Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403710 | XP_003600480.1 | 99.785 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 0.0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403710 | sp|Q9DE27|RUVB2_XENLA | 77.384 | 451 | 101 | 1 | 1 | 451 | 4 | 453 | 0.0 | 744 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403710 | G7J268 | 99.785 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 0.0 | 946 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0190240 | Msa0403710 | 0.819575 | 1.080628e-52 | -8.615850e-47 |
| Msa0232420 | Msa0403710 | 0.809759 | 1.614334e-50 | -8.615850e-47 |
| Msa0403710 | Msa0456490 | 0.931079 | 6.413568e-94 | -8.615850e-47 |
| Msa0403710 | Msa1060230 | 0.801584 | 8.404862e-49 | -8.615850e-47 |
| Msa0403710 | Msa1451140 | 0.818074 | 2.369664e-52 | -8.615850e-47 |
| Msa0272070 | Msa0403710 | 0.806869 | 6.672183e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403710 | MtrunA17_Chr3g0103451 | 99.785 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 0.0 | 946 |
| Msa0403710 | MtrunA17_Chr3g0135461 | 44.206 | 466 | 233 | 7 | 1 | 448 | 1 | 457 | 1.52e-127 | 377 |
| Msa0403710 | MtrunA17_Chr6g0459171 | 35.743 | 249 | 113 | 5 | 4 | 237 | 1 | 217 | 1.31e-37 | 137 |
| Msa0403710 | MtrunA17_Chr6g0459181 | 36.406 | 217 | 96 | 3 | 239 | 448 | 27 | 208 | 1.57e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0403710 | AT5G67630.1 | 85.867 | 467 | 62 | 1 | 1 | 463 | 1 | 467 | 0.0 | 805 |
| Msa0403710 | AT3G49830.1 | 79.601 | 451 | 91 | 1 | 1 | 450 | 1 | 451 | 0.0 | 748 |
| Msa0403710 | AT5G22330.1 | 43.791 | 459 | 245 | 5 | 1 | 448 | 1 | 457 | 4.04e-126 | 374 |
Find 151 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGAACGCAGGGATTTC+TGG | 0.168140 | 3_2:+34267402 | Msa0403710:intron |
| CTGTCTTTCCCTTTCTCTTT+TGG | 0.168943 | 3_2:-34267888 | None:intergenic |
| GCACATGACGAATAATAATT+TGG | 0.169713 | 3_2:-34268370 | None:intergenic |
| AGATGTTTCTACACCTATTT+TGG | 0.215981 | 3_2:-34267821 | None:intergenic |
| GTTGGTAGCCACAACTAAAA+TGG | 0.256258 | 3_2:-34267614 | None:intergenic |
| AAGCATTTGTTAACCAAAAT+AGG | 0.257783 | 3_2:+34267808 | Msa0403710:CDS |
| GGATGAAATTCGCAAAATTC+TGG | 0.273264 | 3_2:+34267741 | Msa0403710:CDS |
| ATGGAGACGGTTTATGATTT+GGG | 0.291625 | 3_2:+34265136 | Msa0403710:CDS |
| GGCTATAGGAGTGAGAATTA+AGG | 0.320370 | 3_2:+34265006 | Msa0403710:CDS |
| CACATGACGAATAATAATTT+GGG | 0.321897 | 3_2:-34268369 | None:intergenic |
| GTGAAATTCGTGCAGAAGTC+AGG | 0.327601 | 3_2:+34267446 | Msa0403710:CDS |
| GATGGAGACGGTTTATGATT+TGG | 0.333382 | 3_2:+34265135 | Msa0403710:CDS |
| TTGAATTGGATGATATTAAT+CGG | 0.343045 | 3_2:+34267911 | Msa0403710:CDS |
| AAAGGGAAAGACAGTTGAAT+TGG | 0.347244 | 3_2:+34267897 | Msa0403710:CDS |
| CCCAAGCTTCGTAATCTTCC+CGG | 0.349144 | 3_2:-34265230 | None:intergenic |
| CAATACATGTTCAGTGAAAC+AGG | 0.377429 | 3_2:+34267994 | Msa0403710:CDS |
| CTCTATGCGCGTTAGGTCGC+GGG | 0.381377 | 3_2:-34264669 | None:intergenic |
| ATTGATCGTCCGGCGGTGGC+TGG | 0.381879 | 3_2:+34265070 | Msa0403710:CDS |
| GGAGACGGCGCGTGGCTCTA+AGG | 0.387209 | 3_2:-34264738 | None:intergenic |
| ATTGCGATTGATAAAGCTTC+CGG | 0.389772 | 3_2:+34265211 | Msa0403710:CDS |
| CGAATTTCATCCTCAGTGTA+AGG | 0.394218 | 3_2:-34267730 | None:intergenic |
| ACTCCTTTCGCCATGATTGC+TGG | 0.398150 | 3_2:+34264923 | Msa0403710:CDS |
| GGCTGGAGCTGCGGCGAAGA+CGG | 0.399233 | 3_2:+34265087 | Msa0403710:CDS |
| GGCGAGGAGAACAGCGCGTC+CGG | 0.402500 | 3_2:-34264837 | None:intergenic |
| GCTGGAGCTGCGGCGAAGAC+GGG | 0.407291 | 3_2:+34265088 | Msa0403710:CDS |
| TTCATTCCTCAATCGGGCTC+TGG | 0.407946 | 3_2:+34267576 | Msa0403710:CDS |
| CAGCAATTTATTTCATGATC+CGG | 0.412707 | 3_2:+34268119 | Msa0403710:three_prime_UTR |
| TCCGGGAAGATTACGAAGCT+TGG | 0.423666 | 3_2:+34265229 | Msa0403710:CDS |
| CCACGCGCTCTATGCGCGTT+AGG | 0.424297 | 3_2:-34264676 | None:intergenic |
| AAGATCGACACAGTACTTGA+TGG | 0.429777 | 3_2:+34267960 | Msa0403710:CDS |
| TCTAATCACAGCATCTGCTT+TGG | 0.431645 | 3_2:+34267861 | Msa0403710:CDS |
| GCTCTATGCGCGTTAGGTCG+CGG | 0.432519 | 3_2:-34264670 | None:intergenic |
| CGGCTTTACGAGCGGAGACT+TGG | 0.439804 | 3_2:-34264775 | None:intergenic |
| CGAAGATGATTGAGGCGATT+GGG | 0.440792 | 3_2:+34265161 | Msa0403710:CDS |
| CGTCATGGTTGTGGCGGCGA+TGG | 0.441200 | 3_2:-34264627 | None:intergenic |
| CTCGCCGGTCAGCCAGGTAC+TGG | 0.441713 | 3_2:+34264854 | Msa0403710:CDS |
| CTCTTCTGCAACTCACCATC+AGG | 0.442493 | 3_2:-34265316 | None:intergenic |
| TAGATATTGCAATACAACTT+TGG | 0.443860 | 3_2:-34268191 | None:intergenic |
| GCGAAGATGATTGAGGCGAT+TGG | 0.445428 | 3_2:+34265160 | Msa0403710:CDS |
| GTTCTCCTCGCCGGTCAGCC+AGG | 0.456290 | 3_2:+34264848 | Msa0403710:CDS |
| CACTCACACATCCGCGGCCT+CGG | 0.458095 | 3_2:+34264704 | Msa0403710:CDS |
| TGAATTGGATGATATTAATC+GGG | 0.459515 | 3_2:+34267912 | Msa0403710:CDS |
| TTGCGATTGATAAAGCTTCC+GGG | 0.460880 | 3_2:+34265212 | Msa0403710:CDS |
