
| Msa0320230 | Msa0529000 | 0.801661 | 8.106015e-49 | -8.615850e-47 |
| Msa0331020 | Msa0529000 | 0.831952 | 1.246649e-55 | -8.615850e-47 |
| Msa0341480 | Msa0529000 | 0.812315 | 4.511066e-51 | -8.615850e-47 |
| Msa0490320 | Msa0529000 | 0.806102 | 9.682683e-50 | -8.615850e-47 |
| Msa0517990 | Msa0529000 | 0.838692 | 2.473371e-57 | -8.615850e-47 |
| Msa0520770 | Msa0529000 | 0.818796 | 1.625724e-52 | -8.615850e-47 |
| Msa0528990 | Msa0529000 | 0.897262 | 1.668040e-76 | -8.615850e-47 |
| Msa0529000 | Msa0530730 | 0.854681 | 1.046896e-61 | -8.615850e-47 |
| Msa0529000 | Msa0534610 | 0.813179 | 2.918518e-51 | -8.615850e-47 |
| Msa0529000 | Msa0536350 | 0.806943 | 6.434938e-50 | -8.615850e-47 |
| Msa0529000 | Msa0545050 | 0.835444 | 1.671878e-56 | -8.615850e-47 |
| Msa0529000 | Msa0561360 | 0.827236 | 1.749316e-54 | -8.615850e-47 |
| Msa0529000 | Msa0567370 | 0.831984 | 1.223952e-55 | -8.615850e-47 |
| Msa0529000 | Msa0570700 | 0.847622 | 1.029088e-59 | -8.615850e-47 |
| Msa0529000 | Msa0574930 | 0.898128 | 7.186726e-77 | -8.615850e-47 |
| Msa0529000 | Msa0578410 | 0.823839 | 1.116151e-53 | -8.615850e-47 |
| Msa0529000 | Msa0584580 | 0.806603 | 7.591357e-50 | -8.615850e-47 |
| Msa0529000 | Msa0584600 | 0.809116 | 2.218178e-50 | -8.615850e-47 |
| Msa0529000 | Msa0587120 | 0.813406 | 2.601148e-51 | -8.615850e-47 |
| Msa0529000 | Msa0588590 | 0.827222 | 1.762211e-54 | -8.615850e-47 |
| Msa0529000 | Msa0588620 | 0.800660 | 1.298520e-48 | -8.615850e-47 |
| Msa0529000 | Msa0590810 | 0.809580 | 1.763561e-50 | -8.615850e-47 |
| Msa0529000 | Msa0592330 | 0.823725 | 1.186571e-53 | -8.615850e-47 |
| Msa0529000 | Msa0600590 | 0.850070 | 2.153356e-60 | -8.615850e-47 |
| Msa0529000 | Msa0606080 | 0.801570 | 8.461647e-49 | -8.615850e-47 |
| Msa0529000 | Msa0609420 | 0.809372 | 1.954818e-50 | -8.615850e-47 |
| Msa0529000 | Msa0610830 | 0.835666 | 1.468925e-56 | -8.615850e-47 |
| Msa0529000 | Msa0611060 | 0.838257 | 3.201015e-57 | -8.615850e-47 |
| Msa0529000 | Msa0613420 | 0.806179 | 9.327124e-50 | -8.615850e-47 |
| Msa0529000 | Msa0626920 | 0.812370 | 4.387267e-51 | -8.615850e-47 |
| Msa0529000 | Msa0631130 | 0.801680 | 8.030905e-49 | -8.615850e-47 |
| Msa0529000 | Msa0632420 | 0.810801 | 9.623428e-51 | -8.615850e-47 |
| Msa0529000 | Msa0637930 | -0.819086 | 1.396975e-52 | -8.615850e-47 |
| Msa0529000 | Msa0641130 | 0.842705 | 2.196958e-58 | -8.615850e-47 |
| Msa0529000 | Msa0654900 | 0.840044 | 1.101719e-57 | -8.615850e-47 |
