AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0456490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456490 MtrunA17_Chr3g0103451 99.785 465 1 0 1 465 1 465 0.0 946
Msa0456490 MtrunA17_Chr3g0135461 44.206 466 233 7 1 448 1 457 1.52e-127 377
Msa0456490 MtrunA17_Chr6g0459171 35.743 249 113 5 4 237 1 217 1.31e-37 137
Msa0456490 MtrunA17_Chr6g0459181 36.406 217 96 3 239 448 27 208 1.57e-33 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456490 AT5G67630.1 85.867 467 62 1 1 463 1 467 0.0 805
Msa0456490 AT3G49830.1 79.601 451 91 1 1 450 1 451 0.0 748
Msa0456490 AT5G22330.1 43.791 459 245 5 1 448 1 457 4.04e-126 374

Find 143 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAGAACGCAGGGATTTC+TGG 0.168140 3_3:-50058495 Msa0456490:intron
CTGTCTTTCCCTTTCTCTTT+TGG 0.168943 3_3:+50058009 None:intergenic
AGATGTTTCTACACCTATTT+TGG 0.215981 3_3:+50058076 None:intergenic
GTTGGTAGCCACAACTAAAA+TGG 0.256258 3_3:+50058283 None:intergenic
AAGCATTTGTTAACCAAAAT+AGG 0.257783 3_3:-50058089 Msa0456490:CDS
ATGGAGACGGTTTATGATTT+GGG 0.259809 3_3:-50060756 Msa0456490:CDS
GGATGAAATTCGCAAAATTC+TGG 0.273264 3_3:-50058156 Msa0456490:CDS
GATGGAGACGGTTTATGATT+TGG 0.291335 3_3:-50060757 Msa0456490:CDS
GGCTATAGGAGTGAGAATTA+AGG 0.320370 3_3:-50060886 Msa0456490:CDS
GTGAAATTCGTGCAGAAGTC+AGG 0.327601 3_3:-50058451 Msa0456490:CDS
TTGAATTGGATGATATTAAT+CGG 0.343045 3_3:-50057986 Msa0456490:CDS
AAAGGGAAAGACAGTTGAAT+TGG 0.347244 3_3:-50058000 Msa0456490:CDS
ATTGCGATTGATAAAGCTTC+AGG 0.355348 3_3:-50060681 Msa0456490:CDS
CAATACATGTTCAGTGAAAC+AGG 0.377429 3_3:-50057903 Msa0456490:CDS
CTCTATGCGCGTTAGGTCGC+GGG 0.381377 3_3:+50061223 None:intergenic
ATTGATCGTCCGGCGGTGGC+TGG 0.381879 3_3:-50060822 Msa0456490:CDS
GGAGACGGCGCGTGGCTCTA+AGG 0.387209 3_3:+50061154 None:intergenic
CGAATTTCATCCTCAGTGTA+AGG 0.394218 3_3:+50058167 None:intergenic
ACTCCTTTCGCCATGATTGC+TGG 0.398150 3_3:-50060969 Msa0456490:CDS
GGCTGGAGCTGCGGCGAAGA+CGG 0.399233 3_3:-50060805 Msa0456490:CDS
CGAATAATAATTTGAGGGTC+TGG 0.401715 3_3:+50057535 None:intergenic
GGCGAGGAGAACAGCGCGTC+CGG 0.402500 3_3:+50061055 None:intergenic
GCTGGAGCTGCGGCGAAGAC+GGG 0.407291 3_3:-50060804 Msa0456490:CDS
TTCATTCCTCAATCGGGCTC+TGG 0.407946 3_3:-50058321 Msa0456490:CDS
CCACGCGCTCTATGCGCGTT+AGG 0.424297 3_3:+50061216 None:intergenic
AAGATCGACACAGTACTTGA+TGG 0.429777 3_3:-50057937 Msa0456490:CDS
TCTAATCACAGCATCTGCTT+TGG 0.431645 3_3:-50058036 Msa0456490:CDS
GCTCTATGCGCGTTAGGTCG+CGG 0.432519 3_3:+50061222 None:intergenic
CGGCTTTACGAGCGGAGACT+TGG 0.439804 3_3:+50061117 None:intergenic
CGAAGATGATTGAGGCGATT+GGG 0.440792 3_3:-50060731 Msa0456490:CDS
CGTCATGGTTGTGGCGGCGA+TGG 0.441200 3_3:+50061265 None:intergenic
CTCGCCGGTCAGCCAGGTAC+TGG 0.441713 3_3:-50061038 Msa0456490:CDS
CTCTTCTGCAACTCACCATC+AGG 0.442493 3_3:+50060576 None:intergenic
GCGAAGATGATTGAGGCGAT+TGG 0.445428 3_3:-50060732 Msa0456490:CDS
GTTCTCCTCGCCGGTCAGCC+AGG 0.456290 3_3:-50061044 Msa0456490:CDS
CACTCACACATCCGCGGCCT+CGG 0.458095 3_3:-50061188 Msa0456490:CDS
TGAATTGGATGATATTAATC+GGG 0.459515 3_3:-50057985 Msa0456490:CDS
TCAGGGAAGATTACGAAGCT+TGG 0.461687 3_3:-50060663 Msa0456490:CDS
CAGGGAAGATTACGAAGCTT+GGG 0.462304 3_3:-50060662 Msa0456490:CDS
AGTGAGAATTAAGGAGGAAA+CGG 0.465530 3_3:-50060877 Msa0456490:CDS
GCCGACCATGCCTTCGGAGA+CGG 0.465787 3_3:+50061139 None:intergenic
GAGGAAACGGAGGTGATTGA+AGG 0.467645 3_3:-50060864 Msa0456490:CDS
GTTGAGTAGAGATGATGAGT+AGG 0.468747 3_3:+50058189 None:intergenic
GGCAAAACCGCTATTGCAAT+GGG 0.477742 3_3:-50061017 Msa0456490:CDS
CATTCTCCAGAGCCCGATTG+AGG 0.480580 3_3:+50058315 None:intergenic
GTGTGCGCGCTCTCTACTAC+AGG 0.480745 3_3:+50061345 None:intergenic
CTTCCGAAAAGCTTGTGTTA+AGG 0.481406 3_3:+50060908 None:intergenic
TTGGTAGCCACAACTAAAAT+GGG 0.483901 3_3:+50058284 None:intergenic
GACTTGGCCGACCATGCCTT+CGG 0.485767 3_3:+50061133 None:intergenic
CTGAGGTGAATGAATTTCAC+TGG 0.488607 3_3:+50057847 None:intergenic
GTGGCAGAGTGGAAAGAAGA+AGG 0.488801 3_3:-50058410 Msa0456490:CDS
CGCCATTCCCATTGCAATAG+CGG 0.489903 3_3:+50061010 None:intergenic
TAGGCGATCAAGTAGATCAA+TGG 0.491544 3_3:+50058208 None:intergenic
AAGCTCACTACCAGCAATCA+TGG 0.493183 3_3:+50060959 None:intergenic
AGATTGATGTTATTAATAGC+AGG 0.494305 3_3:-50060521 Msa0456490:intron
ACGAATTTCACCTGTGTCAC+CGG 0.503495 3_3:+50058463 None:intergenic
