Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456690 | XP_013460118.1 | 95.783 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 6.90e-114 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456690 | B7FGG7 | 95.783 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 3.29e-114 | 330 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364710 | Msa0456690 | 0.963351 | 5.593080e-122 | -8.615850e-47 |
| Msa0456690 | Msa0959480 | 0.808956 | 2.400587e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456690 | MtrunA17_Chr3g0103711 | 95.783 | 166 | 7 | 0 | 1 | 166 | 1 | 166 | 6.34e-118 | 330 |
| Msa0456690 | MtrunA17_Chr5g0401701 | 37.500 | 176 | 96 | 6 | 1 | 166 | 5 | 176 | 1.29e-26 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456690 | AT4G37300.1 | 39.535 | 172 | 89 | 6 | 6 | 166 | 5 | 172 | 2.66e-25 | 95.9 |
Find 32 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATATTTATATTTATT+TGG | 0.092683 | 3_3:-50815096 | None:intergenic |
| CGTTGAAATTGTAGCATTTC+AGG | 0.143934 | 3_3:-50813247 | None:intergenic |
| TTGGTGCCACTTCTTCAAAA+TGG | 0.336944 | 3_3:-50813150 | None:intergenic |
| ATGGATGCTTCTTCTTCAGC+TGG | 0.342784 | 3_3:-50813109 | None:intergenic |
| CTTTCACCACAGACAGGAAA+AGG | 0.363878 | 3_3:+50814719 | Msa0456690:intron |
| TTTCAGTTATCACTCCTGTT+AGG | 0.372318 | 3_3:-50814988 | None:intergenic |
| GAGTCATGAGTGTCGTTATC+TGG | 0.392302 | 3_3:-50814785 | None:intergenic |
| GGAACCCAGTCATTGGTTGC+TGG | 0.416375 | 3_3:-50814830 | None:intergenic |
| AGATGAGTGTCACTTCTGTT+TGG | 0.417853 | 3_3:-50813085 | None:intergenic |
| TGAAGTAGCTGAAGAATTTG+TGG | 0.418411 | 3_3:+50813914 | Msa0456690:CDS |
| ACAATTCAGACAAACCTAAC+AGG | 0.431560 | 3_3:+50814974 | Msa0456690:CDS |
| GCAATCCAGCAACCAATGAC+TGG | 0.433217 | 3_3:+50814825 | Msa0456690:CDS |
| AAAATATGGAGGAGGCTAGA+AGG | 0.456096 | 3_3:+50813062 | Msa0456690:exon |
| AACAGGAGTGATAACTGAAA+TGG | 0.456626 | 3_3:+50814991 | Msa0456690:exon |
| TGACTCTCATCACTCTACTA+AGG | 0.462846 | 3_3:+50814802 | Msa0456690:CDS |
| TTAGAAAAGAGAAGAAGGTA+AGG | 0.470909 | 3_3:+50813038 | Msa0456690:five_prime_UTR |
| TTTGTTCAAGGTTATTGTGT+TGG | 0.481796 | 3_3:+50815122 | Msa0456690:three_prime_UTR |
| AGGAGCTGGAACCCAGTCAT+TGG | 0.486673 | 3_3:-50814837 | None:intergenic |
| CAAGCTTAGAAAAGAGAAGA+AGG | 0.503021 | 3_3:+50813033 | Msa0456690:five_prime_UTR |
| GTTCAGAAATTGGTTTACGA+TGG | 0.533628 | 3_3:+50813888 | Msa0456690:intron |
| AATACCTCACTGAAAGGAGC+TGG | 0.537040 | 3_3:-50814851 | None:intergenic |
| GACTCTCATCACTCTACTAA+GGG | 0.542573 | 3_3:+50814803 | Msa0456690:CDS |
| TGGATGCTTCTTCTTCAGCT+GGG | 0.544474 | 3_3:-50813108 | None:intergenic |
| TTTCACCACAGACAGGAAAA+GGG | 0.552205 | 3_3:+50814720 | Msa0456690:intron |
| TGAAAATGATCCTCAAGAGA+AGG | 0.574785 | 3_3:+50813273 | Msa0456690:CDS |
| TAGGAACAAACCTTCTCTTG+AGG | 0.587802 | 3_3:-50813283 | None:intergenic |
| CAATCCAGCAACCAATGACT+GGG | 0.590043 | 3_3:+50814826 | Msa0456690:CDS |
| ATGTAAAATACCTCACTGAA+AGG | 0.593015 | 3_3:-50814857 | None:intergenic |
| GGTTCCAGCTCCTTTCAGTG+AGG | 0.664768 | 3_3:+50814847 | Msa0456690:CDS |