| Msa0529000 | Msa0657930 | -0.800549 | 1.368270e-48 | -8.615850e-47 |
| Msa0529000 | Msa0671170 | 0.804713 | 1.892800e-49 | -8.615850e-47 |
| Msa0529000 | Msa0671210 | 0.810082 | 1.375421e-50 | -8.615850e-47 |
| Msa0529000 | Msa0679670 | 0.812044 | 5.166833e-51 | -8.615850e-47 |
| Msa0529000 | Msa0693520 | 0.808131 | 3.600156e-50 | -8.615850e-47 |
| Msa0529000 | Msa0693750 | 0.812987 | 3.214094e-51 | -8.615850e-47 |
| Msa0529000 | Msa0694140 | 0.828480 | 8.783627e-55 | -8.615850e-47 |
| Msa0529000 | Msa0697680 | 0.803837 | 2.880364e-49 | -8.615850e-47 |
| Msa0529000 | Msa0698450 | 0.852837 | 3.551174e-61 | -8.615850e-47 |
| Msa0529000 | Msa0698460 | 0.856537 | 3.008954e-62 | -8.615850e-47 |
| Msa0529000 | Msa0703810 | 0.827355 | 1.637726e-54 | -8.615850e-47 |
| Msa0529000 | Msa0708600 | 0.852714 | 3.851829e-61 | -8.615850e-47 |
| Msa0529000 | Msa0713060 | 0.826531 | 2.577634e-54 | -8.615850e-47 |
| Msa0529000 | Msa0744640 | 0.881902 | 1.631489e-70 | -8.615850e-47 |
| Msa0529000 | Msa0754890 | 0.807705 | 4.436278e-50 | -8.615850e-47 |
| Msa0529000 | Msa0772280 | 0.806315 | 8.730399e-50 | -8.615850e-47 |
| Msa0529000 | Msa0779230 | 0.804214 | 2.405535e-49 | -8.615850e-47 |
| Msa0529000 | Msa0787790 | 0.802389 | 5.741435e-49 | -8.615850e-47 |
| Msa0529000 | Msa0810440 | 0.807088 | 5.997101e-50 | -8.615850e-47 |
| Msa0529000 | Msa0816630 | 0.807952 | 3.931625e-50 | -8.615850e-47 |
| Msa0529000 | Msa0823540 | 0.800720 | 1.262274e-48 | -8.615850e-47 |
| Msa0529000 | Msa0841730 | 0.882272 | 1.197009e-70 | -8.615850e-47 |
| Msa0529000 | Msa0863990 | 0.834516 | 2.865419e-56 | -8.615850e-47 |
| Msa0529000 | Msa0870510 | 0.820646 | 6.144351e-53 | -8.615850e-47 |
| Msa0529000 | Msa0875080 | 0.818317 | 2.087522e-52 | -8.615850e-47 |
| Msa0529000 | Msa0881530 | -0.839030 | 2.021804e-57 | -8.615850e-47 |
| Msa0529000 | Msa0907430 | 0.810792 | 9.662813e-51 | -8.615850e-47 |
| Msa0529000 | Msa0930740 | 0.861674 | 8.690857e-64 | -8.615850e-47 |
| Msa0529000 | Msa0940340 | 0.832099 | 1.146568e-55 | -8.615850e-47 |
| Msa0529000 | Msa0946110 | 0.817393 | 3.374741e-52 | -8.615850e-47 |
| Msa0529000 | Msa0969380 | 0.812190 | 4.803404e-51 | -8.615850e-47 |
| Msa0529000 | Msa0969590 | 0.803060 | 4.174160e-49 | -8.615850e-47 |
| Msa0529000 | Msa0969720 | 0.815976 | 7.012941e-52 | -8.615850e-47 |
| Msa0529000 | Msa0982090 | -0.853790 | 1.893627e-61 | -8.615850e-47 |
| Msa0529000 | Msa0984290 | 0.810087 | 1.372404e-50 | -8.615850e-47 |