TGGCAAAACCGCTATTGCAA+TGG 0.507380 3_3:-50061018 Msa0456490:CDS
GGAAGGAGAAAGTGACGAGT+GGG 0.509018 3_3:-50060710 Msa0456490:CDS
AGGCGATCAAGTAGATCAAT+GGG 0.510466 3_3:+50058209 None:intergenic
TCATGTCTACGTCTTCCTCT+TGG 0.512507 3_3:+50058123 None:intergenic
GCCGCAGCTCCAGCCACCGC+CGG 0.514286 3_3:+50060813 None:intergenic
TCAGATTGATCGTCCGGCGG+TGG 0.514313 3_3:-50060826 Msa0456490:CDS
TGAGGTTCAGATTGATCGTC+CGG 0.515205 3_3:-50060832 Msa0456490:CDS
AAGAGTCGAGACCGAGGCCG+CGG 0.517810 3_3:+50061177 None:intergenic
TTTGCCAGTACCTGGCTGAC+CGG 0.518638 3_3:+50061034 None:intergenic
GGGAAGGAGAAAGTGACGAG+TGG 0.523320 3_3:-50060711 Msa0456490:CDS
TGTGTACCTCATCAATGAAA+AGG 0.533089 3_3:+50058363 None:intergenic
ACATGACGAATAATAATTTG+AGG 0.534042 3_3:+50057529 None:intergenic
TCCGGCGGTGGCTGGAGCTG+CGG 0.535910 3_3:-50060814 Msa0456490:CDS
TCGTGTTAATTTCAGAACGC+AGG 0.541700 3_3:-50058504 Msa0456490:intron
TTTGGCATGCCAAAAGAGAA+AGG 0.542916 3_3:-50058018 Msa0456490:CDS
GAGCCACGCGCCGTCTCCGA+AGG 0.543555 3_3:-50061149 Msa0456490:CDS
TGGAGACGGTTTATGATTTG+GGG 0.546299 3_3:-50060755 Msa0456490:CDS
CATGACGAATAATAATTTGA+GGG 0.548161 3_3:+50057530 None:intergenic
GGAAAGGCAGAGATTGTGCC+TGG 0.550110 3_3:-50058389 Msa0456490:CDS
TTGCGATTGATAAAGCTTCA+GGG 0.551588 3_3:-50060680 Msa0456490:CDS
GGTTGTGGCGGCGATGGAGA+TGG 0.555807 3_3:+50061271 None:intergenic
AACCGCTATTGCAATGGGAA+TGG 0.556997 3_3:-50061012 Msa0456490:CDS
AACGGAGGTGATTGAAGGTG+AGG 0.557415 3_3:-50060859 Msa0456490:CDS
GGACGCGCTGTTCTCCTCGC+CGG 0.560307 3_3:-50061053 Msa0456490:CDS
CTGGAGCTGCGGCGAAGACG+GGG 0.560612 3_3:-50060803 Msa0456490:CDS
TATAGGAGTGAGAATTAAGG+AGG 0.560876 3_3:-50060883 Msa0456490:CDS
TTGGCATGCCAAAAGAGAAA+GGG 0.561252 3_3:-50058017 Msa0456490:CDS
CGTGTTAATTTCAGAACGCA+GGG 0.562879 3_3:-50058503 Msa0456490:intron
AAGTTTGTGCAGTGTCCTGA+TGG 0.565334 3_3:-50060591 Msa0456490:CDS
ATGGGAATGGCGAAATCCCT+CGG 0.565356 3_3:-50060999 Msa0456490:CDS
GCCGTCTCCGAAGGCATGGT+CGG 0.566014 3_3:-50061140 Msa0456490:CDS
CCTAACGCGCATAGAGCGCG+TGG 0.566275 3_3:-50061216 Msa0456490:CDS
AGATGCTGTGATTAGATGAA+TGG 0.566370 3_3:+50058043 None:intergenic
ACGCGCCGTCTCCGAAGGCA+TGG 0.570079 3_3:-50061144 Msa0456490:CDS
GTCTCCGCTCGTAAAGCCGC+CGG 0.573288 3_3:-50061113 Msa0456490:CDS
TGGTGAGTTGCAGAAGAGGA+AGG 0.574351 3_3:-50060571 Msa0456490:CDS
GATTGAAGGTGAGGTTGTTG+AGG 0.575785 3_3:-50060850 Msa0456490:CDS
ATGCCTTCGGAGACGGCGCG+TGG 0.577386 3_3:+50061146 None:intergenic
AGAGGCATCACAACTATTCG+AGG 0.577787 3_3:-50058260 Msa0456490:CDS
ATTTCACTGGACCATAGCAT+TGG 0.578908 3_3:+50057860 None:intergenic
CGTTATCCTCCAGATGATCA+AGG 0.584244 3_3:-50061090 Msa0456490:CDS
TACCGTCCTTGATCATCTGG+AGG 0.584863 3_3:+50061084 None:intergenic
ATCAAGGACGGTAAAATCGC+CGG 0.587643 3_3:-50061074 Msa0456490:CDS
TGAAATTCGTGCAGAAGTCA+GGG 0.588620 3_3:-50058450 Msa0456490:CDS
AATAGTTGTGATGCCTCTGT+TGG 0.588977 3_3:+50058265 None:intergenic
GGAACAAATTGACACGAAAG+TGG 0.589018 3_3:-50058429 Msa0456490:CDS
AGAGTGGAAAGAAGAAGGAA+AGG 0.593025 3_3:-50058405 Msa0456490:CDS
GACGTTGAAGTCGACAGAGA+TGG 0.594302 3_3:-50060775 Msa0456490:CDS
GAGAATTAAGGAGGAAACGG+AGG 0.595347 3_3:-50060874 Msa0456490:CDS
TGAGTTGCAGAAGAGGAAGG+AGG 0.595760 3_3:-50060568 Msa0456490:CDS
ACAAATTACAAATCCCCACA+TGG 0.598468 3_3:-50058236 Msa0456490:CDS
AACGCCGGCGGCTTTACGAG+CGG 0.602307 3_3:+50061109 None:intergenic
ATCTACAGCATTCACGTGAG+AGG 0.604187 3_3:-50057688 Msa0456490:three_prime_UTR
GATGATTGAGGCGATTGGGA+AGG 0.606012 3_3:-50060727 Msa0456490:CDS
GGAGACGGTTTATGATTTGG+GGG 0.606487 3_3:-50060754 Msa0456490:CDS
TGAAGACGACACCAATGCTA+TGG 0.611055 3_3:-50057871 Msa0456490:CDS
CTGATGGTGAGTTGCAGAAG+AGG 0.612555 3_3:-50060575 Msa0456490:CDS
GTTGCAGAAGAGGAAGGAGG+TGG 0.615066 3_3:-50060565 Msa0456490:CDS
GAAGGAGAAAGTGACGAGTG+GGG 0.620381 3_3:-50060709 Msa0456490:CDS
CTACCAGCAATCATGGCGAA+AGG 0.622667 3_3:+50060966 None:intergenic
AATTACAAAGTCTCAAACTG+AGG 0.624855 3_3:+50057830 None:intergenic
GATCAATGGGAATCCCATGT+GGG 0.625545 3_3:+50058222 None:intergenic
TTAGTTGTGGCTACCAACAG+AGG 0.628149 3_3:-50058278 Msa0456490:CDS
GGCGATGGAGATGGAGAGAG+TGG 0.628869 3_3:+50061280 None:intergenic
CATCGCCGCCACAACCATGA+CGG 0.632511 3_3:-50061264 Msa0456490:exon
AATTAAGTGCAATAACCCAC+CGG 0.640135 3_3:+50057759 None:intergenic
TAGCTCCGTCATGGTTGTGG+CGG 0.643085 3_3:+50061259 None:intergenic
GAAAGGAGTCTCAAGACCGA+GGG 0.644534 3_3:+50060983 None:intergenic