| TGTCGTTATCTGGTTCTATG+TGG | 0.665597 | 3_3:-50814775 | None:intergenic |
| CGTAGACAAACATCATCACA+CGG | 0.672277 | 3_3:+50813965 | Msa0456690:CDS |
| GAAGCATACTCACTACGTTG+AGG | 0.680375 | 3_3:-50813187 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATTTAATATATTAACTT+AGG | + | chr3_3:50813513-50813532 | Msa0456690:intron | 10.0% |
| !! | CTATTTAATATATTAACTTA+GGG | + | chr3_3:50813514-50813533 | Msa0456690:intron | 10.0% |
| !!! | AATTATTTTTTTTGAAACAA+CGG | + | chr3_3:50813590-50813609 | Msa0456690:intron | 10.0% |
| !! | TAGAAATTAGAAAATAAAAT+AGG | - | chr3_3:50814126-50814145 | None:intergenic | 10.0% |
| !!! | TTTTATTTTCTAATTTCTAA+TGG | + | chr3_3:50814127-50814146 | Msa0456690:intron | 10.0% |
| !!! | AATATAAAGTTTTTTTTTGA+AGG | - | chr3_3:50814176-50814195 | None:intergenic | 10.0% |
| !!! | TATTAATATAATGGATAAAA+GGG | - | chr3_3:50814506-50814525 | None:intergenic | 10.0% |
| !!! | TTATTAATATAATGGATAAA+AGG | - | chr3_3:50814507-50814526 | None:intergenic | 10.0% |
| !! | ATAAGATTTATTAACTAAAA+TGG | - | chr3_3:50814532-50814551 | None:intergenic | 10.0% |
| !! | CACAAATATTTATATTTATT+TGG | - | chr3_3:50815099-50815118 | None:intergenic | 10.0% |
| !! | TCTATTTAATATATTAACTT+AGG | + | chr3_3:50813513-50813532 | Msa0456690:intron | 10.0% |
| !! | CTATTTAATATATTAACTTA+GGG | + | chr3_3:50813514-50813533 | Msa0456690:intron | 10.0% |
| !!! | AATTATTTTTTTTGAAACAA+CGG | + | chr3_3:50813590-50813609 | Msa0456690:intron | 10.0% |
| !! | TAGAAATTAGAAAATAAAAT+AGG | - | chr3_3:50814126-50814145 | None:intergenic | 10.0% |
| !!! | TTTTATTTTCTAATTTCTAA+TGG | + | chr3_3:50814127-50814146 | Msa0456690:intron | 10.0% |
| !!! | AATATAAAGTTTTTTTTTGA+AGG | - | chr3_3:50814176-50814195 | None:intergenic | 10.0% |
| !!! | TATTAATATAATGGATAAAA+GGG | - | chr3_3:50814506-50814525 | None:intergenic | 10.0% |
| !!! | TTATTAATATAATGGATAAA+AGG | - | chr3_3:50814507-50814526 | None:intergenic | 10.0% |
| !! | ATAAGATTTATTAACTAAAA+TGG | - | chr3_3:50814532-50814551 | None:intergenic | 10.0% |
| !! | CACAAATATTTATATTTATT+TGG | - | chr3_3:50815099-50815118 | None:intergenic | 10.0% |
| !!! | TATTTAACTTATTATGAAAC+TGG | - | chr3_3:50813350-50813369 | None:intergenic | 15.0% |
| !!! | AAATGGTCTTATTAATATAA+TGG | - | chr3_3:50814515-50814534 | None:intergenic | 15.0% |
| !!! | TATTTAACTTATTATGAAAC+TGG | - | chr3_3:50813350-50813369 | None:intergenic | 15.0% |
| !!! | AAATGGTCTTATTAATATAA+TGG | - | chr3_3:50814515-50814534 | None:intergenic | 15.0% |
| !!! | AAGCTTGTGTAAATTATTTT+AGG | - | chr3_3:50813020-50813039 | None:intergenic | 20.0% |
| !! | ATGTTGACCAAAAAAATTAA+AGG | + | chr3_3:50813628-50813647 | Msa0456690:intron | 20.0% |
| !!! | ATCATCACCTTTAATTTTTT+TGG | - | chr3_3:50813638-50813657 | None:intergenic | 20.0% |
| !! | AGACAATTATATCAACAATT+TGG | - | chr3_3:50813750-50813769 | None:intergenic | 20.0% |
| !! | TATAATTGTCTCTTGTAAAT+AGG | + | chr3_3:50813759-50813778 | Msa0456690:intron | 20.0% |
| !! | AAAAATAATACTAGTCAAGT+AGG | - | chr3_3:50814005-50814024 | None:intergenic | 20.0% |
| !!! | TATTTTCTAATTTCTAATGG+AGG | + | chr3_3:50814130-50814149 | Msa0456690:intron | 20.0% |