| Msa0529000 | Msa1008390 | 0.800285 | 1.548565e-48 | -8.615850e-47 |
| Msa0529000 | Msa1011250 | 0.803350 | 3.635621e-49 | -8.615850e-47 |
| Msa0529000 | Msa1016960 | 0.863098 | 3.171964e-64 | -8.615850e-47 |
| Msa0529000 | Msa1022030 | 0.824993 | 5.970930e-54 | -8.615850e-47 |
| Msa0529000 | Msa1031460 | 0.852189 | 5.433633e-61 | -8.615850e-47 |
| Msa0529000 | Msa1044510 | 0.836428 | 9.410594e-57 | -8.615850e-47 |
| Msa0529000 | Msa1058200 | 0.858753 | 6.632445e-63 | -8.615850e-47 |
| Msa0529000 | Msa1062040 | 0.842807 | 2.063178e-58 | -8.615850e-47 |
| Msa0529000 | Msa1062080 | 0.809374 | 1.953192e-50 | -8.615850e-47 |
| Msa0529000 | Msa1063360 | 0.812755 | 3.613374e-51 | -8.615850e-47 |
| Msa0529000 | Msa1068380 | 0.808444 | 3.087242e-50 | -8.615850e-47 |
| Msa0529000 | Msa1069340 | 0.814607 | 1.413560e-51 | -8.615850e-47 |
| Msa0529000 | Msa1070540 | 0.870033 | 1.980745e-66 | -8.615850e-47 |
| Msa0529000 | Msa1082360 | 0.859020 | 5.518590e-63 | -8.615850e-47 |
| Msa0529000 | Msa1101240 | 0.870554 | 1.337080e-66 | -8.615850e-47 |
| Msa0529000 | Msa1107200 | 0.825619 | 4.246767e-54 | -8.615850e-47 |
| Msa0529000 | Msa1109810 | 0.846546 | 2.030048e-59 | -8.615850e-47 |
| Msa0529000 | Msa1113100 | 0.836046 | 1.177117e-56 | -8.615850e-47 |
| Msa0529000 | Msa1127260 | 0.800604 | 1.332970e-48 | -8.615850e-47 |
| Msa0529000 | Msa1128270 | 0.802442 | 5.599696e-49 | -8.615850e-47 |
| Msa0529000 | Msa1131430 | 0.836926 | 7.025039e-57 | -8.615850e-47 |
| Msa0529000 | Msa1140630 | 0.807557 | 4.769601e-50 | -8.615850e-47 |
| Msa0529000 | Msa1150780 | 0.835763 | 1.388661e-56 | -8.615850e-47 |
| Msa0529000 | Msa1168640 | 0.825279 | 5.111473e-54 | -8.615850e-47 |
| Msa0529000 | Msa1173150 | 0.862283 | 5.654122e-64 | -8.615850e-47 |
| Msa0529000 | Msa1183140 | 0.829751 | 4.320478e-55 | -8.615850e-47 |
| Msa0529000 | Msa1188350 | 0.822668 | 2.093931e-53 | -8.615850e-47 |
| Msa0529000 | Msa1206270 | 0.814717 | 1.336526e-51 | -8.615850e-47 |
| Msa0529000 | Msa1208990 | 0.806803 | 6.887566e-50 | -8.615850e-47 |
| Msa0529000 | Msa1212470 | 0.810285 | 1.243914e-50 | -8.615850e-47 |
| Msa0529000 | Msa1217260 | 0.817577 | 3.068811e-52 | -8.615850e-47 |
| Msa0529000 | Msa1218160 | 0.830595 | 2.688382e-55 | -8.615850e-47 |
| Msa0529000 | Msa1221220 | 0.801968 | 7.010670e-49 | -8.615850e-47 |
| Msa0529000 | Msa1229480 | 0.820785 | 5.707648e-53 | -8.615850e-47 |
| Msa0529000 | Msa1238680 | 0.819761 | 9.798726e-53 | -8.615850e-47 |
| Msa0529000 | Msa1252000 | 0.823781 | 1.151630e-53 | -8.615850e-47 |