CAGTACCTGGCTGACCGGCG+AGG 0.645488 3_3:+50061039 None:intergenic
CACTGCACAAACTTCACCTG+AGG 0.646673 3_3:+50060600 None:intergenic
CGAAAGGAGTCTCAAGACCG+AGG 0.650449 3_3:+50060982 None:intergenic
TTGACACGAAAGTGGCAGAG+TGG 0.654228 3_3:-50058421 Msa0456490:CDS
ATCCTCCAGATGATCAAGGA+CGG 0.657130 3_3:-50061086 Msa0456490:CDS
AGATCAATGGGAATCCCATG+TGG 0.657627 3_3:+50058221 None:intergenic
TCATCAATGAAAAGGACACC+AGG 0.662622 3_3:+50058371 None:intergenic
GAAGTCGACAGAGATGGAGA+CGG 0.663443 3_3:-50060769 Msa0456490:CDS
GATCATCTGGAGGATAACGC+CGG 0.668449 3_3:+50061094 None:intergenic
GAAGACGTAGACATGAGTGA+AGG 0.670929 3_3:-50058116 Msa0456490:CDS
ATCAATGGGAATCCCATGTG+GGG 0.673789 3_3:+50058223 None:intergenic
CAAATTACAAATCCCCACAT+GGG 0.679587 3_3:-50058235 Msa0456490:CDS
CTAACGCGCATAGAGCGCGT+GGG 0.688219 3_3:-50061215 Msa0456490:CDS
TCTGGATATCAGATGCCAAG+AGG 0.689336 3_3:-50058138 Msa0456490:CDS
CTAAGGAAGAGTCGAGACCG+AGG 0.697389 3_3:+50061171 None:intergenic
GGAGCACACTCACACATCCG+CGG 0.702267 3_3:-50061194 Msa0456490:CDS
GGTTCAGATTGATCGTCCGG+CGG 0.711952 3_3:-50060829 Msa0456490:CDS
CATCTGGAGGATAACGCCGG+CGG 0.729769 3_3:+50061097 None:intergenic
CTCTACTCAACCTTACACTG+AGG 0.741639 3_3:-50058177 Msa0456490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATGAAAAGCAAAAAAA+GGG + chr3_3:50058402-50058421 None:intergenic 15.0%
!! AAATTATGAAAAGCAAAAAA+AGG + chr3_3:50058403-50058422 None:intergenic 15.0%
!!! AATTATGTTGTTTTTACAAA+TGG + chr3_3:50058524-50058543 None:intergenic 15.0%
!! ATATGAAATAAAAACTATAC+AGG + chr3_3:50058848-50058867 None:intergenic 15.0%
!!! TTCAAAAAAAAAACATTTTG+GGG + chr3_3:50059330-50059349 None:intergenic 15.0%
!!! GTTCAAAAAAAAAACATTTT+GGG + chr3_3:50059331-50059350 None:intergenic 15.0%
!!! TGTTCAAAAAAAAAACATTT+TGG + chr3_3:50059332-50059351 None:intergenic 15.0%
!! AAATGTTAAGTCATATAAAA+AGG - chr3_3:50059364-50059383 Msa0456490:intron 15.0%
!!! TGTTAATTAGCTTTATATTA+AGG - chr3_3:50059415-50059434 Msa0456490:intron 15.0%
!! ATTATGAAAAGCAAAAAAAG+GGG + chr3_3:50058401-50058420 None:intergenic 20.0%
!!! TTGAAGTTATGTTTGTTTTT+AGG - chr3_3:50058464-50058483 Msa0456490:CDS 20.0%
!!! TGAAGTTATGTTTGTTTTTA+GGG - chr3_3:50058465-50058484 Msa0456490:CDS 20.0%
!!! TTGATCAGTTCTAAAAAATT+AGG - chr3_3:50058955-50058974 Msa0456490:intron 20.0%
!!! TAAGGTAATGTTTGTTTTTA+TGG - chr3_3:50059433-50059452 Msa0456490:intron 20.0%
!!! ACTAATCTAAAACAAATCAT+TGG + chr3_3:50059788-50059807 None:intergenic 20.0%
!!! TTAATAGAAAGTTTTACATC+TGG + chr3_3:50060271-50060290 None:intergenic 20.0%
!!! TATTAAATTTTCCAACTTGT+TGG - chr3_3:50060285-50060304 Msa0456490:intron 20.0%
!! TTGAATTGGATGATATTAAT+CGG - chr3_3:50060894-50060913 Msa0456490:CDS 20.0%
! AGATTGATGTTATTAATAGC+AGG - chr3_3:50058359-50058378 Msa0456490:CDS 25.0%
! TCTTATAACTTACATGCAAA+CGG + chr3_3:50058598-50058617 None:intergenic 25.0%
! TTGAAATTGAAAACAGCTTA+TGG - chr3_3:50058663-50058682 Msa0456490:intron 25.0%
! CTATACTTCTCAATTGTATT+TGG + chr3_3:50058910-50058929 None:intergenic 25.0%
!!! AAATTAGGTTGTTTCTTTGA+TGG - chr3_3:50058970-50058989 Msa0456490:intron 25.0%
!! TTTTTGTGATGTGATCATTT+TGG - chr3_3:50059147-50059166 Msa0456490:intron 25.0%
!!! AAAAACATTTTGGGGAAAAA+GGG + chr3_3:50059322-50059341 None:intergenic 25.0%
!!! AAAAAACATTTTGGGGAAAA+AGG + chr3_3:50059323-50059342 None:intergenic 25.0%
! AGATTATCAATGATGTATGT+AGG - chr3_3:50059466-50059485 Msa0456490:intron 25.0%
! CTTCAGAAAAGAGATATTAT+GGG + chr3_3:50059699-50059718 None:intergenic 25.0%
! ACTTCAGAAAAGAGATATTA+TGG + chr3_3:50059700-50059719 None:intergenic 25.0%
! GAAGTTATAGTTTGAGTAAT+TGG - chr3_3:50059715-50059734 Msa0456490:intron 25.0%
! GTTAAAAGAAACTCATCATA+TGG + chr3_3:50059831-50059850 None:intergenic 25.0%
! ATAGATCTGTGTCAAAAATT+TGG - chr3_3:50059873-50059892 Msa0456490:intron 25.0%
!! TGGTTGTTCTTTTATGTTTT+TGG - chr3_3:50059893-50059912 Msa0456490:intron 25.0%
!!! GAATGATTTTAGAGAGAAAA+GGG + chr3_3:50060245-50060264 None:intergenic 25.0%
!! AAGCATTTGTTAACCAAAAT+AGG - chr3_3:50060791-50060810 Msa0456490:CDS 25.0%
! TGAATTGGATGATATTAATC+GGG - chr3_3:50060895-50060914 Msa0456490:CDS 25.0%
!! ATACAACTTTGAAAAAACAG+CGG + chr3_3:50061166-50061185 None:intergenic 25.0%
! CATGACGAATAATAATTTGA+GGG + chr3_3:50061353-50061372 None:intergenic 25.0%
! ACATGACGAATAATAATTTG+AGG + chr3_3:50061354-50061373 None:intergenic 25.0%