| !!! | ATTTTCTAATTTCTAATGGA+GGG | + | chr3_3:50814131-50814150 | Msa0456690:intron | 20.0% |
| !! | ATCTATTAAATATGATTCGT+TGG | - | chr3_3:50814208-50814227 | None:intergenic | 20.0% |
| !!! | CTCATATTAAATGTTTTCTA+AGG | - | chr3_3:50814606-50814625 | None:intergenic | 20.0% |
| !! | ATTGAGAAAATAATAGCATT+TGG | + | chr3_3:50814663-50814682 | Msa0456690:intron | 20.0% |
| !!! | CTTTGATTTGAATATGTTTT+AGG | + | chr3_3:50814945-50814964 | Msa0456690:intron | 20.0% |
| !!! | AGAAATTTTATTTCAGATTG+TGG | + | chr3_3:50815044-50815063 | Msa0456690:three_prime_UTR | 20.0% |
| !!! | GAAATTTTATTTCAGATTGT+GGG | + | chr3_3:50815045-50815064 | Msa0456690:three_prime_UTR | 20.0% |
| !!! | ATATTTGTGATTTTTGTTCA+AGG | + | chr3_3:50815110-50815129 | Msa0456690:three_prime_UTR | 20.0% |
| !!! | AAGCTTGTGTAAATTATTTT+AGG | - | chr3_3:50813020-50813039 | None:intergenic | 20.0% |
| !! | ATGTTGACCAAAAAAATTAA+AGG | + | chr3_3:50813628-50813647 | Msa0456690:intron | 20.0% |
| !!! | ATCATCACCTTTAATTTTTT+TGG | - | chr3_3:50813638-50813657 | None:intergenic | 20.0% |
| !! | AGACAATTATATCAACAATT+TGG | - | chr3_3:50813750-50813769 | None:intergenic | 20.0% |
| !! | TATAATTGTCTCTTGTAAAT+AGG | + | chr3_3:50813759-50813778 | Msa0456690:intron | 20.0% |
| !! | AAAAATAATACTAGTCAAGT+AGG | - | chr3_3:50814005-50814024 | None:intergenic | 20.0% |
| !!! | TATTTTCTAATTTCTAATGG+AGG | + | chr3_3:50814130-50814149 | Msa0456690:intron | 20.0% |
| !!! | ATTTTCTAATTTCTAATGGA+GGG | + | chr3_3:50814131-50814150 | Msa0456690:intron | 20.0% |
| !! | ATCTATTAAATATGATTCGT+TGG | - | chr3_3:50814208-50814227 | None:intergenic | 20.0% |
| !!! | CTCATATTAAATGTTTTCTA+AGG | - | chr3_3:50814606-50814625 | None:intergenic | 20.0% |
| !! | ATTGAGAAAATAATAGCATT+TGG | + | chr3_3:50814663-50814682 | Msa0456690:intron | 20.0% |
| !!! | CTTTGATTTGAATATGTTTT+AGG | + | chr3_3:50814945-50814964 | Msa0456690:intron | 20.0% |
| !!! | AGAAATTTTATTTCAGATTG+TGG | + | chr3_3:50815044-50815063 | Msa0456690:three_prime_UTR | 20.0% |
| !!! | GAAATTTTATTTCAGATTGT+GGG | + | chr3_3:50815045-50815064 | Msa0456690:three_prime_UTR | 20.0% |
| !!! | ATATTTGTGATTTTTGTTCA+AGG | + | chr3_3:50815110-50815129 | Msa0456690:three_prime_UTR | 20.0% |
| !! | GAGTTAATTGACTTACAAAT+AGG | - | chr3_3:50813701-50813720 | None:intergenic | 25.0% |
| ! | GAATGAAAAAGGGAAAAAAA+AGG | - | chr3_3:50813859-50813878 | None:intergenic | 25.0% |
| ! | CATAATTGTGGAATGAAAAA+GGG | - | chr3_3:50813869-50813888 | None:intergenic | 25.0% |
| ! | ACATAATTGTGGAATGAAAA+AGG | - | chr3_3:50813870-50813889 | None:intergenic | 25.0% |
| ! | AGAAAGACACAAAAAGTTAA+TGG | + | chr3_3:50814308-50814327 | Msa0456690:intron | 25.0% |
| ! | GAAAGACACAAAAAGTTAAT+GGG | + | chr3_3:50814309-50814328 | Msa0456690:intron | 25.0% |
| ! | TTAGAATTATTGTCTAGAGA+TGG | + | chr3_3:50814448-50814467 | Msa0456690:intron | 25.0% |
| !!! | AATATAATGGATAAAAGGGA+CGG | - | chr3_3:50814502-50814521 | None:intergenic | 25.0% |
| !!! | TGATTTGAATATGTTTTAGG+AGG | + | chr3_3:50814948-50814967 | Msa0456690:intron | 25.0% |
| !! | GAGTTAATTGACTTACAAAT+AGG | - | chr3_3:50813701-50813720 | None:intergenic | 25.0% |