| Msa0529000 | Msa1252810 | 0.830722 | 2.503017e-55 | -8.615850e-47 |
| Msa0529000 | Msa1256810 | 0.812184 | 4.816662e-51 | -8.615850e-47 |
| Msa0529000 | Msa1262540 | 0.805081 | 1.585444e-49 | -8.615850e-47 |
| Msa0529000 | Msa1269060 | 0.801992 | 6.929355e-49 | -8.615850e-47 |
| Msa0529000 | Msa1272010 | 0.817287 | 3.565685e-52 | -8.615850e-47 |
| Msa0529000 | Msa1307160 | 0.814190 | 1.747779e-51 | -8.615850e-47 |
| Msa0529000 | Msa1309760 | 0.825065 | 5.743684e-54 | -8.615850e-47 |
| Msa0529000 | Msa1329900 | 0.805376 | 1.375406e-49 | -8.615850e-47 |
| Msa0529000 | Msa1368610 | 0.824336 | 8.529974e-54 | -8.615850e-47 |
| Msa0529000 | Msa1370420 | 0.845411 | 4.129711e-59 | -8.615850e-47 |
| Msa0529000 | Msa1370810 | 0.855797 | 4.956827e-62 | -8.615850e-47 |
| Msa0529000 | Msa1382380 | -0.855711 | 5.253307e-62 | -8.615850e-47 |
| Msa0529000 | Msa1389640 | 0.858660 | 7.075001e-63 | -8.615850e-47 |
| Msa0529000 | Msa1402350 | 0.841732 | 3.975958e-58 | -8.615850e-47 |
| Msa0529000 | Msa1405420 | 0.834368 | 3.120598e-56 | -8.615850e-47 |
| Msa0529000 | Msa1407760 | 0.847865 | 8.822193e-60 | -8.615850e-47 |
| Msa0529000 | Msa1407880 | 0.803327 | 3.675727e-49 | -8.615850e-47 |
| Msa0529000 | Msa1419840 | 0.801729 | 7.848317e-49 | -8.615850e-47 |
| Msa0529000 | Msa1422340 | 0.820317 | 7.311358e-53 | -8.615850e-47 |
| Msa0529000 | Msa1437730 | 0.805830 | 1.104729e-49 | -8.615850e-47 |
| Msa0529000 | Msa1443620 | 0.815294 | 9.953377e-52 | -8.615850e-47 |
| Msa0529000 | Msa1457780 | -0.801992 | 6.929158e-49 | -8.615850e-47 |
| Msa0529000 | Msa1459190 | 0.839900 | 1.201199e-57 | -8.615850e-47 |
| Msa0529000 | Msa1465860 | 0.852677 | 3.946535e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529000 | MtrunA17_Chr1g0187161 | 84.286 | 70 | 11 | 0 | 1 | 70 | 1 | 70 | 4.87e-37 | 118 |
| Msa0529000 | MtrunA17_Chr1g0187201 | 88.235 | 68 | 8 | 0 | 3 | 70 | 4 | 71 | 8.29e-37 | 117 |
| Msa0529000 | MtrunA17_Chr1g0187221 | 81.429 | 70 | 13 | 0 | 1 | 70 | 3 | 72 | 1.67e-35 | 114 |
| Msa0529000 | MtrunA17_Chr5g0442291 | 82.857 | 70 | 12 | 0 | 1 | 70 | 1 | 70 | 3.98e-35 | 113 |
| Msa0529000 | MtrunA17_Chr1g0184411 | 54.286 | 70 | 32 | 0 | 1 | 70 | 1 | 70 | 1.24e-20 | 77.0 |
| Msa0529000 | MtrunA17_Chr1g0184401 | 53.030 | 66 | 31 | 0 | 5 | 70 | 8 | 73 | 6.82e-18 | 70.1 |
| Msa0529000 | MtrunA17_Chr5g0419531 | 53.030 | 66 | 31 | 0 | 5 | 70 | 4 | 69 | 1.72e-17 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529000 | AT2G38870.1 | 52.857 | 70 | 33 | 0 | 1 | 70 | 1 | 70 | 1.55e-20 | 77.0 |