! TTTGAGAACGAAAGGTTTTA+GGG + chr3_3:50057577-50057596 None:intergenic 30.0%
!! TTTTGAGAACGAAAGGTTTT+AGG + chr3_3:50057578-50057597 None:intergenic 30.0%
TCAAATAAGTGAATCCGAAT+AGG - chr3_3:50058734-50058753 Msa0456490:intron 30.0%
AGAGATAATATCGACCTATT+CGG + chr3_3:50058751-50058770 None:intergenic 30.0%
CTAATCCAAAACAAATGATG+TGG + chr3_3:50058820-50058839 None:intergenic 30.0%
TCTAAACGTCAAACAAAACT+TGG + chr3_3:50059046-50059065 None:intergenic 30.0%
AATTTATACAGACTTGCCAA+TGG - chr3_3:50059098-50059117 Msa0456490:intron 30.0%
TATCTTGTGTTTATCCAAAC+AGG + chr3_3:50059493-50059512 None:intergenic 30.0%
ACTGTTTCCATAAGTTATCT+TGG - chr3_3:50059547-50059566 Msa0456490:intron 30.0%
CTAGTAGAAAAGCTGAAATA+AGG - chr3_3:50059660-50059679 Msa0456490:intron 30.0%
TGAAATAAGGCAATCTAAAC+TGG - chr3_3:50059673-50059692 Msa0456490:intron 30.0%
! TTAACTGTGTGACTTTGAAA+TGG - chr3_3:50059846-50059865 Msa0456490:intron 30.0%
!! TAACTGTGTGACTTTGAAAT+GGG - chr3_3:50059847-50059866 Msa0456490:intron 30.0%
! TGTTATCCAAGTTTTCTATG+AGG - chr3_3:50059954-50059973 Msa0456490:intron 30.0%
GTAAATCCTCATAGAAAACT+TGG + chr3_3:50059963-50059982 None:intergenic 30.0%
!!! CATGATGCTTTATTTTTGTG+AGG - chr3_3:50060064-50060083 Msa0456490:intron 30.0%
! TTTTTGTGAGGTGATCATTT+TGG - chr3_3:50060076-50060095 Msa0456490:intron 30.0%
!! GGAATGATTTTAGAGAGAAA+AGG + chr3_3:50060246-50060265 None:intergenic 30.0%
! TAGAAAGTTTTACATCTGGA+AGG + chr3_3:50060267-50060286 None:intergenic 30.0%
CAACTTGTAACACAAGAAAA+AGG + chr3_3:50060330-50060349 None:intergenic 30.0%
!! AGATGTTTCTACACCTATTT+TGG + chr3_3:50060807-50060826 None:intergenic 30.0%
!! TCGGGTTTACAATTTGTTTT+TGG - chr3_3:50060913-50060932 Msa0456490:CDS 30.0%
AATTACAAAGTCTCAAACTG+AGG + chr3_3:50061053-50061072 None:intergenic 30.0%
!! CAGCATTTTATTTCATGATC+CGG - chr3_3:50061102-50061121 Msa0456490:CDS 30.0%
!! ATTTTATTTCATGATCCGGT+GGG - chr3_3:50061106-50061125 Msa0456490:CDS 30.0%
! TACAACTTTGAAAAAACAGC+GGG + chr3_3:50061165-50061184 None:intergenic 30.0%
!!! CGAAAGGTTTTAGGGTTTTA+GGG + chr3_3:50057569-50057588 None:intergenic 35.0%
!!! ACGAAAGGTTTTAGGGTTTT+AGG + chr3_3:50057570-50057589 None:intergenic 35.0%
! AAGCCTTAACACAAGCTTTT+CGG - chr3_3:50057969-50057988 Msa0456490:CDS 35.0%
TATAGGAGTGAGAATTAAGG+AGG - chr3_3:50057997-50058016 Msa0456490:CDS 35.0%
AGTGAGAATTAAGGAGGAAA+CGG - chr3_3:50058003-50058022 Msa0456490:CDS 35.0%
ATGGAGACGGTTTATGATTT+GGG - chr3_3:50058124-50058143 Msa0456490:CDS 35.0%
ATTGCGATTGATAAAGCTTC+AGG - chr3_3:50058199-50058218 Msa0456490:CDS 35.0%
TTGCGATTGATAAAGCTTCA+GGG - chr3_3:50058200-50058219 Msa0456490:CDS 35.0%
!! GGTAAATGAAAGTGTTTCCA+TGG - chr3_3:50058486-50058505 Msa0456490:CDS 35.0%
AGTGTTTCCATGGTTTATGT+AGG - chr3_3:50058496-50058515 Msa0456490:intron 35.0%
AATGGTACCTACATAAACCA+TGG + chr3_3:50058506-50058525 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATAC+CGG - chr3_3:50058622-50058641 Msa0456490:intron 35.0%
ACATATTTCCATTAGCTCAC+CGG + chr3_3:50058644-50058663 None:intergenic 35.0%
TTGCATAAGTTCTCCCATAT+AGG - chr3_3:50058702-50058721 Msa0456490:intron 35.0%
TTGAGCTTATGAGCCTATAT+GGG + chr3_3:50058718-50058737 None:intergenic 35.0%
TTTGAGCTTATGAGCCTATA+TGG + chr3_3:50058719-50058738 None:intergenic 35.0%
! AGAAGCCACATCATTTGTTT+TGG - chr3_3:50058812-50058831 Msa0456490:intron 35.0%
! AGTTGTGTGACTTTAGAAAC+TGG - chr3_3:50058928-50058947 Msa0456490:intron 35.0%
!!! TTGATGGTTTTGAAGATTCC+TGG - chr3_3:50058986-50059005 Msa0456490:intron 35.0%
GAACATTGCAATACAACTCT+AGG + chr3_3:50059022-50059041 None:intergenic 35.0%
GTTTCCATAAGTTATCTTGG+AGG - chr3_3:50059550-50059569 Msa0456490:intron 35.0%
AAGTCCTCCAAGATAACTTA+TGG + chr3_3:50059557-50059576 None:intergenic 35.0%
AAGTTATCTTGGAGGACTTA+TGG - chr3_3:50059558-50059577 Msa0456490:intron 35.0%
AGCTAAACAAACCAACAAGT+TGG + chr3_3:50060299-50060318 None:intergenic 35.0%
CTTGTAACACAAGAAAAAGG+AGG + chr3_3:50060327-50060346 None:intergenic 35.0%
TTGTGTTACAAGTTGCTTCT+TGG - chr3_3:50060335-50060354 Msa0456490:intron 35.0%
TGTGTACCTCATCAATGAAA+AGG + chr3_3:50060520-50060539 None:intergenic 35.0%
! AGTGCTTTTCATTCCTCAAT+CGG - chr3_3:50060552-50060571 Msa0456490:CDS 35.0%
!!! AATGTCTCCCATTTTAGTTG+TGG - chr3_3:50060589-50060608 Msa0456490:CDS 35.0%
! TTGGTAGCCACAACTAAAAT+GGG + chr3_3:50060599-50060618 None:intergenic 35.0%