| ! | GAATGAAAAAGGGAAAAAAA+AGG | - | chr3_3:50813859-50813878 | None:intergenic | 25.0% |
| ! | CATAATTGTGGAATGAAAAA+GGG | - | chr3_3:50813869-50813888 | None:intergenic | 25.0% |
| ! | ACATAATTGTGGAATGAAAA+AGG | - | chr3_3:50813870-50813889 | None:intergenic | 25.0% |
| ! | AGAAAGACACAAAAAGTTAA+TGG | + | chr3_3:50814308-50814327 | Msa0456690:intron | 25.0% |
| ! | GAAAGACACAAAAAGTTAAT+GGG | + | chr3_3:50814309-50814328 | Msa0456690:intron | 25.0% |
| ! | TTAGAATTATTGTCTAGAGA+TGG | + | chr3_3:50814448-50814467 | Msa0456690:intron | 25.0% |
| !!! | AATATAATGGATAAAAGGGA+CGG | - | chr3_3:50814502-50814521 | None:intergenic | 25.0% |
| !!! | TGATTTGAATATGTTTTAGG+AGG | + | chr3_3:50814948-50814967 | Msa0456690:intron | 25.0% |
| TTAGAAAAGAGAAGAAGGTA+AGG | + | chr3_3:50813038-50813057 | Msa0456690:five_prime_UTR | 30.0% | |
| GAAGAAGGTAAGGAAAAATA+TGG | + | chr3_3:50813048-50813067 | Msa0456690:exon | 30.0% | |
| ! | GAGGAAAAACATTGTGTTTT+AGG | - | chr3_3:50813305-50813324 | None:intergenic | 30.0% |
| CGTGGAAATAAAACTTTAAG+AGG | - | chr3_3:50813324-50813343 | None:intergenic | 30.0% | |
| TTATTATGAAACTGGAAACG+TGG | - | chr3_3:50813342-50813361 | None:intergenic | 30.0% | |
| ! | ACTACTAGTAGTAATGCTTT+TGG | + | chr3_3:50813674-50813693 | Msa0456690:intron | 30.0% |
| CCAATTTCTGAACATAATTG+TGG | - | chr3_3:50813881-50813900 | None:intergenic | 30.0% | |
| CCACAATTATGTTCAGAAAT+TGG | + | chr3_3:50813878-50813897 | Msa0456690:intron | 30.0% | |
| TAATACTAGTCAAGTAGGAA+TGG | - | chr3_3:50814000-50814019 | None:intergenic | 30.0% | |
| CAACAAAGTATGTACATGAA+TGG | - | chr3_3:50814057-50814076 | None:intergenic | 30.0% | |
| TAAATGCTAGATGCAAATCT+AGG | - | chr3_3:50814233-50814252 | None:intergenic | 30.0% | |
| !! | ATATAATGGATAAAAGGGAC+GGG | - | chr3_3:50814501-50814520 | None:intergenic | 30.0% |
| ATGTAAAATACCTCACTGAA+AGG | - | chr3_3:50814860-50814879 | None:intergenic | 30.0% | |
| TTTGTTCAAGGTTATTGTGT+TGG | + | chr3_3:50815122-50815141 | Msa0456690:three_prime_UTR | 30.0% | |
| TTAGAAAAGAGAAGAAGGTA+AGG | + | chr3_3:50813038-50813057 | Msa0456690:five_prime_UTR | 30.0% | |
| GAAGAAGGTAAGGAAAAATA+TGG | + | chr3_3:50813048-50813067 | Msa0456690:exon | 30.0% | |
| ! | GAGGAAAAACATTGTGTTTT+AGG | - | chr3_3:50813305-50813324 | None:intergenic | 30.0% |
| CGTGGAAATAAAACTTTAAG+AGG | - | chr3_3:50813324-50813343 | None:intergenic | 30.0% | |
| TTATTATGAAACTGGAAACG+TGG | - | chr3_3:50813342-50813361 | None:intergenic | 30.0% | |
| ! | ACTACTAGTAGTAATGCTTT+TGG | + | chr3_3:50813674-50813693 | Msa0456690:intron | 30.0% |
| CCAATTTCTGAACATAATTG+TGG | - | chr3_3:50813881-50813900 | None:intergenic | 30.0% | |
| CCACAATTATGTTCAGAAAT+TGG | + | chr3_3:50813878-50813897 | Msa0456690:intron | 30.0% | |
| TAATACTAGTCAAGTAGGAA+TGG | - | chr3_3:50814000-50814019 | None:intergenic | 30.0% | |
| CAACAAAGTATGTACATGAA+TGG | - | chr3_3:50814057-50814076 | None:intergenic | 30.0% | |
| TAAATGCTAGATGCAAATCT+AGG | - | chr3_3:50814233-50814252 | None:intergenic | 30.0% | |
| !! | ATATAATGGATAAAAGGGAC+GGG | - | chr3_3:50814501-50814520 | None:intergenic | 30.0% |