| CCGGGAAGATTACGAAGCTT+GGG | 0.462304 | 3_2:+34265230 | Msa0403710:CDS |
| AGTGAGAATTAAGGAGGAAA+CGG | 0.465530 | 3_2:+34265015 | Msa0403710:CDS |
| GCCGACCATGCCTTCGGAGA+CGG | 0.465787 | 3_2:-34264753 | None:intergenic |
| GAGGAAACGGAGGTGATTGA+AGG | 0.467645 | 3_2:+34265028 | Msa0403710:CDS |
| GTTGAGTAGAGATGATGAGT+AGG | 0.468747 | 3_2:-34267708 | None:intergenic |
| GGCAAAACCGCTATTGCAAT+GGG | 0.477742 | 3_2:+34264875 | Msa0403710:CDS |
| CATTCTCCAGAGCCCGATTG+AGG | 0.480580 | 3_2:-34267582 | None:intergenic |
| GTGTGCGCGCTCTCTACTAC+AGG | 0.480745 | 3_2:-34264547 | None:intergenic |
| CTTCCGAAAAGCTTGTGTTA+AGG | 0.481406 | 3_2:-34264984 | None:intergenic |
| TTGGTAGCCACAACTAAAAT+GGG | 0.483901 | 3_2:-34267613 | None:intergenic |
| GACTTGGCCGACCATGCCTT+CGG | 0.485767 | 3_2:-34264759 | None:intergenic |
| CTGAGGTGAATGAATTTCAC+TGG | 0.488607 | 3_2:-34268050 | None:intergenic |
| GTGGCAGAGTGGAAAGAAGA+AGG | 0.488801 | 3_2:+34267487 | Msa0403710:CDS |
| CGCCATTCCCATTGCAATAG+CGG | 0.489903 | 3_2:-34264882 | None:intergenic |
| TAGGCGATCAAGTAGATCAA+TGG | 0.491544 | 3_2:-34267689 | None:intergenic |
| AAGCTCACTACCAGCAATCA+TGG | 0.493183 | 3_2:-34264933 | None:intergenic |
| AGATTGATGTTATTAATAGC+AGG | 0.494305 | 3_2:+34265371 | Msa0403710:CDS |
| GACGTTGAAGTCGACGGAGA+TGG | 0.495632 | 3_2:+34265117 | Msa0403710:CDS |
| ACGAATTTCACCCGTGTCAC+CGG | 0.506863 | 3_2:-34267434 | None:intergenic |
| TGGCAAAACCGCTATTGCAA+TGG | 0.507380 | 3_2:+34264874 | Msa0403710:CDS |
| GGAAGGAGAAAGTGACGAGT+GGG | 0.509018 | 3_2:+34265182 | Msa0403710:CDS |
| AGGCGATCAAGTAGATCAAT+GGG | 0.510466 | 3_2:-34267688 | None:intergenic |
| TCATGTCTACGTCTTCCTCT+TGG | 0.512507 | 3_2:-34267774 | None:intergenic |
| GCCGCAGCTCCAGCCACCGC+CGG | 0.514286 | 3_2:-34265079 | None:intergenic |
| TCAGATTGATCGTCCGGCGG+TGG | 0.514313 | 3_2:+34265066 | Msa0403710:CDS |
| TGAGGTTCAGATTGATCGTC+CGG | 0.515205 | 3_2:+34265060 | Msa0403710:CDS |
| AAGAGTCGAGACCGAGGCCG+CGG | 0.517810 | 3_2:-34264715 | None:intergenic |
| TTTGCCAGTACCTGGCTGAC+CGG | 0.518638 | 3_2:-34264858 | None:intergenic |
| GGGAAGGAGAAAGTGACGAG+TGG | 0.523320 | 3_2:+34265181 | Msa0403710:CDS |
| TGTGTACCTCATCAATGAAA+AGG | 0.533089 | 3_2:-34267534 | None:intergenic |
| TCGTGTTAATTTCAGAACGC+AGG | 0.535848 | 3_2:+34267393 | Msa0403710:intron |
| TCCGGCGGTGGCTGGAGCTG+CGG | 0.535910 | 3_2:+34265078 | Msa0403710:CDS |
| TTTGGCATGCCAAAAGAGAA+AGG | 0.542916 | 3_2:+34267879 | Msa0403710:CDS |
| GAGCCACGCGCCGTCTCCGA+AGG | 0.543555 | 3_2:+34264743 | Msa0403710:CDS |
| TGGAGACGGTTTATGATTTG+GGG | 0.546299 | 3_2:+34265137 | Msa0403710:CDS |
| TTCACTAGCTATCAATAGAG+TGG | 0.549034 | 3_2:+34268320 | Msa0403710:three_prime_UTR |
| GGAAAGGCAGAGATTGTGCC+TGG | 0.550110 | 3_2:+34267508 | Msa0403710:CDS |
| GGTTGTGGCGGCGATGGAGA+TGG | 0.555807 | 3_2:-34264621 | None:intergenic |
| AACCGCTATTGCAATGGGAA+TGG | 0.556997 | 3_2:+34264880 | Msa0403710:CDS |
| AACGGAGGTGATTGAAGGTG+AGG | 0.557415 | 3_2:+34265033 | Msa0403710:CDS |
| GGACGCGCTGTTCTCCTCGC+CGG | 0.560307 | 3_2:+34264839 | Msa0403710:CDS |
| CTGGAGCTGCGGCGAAGACG+GGG | 0.560612 | 3_2:+34265089 | Msa0403710:CDS |
| TATAGGAGTGAGAATTAAGG+AGG | 0.560876 | 3_2:+34265009 | Msa0403710:CDS |
| TTGGCATGCCAAAAGAGAAA+GGG | 0.561252 | 3_2:+34267880 | Msa0403710:CDS |
| AAGTTTGTGCAGTGTCCTGA+TGG | 0.565334 | 3_2:+34265301 | Msa0403710:CDS |
| ATGGGAATGGCGAAATCCCT+CGG | 0.565356 | 3_2:+34264893 | Msa0403710:CDS |
| CGTGTTAATTTCAGAACGCA+GGG | 0.565361 | 3_2:+34267394 | Msa0403710:intron |
| GAAGTCGACGGAGATGGAGA+CGG | 0.565872 | 3_2:+34265123 | Msa0403710:CDS |
| GCCGTCTCCGAAGGCATGGT+CGG | 0.566014 | 3_2:+34264752 | Msa0403710:CDS |
| CCTAACGCGCATAGAGCGCG+TGG | 0.566275 | 3_2:+34264676 | Msa0403710:CDS |
| AGATGCTGTGATTAGATGAA+TGG | 0.566370 | 3_2:-34267854 | None:intergenic |
| CAATTTATTTCATGATCCGG+TGG | 0.569467 | 3_2:+34268122 | Msa0403710:three_prime_UTR |
| ACGCGCCGTCTCCGAAGGCA+TGG | 0.570079 | 3_2:+34264748 | Msa0403710:CDS |
| GTCTCCGCTCGTAAAGCCGC+CGG | 0.573288 | 3_2:+34264779 | Msa0403710:CDS |
| TGGTGAGTTGCAGAAGAGGA+AGG | 0.574351 | 3_2:+34265321 | Msa0403710:CDS |
| GATTGAAGGTGAGGTTGTTG+AGG | 0.575785 | 3_2:+34265042 | Msa0403710:CDS |
| ATGCCTTCGGAGACGGCGCG+TGG | 0.577386 | 3_2:-34264746 | None:intergenic |
| AGAGGCATCACAACTATTCG+AGG | 0.577787 | 3_2:+34267637 | Msa0403710:CDS |
| ATTTCACTGGACCATAGCAT+TGG | 0.578908 | 3_2:-34268037 | None:intergenic |
| CGTTATCCTCCAGATGATCA+AGG | 0.584244 | 3_2:+34264802 | Msa0403710:CDS |
| TACCGTCCTTGATCATCTGG+AGG | 0.584863 | 3_2:-34264808 | None:intergenic |
| AATTTATTTCATGATCCGGT+GGG | 0.586831 | 3_2:+34268123 | Msa0403710:three_prime_UTR |
| ATCAAGGACGGTAAAATCGC+CGG | 0.587643 | 3_2:+34264818 | Msa0403710:CDS |
| TGAAATTCGTGCAGAAGTCA+GGG | 0.588620 | 3_2:+34267447 | Msa0403710:CDS |
| AATAGTTGTGATGCCTCTGT+TGG | 0.588977 | 3_2:-34267632 | None:intergenic |
| GGAACAAATTGACACGAAAG+TGG | 0.589018 | 3_2:+34267468 | Msa0403710:CDS |