ACAAATTACAAATCCCCACA+TGG - chr3_3:50060644-50060663 Msa0456490:CDS 35.0%
CAAATTACAAATCCCCACAT+GGG - chr3_3:50060645-50060664 Msa0456490:CDS 35.0%
GGATGAAATTCGCAAAATTC+TGG - chr3_3:50060724-50060743 Msa0456490:CDS 35.0%
AGATGCTGTGATTAGATGAA+TGG + chr3_3:50060840-50060859 None:intergenic 35.0%
AAAGGGAAAGACAGTTGAAT+TGG - chr3_3:50060880-50060899 Msa0456490:CDS 35.0%
CAATACATGTTCAGTGAAAC+AGG - chr3_3:50060977-50060996 Msa0456490:CDS 35.0%
!! CATTTTATTTCATGATCCGG+TGG - chr3_3:50061105-50061124 Msa0456490:CDS 35.0%
AATTAAGTGCAATAACCCAC+CGG + chr3_3:50061124-50061143 None:intergenic 35.0%
CGAATAATAATTTGAGGGTC+TGG + chr3_3:50061348-50061367 None:intergenic 35.0%
!!! AGTGGAGTTTTGAGAACGAA+AGG + chr3_3:50057585-50057604 None:intergenic 40.0%
!!! AGAAAGTTTTAGCTCCGTCA+TGG + chr3_3:50057633-50057652 None:intergenic 40.0%
! TTTTACCGTCCTTGATCATC+TGG + chr3_3:50057802-50057821 None:intergenic 40.0%
CTTCCGAAAAGCTTGTGTTA+AGG + chr3_3:50057975-50057994 None:intergenic 40.0%
! CTTAACACAAGCTTTTCGGA+AGG - chr3_3:50057973-50057992 Msa0456490:CDS 40.0%
GGCTATAGGAGTGAGAATTA+AGG - chr3_3:50057994-50058013 Msa0456490:CDS 40.0%
GATGGAGACGGTTTATGATT+TGG - chr3_3:50058123-50058142 Msa0456490:CDS 40.0%
TGGAGACGGTTTATGATTTG+GGG - chr3_3:50058125-50058144 Msa0456490:CDS 40.0%
!! TCGAGGGATTTTGATGCTAT+GGG - chr3_3:50058256-50058275 Msa0456490:CDS 40.0%
ATGGGAGAACTTATGCAAAC+AGG + chr3_3:50058700-50058719 None:intergenic 40.0%
! ACTCTAGGAGCAAATTAACC+AGG + chr3_3:50059007-50059026 None:intergenic 40.0%
TTATACAGACTTGCCAATGG+TGG - chr3_3:50059101-50059120 Msa0456490:intron 40.0%
GAATGAGTCAATGACAGCTT+TGG - chr3_3:50059250-50059269 Msa0456490:intron 40.0%
TGATGTATGTAGGTCCTGTT+TGG - chr3_3:50059476-50059495 Msa0456490:intron 40.0%
ATTGGCTGTAATCTAGCAAG+TGG - chr3_3:50059733-50059752 Msa0456490:intron 40.0%
ATCATGCTGCTCAAGACTTA+GGG + chr3_3:50060050-50060069 None:intergenic 40.0%
ATCCCAATCTCGACGAAAAA+GGG + chr3_3:50060112-50060131 None:intergenic 40.0%
TATCCCAATCTCGACGAAAA+AGG + chr3_3:50060113-50060132 None:intergenic 40.0%
TCGTGTTAATTTCAGAACGC+AGG - chr3_3:50060376-50060395 Msa0456490:intron 40.0%
CGTGTTAATTTCAGAACGCA+GGG - chr3_3:50060377-50060396 Msa0456490:intron 40.0%
TGAAATTCGTGCAGAAGTCA+GGG - chr3_3:50060430-50060449 Msa0456490:intron 40.0%
GGAACAAATTGACACGAAAG+TGG - chr3_3:50060451-50060470 Msa0456490:intron 40.0%
AGAGTGGAAAGAAGAAGGAA+AGG - chr3_3:50060475-50060494 Msa0456490:intron 40.0%
TCATCAATGAAAAGGACACC+AGG + chr3_3:50060512-50060531 None:intergenic 40.0%
! TGGTGTCCTTTTCATTGATG+AGG - chr3_3:50060511-50060530 Msa0456490:intron 40.0%
! GTGCTTTTCATTCCTCAATC+GGG - chr3_3:50060553-50060572 Msa0456490:CDS 40.0%
!! GTTGGTAGCCACAACTAAAA+TGG + chr3_3:50060600-50060619 None:intergenic 40.0%
AATAGTTGTGATGCCTCTGT+TGG + chr3_3:50060618-50060637 None:intergenic 40.0%
AGGCGATCAAGTAGATCAAT+GGG + chr3_3:50060674-50060693 None:intergenic 40.0%
TAGGCGATCAAGTAGATCAA+TGG + chr3_3:50060675-50060694 None:intergenic 40.0%
GTTGAGTAGAGATGATGAGT+AGG + chr3_3:50060694-50060713 None:intergenic 40.0%
CGAATTTCATCCTCAGTGTA+AGG + chr3_3:50060716-50060735 None:intergenic 40.0%
TCTAATCACAGCATCTGCTT+TGG - chr3_3:50060844-50060863 Msa0456490:CDS 40.0%
TTTGGCATGCCAAAAGAGAA+AGG - chr3_3:50060862-50060881 Msa0456490:CDS 40.0%
TTGGCATGCCAAAAGAGAAA+GGG - chr3_3:50060863-50060882 Msa0456490:CDS 40.0%
! CTGTCTTTCCCTTTCTCTTT+TGG + chr3_3:50060874-50060893 None:intergenic 40.0%
AAGATCGACACAGTACTTGA+TGG - chr3_3:50060943-50060962 Msa0456490:CDS 40.0%
ATTTCACTGGACCATAGCAT+TGG + chr3_3:50061023-50061042 None:intergenic 40.0%
CTGAGGTGAATGAATTTCAC+TGG + chr3_3:50061036-50061055 None:intergenic 40.0%
! CTCTACTACAGGAGTTTTGC+TGG + chr3_3:50057527-50057546 None:intergenic 45.0%
!!! TTTTAGCTCCGTCATGGTTG+TGG + chr3_3:50057627-50057646 None:intergenic 45.0%
CGTTATCCTCCAGATGATCA+AGG - chr3_3:50057790-50057809 Msa0456490:three_prime_UTR 45.0%
ATCCTCCAGATGATCAAGGA+CGG - chr3_3:50057794-50057813 Msa0456490:three_prime_UTR 45.0%
ATCAAGGACGGTAAAATCGC+CGG - chr3_3:50057806-50057825 Msa0456490:three_prime_UTR 45.0%
TGGCAAAACCGCTATTGCAA+TGG - chr3_3:50057862-50057881 Msa0456490:exon 45.0%
GGCAAAACCGCTATTGCAAT+GGG - chr3_3:50057863-50057882 Msa0456490:CDS 45.0%
AACCGCTATTGCAATGGGAA+TGG - chr3_3:50057868-50057887 Msa0456490:CDS 45.0%
AAGCTCACTACCAGCAATCA+TGG + chr3_3:50057924-50057943 None:intergenic 45.0%