| Msa0529000 | AT5G43580.1 | 48.611 | 72 | 35 | 1 | 1 | 70 | 28 | 99 | 8.35e-18 | 70.9 |
| Msa0529000 | AT3G46860.1 | 42.857 | 70 | 37 | 1 | 4 | 70 | 16 | 85 | 6.68e-13 | 58.2 |
| Msa0529000 | AT2G38900.2 | 45.312 | 64 | 35 | 0 | 7 | 70 | 25 | 88 | 1.56e-12 | 57.4 |
| Msa0529000 | AT2G38900.1 | 45.312 | 64 | 35 | 0 | 7 | 70 | 10 | 73 | 1.94e-12 | 56.6 |
| Msa0529000 | AT5G43570.1 | 46.575 | 73 | 33 | 1 | 1 | 67 | 1 | 73 | 1.43e-11 | 55.1 |
Find 33 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCAATTCTTCTTGTGTT+TGG | 0.271522 | 4_1:+2003654 | None:intergenic |
| CAACGACAGGGTTTGGGTTT+GGG | 0.289389 | 4_1:-2003314 | Msa0529000:CDS |
| GCAACGACAGGGTTTGGGTT+TGG | 0.327218 | 4_1:-2003315 | Msa0529000:CDS |
| GACACTTTCTATCCAATTGT+TGG | 0.347121 | 4_1:+2003262 | None:intergenic |
| ATAAATTTAATGTTTCAATA+AGG | 0.348781 | 4_1:-2003207 | Msa0529000:three_prime_UTR |
| ACTTACGCAACGACAGGGTT+TGG | 0.351229 | 4_1:-2003321 | Msa0529000:CDS |
| CTTACGCAACGACAGGGTTT+GGG | 0.360903 | 4_1:-2003320 | Msa0529000:CDS |
| GTCACTCAGGTTCCAACAAT+TGG | 0.363160 | 4_1:-2003274 | Msa0529000:CDS |
| TATAATAAGTAGTATACAAT+TGG | 0.368616 | 4_1:+2003171 | None:intergenic |
| TGGGTTTGGGTTAATAAAGA+TGG | 0.418377 | 4_1:-2003301 | Msa0529000:CDS |
| TACATATTGAAGGATCAAAA+AGG | 0.425186 | 4_1:-2003602 | Msa0529000:five_prime_UTR |
| CCTTCCACTCCAACCAACTC+TGG | 0.454716 | 4_1:+2003427 | None:intergenic |
| AATGCCATCATTGTGCTAGA+AGG | 0.471882 | 4_1:-2003361 | Msa0529000:CDS |
| GAAACATTAAATTTATGACT+TGG | 0.485653 | 4_1:+2003214 | None:intergenic |
| AAAATAGTCATACATATTGA+AGG | 0.494025 | 4_1:-2003612 | Msa0529000:five_prime_UTR |
| CCAGAGTTGGTTGGAGTGGA+AGG | 0.515293 | 4_1:-2003427 | Msa0529000:CDS |
| TGTTCTCAGCTAAGAGCTCA+TGG | 0.516002 | 4_1:-2003450 | Msa0529000:intron |
| CCGACGACTTACGCAACGAC+AGG | 0.517888 | 4_1:-2003327 | Msa0529000:CDS |
| GTTGGTTGGAGTGGAAGGAA+AGG | 0.527079 | 4_1:-2003422 | Msa0529000:CDS |
| CAGTGTCATATATAATTCCT+TGG | 0.530851 | 4_1:+2003080 | None:intergenic |
| AGATCCTTCTAGCACAATGA+TGG | 0.537596 | 4_1:+2003357 | None:intergenic |
| ATGGCCAGAGTTGGTTGGAG+TGG | 0.564909 | 4_1:-2003431 | Msa0529000:CDS |
| AATTCAGAGGGAGAATCCAT+TGG | 0.572843 | 4_1:-2003386 | Msa0529000:CDS |
| TAAGAGCTCATGGCCAGAGT+TGG | 0.573671 | 4_1:-2003440 | Msa0529000:CDS |
| AGCTCATGGCCAGAGTTGGT+TGG | 0.578782 | 4_1:-2003436 | Msa0529000:CDS |
| TAAAGATGGAATTGTCACTC+AGG | 0.589757 | 4_1:-2003287 | Msa0529000:CDS |