| AGAGTGGAAAGAAGAAGGAA+AGG | 0.593025 | 3_2:+34267492 | Msa0403710:CDS |
| GAGAATTAAGGAGGAAACGG+AGG | 0.595347 | 3_2:+34265018 | Msa0403710:CDS |
| TGAGTTGCAGAAGAGGAAGG+AGG | 0.595760 | 3_2:+34265324 | Msa0403710:CDS |
| ACAAATTACAAATCCCCACA+TGG | 0.598468 | 3_2:+34267661 | Msa0403710:CDS |
| AACGCCGGCGGCTTTACGAG+CGG | 0.602307 | 3_2:-34264783 | None:intergenic |
| ATCTACAGCATTCACGTGAG+AGG | 0.604187 | 3_2:+34268209 | Msa0403710:three_prime_UTR |
| GATGATTGAGGCGATTGGGA+AGG | 0.606012 | 3_2:+34265165 | Msa0403710:CDS |
| GGAGACGGTTTATGATTTGG+GGG | 0.606487 | 3_2:+34265138 | Msa0403710:CDS |
| TGAAGACGACACCAATGCTA+TGG | 0.611055 | 3_2:+34268026 | Msa0403710:CDS |
| CTGATGGTGAGTTGCAGAAG+AGG | 0.612555 | 3_2:+34265317 | Msa0403710:CDS |
| GTTGCAGAAGAGGAAGGAGG+TGG | 0.615066 | 3_2:+34265327 | Msa0403710:CDS |
| GAAGGAGAAAGTGACGAGTG+GGG | 0.620381 | 3_2:+34265183 | Msa0403710:CDS |
| CTACCAGCAATCATGGCGAA+AGG | 0.622667 | 3_2:-34264926 | None:intergenic |
| AATTACAAAGTCTCAAACTG+AGG | 0.624855 | 3_2:-34268067 | None:intergenic |
| GATCAATGGGAATCCCATGT+GGG | 0.625545 | 3_2:-34267675 | None:intergenic |
| TTAGTTGTGGCTACCAACAG+AGG | 0.628149 | 3_2:+34267619 | Msa0403710:CDS |
| GGCGATGGAGATGGAGAGAG+TGG | 0.628869 | 3_2:-34264612 | None:intergenic |
| ACATGACGAATAATAATTTG+GGG | 0.629067 | 3_2:-34268368 | None:intergenic |
| CATCGCCGCCACAACCATGA+CGG | 0.632511 | 3_2:+34264628 | Msa0403710:exon |
| AATTAAGTGCAATAACCCAC+CGG | 0.640135 | 3_2:-34268138 | None:intergenic |
| TAGCTCCGTCATGGTTGTGG+CGG | 0.643085 | 3_2:-34264633 | None:intergenic |
| GAAAGGAGTCTCAAGACCGA+GGG | 0.644534 | 3_2:-34264909 | None:intergenic |
| CAGTACCTGGCTGACCGGCG+AGG | 0.645488 | 3_2:-34264853 | None:intergenic |
| CACTGCACAAACTTCACCTG+AGG | 0.646673 | 3_2:-34265292 | None:intergenic |
| CGAAAGGAGTCTCAAGACCG+AGG | 0.650449 | 3_2:-34264910 | None:intergenic |
| TTGACACGAAAGTGGCAGAG+TGG | 0.654228 | 3_2:+34267476 | Msa0403710:CDS |
| GAAGTTGACGTTGAAGTCGA+CGG | 0.656423 | 3_2:+34265111 | Msa0403710:CDS |
| ATCCTCCAGATGATCAAGGA+CGG | 0.657130 | 3_2:+34264806 | Msa0403710:CDS |
| AGATCAATGGGAATCCCATG+TGG | 0.657627 | 3_2:-34267676 | None:intergenic |
| TCATCAATGAAAAGGACACC+AGG | 0.662622 | 3_2:-34267526 | None:intergenic |
| GATCATCTGGAGGATAACGC+CGG | 0.668449 | 3_2:-34264798 | None:intergenic |
| GAAGACGTAGACATGAGTGA+AGG | 0.670929 | 3_2:+34267781 | Msa0403710:CDS |
| ATCAATGGGAATCCCATGTG+GGG | 0.673789 | 3_2:-34267674 | None:intergenic |
| CAAATTACAAATCCCCACAT+GGG | 0.679587 | 3_2:+34267662 | Msa0403710:CDS |
| CTAACGCGCATAGAGCGCGT+GGG | 0.688219 | 3_2:+34264677 | Msa0403710:CDS |
| TCTGGATATCAGATGCCAAG+AGG | 0.689336 | 3_2:+34267759 | Msa0403710:CDS |
| CTAAGGAAGAGTCGAGACCG+AGG | 0.697389 | 3_2:-34264721 | None:intergenic |
| GGAGCACACTCACACATCCG+CGG | 0.702267 | 3_2:+34264698 | Msa0403710:CDS |
| CATGACGAATAATAATTTGG+GGG | 0.707219 | 3_2:-34268367 | None:intergenic |
| GGTTCAGATTGATCGTCCGG+CGG | 0.711952 | 3_2:+34265063 | Msa0403710:CDS |
| CATCTGGAGGATAACGCCGG+CGG | 0.729769 | 3_2:-34264795 | None:intergenic |
| CTCTACTCAACCTTACACTG+AGG | 0.741639 | 3_2:+34267720 | Msa0403710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATGTTGTTTTTACAAA+TGG | - | chr3_2:34265525-34265544 | None:intergenic | 15.0% |
| !! | ATATGAAATAAAAACTATAC+AGG | - | chr3_2:34265870-34265889 | None:intergenic | 15.0% |
| !!! | TTCAAAAAAAAAACATTTTG+GGG | - | chr3_2:34266351-34266370 | None:intergenic | 15.0% |
| !!! | GTTCAAAAAAAAAACATTTT+GGG | - | chr3_2:34266352-34266371 | None:intergenic | 15.0% |
| !!! | TGTTCAAAAAAAAAACATTT+TGG | - | chr3_2:34266353-34266372 | None:intergenic | 15.0% |
| !! | AAATGTTAAGTCATATAAAA+AGG | + | chr3_2:34266385-34266404 | Msa0403710:intron | 15.0% |
| !!! | TGTTAATTAGCTTTATATTA+AGG | + | chr3_2:34266436-34266455 | Msa0403710:intron | 15.0% |
| !! | TTAAAAAAAAACTCATCATA+TGG | - | chr3_2:34266854-34266873 | None:intergenic | 15.0% |
| !!! | TTGAAGTTATGTTTGTTTTT+AGG | + | chr3_2:34265465-34265484 | Msa0403710:intron | 20.0% |
| !!! | TGAAGTTATGTTTGTTTTTA+GGG | + | chr3_2:34265466-34265485 | Msa0403710:intron | 20.0% |
| !!! | TTGATCAGTTCTAAAAAATT+AGG | + | chr3_2:34265977-34265996 | Msa0403710:intron | 20.0% |
| !!! | TAAGGTAATGTTTGTTTTTA+TGG | + | chr3_2:34266454-34266473 | Msa0403710:intron | 20.0% |
| !!! | ACTAATCTAAAACAAATCAT+TGG | - | chr3_2:34266810-34266829 | None:intergenic | 20.0% |
| !!! | TATTAAATTTTCCAACTTGT+TGG | + | chr3_2:34267302-34267321 | Msa0403710:intron | 20.0% |
| !! | TTGAATTGGATGATATTAAT+CGG | + | chr3_2:34267911-34267930 | Msa0403710:CDS | 20.0% |
| ! | AGATTGATGTTATTAATAGC+AGG | + | chr3_2:34265371-34265390 | Msa0403710:CDS | 25.0% |
| ! | TTGAAATTGAAAACAGCTTA+TGG | + | chr3_2:34265685-34265704 | Msa0403710:intron | 25.0% |
| ! | TCAAATAAGTGAATCTGAAT+AGG | + | chr3_2:34265756-34265775 | Msa0403710:intron | 25.0% |
| ! | CAATACTTCTCAATTGTATT+TGG | - | chr3_2:34265932-34265951 | None:intergenic | 25.0% |