! CAAGCTTTTCGGAAGGCTAT+AGG - chr3_3:50057980-50057999 Msa0456490:CDS 45.0%
GAGAATTAAGGAGGAAACGG+AGG - chr3_3:50058006-50058025 Msa0456490:CDS 45.0%
GATTGAAGGTGAGGTTGTTG+AGG - chr3_3:50058030-50058049 Msa0456490:CDS 45.0%
TGAGGTTCAGATTGATCGTC+CGG - chr3_3:50058048-50058067 Msa0456490:CDS 45.0%
! GGAGACGGTTTATGATTTGG+GGG - chr3_3:50058126-50058145 Msa0456490:CDS 45.0%
CGAAGATGATTGAGGCGATT+GGG - chr3_3:50058149-50058168 Msa0456490:CDS 45.0%
TCAGGGAAGATTACGAAGCT+TGG - chr3_3:50058217-50058236 Msa0456490:CDS 45.0%
CAGGGAAGATTACGAAGCTT+GGG - chr3_3:50058218-50058237 Msa0456490:CDS 45.0%
! AGCTTGGGAGATCATTTTCG+CGG - chr3_3:50058233-50058252 Msa0456490:CDS 45.0%
!! GTCGAGGGATTTTGATGCTA+TGG - chr3_3:50058255-50058274 Msa0456490:CDS 45.0%
!! CGAGGGATTTTGATGCTATG+GGG - chr3_3:50058257-50058276 Msa0456490:CDS 45.0%
AAGTTTGTGCAGTGTCCTGA+TGG - chr3_3:50058289-50058308 Msa0456490:CDS 45.0%
AAGCTATACCGGTGAGCTAA+TGG - chr3_3:50058633-50058652 Msa0456490:intron 45.0%
TGATGCATCCATTGTGTGCA+TGG - chr3_3:50059067-50059086 Msa0456490:intron 45.0%
ATATACCACCATGCTACCCA+AGG + chr3_3:50059127-50059146 None:intergenic 45.0%
AGTTCTCCCAAACTGTCTCA+CGG - chr3_3:50059628-50059647 Msa0456490:intron 45.0%
CGTTGCTTACAATCAGTGCA+TGG - chr3_3:50059985-50060004 Msa0456490:intron 45.0%
TGCTTACAATCAGTGCATGG+TGG - chr3_3:50059988-50060007 Msa0456490:intron 45.0%
GCTTACAATCAGTGCATGGT+GGG - chr3_3:50059989-50060008 Msa0456490:intron 45.0%
CTTACAATCAGTGCATGGTG+GGG - chr3_3:50059990-50060009 Msa0456490:intron 45.0%
CATCATGCTGCTCAAGACTT+AGG + chr3_3:50060051-50060070 None:intergenic 45.0%
!! TGACCCTTTTTCGTCGAGAT+TGG - chr3_3:50060106-50060125 Msa0456490:intron 45.0%
!! GACCCTTTTTCGTCGAGATT+GGG - chr3_3:50060107-50060126 Msa0456490:intron 45.0%
TTTCAGAACGCAGGGATTTC+TGG - chr3_3:50060385-50060404 Msa0456490:intron 45.0%
!!! GGATTTCTGGCTCTTTTCAC+CGG - chr3_3:50060398-50060417 Msa0456490:intron 45.0%
ACGAATTTCACCTGTGTCAC+CGG + chr3_3:50060420-50060439 None:intergenic 45.0%
GTGAAATTCGTGCAGAAGTC+AGG - chr3_3:50060429-50060448 Msa0456490:intron 45.0%
TTAGTTGTGGCTACCAACAG+AGG - chr3_3:50060602-50060621 Msa0456490:CDS 45.0%
!! AGAGGCATCACAACTATTCG+AGG - chr3_3:50060620-50060639 Msa0456490:CDS 45.0%
ATCAATGGGAATCCCATGTG+GGG + chr3_3:50060660-50060679 None:intergenic 45.0%
GATCAATGGGAATCCCATGT+GGG + chr3_3:50060661-50060680 None:intergenic 45.0%
AGATCAATGGGAATCCCATG+TGG + chr3_3:50060662-50060681 None:intergenic 45.0%
CTCTACTCAACCTTACACTG+AGG - chr3_3:50060703-50060722 Msa0456490:CDS 45.0%
TCTGGATATCAGATGCCAAG+AGG - chr3_3:50060742-50060761 Msa0456490:CDS 45.0%
TCATGTCTACGTCTTCCTCT+TGG + chr3_3:50060760-50060779 None:intergenic 45.0%
GAAGACGTAGACATGAGTGA+AGG - chr3_3:50060764-50060783 Msa0456490:CDS 45.0%
TGAAGACGACACCAATGCTA+TGG - chr3_3:50061009-50061028 Msa0456490:CDS 45.0%
ATCTACAGCATTCACGTGAG+AGG - chr3_3:50061192-50061211 Msa0456490:CDS 45.0%
GATCATCTGGAGGATAACGC+CGG + chr3_3:50057789-50057808 None:intergenic 50.0%
TACCGTCCTTGATCATCTGG+AGG + chr3_3:50057799-50057818 None:intergenic 50.0%
! ATAGCGGTTTTGCCAGTACC+TGG + chr3_3:50057857-50057876 None:intergenic 50.0%
CGCCATTCCCATTGCAATAG+CGG + chr3_3:50057873-50057892 None:intergenic 50.0%
ATGGGAATGGCGAAATCCCT+CGG - chr3_3:50057881-50057900 Msa0456490:CDS 50.0%
GAAAGGAGTCTCAAGACCGA+GGG + chr3_3:50057900-50057919 None:intergenic 50.0%
ACTCCTTTCGCCATGATTGC+TGG - chr3_3:50057911-50057930 Msa0456490:CDS 50.0%
CTACCAGCAATCATGGCGAA+AGG + chr3_3:50057917-50057936 None:intergenic 50.0%
!! TGGTAGTGAGCTTTTCTCGC+TGG - chr3_3:50057931-50057950 Msa0456490:CDS 50.0%
GAGGAAACGGAGGTGATTGA+AGG - chr3_3:50058016-50058035 Msa0456490:CDS 50.0%
AACGGAGGTGATTGAAGGTG+AGG - chr3_3:50058021-50058040 Msa0456490:CDS 50.0%
GACGTTGAAGTCGACAGAGA+TGG - chr3_3:50058105-50058124 Msa0456490:CDS 50.0%
GAAGTCGACAGAGATGGAGA+CGG - chr3_3:50058111-50058130 Msa0456490:CDS 50.0%
TTTGGGGGCGAAGATGATTG+AGG - chr3_3:50058141-50058160 Msa0456490:CDS 50.0%
GCGAAGATGATTGAGGCGAT+TGG - chr3_3:50058148-50058167 Msa0456490:CDS 50.0%
GATGATTGAGGCGATTGGGA+AGG - chr3_3:50058153-50058172 Msa0456490:CDS 50.0%
GGAAGGAGAAAGTGACGAGT+GGG - chr3_3:50058170-50058189 Msa0456490:CDS 50.0%
GAAGGAGAAAGTGACGAGTG+GGG - chr3_3:50058171-50058190 Msa0456490:CDS 50.0%
! GAGATCATTTTCGCGGTCGA+GGG - chr3_3:50058240-50058259 Msa0456490:CDS 50.0%
! TTTTGATGCTATGGGGCCTC+AGG - chr3_3:50058264-50058283 Msa0456490:CDS 50.0%