| ATGTAAAATACCTCACTGAA+AGG | - | chr3_3:50814860-50814879 | None:intergenic | 30.0% | |
| TTTGTTCAAGGTTATTGTGT+TGG | + | chr3_3:50815122-50815141 | Msa0456690:three_prime_UTR | 30.0% | |
| CAAGCTTAGAAAAGAGAAGA+AGG | + | chr3_3:50813033-50813052 | Msa0456690:five_prime_UTR | 35.0% | |
| GAAGGTAAGGAAAAATATGG+AGG | + | chr3_3:50813051-50813070 | Msa0456690:exon | 35.0% | |
| !!! | GTGTCTTGTTTTTGCTTCTA+TGG | - | chr3_3:50813131-50813150 | None:intergenic | 35.0% |
| !! | AAGACACCATTTTGAAGAAG+TGG | + | chr3_3:50813144-50813163 | Msa0456690:CDS | 35.0% |
| CGTTGAAATTGTAGCATTTC+AGG | - | chr3_3:50813250-50813269 | None:intergenic | 35.0% | |
| TGAAAATGATCCTCAAGAGA+AGG | + | chr3_3:50813273-50813292 | Msa0456690:CDS | 35.0% | |
| ! | AAGTATGATTTTGCGTTTGC+CGG | + | chr3_3:50813408-50813427 | Msa0456690:intron | 35.0% |
| ! | GTTCAGAAATTGGTTTACGA+TGG | + | chr3_3:50813888-50813907 | Msa0456690:intron | 35.0% |
| TGAAGTAGCTGAAGAATTTG+TGG | + | chr3_3:50813914-50813933 | Msa0456690:CDS | 35.0% | |
| ! | CTAGCATTTACACATCGATT+TGG | + | chr3_3:50814243-50814262 | Msa0456690:intron | 35.0% |
| ! | AGTTAATGGGCATCAAAGAT+AGG | + | chr3_3:50814322-50814341 | Msa0456690:intron | 35.0% |
| ! | GTTAATGGGCATCAAAGATA+GGG | + | chr3_3:50814323-50814342 | Msa0456690:intron | 35.0% |
| ACAATTCAGACAAACCTAAC+AGG | + | chr3_3:50814974-50814993 | Msa0456690:CDS | 35.0% | |
| TTTCAGTTATCACTCCTGTT+AGG | - | chr3_3:50814991-50815010 | None:intergenic | 35.0% | |
| AACAGGAGTGATAACTGAAA+TGG | + | chr3_3:50814991-50815010 | Msa0456690:exon | 35.0% | |
| CAAGCTTAGAAAAGAGAAGA+AGG | + | chr3_3:50813033-50813052 | Msa0456690:five_prime_UTR | 35.0% | |
| GAAGGTAAGGAAAAATATGG+AGG | + | chr3_3:50813051-50813070 | Msa0456690:exon | 35.0% | |
| !!! | GTGTCTTGTTTTTGCTTCTA+TGG | - | chr3_3:50813131-50813150 | None:intergenic | 35.0% |
| !! | AAGACACCATTTTGAAGAAG+TGG | + | chr3_3:50813144-50813163 | Msa0456690:CDS | 35.0% |
| CGTTGAAATTGTAGCATTTC+AGG | - | chr3_3:50813250-50813269 | None:intergenic | 35.0% | |
| TGAAAATGATCCTCAAGAGA+AGG | + | chr3_3:50813273-50813292 | Msa0456690:CDS | 35.0% | |
| ! | AAGTATGATTTTGCGTTTGC+CGG | + | chr3_3:50813408-50813427 | Msa0456690:intron | 35.0% |
| ! | GTTCAGAAATTGGTTTACGA+TGG | + | chr3_3:50813888-50813907 | Msa0456690:intron | 35.0% |
| TGAAGTAGCTGAAGAATTTG+TGG | + | chr3_3:50813914-50813933 | Msa0456690:CDS | 35.0% | |
| ! | CTAGCATTTACACATCGATT+TGG | + | chr3_3:50814243-50814262 | Msa0456690:intron | 35.0% |
| ! | AGTTAATGGGCATCAAAGAT+AGG | + | chr3_3:50814322-50814341 | Msa0456690:intron | 35.0% |
| ! | GTTAATGGGCATCAAAGATA+GGG | + | chr3_3:50814323-50814342 | Msa0456690:intron | 35.0% |
| ACAATTCAGACAAACCTAAC+AGG | + | chr3_3:50814974-50814993 | Msa0456690:CDS | 35.0% | |
| TTTCAGTTATCACTCCTGTT+AGG | - | chr3_3:50814991-50815010 | None:intergenic | 35.0% | |
| AACAGGAGTGATAACTGAAA+TGG | + | chr3_3:50814991-50815010 | Msa0456690:exon | 35.0% | |
| GGTAAGGAAAAATATGGAGG+AGG | + | chr3_3:50813054-50813073 | Msa0456690:exon | 40.0% | |
| AAAATATGGAGGAGGCTAGA+AGG | + | chr3_3:50813062-50813081 | Msa0456690:exon | 40.0% | |