| !!! | AAATTAGGTTGTTTCTTTGA+TGG | + | chr3_2:34265992-34266011 | Msa0403710:intron | 25.0% |
| !! | TTTTTGTGATGTGATCATTT+TGG | + | chr3_2:34266170-34266189 | Msa0403710:intron | 25.0% |
| !!! | AAAAACATTTTGGGGAAAAA+GGG | - | chr3_2:34266343-34266362 | None:intergenic | 25.0% |
| !!! | AAAAAACATTTTGGGGAAAA+AGG | - | chr3_2:34266344-34266363 | None:intergenic | 25.0% |
| ! | ATTATCAATGATGCATATGT+AGG | + | chr3_2:34266489-34266508 | Msa0403710:intron | 25.0% |
| ! | CTTCAGAAAAGAGATATTAT+GGG | - | chr3_2:34266721-34266740 | None:intergenic | 25.0% |
| ! | ACTTCAGAAAAGAGATATTA+TGG | - | chr3_2:34266722-34266741 | None:intergenic | 25.0% |
| ! | GAAGTTATAGTTTGAGTAAT+TGG | + | chr3_2:34265798-34265817 | Msa0403710:intron | 25.0% |
| ! | ATAGATCTGTGTCAAAAATT+TGG | + | chr3_2:34266897-34266916 | Msa0403710:intron | 25.0% |
| !!! | GAATCATTTTAGAGAGAAAA+GGG | - | chr3_2:34267264-34267283 | None:intergenic | 25.0% |
| !! | AATAGAAGTTTTCATCTGTA+AGG | - | chr3_2:34267286-34267305 | None:intergenic | 25.0% |
| !! | AAGCATTTGTTAACCAAAAT+AGG | + | chr3_2:34267808-34267827 | Msa0403710:CDS | 25.0% |
| ! | TGAATTGGATGATATTAATC+GGG | + | chr3_2:34267912-34267931 | Msa0403710:CDS | 25.0% |
| ! | TAGATATTGCAATACAACTT+TGG | - | chr3_2:34268194-34268213 | None:intergenic | 25.0% |
| ! | ACATGACGAATAATAATTTG+GGG | - | chr3_2:34268371-34268390 | None:intergenic | 25.0% |
| ! | CACATGACGAATAATAATTT+GGG | - | chr3_2:34268372-34268391 | None:intergenic | 25.0% |
| ! | TTTGAGAACGAAAGGTTTTA+GGG | - | chr3_2:34264589-34264608 | None:intergenic | 30.0% |
| !! | TTTTGAGAACGAAAGGTTTT+AGG | - | chr3_2:34264590-34264609 | None:intergenic | 30.0% |
| CTAATCCAAAACAAATGATG+TGG | - | chr3_2:34265842-34265861 | None:intergenic | 30.0% | |
| CTAAATCGTCAAACAAAACT+TGG | - | chr3_2:34266068-34266087 | None:intergenic | 30.0% | |
| ACTGTTTCCATAAGTTATCT+TGG | + | chr3_2:34266569-34266588 | Msa0403710:intron | 30.0% | |
| CTAGTAGAAAAGCTGAAATA+AGG | + | chr3_2:34266682-34266701 | Msa0403710:intron | 30.0% | |
| TGAAATAAGGCAATCTAAAC+TGG | + | chr3_2:34266695-34266714 | Msa0403710:intron | 30.0% | |
| ! | TTAACTGTGTGACTTTGAAA+TGG | + | chr3_2:34266870-34266889 | Msa0403710:intron | 30.0% |
| !! | TAACTGTGTGACTTTGAAAT+GGG | + | chr3_2:34266871-34266890 | Msa0403710:intron | 30.0% |
| !! | TGTTATTCAAGTTTTCTGTG+AGG | + | chr3_2:34266978-34266997 | Msa0403710:intron | 30.0% |
| !!! | CATGATGCTTTATTTTTGTG+AGG | + | chr3_2:34267088-34267107 | Msa0403710:intron | 30.0% |
| !! | GGAATCATTTTAGAGAGAAA+AGG | - | chr3_2:34267265-34267284 | None:intergenic | 30.0% |
| CAACTTGTAACACAAGAAAA+AGG | - | chr3_2:34267347-34267366 | None:intergenic | 30.0% | |
| !! | AGATGTTTCTACACCTATTT+TGG | - | chr3_2:34267824-34267843 | None:intergenic | 30.0% |
| !! | TCGGGTTTACAATTTGTTTT+TGG | + | chr3_2:34267930-34267949 | Msa0403710:CDS | 30.0% |
| AATTACAAAGTCTCAAACTG+AGG | - | chr3_2:34268070-34268089 | None:intergenic | 30.0% | |
| CAGCAATTTATTTCATGATC+CGG | + | chr3_2:34268119-34268138 | Msa0403710:three_prime_UTR | 30.0% | |
| AATTTATTTCATGATCCGGT+GGG | + | chr3_2:34268123-34268142 | Msa0403710:three_prime_UTR | 30.0% | |
| ! | ATACAACTTTGGAAAAACAG+CGG | - | chr3_2:34268183-34268202 | None:intergenic | 30.0% |
| CATGACGAATAATAATTTGG+GGG | - | chr3_2:34268370-34268389 | None:intergenic | 30.0% | |
| GCACATGACGAATAATAATT+TGG | - | chr3_2:34268373-34268392 | None:intergenic | 30.0% | |
| !!! | CGAAAGGTTTTAGGGTTTTA+GGG | - | chr3_2:34264581-34264600 | None:intergenic | 35.0% |
| !!! | ACGAAAGGTTTTAGGGTTTT+AGG | - | chr3_2:34264582-34264601 | None:intergenic | 35.0% |
| ! | AAGCCTTAACACAAGCTTTT+CGG | + | chr3_2:34264981-34265000 | Msa0403710:CDS | 35.0% |
| TATAGGAGTGAGAATTAAGG+AGG | + | chr3_2:34265009-34265028 | Msa0403710:CDS | 35.0% | |
| AGTGAGAATTAAGGAGGAAA+CGG | + | chr3_2:34265015-34265034 | Msa0403710:CDS | 35.0% | |
| ATGGAGACGGTTTATGATTT+GGG | + | chr3_2:34265136-34265155 | Msa0403710:CDS | 35.0% | |
| ATTGCGATTGATAAAGCTTC+CGG | + | chr3_2:34265211-34265230 | Msa0403710:CDS | 35.0% | |
| AATGGTACCTACATAAACCA+TGG | - | chr3_2:34265507-34265526 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATAC+CGG | + | chr3_2:34265644-34265663 | Msa0403710:intron | 35.0% |
| ACATATTTCCATTAGCTCAC+CGG | - | chr3_2:34265666-34265685 | None:intergenic | 35.0% | |
| TTGCATAAGTTCTCCCATAT+AGG | + | chr3_2:34265724-34265743 | Msa0403710:intron | 35.0% | |
| TTGAGCTTATGAGCCTATAT+GGG | - | chr3_2:34265740-34265759 | None:intergenic | 35.0% | |
| TTTGAGCTTATGAGCCTATA+TGG | - | chr3_2:34265741-34265760 | None:intergenic | 35.0% | |
| ! | AGAAGCCACATCATTTGTTT+TGG | + | chr3_2:34265834-34265853 | Msa0403710:intron | 35.0% |
| ! | TGTTGTGTGACTTTAGAAAC+TGG | + | chr3_2:34265950-34265969 | Msa0403710:intron | 35.0% |
| !!! | TTGATGGTTTTGAAGATTCC+TGG | + | chr3_2:34266008-34266027 | Msa0403710:intron | 35.0% |
| GAACATTGCAATACAACTCT+AGG | - | chr3_2:34266044-34266063 | None:intergenic | 35.0% | |