CACTGCACAAACTTCACCTG+AGG + chr3_3:50058283-50058302 None:intergenic 50.0%
CTCTTCTGCAACTCACCATC+AGG + chr3_3:50058307-50058326 None:intergenic 50.0%
! CTGATGGTGAGTTGCAGAAG+AGG - chr3_3:50058305-50058324 Msa0456490:CDS 50.0%
TGGTGAGTTGCAGAAGAGGA+AGG - chr3_3:50058309-50058328 Msa0456490:CDS 50.0%
TGAGTTGCAGAAGAGGAAGG+AGG - chr3_3:50058312-50058331 Msa0456490:CDS 50.0%
CATCCATTGTGTGCATGGTG+AGG - chr3_3:50059072-50059091 Msa0456490:intron 50.0%
CTACCTCACCATGCACACAA+TGG + chr3_3:50059078-50059097 None:intergenic 50.0%
TGACCCATTGTTGCCGAGAT+CGG - chr3_3:50059177-50059196 Msa0456490:intron 50.0%
GTTCTCCCAAACTGTCTCAC+GGG - chr3_3:50059629-50059648 Msa0456490:intron 50.0%
AAGCACCCGTGAGACAGTTT+GGG + chr3_3:50059637-50059656 None:intergenic 50.0%
TAAGCACCCGTGAGACAGTT+TGG + chr3_3:50059638-50059657 None:intergenic 50.0%
CTCAAGACTTAGGGCTGACT+TGG + chr3_3:50060041-50060060 None:intergenic 50.0%
TTGACACGAAAGTGGCAGAG+TGG - chr3_3:50060459-50060478 Msa0456490:intron 50.0%
GTGGCAGAGTGGAAAGAAGA+AGG - chr3_3:50060470-50060489 Msa0456490:intron 50.0%
TTCATTCCTCAATCGGGCTC+TGG - chr3_3:50060559-50060578 Msa0456490:CDS 50.0%
TAGCTCCGTCATGGTTGTGG+CGG + chr3_3:50057624-50057643 None:intergenic 55.0%
CTAAGGAAGAGTCGAGACCG+AGG + chr3_3:50057712-50057731 None:intergenic 55.0%
TTTGCCAGTACCTGGCTGAC+CGG + chr3_3:50057849-50057868 None:intergenic 55.0%
CGAAAGGAGTCTCAAGACCG+AGG + chr3_3:50057901-50057920 None:intergenic 55.0%
GGTTCAGATTGATCGTCCGG+CGG - chr3_3:50058051-50058070 Msa0456490:CDS 55.0%
GGGAAGGAGAAAGTGACGAG+TGG - chr3_3:50058169-50058188 Msa0456490:CDS 55.0%
! GGAGATCATTTTCGCGGTCG+AGG - chr3_3:50058239-50058258 Msa0456490:CDS 55.0%
GTTGCAGAAGAGGAAGGAGG+TGG - chr3_3:50058315-50058334 Msa0456490:CDS 55.0%
AGACTTGCCAATGGTGGCCT+TGG - chr3_3:50059107-50059126 Msa0456490:intron 55.0%
GACTTGCCAATGGTGGCCTT+GGG - chr3_3:50059108-50059127 Msa0456490:intron 55.0%
ATGCTACCCAAGGCCACCAT+TGG + chr3_3:50059117-50059136 None:intergenic 55.0%
! AATGGTGGCCTTGGGTAGCA+TGG - chr3_3:50059116-50059135 Msa0456490:intron 55.0%
TCGGCAACAATGGGTCAGCA+AGG + chr3_3:50059174-50059193 None:intergenic 55.0%
GACCCATTGTTGCCGAGATC+GGG - chr3_3:50059178-50059197 Msa0456490:intron 55.0%
CTCCCGATCTCGGCAACAAT+GGG + chr3_3:50059183-50059202 None:intergenic 55.0%
TCTCCCGATCTCGGCAACAA+TGG + chr3_3:50059184-50059203 None:intergenic 55.0%
AAGTGGCCACATCATGCTGC+TGG - chr3_3:50059750-50059769 Msa0456490:intron 55.0%
AGTGGCCACATCATGCTGCT+GGG - chr3_3:50059751-50059770 Msa0456490:intron 55.0%
TGTGTCCCAGCAGCATGATG+TGG + chr3_3:50059759-50059778 None:intergenic 55.0%
TCGACGAAAAAGGGTCAGCG+AGG + chr3_3:50060103-50060122 None:intergenic 55.0%
! GCTCTTTTCACCGGTGACAC+AGG - chr3_3:50060407-50060426 Msa0456490:intron 55.0%
GGAAAGGCAGAGATTGTGCC+TGG - chr3_3:50060491-50060510 Msa0456490:intron 55.0%
CATTCTCCAGAGCCCGATTG+AGG + chr3_3:50060568-50060587 None:intergenic 55.0%
GTGTGCGCGCTCTCTACTAC+AGG + chr3_3:50057538-50057557 None:intergenic 60.0%
GGCGATGGAGATGGAGAGAG+TGG + chr3_3:50057603-50057622 None:intergenic 60.0%
CATCGCCGCCACAACCATGA+CGG - chr3_3:50057616-50057635 Msa0456490:three_prime_UTR 60.0%
CTCTATGCGCGTTAGGTCGC+GGG + chr3_3:50057660-50057679 None:intergenic 60.0%
GCTCTATGCGCGTTAGGTCG+CGG + chr3_3:50057661-50057680 None:intergenic 60.0%
CTAACGCGCATAGAGCGCGT+GGG - chr3_3:50057665-50057684 Msa0456490:three_prime_UTR 60.0%
GGAGCACACTCACACATCCG+CGG - chr3_3:50057686-50057705 Msa0456490:three_prime_UTR 60.0%
GACTTGGCCGACCATGCCTT+CGG + chr3_3:50057750-50057769 None:intergenic 60.0%
CGGCTTTACGAGCGGAGACT+TGG + chr3_3:50057766-50057785 None:intergenic 60.0%
CATCTGGAGGATAACGCCGG+CGG + chr3_3:50057786-50057805 None:intergenic 60.0%
TCAGATTGATCGTCCGGCGG+TGG - chr3_3:50058054-50058073 Msa0456490:CDS 60.0%
GCACTCGCTTCTCCCGATCT+CGG + chr3_3:50059193-50059212 None:intergenic 60.0%
GGTTGTGGCGGCGATGGAGA+TGG + chr3_3:50057612-50057631 None:intergenic 65.0%
CGTCATGGTTGTGGCGGCGA+TGG + chr3_3:50057618-50057637 None:intergenic 65.0%
CCACGCGCTCTATGCGCGTT+AGG + chr3_3:50057667-50057686 None:intergenic 65.0%
CCTAACGCGCATAGAGCGCG+TGG - chr3_3:50057664-50057683 Msa0456490:three_prime_UTR 65.0%
CACTCACACATCCGCGGCCT+CGG - chr3_3:50057692-50057711 Msa0456490:three_prime_UTR 65.0%
AAGAGTCGAGACCGAGGCCG+CGG + chr3_3:50057706-50057725 None:intergenic 65.0%