| AGCAGAAGCTACAATTCAGA+GGG | 0.593359 | 4_1:-2003398 | Msa0529000:CDS |
| TAGCAGAAGCTACAATTCAG+AGG | 0.596029 | 4_1:-2003399 | Msa0529000:CDS |
| CCTGTCGTTGCGTAAGTCGT+CGG | 0.616539 | 4_1:+2003327 | None:intergenic |
| CGACGACTTACGCAACGACA+GGG | 0.619969 | 4_1:-2003326 | Msa0529000:CDS |
| CAATTGGATAGAAAGTGTCA+TGG | 0.634335 | 4_1:-2003258 | Msa0529000:exon |
| ACAATGATGGCATTCACCAA+TGG | 0.650325 | 4_1:+2003370 | None:intergenic |
| AAAATGTCTGATGAATGCAA+AGG | 0.675933 | 4_1:-2003573 | Msa0529000:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATGAATAATAAATTAAA+TGG | - | chr4_1:2003209-2003228 | Msa0529000:three_prime_UTR | 10.0% |
| !! | ATAAATTTAATGTTTCAATA+AGG | - | chr4_1:2003528-2003547 | Msa0529000:intron | 10.0% |
| !! | TATAATAAGTAGTATACAAT+TGG | + | chr4_1:2003567-2003586 | None:intergenic | 15.0% |
| !! | AATTGCAAAAAGAAAGAAAA+AGG | - | chr4_1:2003095-2003114 | Msa0529000:three_prime_UTR | 20.0% |
| !! | AAAATAGTCATACATATTGA+AGG | - | chr4_1:2003123-2003142 | Msa0529000:three_prime_UTR | 20.0% |
| !! | GAAACATTAAATTTATGACT+TGG | + | chr4_1:2003524-2003543 | None:intergenic | 20.0% |
| ! | TACATATTGAAGGATCAAAA+AGG | - | chr4_1:2003133-2003152 | Msa0529000:three_prime_UTR | 25.0% |
| !!! | GTTTTTTATTTTCTATGCCA+AGG | - | chr4_1:2003638-2003657 | Msa0529000:five_prime_UTR | 25.0% |
| TTTGCAATTCTTCTTGTGTT+TGG | + | chr4_1:2003084-2003103 | None:intergenic | 30.0% | |
| AAAATGTCTGATGAATGCAA+AGG | - | chr4_1:2003162-2003181 | Msa0529000:three_prime_UTR | 30.0% | |
| CAGTGTCATATATAATTCCT+TGG | + | chr4_1:2003658-2003677 | None:intergenic | 30.0% | |
| ! | TGGGTTTGGGTTAATAAAGA+TGG | - | chr4_1:2003434-2003453 | Msa0529000:CDS | 35.0% |
| TAAAGATGGAATTGTCACTC+AGG | - | chr4_1:2003448-2003467 | Msa0529000:intron | 35.0% | |
| GACACTTTCTATCCAATTGT+TGG | + | chr4_1:2003476-2003495 | None:intergenic | 35.0% | |
| !! | CAATTGGATAGAAAGTGTCA+TGG | - | chr4_1:2003477-2003496 | Msa0529000:intron | 35.0% |
| GTCTGATGAATGCAAAGGTA+AGG | - | chr4_1:2003167-2003186 | Msa0529000:three_prime_UTR | 40.0% | |
| TAGCAGAAGCTACAATTCAG+AGG | - | chr4_1:2003336-2003355 | Msa0529000:CDS | 40.0% | |
| AGCAGAAGCTACAATTCAGA+GGG | - | chr4_1:2003337-2003356 | Msa0529000:CDS | 40.0% | |
| AATTCAGAGGGAGAATCCAT+TGG | - | chr4_1:2003349-2003368 | Msa0529000:CDS | 40.0% | |
| ACAATGATGGCATTCACCAA+TGG | + | chr4_1:2003368-2003387 | None:intergenic | 40.0% | |
| AATGCCATCATTGTGCTAGA+AGG | - | chr4_1:2003374-2003393 | Msa0529000:CDS | 40.0% | |