| TTATACAGACTTGCCAATGA+TGG | + | chr3_2:34266124-34266143 | Msa0403710:intron | 35.0% | |
| TATCTCGTGTTTATCCAAAC+AGG | - | chr3_2:34266516-34266535 | None:intergenic | 35.0% | |
| GTTTCCATAAGTTATCTTGG+AGG | + | chr3_2:34266572-34266591 | Msa0403710:intron | 35.0% | |
| AAGTCCTCCAAGATAACTTA+TGG | - | chr3_2:34266579-34266598 | None:intergenic | 35.0% | |
| ! | TTTTTGTGAGGCGATCATTT+TGG | + | chr3_2:34267100-34267119 | Msa0403710:intron | 35.0% |
| AGCTAAACAAACCAACAAGT+TGG | - | chr3_2:34267316-34267335 | None:intergenic | 35.0% | |
| CTTGTAACACAAGAAAAAGG+AGG | - | chr3_2:34267344-34267363 | None:intergenic | 35.0% | |
| TTGTGTTACAAGTTGCTTCT+TGG | + | chr3_2:34267352-34267371 | Msa0403710:intron | 35.0% | |
| TGTGTACCTCATCAATGAAA+AGG | - | chr3_2:34267537-34267556 | None:intergenic | 35.0% | |
| ! | AGTGCTTTTCATTCCTCAAT+CGG | + | chr3_2:34267569-34267588 | Msa0403710:CDS | 35.0% |
| !!! | AATGTCTCCCATTTTAGTTG+TGG | + | chr3_2:34267606-34267625 | Msa0403710:CDS | 35.0% |
| ! | TTGGTAGCCACAACTAAAAT+GGG | - | chr3_2:34267616-34267635 | None:intergenic | 35.0% |
| ACAAATTACAAATCCCCACA+TGG | + | chr3_2:34267661-34267680 | Msa0403710:CDS | 35.0% | |
| CAAATTACAAATCCCCACAT+GGG | + | chr3_2:34267662-34267681 | Msa0403710:CDS | 35.0% | |
| GGATGAAATTCGCAAAATTC+TGG | + | chr3_2:34267741-34267760 | Msa0403710:CDS | 35.0% | |
| AGATGCTGTGATTAGATGAA+TGG | - | chr3_2:34267857-34267876 | None:intergenic | 35.0% | |
| AAAGGGAAAGACAGTTGAAT+TGG | + | chr3_2:34267897-34267916 | Msa0403710:CDS | 35.0% | |
| CAATACATGTTCAGTGAAAC+AGG | + | chr3_2:34267994-34268013 | Msa0403710:CDS | 35.0% | |
| CAATTTATTTCATGATCCGG+TGG | + | chr3_2:34268122-34268141 | Msa0403710:three_prime_UTR | 35.0% | |
| AATTAAGTGCAATAACCCAC+CGG | - | chr3_2:34268141-34268160 | None:intergenic | 35.0% | |
| ! | TACAACTTTGGAAAAACAGC+GGG | - | chr3_2:34268182-34268201 | None:intergenic | 35.0% |
| TTCACTAGCTATCAATAGAG+TGG | + | chr3_2:34268320-34268339 | Msa0403710:three_prime_UTR | 35.0% | |
| !!! | AGTGGAGTTTTGAGAACGAA+AGG | - | chr3_2:34264597-34264616 | None:intergenic | 40.0% |
| !!! | AGAAAGTTTTAGCTCCGTCA+TGG | - | chr3_2:34264645-34264664 | None:intergenic | 40.0% |
| ! | TTTTACCGTCCTTGATCATC+TGG | - | chr3_2:34264814-34264833 | None:intergenic | 40.0% |
| CTTCCGAAAAGCTTGTGTTA+AGG | - | chr3_2:34264987-34265006 | None:intergenic | 40.0% | |
| ! | CTTAACACAAGCTTTTCGGA+AGG | + | chr3_2:34264985-34265004 | Msa0403710:CDS | 40.0% |
| GGCTATAGGAGTGAGAATTA+AGG | + | chr3_2:34265006-34265025 | Msa0403710:CDS | 40.0% | |
| GATGGAGACGGTTTATGATT+TGG | + | chr3_2:34265135-34265154 | Msa0403710:CDS | 40.0% | |
| TGGAGACGGTTTATGATTTG+GGG | + | chr3_2:34265137-34265156 | Msa0403710:CDS | 40.0% | |
| TTGCGATTGATAAAGCTTCC+GGG | + | chr3_2:34265212-34265231 | Msa0403710:CDS | 40.0% | |
| !! | TCGAGGGATTTTGATGCTAT+GGG | + | chr3_2:34265268-34265287 | Msa0403710:CDS | 40.0% |
| !! | GGTAAATGAAAGTGCTTCCA+TGG | + | chr3_2:34265487-34265506 | Msa0403710:intron | 40.0% |
| AGTGCTTCCATGGTTTATGT+AGG | + | chr3_2:34265497-34265516 | Msa0403710:intron | 40.0% | |
| ATGGGAGAACTTATGCAAAC+AGG | - | chr3_2:34265722-34265741 | None:intergenic | 40.0% | |
| ! | TGTGTGACTTTAGAAACTGG+TGG | + | chr3_2:34265953-34265972 | Msa0403710:intron | 40.0% |
| ! | ACTCTAGGAGCAAATTAACC+AGG | - | chr3_2:34266029-34266048 | None:intergenic | 40.0% |
| ATGCATATGTAGGTCCTGTT+TGG | + | chr3_2:34266499-34266518 | Msa0403710:intron | 40.0% | |
| AAGTTATCTTGGAGGACTTC+TGG | + | chr3_2:34266580-34266599 | Msa0403710:intron | 40.0% | |
| ATTGGCTGTAATCTAGCAAG+TGG | + | chr3_2:34266755-34266774 | Msa0403710:intron | 40.0% | |
| ACGCTAAGAGCAAACTAATC+AGG | - | chr3_2:34266948-34266967 | None:intergenic | 40.0% | |
| ATCCCAATCTCGACGAAAAA+GGG | - | chr3_2:34267136-34267155 | None:intergenic | 40.0% | |
| TATCCCAATCTCGACGAAAA+AGG | - | chr3_2:34267137-34267156 | None:intergenic | 40.0% | |
| TCGTGTTAATTTCAGAACGC+AGG | + | chr3_2:34267393-34267412 | Msa0403710:intron | 40.0% | |
| CGTGTTAATTTCAGAACGCA+GGG | + | chr3_2:34267394-34267413 | Msa0403710:intron | 40.0% | |
| TGAAATTCGTGCAGAAGTCA+GGG | + | chr3_2:34267447-34267466 | Msa0403710:CDS | 40.0% | |
| GGAACAAATTGACACGAAAG+TGG | + | chr3_2:34267468-34267487 | Msa0403710:CDS | 40.0% | |
| AGAGTGGAAAGAAGAAGGAA+AGG | + | chr3_2:34267492-34267511 | Msa0403710:CDS | 40.0% | |
| TCATCAATGAAAAGGACACC+AGG | - | chr3_2:34267529-34267548 | None:intergenic | 40.0% | |
| ! | TGGTGTCCTTTTCATTGATG+AGG | + | chr3_2:34267528-34267547 | Msa0403710:CDS | 40.0% |
| ! | GTGCTTTTCATTCCTCAATC+GGG | + | chr3_2:34267570-34267589 | Msa0403710:CDS | 40.0% |
| !! | GTTGGTAGCCACAACTAAAA+TGG | - | chr3_2:34267617-34267636 | None:intergenic | 40.0% |
| AATAGTTGTGATGCCTCTGT+TGG | - | chr3_2:34267635-34267654 | None:intergenic | 40.0% | |
| AGGCGATCAAGTAGATCAAT+GGG | - | chr3_2:34267691-34267710 | None:intergenic | 40.0% | |
| TAGGCGATCAAGTAGATCAA+TGG | - | chr3_2:34267692-34267711 | None:intergenic | 40.0% | |