! GCCGTCTCCGAAGGCATGGT+CGG - chr3_3:50057740-50057759 Msa0456490:three_prime_UTR 65.0%
GCCGACCATGCCTTCGGAGA+CGG + chr3_3:50057744-50057763 None:intergenic 65.0%
GTCTCCGCTCGTAAAGCCGC+CGG - chr3_3:50057767-50057786 Msa0456490:three_prime_UTR 65.0%
AACGCCGGCGGCTTTACGAG+CGG + chr3_3:50057774-50057793 None:intergenic 65.0%
ATTGATCGTCCGGCGGTGGC+TGG - chr3_3:50058058-50058077 Msa0456490:CDS 65.0%
! GGTGGCCTTGGGTAGCATGG+TGG - chr3_3:50059119-50059138 Msa0456490:intron 65.0%
! GGAGACGGCGCGTGGCTCTA+AGG + chr3_3:50057729-50057748 None:intergenic 70.0%
ATGCCTTCGGAGACGGCGCG+TGG + chr3_3:50057737-50057756 None:intergenic 70.0%
ACGCGCCGTCTCCGAAGGCA+TGG - chr3_3:50057736-50057755 Msa0456490:three_prime_UTR 70.0%
GGCGAGGAGAACAGCGCGTC+CGG + chr3_3:50057828-50057847 None:intergenic 70.0%
GGACGCGCTGTTCTCCTCGC+CGG - chr3_3:50057827-50057846 Msa0456490:three_prime_UTR 70.0%
GTTCTCCTCGCCGGTCAGCC+AGG - chr3_3:50057836-50057855 Msa0456490:three_prime_UTR 70.0%
CAGTACCTGGCTGACCGGCG+AGG + chr3_3:50057844-50057863 None:intergenic 70.0%
CTCGCCGGTCAGCCAGGTAC+TGG - chr3_3:50057842-50057861 Msa0456490:three_prime_UTR 70.0%
GGCTGGAGCTGCGGCGAAGA+CGG - chr3_3:50058075-50058094 Msa0456490:CDS 70.0%
GCTGGAGCTGCGGCGAAGAC+GGG - chr3_3:50058076-50058095 Msa0456490:CDS 70.0%
CTGGAGCTGCGGCGAAGACG+GGG - chr3_3:50058077-50058096 Msa0456490:CDS 70.0%
GAGCCACGCGCCGTCTCCGA+AGG - chr3_3:50057731-50057750 Msa0456490:three_prime_UTR 75.0%
TCCGGCGGTGGCTGGAGCTG+CGG - chr3_3:50058066-50058085 Msa0456490:CDS 75.0%
! GCCGCAGCTCCAGCCACCGC+CGG + chr3_3:50058070-50058089 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 50057518 50061384 50057518 ID=Msa0456490;Name=Msa0456490
chr3_3 mRNA 50057518 50061384 50057518 ID=Msa0456490-mRNA-1;Parent=Msa0456490;Name=Msa0456490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=114|1|1|1|1|1|2|345|465
chr3_3 exon 50057518 50058511 50057518 ID=Msa0456490-mRNA-1:exon:9581;Parent=Msa0456490-mRNA-1
chr3_3 exon 50060522 50061384 50060522 ID=Msa0456490-mRNA-1:exon:9580;Parent=Msa0456490-mRNA-1
chr3_3 five_prime_UTR 50061271 50061384 50061271 ID=Msa0456490-mRNA-1:five_prime_utr;Parent=Msa0456490-mRNA-1
chr3_3 CDS 50060522 50061270 50060522 ID=Msa0456490-mRNA-1:cds;Parent=Msa0456490-mRNA-1
chr3_3 CDS 50057863 50058511 50057863 ID=Msa0456490-mRNA-1:cds;Parent=Msa0456490-mRNA-1
chr3_3 three_prime_UTR 50057518 50057862 50057518 ID=Msa0456490-mRNA-1:three_prime_utr;Parent=Msa0456490-mRNA-1
Gene Sequence

>Msa0456490

ATGACGGAGCTAAAACTTTCTGAAACCCGCGACCTAACGCGCATAGAGCGCGTGGGAGCACACTCACACATCCGCGGCCTCGGTCTCGACTCTTCCTTAGAGCCACGCGCCGTCTCCGAAGGCATGGTCGGCCAAGTCTCCGCTCGTAAAGCCGCCGGCGTTATCCTCCAGATGATCAAGGACGGTAAAATCGCCGGACGCGCTGTTCTCCTCGCCGGTCAGCCAGGTACTGGCAAAACCGCTATTGCAATGGGAATGGCGAAATCCCTCGGTCTTGAGACTCCTTTCGCCATGATTGCTGGTAGTGAGCTTTTCTCGCTGGAGATGTCGAAAACTGAAGCCTTAACACAAGCTTTTCGGAAGGCTATAGGAGTGAGAATTAAGGAGGAAACGGAGGTGATTGAAGGTGAGGTTGTTGAGGTTCAGATTGATCGTCCGGCGGTGGCTGGAGCTGCGGCGAAGACGGGGAAGTTGACGTTGAAGTCGACAGAGATGGAGACGGTTTATGATTTGGGGGCGAAGATGATTGAGGCGATTGGGAAGGAGAAAGTGACGAGTGGGGATGTGATTGCGATTGATAAAGCTTCAGGGAAGATTACGAAGCTTGGGAGATCATTTTCGCGGTCGAGGGATTTTGATGCTATGGGGCCTCAGGTGAAGTTTGTGCAGTGTCCTGATGGTGAGTTGCAGAAGAGGAAGGAGGTGGTGCATTGTGTTACTCTTCATGAGATTGATGTTATTAATAGCAGAACGCAGGGATTTCTGGCTCTTTTCACCGGTGACACAGGTGAAATTCGTGCAGAAGTCAGGGAACAAATTGACACGAAAGTGGCAGAGTGGAAAGAAGAAGGAAAGGCAGAGATTGTGCCTGGTGTCCTTTTCATTGATGAGGTACACATGCTTGACATAGAGTGCTTTTCATTCCTCAATCGGGCTCTGGAGAATGAAATGTCTCCCATTTTAGTTGTGGCTACCAACAGAGGCATCACAACTATTCGAGGCACAAATTACAAATCCCCACATGGGATTCCCATTGATCTACTTGATCGCCTACTCATCATCTCTACTCAACCTTACACTGAGGATGAAATTCGCAAAATTCTGGATATCAGATGCCAAGAGGAAGACGTAGACATGAGTGAAGGTGCAAAGCATTTGTTAACCAAAATAGGTGTAGAAACATCTCTACGCTATGCCATTCATCTAATCACAGCATCTGCTTTGGCATGCCAAAAGAGAAAGGGAAAGACAGTTGAATTGGATGATATTAATCGGGTTTACAATTTGTTTTTGGATGTCAAAAGATCGACACAGTACTTGATGGAATATCAAAGTCAATACATGTTCAGTGAAACAGGAGAAGTTGATGAAGACGACACCAATGCTATGGTCCAGTGA
Protein sequence

>Msa0456490

MTELKLSETRDLTRIERVGAHSHIRGLGLDSSLEPRAVSEGMVGQVSARKAAGVILQMIKDGKIAGRAVLLAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSELFSLEMSKTEALTQAFRKAIGVRIKEETEVIEGEVVEVQIDRPAVAGAAAKTGKLTLKSTEMETVYDLGAKMIEAIGKEKVTSGDVIAIDKASGKITKLGRSFSRSRDFDAMGPQVKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMSPILVVATNRGITTIRGTNYKSPHGIPIDLLDRLLIISTQPYTEDEIRKILDIRCQEEDVDMSEGAKHLLTKIGVETSLRYAIHLITASALACQKRKGKTVELDDINRVYNLFLDVKRSTQYLMEYQSQYMFSETGEVDEDDTNAMVQ*