| !! | AGATGAGTGTCACTTCTGTT+TGG | - | chr3_3:50813088-50813107 | None:intergenic | 40.0% |
| !! | TTGGTGCCACTTCTTCAAAA+TGG | - | chr3_3:50813153-50813172 | None:intergenic | 40.0% |
| !! | TGAGGCTTTGTGTGTCTTTT+TGG | - | chr3_3:50813172-50813191 | None:intergenic | 40.0% |
| TAGGAACAAACCTTCTCTTG+AGG | - | chr3_3:50813286-50813305 | None:intergenic | 40.0% | |
| ! | AGTATGATTTTGCGTTTGCC+GGG | + | chr3_3:50813409-50813428 | Msa0456690:intron | 40.0% |
| ATCAAGCGTTTGTAGTCCAA+CGG | - | chr3_3:50813476-50813495 | None:intergenic | 40.0% | |
| CGTAGACAAACATCATCACA+CGG | + | chr3_3:50813965-50813984 | Msa0456690:CDS | 40.0% | |
| TGTTTACTTTCACCACAGAC+AGG | + | chr3_3:50814713-50814732 | Msa0456690:intron | 40.0% | |
| TTTCACCACAGACAGGAAAA+GGG | + | chr3_3:50814720-50814739 | Msa0456690:intron | 40.0% | |
| ! | ATAAACCCTTTTCCTGTCTG+TGG | - | chr3_3:50814728-50814747 | None:intergenic | 40.0% |
| !! | TGTCGTTATCTGGTTCTATG+TGG | - | chr3_3:50814778-50814797 | None:intergenic | 40.0% |
| TGACTCTCATCACTCTACTA+AGG | + | chr3_3:50814802-50814821 | Msa0456690:CDS | 40.0% | |
| GACTCTCATCACTCTACTAA+GGG | + | chr3_3:50814803-50814822 | Msa0456690:CDS | 40.0% | |
| GGTAAGGAAAAATATGGAGG+AGG | + | chr3_3:50813054-50813073 | Msa0456690:exon | 40.0% | |
| AAAATATGGAGGAGGCTAGA+AGG | + | chr3_3:50813062-50813081 | Msa0456690:exon | 40.0% | |
| !! | AGATGAGTGTCACTTCTGTT+TGG | - | chr3_3:50813088-50813107 | None:intergenic | 40.0% |
| !! | TTGGTGCCACTTCTTCAAAA+TGG | - | chr3_3:50813153-50813172 | None:intergenic | 40.0% |
| !! | TGAGGCTTTGTGTGTCTTTT+TGG | - | chr3_3:50813172-50813191 | None:intergenic | 40.0% |
| TAGGAACAAACCTTCTCTTG+AGG | - | chr3_3:50813286-50813305 | None:intergenic | 40.0% | |
| ! | AGTATGATTTTGCGTTTGCC+GGG | + | chr3_3:50813409-50813428 | Msa0456690:intron | 40.0% |
| ATCAAGCGTTTGTAGTCCAA+CGG | - | chr3_3:50813476-50813495 | None:intergenic | 40.0% | |
| CGTAGACAAACATCATCACA+CGG | + | chr3_3:50813965-50813984 | Msa0456690:CDS | 40.0% | |
| TGTTTACTTTCACCACAGAC+AGG | + | chr3_3:50814713-50814732 | Msa0456690:intron | 40.0% | |
| TTTCACCACAGACAGGAAAA+GGG | + | chr3_3:50814720-50814739 | Msa0456690:intron | 40.0% | |
| ! | ATAAACCCTTTTCCTGTCTG+TGG | - | chr3_3:50814728-50814747 | None:intergenic | 40.0% |
| !! | TGTCGTTATCTGGTTCTATG+TGG | - | chr3_3:50814778-50814797 | None:intergenic | 40.0% |
| TGACTCTCATCACTCTACTA+AGG | + | chr3_3:50814802-50814821 | Msa0456690:CDS | 40.0% | |
| GACTCTCATCACTCTACTAA+GGG | + | chr3_3:50814803-50814822 | Msa0456690:CDS | 40.0% | |
| TGGATGCTTCTTCTTCAGCT+GGG | - | chr3_3:50813111-50813130 | None:intergenic | 45.0% | |
| ATGGATGCTTCTTCTTCAGC+TGG | - | chr3_3:50813112-50813131 | None:intergenic | 45.0% | |
| GAAGCATACTCACTACGTTG+AGG | - | chr3_3:50813190-50813209 | None:intergenic | 45.0% | |
| AAGGCAATTATCCTGACCGT+TGG | + | chr3_3:50813457-50813476 | Msa0456690:intron | 45.0% | |
| CTAGAGATGGTAAAGCGAGT+TGG | + | chr3_3:50814461-50814480 | Msa0456690:intron | 45.0% | |
| CTTTCACCACAGACAGGAAA+AGG | + | chr3_3:50814719-50814738 | Msa0456690:intron | 45.0% | |