| GTTGAGTAGAGATGATGAGT+AGG | - | chr3_2:34267711-34267730 | None:intergenic | 40.0% | |
| CGAATTTCATCCTCAGTGTA+AGG | - | chr3_2:34267733-34267752 | None:intergenic | 40.0% | |
| TCTAATCACAGCATCTGCTT+TGG | + | chr3_2:34267861-34267880 | Msa0403710:CDS | 40.0% | |
| TTTGGCATGCCAAAAGAGAA+AGG | + | chr3_2:34267879-34267898 | Msa0403710:CDS | 40.0% | |
| TTGGCATGCCAAAAGAGAAA+GGG | + | chr3_2:34267880-34267899 | Msa0403710:CDS | 40.0% | |
| ! | CTGTCTTTCCCTTTCTCTTT+TGG | - | chr3_2:34267891-34267910 | None:intergenic | 40.0% |
| AAGATCGACACAGTACTTGA+TGG | + | chr3_2:34267960-34267979 | Msa0403710:CDS | 40.0% | |
| ATTTCACTGGACCATAGCAT+TGG | - | chr3_2:34268040-34268059 | None:intergenic | 40.0% | |
| CTGAGGTGAATGAATTTCAC+TGG | - | chr3_2:34268053-34268072 | None:intergenic | 40.0% | |
| CGAATAATAATTTGGGGGTC+TGG | - | chr3_2:34268365-34268384 | None:intergenic | 40.0% | |
| ! | CTCTACTACAGGAGTTTTGC+TGG | - | chr3_2:34264539-34264558 | None:intergenic | 45.0% |
| !!! | TTTTAGCTCCGTCATGGTTG+TGG | - | chr3_2:34264639-34264658 | None:intergenic | 45.0% |
| CGTTATCCTCCAGATGATCA+AGG | + | chr3_2:34264802-34264821 | Msa0403710:CDS | 45.0% | |
| ATCCTCCAGATGATCAAGGA+CGG | + | chr3_2:34264806-34264825 | Msa0403710:CDS | 45.0% | |
| ATCAAGGACGGTAAAATCGC+CGG | + | chr3_2:34264818-34264837 | Msa0403710:CDS | 45.0% | |
| TGGCAAAACCGCTATTGCAA+TGG | + | chr3_2:34264874-34264893 | Msa0403710:CDS | 45.0% | |
| GGCAAAACCGCTATTGCAAT+GGG | + | chr3_2:34264875-34264894 | Msa0403710:CDS | 45.0% | |
| AACCGCTATTGCAATGGGAA+TGG | + | chr3_2:34264880-34264899 | Msa0403710:CDS | 45.0% | |
| AAGCTCACTACCAGCAATCA+TGG | - | chr3_2:34264936-34264955 | None:intergenic | 45.0% | |
| ! | CAAGCTTTTCGGAAGGCTAT+AGG | + | chr3_2:34264992-34265011 | Msa0403710:CDS | 45.0% |
| GAGAATTAAGGAGGAAACGG+AGG | + | chr3_2:34265018-34265037 | Msa0403710:CDS | 45.0% | |
| GATTGAAGGTGAGGTTGTTG+AGG | + | chr3_2:34265042-34265061 | Msa0403710:CDS | 45.0% | |
| TGAGGTTCAGATTGATCGTC+CGG | + | chr3_2:34265060-34265079 | Msa0403710:CDS | 45.0% | |
| GAAGTTGACGTTGAAGTCGA+CGG | + | chr3_2:34265111-34265130 | Msa0403710:CDS | 45.0% | |
| ! | GGAGACGGTTTATGATTTGG+GGG | + | chr3_2:34265138-34265157 | Msa0403710:CDS | 45.0% |
| CGAAGATGATTGAGGCGATT+GGG | + | chr3_2:34265161-34265180 | Msa0403710:CDS | 45.0% | |
| ! | AGCTTGGGAGATCATTTTCG+CGG | + | chr3_2:34265245-34265264 | Msa0403710:CDS | 45.0% |
| !! | GTCGAGGGATTTTGATGCTA+TGG | + | chr3_2:34265267-34265286 | Msa0403710:CDS | 45.0% |
| !! | CGAGGGATTTTGATGCTATG+GGG | + | chr3_2:34265269-34265288 | Msa0403710:CDS | 45.0% |
| AAGTTTGTGCAGTGTCCTGA+TGG | + | chr3_2:34265301-34265320 | Msa0403710:CDS | 45.0% | |
| AAGCTATACCGGTGAGCTAA+TGG | + | chr3_2:34265655-34265674 | Msa0403710:intron | 45.0% | |
| GAATGAGTCAACGACAGCTT+TGG | + | chr3_2:34266273-34266292 | Msa0403710:intron | 45.0% | |
| AGTTCTCCCAAACTGTCTCA+CGG | + | chr3_2:34266650-34266669 | Msa0403710:intron | 45.0% | |
| CGTTGCTTACAATCAGTGCA+TGG | + | chr3_2:34267009-34267028 | Msa0403710:intron | 45.0% | |
| TGCTTACAATCAGTGCATGG+TGG | + | chr3_2:34267012-34267031 | Msa0403710:intron | 45.0% | |
| GCTTACAATCAGTGCATGGT+GGG | + | chr3_2:34267013-34267032 | Msa0403710:intron | 45.0% | |
| CTTACAATCAGTGCATGGTG+GGG | + | chr3_2:34267014-34267033 | Msa0403710:intron | 45.0% | |
| CTCAAGACTTAGAGCTGACT+TGG | - | chr3_2:34267065-34267084 | None:intergenic | 45.0% | |
| !! | TGACCCTTTTTCGTCGAGAT+TGG | + | chr3_2:34267130-34267149 | Msa0403710:intron | 45.0% |
| !! | GACCCTTTTTCGTCGAGATT+GGG | + | chr3_2:34267131-34267150 | Msa0403710:intron | 45.0% |
| TTTCAGAACGCAGGGATTTC+TGG | + | chr3_2:34267402-34267421 | Msa0403710:intron | 45.0% | |
| !!! | GGATTTCTGGCTCTTTTCAC+CGG | + | chr3_2:34267415-34267434 | Msa0403710:CDS | 45.0% |
| GTGAAATTCGTGCAGAAGTC+AGG | + | chr3_2:34267446-34267465 | Msa0403710:CDS | 45.0% | |
| TTAGTTGTGGCTACCAACAG+AGG | + | chr3_2:34267619-34267638 | Msa0403710:CDS | 45.0% | |
| !! | AGAGGCATCACAACTATTCG+AGG | + | chr3_2:34267637-34267656 | Msa0403710:CDS | 45.0% |
| ATCAATGGGAATCCCATGTG+GGG | - | chr3_2:34267677-34267696 | None:intergenic | 45.0% | |
| GATCAATGGGAATCCCATGT+GGG | - | chr3_2:34267678-34267697 | None:intergenic | 45.0% | |
| AGATCAATGGGAATCCCATG+TGG | - | chr3_2:34267679-34267698 | None:intergenic | 45.0% | |
| CTCTACTCAACCTTACACTG+AGG | + | chr3_2:34267720-34267739 | Msa0403710:CDS | 45.0% | |
| TCTGGATATCAGATGCCAAG+AGG | + | chr3_2:34267759-34267778 | Msa0403710:CDS | 45.0% | |
| TCATGTCTACGTCTTCCTCT+TGG | - | chr3_2:34267777-34267796 | None:intergenic | 45.0% | |
| GAAGACGTAGACATGAGTGA+AGG | + | chr3_2:34267781-34267800 | Msa0403710:CDS | 45.0% | |
| TGAAGACGACACCAATGCTA+TGG | + | chr3_2:34268026-34268045 | Msa0403710:CDS | 45.0% | |
| ATCTACAGCATTCACGTGAG+AGG | + | chr3_2:34268209-34268228 | Msa0403710:three_prime_UTR | 45.0% | |
| GATCATCTGGAGGATAACGC+CGG | - | chr3_2:34264801-34264820 | None:intergenic | 50.0% | |