| AGATCCTTCTAGCACAATGA+TGG | + | chr4_1:2003381-2003400 | None:intergenic | 40.0% | |
| TGTTCTCAGCTAAGAGCTCA+TGG | - | chr4_1:2003285-2003304 | Msa0529000:CDS | 45.0% | |
| GTCACTCAGGTTCCAACAAT+TGG | - | chr4_1:2003461-2003480 | Msa0529000:intron | 45.0% | |
| !!! | AAATTTTTATTATAATTTGA+TGG | - | chr4_1:2003238-2003257 | Msa0529000:three_prime_UTR | 5.0% |
| TAAGAGCTCATGGCCAGAGT+TGG | - | chr4_1:2003295-2003314 | Msa0529000:CDS | 50.0% | |
| GTTGGTTGGAGTGGAAGGAA+AGG | - | chr4_1:2003313-2003332 | Msa0529000:CDS | 50.0% | |
| ACTTACGCAACGACAGGGTT+TGG | - | chr4_1:2003414-2003433 | Msa0529000:CDS | 50.0% | |
| CTTACGCAACGACAGGGTTT+GGG | - | chr4_1:2003415-2003434 | Msa0529000:CDS | 50.0% | |
| ! | CAACGACAGGGTTTGGGTTT+GGG | - | chr4_1:2003421-2003440 | Msa0529000:CDS | 50.0% |
| ! | AGCTCATGGCCAGAGTTGGT+TGG | - | chr4_1:2003299-2003318 | Msa0529000:CDS | 55.0% |
| ! | ATGGCCAGAGTTGGTTGGAG+TGG | - | chr4_1:2003304-2003323 | Msa0529000:CDS | 55.0% |
| CCTTCCACTCCAACCAACTC+TGG | + | chr4_1:2003311-2003330 | None:intergenic | 55.0% | |
| ! | CCAGAGTTGGTTGGAGTGGA+AGG | - | chr4_1:2003308-2003327 | Msa0529000:CDS | 55.0% |
| CCTGTCGTTGCGTAAGTCGT+CGG | + | chr4_1:2003411-2003430 | None:intergenic | 55.0% | |
| CGACGACTTACGCAACGACA+GGG | - | chr4_1:2003409-2003428 | Msa0529000:CDS | 55.0% | |
| ! | GCAACGACAGGGTTTGGGTT+TGG | - | chr4_1:2003420-2003439 | Msa0529000:CDS | 55.0% |
| CCGACGACTTACGCAACGAC+AGG | - | chr4_1:2003408-2003427 | Msa0529000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 2003064 | 2003693 | 2003064 | ID=Msa0529000;Name=Msa0529000 |
| chr4_1 | mRNA | 2003064 | 2003693 | 2003064 | ID=Msa0529000-mRNA-1;Parent=Msa0529000;Name=Msa0529000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=101|1|1|1|1|1|2|206|70 |
| chr4_1 | exon | 2003064 | 2003463 | 2003064 | ID=Msa0529000-mRNA-1:exon:644;Parent=Msa0529000-mRNA-1 |
| chr4_1 | exon | 2003574 | 2003693 | 2003574 | ID=Msa0529000-mRNA-1:exon:643;Parent=Msa0529000-mRNA-1 |
| chr4_1 | five_prime_UTR | 2003593 | 2003693 | 2003593 | ID=Msa0529000-mRNA-1:five_prime_utr;Parent=Msa0529000-mRNA-1 |
| chr4_1 | CDS | 2003574 | 2003592 | 2003574 | ID=Msa0529000-mRNA-1:cds;Parent=Msa0529000-mRNA-1 |
| chr4_1 | CDS | 2003270 | 2003463 | 2003270 | ID=Msa0529000-mRNA-1:cds;Parent=Msa0529000-mRNA-1 |
| chr4_1 | three_prime_UTR | 2003064 | 2003269 | 2003064 | ID=Msa0529000-mRNA-1:three_prime_utr;Parent=Msa0529000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