| ! | GAGTCATGAGTGTCGTTATC+TGG | - | chr3_3:50814788-50814807 | None:intergenic | 45.0% |
| CAATCCAGCAACCAATGACT+GGG | + | chr3_3:50814826-50814845 | Msa0456690:CDS | 45.0% | |
| AATACCTCACTGAAAGGAGC+TGG | - | chr3_3:50814854-50814873 | None:intergenic | 45.0% | |
| TGGATGCTTCTTCTTCAGCT+GGG | - | chr3_3:50813111-50813130 | None:intergenic | 45.0% | |
| ATGGATGCTTCTTCTTCAGC+TGG | - | chr3_3:50813112-50813131 | None:intergenic | 45.0% | |
| GAAGCATACTCACTACGTTG+AGG | - | chr3_3:50813190-50813209 | None:intergenic | 45.0% | |
| AAGGCAATTATCCTGACCGT+TGG | + | chr3_3:50813457-50813476 | Msa0456690:intron | 45.0% | |
| CTAGAGATGGTAAAGCGAGT+TGG | + | chr3_3:50814461-50814480 | Msa0456690:intron | 45.0% | |
| CTTTCACCACAGACAGGAAA+AGG | + | chr3_3:50814719-50814738 | Msa0456690:intron | 45.0% | |
| ! | GAGTCATGAGTGTCGTTATC+TGG | - | chr3_3:50814788-50814807 | None:intergenic | 45.0% |
| CAATCCAGCAACCAATGACT+GGG | + | chr3_3:50814826-50814845 | Msa0456690:CDS | 45.0% | |
| AATACCTCACTGAAAGGAGC+TGG | - | chr3_3:50814854-50814873 | None:intergenic | 45.0% | |
| TGCCTTCCAAGCAATAGACC+CGG | - | chr3_3:50813443-50813462 | None:intergenic | 50.0% | |
| ATGGGCATCAAAGATAGGGC+TGG | + | chr3_3:50814327-50814346 | Msa0456690:intron | 50.0% | |
| TCAAAGATAGGGCTGGATCG+AGG | + | chr3_3:50814334-50814353 | Msa0456690:intron | 50.0% | |
| CAAAGATAGGGCTGGATCGA+GGG | + | chr3_3:50814335-50814354 | Msa0456690:intron | 50.0% | |
| GCAATCCAGCAACCAATGAC+TGG | + | chr3_3:50814825-50814844 | Msa0456690:CDS | 50.0% | |
| TGCCTTCCAAGCAATAGACC+CGG | - | chr3_3:50813443-50813462 | None:intergenic | 50.0% | |
| ATGGGCATCAAAGATAGGGC+TGG | + | chr3_3:50814327-50814346 | Msa0456690:intron | 50.0% | |
| TCAAAGATAGGGCTGGATCG+AGG | + | chr3_3:50814334-50814353 | Msa0456690:intron | 50.0% | |
| CAAAGATAGGGCTGGATCGA+GGG | + | chr3_3:50814335-50814354 | Msa0456690:intron | 50.0% | |
| GCAATCCAGCAACCAATGAC+TGG | + | chr3_3:50814825-50814844 | Msa0456690:CDS | 50.0% | |
| TCGAACCCGGGTCTATTGCT+TGG | + | chr3_3:50813434-50813453 | Msa0456690:intron | 55.0% | |
| ACCCGGGTCTATTGCTTGGA+AGG | + | chr3_3:50813438-50813457 | Msa0456690:intron | 55.0% | |
| GCCTTCCAAGCAATAGACCC+GGG | - | chr3_3:50813442-50813461 | None:intergenic | 55.0% | |
| GCGTTTGTAGTCCAACGGTC+AGG | - | chr3_3:50813471-50813490 | None:intergenic | 55.0% | |
| ! | GGAACCCAGTCATTGGTTGC+TGG | - | chr3_3:50814833-50814852 | None:intergenic | 55.0% |
| AGGAGCTGGAACCCAGTCAT+TGG | - | chr3_3:50814840-50814859 | None:intergenic | 55.0% | |
| GGTTCCAGCTCCTTTCAGTG+AGG | + | chr3_3:50814847-50814866 | Msa0456690:CDS | 55.0% | |
| TCGAACCCGGGTCTATTGCT+TGG | + | chr3_3:50813434-50813453 | Msa0456690:intron | 55.0% | |
| ACCCGGGTCTATTGCTTGGA+AGG | + | chr3_3:50813438-50813457 | Msa0456690:intron | 55.0% | |
| GCCTTCCAAGCAATAGACCC+GGG | - | chr3_3:50813442-50813461 | None:intergenic | 55.0% | |
| GCGTTTGTAGTCCAACGGTC+AGG | - | chr3_3:50813471-50813490 | None:intergenic | 55.0% | |
| ! | GGAACCCAGTCATTGGTTGC+TGG | - | chr3_3:50814833-50814852 | None:intergenic | 55.0% |
| AGGAGCTGGAACCCAGTCAT+TGG | - | chr3_3:50814840-50814859 | None:intergenic | 55.0% | |