| TACCGTCCTTGATCATCTGG+AGG | - | chr3_2:34264811-34264830 | None:intergenic | 50.0% | |
| ! | ATAGCGGTTTTGCCAGTACC+TGG | - | chr3_2:34264869-34264888 | None:intergenic | 50.0% |
| CGCCATTCCCATTGCAATAG+CGG | - | chr3_2:34264885-34264904 | None:intergenic | 50.0% | |
| ATGGGAATGGCGAAATCCCT+CGG | + | chr3_2:34264893-34264912 | Msa0403710:CDS | 50.0% | |
| GAAAGGAGTCTCAAGACCGA+GGG | - | chr3_2:34264912-34264931 | None:intergenic | 50.0% | |
| ACTCCTTTCGCCATGATTGC+TGG | + | chr3_2:34264923-34264942 | Msa0403710:CDS | 50.0% | |
| CTACCAGCAATCATGGCGAA+AGG | - | chr3_2:34264929-34264948 | None:intergenic | 50.0% | |
| !! | TGGTAGTGAGCTTTTCTCGC+TGG | + | chr3_2:34264943-34264962 | Msa0403710:CDS | 50.0% |
| GAGGAAACGGAGGTGATTGA+AGG | + | chr3_2:34265028-34265047 | Msa0403710:CDS | 50.0% | |
| AACGGAGGTGATTGAAGGTG+AGG | + | chr3_2:34265033-34265052 | Msa0403710:CDS | 50.0% | |
| TTTGGGGGCGAAGATGATTG+AGG | + | chr3_2:34265153-34265172 | Msa0403710:CDS | 50.0% | |
| GCGAAGATGATTGAGGCGAT+TGG | + | chr3_2:34265160-34265179 | Msa0403710:CDS | 50.0% | |
| GATGATTGAGGCGATTGGGA+AGG | + | chr3_2:34265165-34265184 | Msa0403710:CDS | 50.0% | |
| GGAAGGAGAAAGTGACGAGT+GGG | + | chr3_2:34265182-34265201 | Msa0403710:CDS | 50.0% | |
| GAAGGAGAAAGTGACGAGTG+GGG | + | chr3_2:34265183-34265202 | Msa0403710:CDS | 50.0% | |
| TCCGGGAAGATTACGAAGCT+TGG | + | chr3_2:34265229-34265248 | Msa0403710:CDS | 50.0% | |
| CCCAAGCTTCGTAATCTTCC+CGG | - | chr3_2:34265233-34265252 | None:intergenic | 50.0% | |
| CCGGGAAGATTACGAAGCTT+GGG | + | chr3_2:34265230-34265249 | Msa0403710:CDS | 50.0% | |
| ! | GAGATCATTTTCGCGGTCGA+GGG | + | chr3_2:34265252-34265271 | Msa0403710:CDS | 50.0% |
| ! | TTTTGATGCTATGGGGCCTC+AGG | + | chr3_2:34265276-34265295 | Msa0403710:CDS | 50.0% |
| CACTGCACAAACTTCACCTG+AGG | - | chr3_2:34265295-34265314 | None:intergenic | 50.0% | |
| CTCTTCTGCAACTCACCATC+AGG | - | chr3_2:34265319-34265338 | None:intergenic | 50.0% | |
| ! | CTGATGGTGAGTTGCAGAAG+AGG | + | chr3_2:34265317-34265336 | Msa0403710:CDS | 50.0% |
| TGGTGAGTTGCAGAAGAGGA+AGG | + | chr3_2:34265321-34265340 | Msa0403710:CDS | 50.0% | |
| TGAGTTGCAGAAGAGGAAGG+AGG | + | chr3_2:34265324-34265343 | Msa0403710:CDS | 50.0% | |
| TGATGCATCCATCGTGTGCA+TGG | + | chr3_2:34266090-34266109 | Msa0403710:intron | 50.0% | |
| AGACTTGCCAATGATGGCCT+TGG | + | chr3_2:34266130-34266149 | Msa0403710:intron | 50.0% | |
| GACTTGCCAATGATGGCCTT+GGG | + | chr3_2:34266131-34266150 | Msa0403710:intron | 50.0% | |
| ATGCTACCCAAGGCCATCAT+TGG | - | chr3_2:34266140-34266159 | None:intergenic | 50.0% | |
| ! | AATGATGGCCTTGGGTAGCA+TGG | + | chr3_2:34266139-34266158 | Msa0403710:intron | 50.0% |
| ATATACCGCCATGCTACCCA+AGG | - | chr3_2:34266150-34266169 | None:intergenic | 50.0% | |
| TGACCCATTGTTGCCGAGAT+CGG | + | chr3_2:34266200-34266219 | Msa0403710:intron | 50.0% | |
| GTTCTCCCAAACTGTCTCAC+GGG | + | chr3_2:34266651-34266670 | Msa0403710:intron | 50.0% | |
| AAGCACCCGTGAGACAGTTT+GGG | - | chr3_2:34266659-34266678 | None:intergenic | 50.0% | |
| TAAGCACCCGTGAGACAGTT+TGG | - | chr3_2:34266660-34266679 | None:intergenic | 50.0% | |
| ACGAATTTCACCCGTGTCAC+CGG | - | chr3_2:34267437-34267456 | None:intergenic | 50.0% | |
| TTGACACGAAAGTGGCAGAG+TGG | + | chr3_2:34267476-34267495 | Msa0403710:CDS | 50.0% | |
| GTGGCAGAGTGGAAAGAAGA+AGG | + | chr3_2:34267487-34267506 | Msa0403710:CDS | 50.0% | |
| TTCATTCCTCAATCGGGCTC+TGG | + | chr3_2:34267576-34267595 | Msa0403710:CDS | 50.0% | |
| TAGCTCCGTCATGGTTGTGG+CGG | - | chr3_2:34264636-34264655 | None:intergenic | 55.0% | |
| CTAAGGAAGAGTCGAGACCG+AGG | - | chr3_2:34264724-34264743 | None:intergenic | 55.0% | |
| TTTGCCAGTACCTGGCTGAC+CGG | - | chr3_2:34264861-34264880 | None:intergenic | 55.0% | |
| CGAAAGGAGTCTCAAGACCG+AGG | - | chr3_2:34264913-34264932 | None:intergenic | 55.0% | |
| GGTTCAGATTGATCGTCCGG+CGG | + | chr3_2:34265063-34265082 | Msa0403710:CDS | 55.0% | |
| GACGTTGAAGTCGACGGAGA+TGG | + | chr3_2:34265117-34265136 | Msa0403710:CDS | 55.0% | |
| GAAGTCGACGGAGATGGAGA+CGG | + | chr3_2:34265123-34265142 | Msa0403710:CDS | 55.0% | |
| GGGAAGGAGAAAGTGACGAG+TGG | + | chr3_2:34265181-34265200 | Msa0403710:CDS | 55.0% | |
| ! | GGAGATCATTTTCGCGGTCG+AGG | + | chr3_2:34265251-34265270 | Msa0403710:CDS | 55.0% |
| GTTGCAGAAGAGGAAGGAGG+TGG | + | chr3_2:34265327-34265346 | Msa0403710:CDS | 55.0% | |
| TCGGCAACAATGGGTCAGCA+AGG | - | chr3_2:34266197-34266216 | None:intergenic | 55.0% | |
| GACCCATTGTTGCCGAGATC+GGG | + | chr3_2:34266201-34266220 | Msa0403710:intron | 55.0% | |
| CTCCCGATCTCGGCAACAAT+GGG | - | chr3_2:34266206-34266225 | None:intergenic | 55.0% | |
| TCTCCCGATCTCGGCAACAA+TGG | - | chr3_2:34266207-34266226 | None:intergenic | 55.0% | |
| AAGTGGCCACATCATGCTGC+TGG | + | chr3_2:34266772-34266791 | Msa0403710:intron | 55.0% | |
| AGTGGCCACATCATGCTGCT+GGG | + | chr3_2:34266773-34266792 | Msa0403710:intron | 55.0% | |
| TGTGTCCCAGCAGCATGATG+TGG | - | chr3_2:34266781-34266800 | None:intergenic | 55.0% | |
| ! | GGCTCTTTTCACCGGTGACA+CGG | + | chr3_2:34267423-34267442 | Msa0403710:CDS | 55.0% |
| ! | GCTCTTTTCACCGGTGACAC+GGG | + | chr3_2:34267424-34267443 | Msa0403710:CDS | 55.0% |
| GGAAAGGCAGAGATTGTGCC+TGG | + | chr3_2:34267508-34267527 | Msa0403710:CDS | 55.0% | |
| CATTCTCCAGAGCCCGATTG+AGG | - | chr3_2:34267585-34267604 | None:intergenic | 55.0% | |
| GTGTGCGCGCTCTCTACTAC+AGG | - | chr3_2:34264550-34264569 | None:intergenic | 60.0% | |
| GGCGATGGAGATGGAGAGAG+TGG | - | chr3_2:34264615-34264634 | None:intergenic | 60.0% | |
| CATCGCCGCCACAACCATGA+CGG | + | chr3_2:34264628-34264647 | Msa0403710:exon | 60.0% | |
| CTCTATGCGCGTTAGGTCGC+GGG | - | chr3_2:34264672-34264691 | None:intergenic | 60.0% | |
| GCTCTATGCGCGTTAGGTCG+CGG | - | chr3_2:34264673-34264692 | None:intergenic | 60.0% | |
| CTAACGCGCATAGAGCGCGT+GGG | + | chr3_2:34264677-34264696 | Msa0403710:CDS | 60.0% | |
| GGAGCACACTCACACATCCG+CGG | + | chr3_2:34264698-34264717 | Msa0403710:CDS | 60.0% | |
| GACTTGGCCGACCATGCCTT+CGG | - | chr3_2:34264762-34264781 | None:intergenic | 60.0% | |
| CGGCTTTACGAGCGGAGACT+TGG | - | chr3_2:34264778-34264797 | None:intergenic | 60.0% | |
| CATCTGGAGGATAACGCCGG+CGG | - | chr3_2:34264798-34264817 | None:intergenic | 60.0% | |
| TCAGATTGATCGTCCGGCGG+TGG | + | chr3_2:34265066-34265085 | Msa0403710:CDS | 60.0% | |
| CATCCATCGTGTGCATGGCG+AGG | + | chr3_2:34266095-34266114 | Msa0403710:intron | 60.0% | |
| CTACCTCGCCATGCACACGA+TGG | - | chr3_2:34266101-34266120 | None:intergenic | 60.0% | |
| ! | GATGGCCTTGGGTAGCATGG+CGG | + | chr3_2:34266142-34266161 | Msa0403710:intron | 60.0% |
| GCACTCGCTTCTCCCGATCT+CGG | - | chr3_2:34266216-34266235 | None:intergenic | 60.0% | |
| GGTTGTGGCGGCGATGGAGA+TGG | - | chr3_2:34264624-34264643 | None:intergenic | 65.0% | |
| CGTCATGGTTGTGGCGGCGA+TGG | - | chr3_2:34264630-34264649 | None:intergenic | 65.0% | |
| CCACGCGCTCTATGCGCGTT+AGG | - | chr3_2:34264679-34264698 | None:intergenic | 65.0% | |
| CCTAACGCGCATAGAGCGCG+TGG | + | chr3_2:34264676-34264695 | Msa0403710:CDS | 65.0% | |
| CACTCACACATCCGCGGCCT+CGG | + | chr3_2:34264704-34264723 | Msa0403710:CDS | 65.0% | |
| AAGAGTCGAGACCGAGGCCG+CGG | - | chr3_2:34264718-34264737 | None:intergenic | 65.0% | |
| ! | GCCGTCTCCGAAGGCATGGT+CGG | + | chr3_2:34264752-34264771 | Msa0403710:CDS | 65.0% |
| GCCGACCATGCCTTCGGAGA+CGG | - | chr3_2:34264756-34264775 | None:intergenic | 65.0% | |
| GTCTCCGCTCGTAAAGCCGC+CGG | + | chr3_2:34264779-34264798 | Msa0403710:CDS | 65.0% | |
| AACGCCGGCGGCTTTACGAG+CGG | - | chr3_2:34264786-34264805 | None:intergenic | 65.0% | |
| ATTGATCGTCCGGCGGTGGC+TGG | + | chr3_2:34265070-34265089 | Msa0403710:CDS | 65.0% | |
| ! | GGAGACGGCGCGTGGCTCTA+AGG | - | chr3_2:34264741-34264760 | None:intergenic | 70.0% |
| ATGCCTTCGGAGACGGCGCG+TGG | - | chr3_2:34264749-34264768 | None:intergenic | 70.0% | |
| ACGCGCCGTCTCCGAAGGCA+TGG | + | chr3_2:34264748-34264767 | Msa0403710:CDS | 70.0% | |
| GGCGAGGAGAACAGCGCGTC+CGG | - | chr3_2:34264840-34264859 | None:intergenic | 70.0% | |
| GGACGCGCTGTTCTCCTCGC+CGG | + | chr3_2:34264839-34264858 | Msa0403710:CDS | 70.0% | |
| GTTCTCCTCGCCGGTCAGCC+AGG | + | chr3_2:34264848-34264867 | Msa0403710:CDS | 70.0% | |
| CAGTACCTGGCTGACCGGCG+AGG | - | chr3_2:34264856-34264875 | None:intergenic | 70.0% | |
| CTCGCCGGTCAGCCAGGTAC+TGG | + | chr3_2:34264854-34264873 | Msa0403710:CDS | 70.0% | |
| GGCTGGAGCTGCGGCGAAGA+CGG | + | chr3_2:34265087-34265106 | Msa0403710:CDS | 70.0% | |
| GCTGGAGCTGCGGCGAAGAC+GGG | + | chr3_2:34265088-34265107 | Msa0403710:CDS | 70.0% | |
| CTGGAGCTGCGGCGAAGACG+GGG | + | chr3_2:34265089-34265108 | Msa0403710:CDS | 70.0% | |
| GAGCCACGCGCCGTCTCCGA+AGG | + | chr3_2:34264743-34264762 | Msa0403710:CDS | 75.0% | |
| TCCGGCGGTGGCTGGAGCTG+CGG | + | chr3_2:34265078-34265097 | Msa0403710:CDS | 75.0% | |
| ! | GCCGCAGCTCCAGCCACCGC+CGG | - | chr3_2:34265082-34265101 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 34264530 | 34268401 | 34264530 | ID=Msa0403710;Name=Msa0403710 |
| chr3_2 | mRNA | 34264530 | 34268401 | 34264530 | ID=Msa0403710-mRNA-1;Parent=Msa0403710;Name=Msa0403710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=114|1|1|1|1|1|2|345|465 |
| chr3_2 | exon | 34264530 | 34265392 | 34264530 | ID=Msa0403710-mRNA-1:exon:6802;Parent=Msa0403710-mRNA-1 |
| chr3_2 | exon | 34267408 | 34268401 | 34267408 | ID=Msa0403710-mRNA-1:exon:6803;Parent=Msa0403710-mRNA-1 |
| chr3_2 | five_prime_UTR | 34264530 | 34264643 | 34264530 | ID=Msa0403710-mRNA-1:five_prime_utr;Parent=Msa0403710-mRNA-1 |
| chr3_2 | CDS | 34264644 | 34265392 | 34264644 | ID=Msa0403710-mRNA-1:cds;Parent=Msa0403710-mRNA-1 |
| chr3_2 | CDS | 34267408 | 34268056 | 34267408 | ID=Msa0403710-mRNA-1:cds;Parent=Msa0403710-mRNA-1 |
| chr3_2 | three_prime_UTR | 34268057 | 34268401 | 34268057 | ID=Msa0403710-mRNA-1:three_prime_utr;Parent=Msa0403710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