| GGTTCCAGCTCCTTTCAGTG+AGG | + | chr3_3:50814847-50814866 | Msa0456690:CDS | 55.0% | |
| ATAGACCCGGGTTCGACTCC+CGG | - | chr3_3:50813430-50813449 | None:intergenic | 60.0% | |
| GGGCTGGATCGAGGGTCTAT+CGG | + | chr3_3:50814343-50814362 | Msa0456690:intron | 60.0% | |
| CGAGGGTCTATCGGTGTGTC+TGG | + | chr3_3:50814352-50814371 | Msa0456690:intron | 60.0% | |
| AAAAGGGACGGGCCCAAGTG+TGG | - | chr3_3:50814490-50814509 | None:intergenic | 60.0% | |
| ATAGACCCGGGTTCGACTCC+CGG | - | chr3_3:50813430-50813449 | None:intergenic | 60.0% | |
| GGGCTGGATCGAGGGTCTAT+CGG | + | chr3_3:50814343-50814362 | Msa0456690:intron | 60.0% | |
| CGAGGGTCTATCGGTGTGTC+TGG | + | chr3_3:50814352-50814371 | Msa0456690:intron | 60.0% | |
| AAAAGGGACGGGCCCAAGTG+TGG | - | chr3_3:50814490-50814509 | None:intergenic | 60.0% | |
| CGTTTGCCGGGAGTCGAACC+CGG | + | chr3_3:50813421-50813440 | Msa0456690:intron | 65.0% | |
| GTTTGCCGGGAGTCGAACCC+GGG | + | chr3_3:50813422-50813441 | Msa0456690:intron | 65.0% | |
| ! | AGCGAGTTGGCCGCCACACT+TGG | + | chr3_3:50814474-50814493 | Msa0456690:intron | 65.0% |
| ! | GCGAGTTGGCCGCCACACTT+GGG | + | chr3_3:50814475-50814494 | Msa0456690:intron | 65.0% |
| CGTTTGCCGGGAGTCGAACC+CGG | + | chr3_3:50813421-50813440 | Msa0456690:intron | 65.0% | |
| GTTTGCCGGGAGTCGAACCC+GGG | + | chr3_3:50813422-50813441 | Msa0456690:intron | 65.0% | |
| ! | AGCGAGTTGGCCGCCACACT+TGG | + | chr3_3:50814474-50814493 | Msa0456690:intron | 65.0% |
| ! | GCGAGTTGGCCGCCACACTT+GGG | + | chr3_3:50814475-50814494 | Msa0456690:intron | 65.0% |
| AGGGACGGGCCCAAGTGTGG+CGG | - | chr3_3:50814487-50814506 | None:intergenic | 70.0% | |
| AGGGACGGGCCCAAGTGTGG+CGG | - | chr3_3:50814487-50814506 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 50812992 | 50815153 | 50812992 | ID=Msa0456690;Name=Msa0456690 |
| chr3_3 | mRNA | 50812992 | 50815153 | 50812992 | ID=Msa0456690-mRNA-1;Parent=Msa0456690;Name=Msa0456690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|4|145|166 |
| chr3_3 | exon | 50812992 | 50813294 | 50812992 | ID=Msa0456690-mRNA-1:exon:9679;Parent=Msa0456690-mRNA-1 |
| chr3_3 | exon | 50813894 | 50813986 | 50813894 | ID=Msa0456690-mRNA-1:exon:9680;Parent=Msa0456690-mRNA-1 |
| chr3_3 | exon | 50814731 | 50814868 | 50814731 | ID=Msa0456690-mRNA-1:exon:9681;Parent=Msa0456690-mRNA-1 |
| chr3_3 | exon | 50814967 | 50815153 | 50814967 | ID=Msa0456690-mRNA-1:exon:9682;Parent=Msa0456690-mRNA-1 |
| chr3_3 | five_prime_UTR | 50812992 | 50813066 | 50812992 | ID=Msa0456690-mRNA-1:five_prime_utr;Parent=Msa0456690-mRNA-1 |
| chr3_3 | CDS | 50813067 | 50813294 | 50813067 | ID=Msa0456690-mRNA-1:cds;Parent=Msa0456690-mRNA-1 |
| chr3_3 | CDS | 50813894 | 50813986 | 50813894 | ID=Msa0456690-mRNA-1:cds;Parent=Msa0456690-mRNA-1 |
| chr3_3 | CDS | 50814731 | 50814868 | 50814731 | ID=Msa0456690-mRNA-1:cds;Parent=Msa0456690-mRNA-1 |
| chr3_3 | CDS | 50814967 | 50815008 | 50814967 | ID=Msa0456690-mRNA-1:cds;Parent=Msa0456690-mRNA-1 |
| chr3_3 | three_prime_UTR | 50815009 | 50815153 | 50815009 | ID=Msa0456690-mRNA-1:three_prime_utr;Parent=Msa0456690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
