Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364710 | XP_013460118.1 | 96.341 | 164 | 6 | 0 | 2 | 165 | 3 | 166 | 3.04e-113 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364710 | B7FGG7 | 96.341 | 164 | 6 | 0 | 2 | 165 | 3 | 166 | 1.45e-113 | 328 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364710 | Msa0456690 | 0.963351 | 5.593080e-122 | -8.615850e-47 |
| Msa0364710 | Msa0504020 | 0.815749 | 7.883796e-52 | -8.615850e-47 |
| Msa0364710 | Msa0959480 | 0.810768 | 9.781489e-51 | -8.615850e-47 |
| Msa0280730 | Msa0364710 | 0.803183 | 3.936971e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364710 | MtrunA17_Chr3g0103711 | 96.341 | 164 | 6 | 0 | 2 | 165 | 3 | 166 | 2.80e-117 | 328 |
| Msa0364710 | MtrunA17_Chr5g0401701 | 38.596 | 171 | 91 | 6 | 5 | 165 | 10 | 176 | 8.03e-27 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364710 | AT4G37300.1 | 39.205 | 176 | 92 | 6 | 1 | 165 | 1 | 172 | 2.61e-26 | 98.6 |
Find 30 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATATTTATATTTATT+TGG | 0.092683 | 3_1:-58160538 | None:intergenic |
| CGTTGAAATTGTAGCATTTC+AGG | 0.143934 | 3_1:-58158693 | None:intergenic |
| TTGGTGCCACTTCTTCAAAA+TGG | 0.336944 | 3_1:-58158596 | None:intergenic |
| CTTTCACCACAGACAGGAAA+AGG | 0.363878 | 3_1:+58160161 | Msa0364710:intron |
| TTTCAGTTATCACTCCTGTT+AGG | 0.372318 | 3_1:-58160430 | None:intergenic |
| GAGTCATGAGTGTCGTTATC+TGG | 0.392302 | 3_1:-58160227 | None:intergenic |
| GGAACCCAGTCATTGGTTGC+TGG | 0.416375 | 3_1:-58160272 | None:intergenic |
| AGATGAGTGTCACTTCTGTT+TGG | 0.417853 | 3_1:-58158531 | None:intergenic |
| TGAAGTAGCTGAAGAATTTG+TGG | 0.418411 | 3_1:+58159358 | Msa0364710:CDS |
| ACAATTCAGACAAACCTAAC+AGG | 0.431560 | 3_1:+58160416 | Msa0364710:CDS |
| GCAATCCAGCAACCAATGAC+TGG | 0.433217 | 3_1:+58160267 | Msa0364710:CDS |
| AACAGGAGTGATAACTGAAA+TGG | 0.456626 | 3_1:+58160433 | Msa0364710:exon |
| TGACTCTCATCACTCTACTA+AGG | 0.462846 | 3_1:+58160244 | Msa0364710:CDS |
| TTAGAAAAGAGAAGAAGGTA+AGG | 0.470909 | 3_1:+58158486 | Msa0364710:five_prime_UTR |
| TTTGTTCAAGGTTATTGTGT+TGG | 0.481796 | 3_1:+58160564 | Msa0364710:three_prime_UTR |
| AGGAGCTGGAACCCAGTCAT+TGG | 0.486673 | 3_1:-58160279 | None:intergenic |
| TTATTGTGTTGGAATATTCA+CGG | 0.502221 | 3_1:+58160575 | Msa0364710:three_prime_UTR |
| CAAGCTTAGAAAAGAGAAGA+AGG | 0.503021 | 3_1:+58158481 | Msa0364710:five_prime_UTR |
| GTTCAGAAATTGGTTTACGA+TGG | 0.533628 | 3_1:+58159332 | Msa0364710:intron |
| AATACCTCACTGAAAGGAGC+TGG | 0.537040 | 3_1:-58160293 | None:intergenic |
| GACTCTCATCACTCTACTAA+GGG | 0.542573 | 3_1:+58160245 | Msa0364710:CDS |
| TTTCACCACAGACAGGAAAA+GGG | 0.552205 | 3_1:+58160162 | Msa0364710:intron |
| TGAAAATGATCCTCAAGAGA+AGG | 0.574785 | 3_1:+58158719 | Msa0364710:CDS |
| TAGGAACAAACCTTCTCTTG+AGG | 0.587802 | 3_1:-58158729 | None:intergenic |
| CAATCCAGCAACCAATGACT+GGG | 0.590043 | 3_1:+58160268 | Msa0364710:CDS |
| ATGTAAAATACCTCACTGAA+AGG | 0.593015 | 3_1:-58160299 | None:intergenic |
| GGTTCCAGCTCCTTTCAGTG+AGG | 0.664768 | 3_1:+58160289 | Msa0364710:CDS |
| TGTCGTTATCTGGTTCTATG+TGG | 0.665597 | 3_1:-58160217 | None:intergenic |
| CGTAGACAAACATCATCACA+CGG | 0.672277 | 3_1:+58159409 | Msa0364710:CDS |
| GAAGCATACTCACTACGTTG+AGG | 0.680375 | 3_1:-58158633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATTAAATAGAAAGT+GGG | - | chr3_1:58158955-58158974 | None:intergenic | 10.0% |
| !! | TTAATATATTAAATAGAAAG+TGG | - | chr3_1:58158956-58158975 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTTTTGAAACAA+CGG | + | chr3_1:58159035-58159054 | Msa0364710:intron | 10.0% |
| !! | TAGAAATTAGAAAATAAAAT+AGG | - | chr3_1:58159570-58159589 | None:intergenic | 10.0% |
| !!! | TTTTATTTTCTAATTTCTAA+TGG | + | chr3_1:58159571-58159590 | Msa0364710:intron | 10.0% |
| !!! | AATATAAAGTTTTTTTTTGA+AGG | - | chr3_1:58159620-58159639 | None:intergenic | 10.0% |
| !!! | TATTAATATAATGGATAAAA+GGG | - | chr3_1:58159950-58159969 | None:intergenic | 10.0% |
| !!! | TTATTAATATAATGGATAAA+AGG | - | chr3_1:58159951-58159970 | None:intergenic | 10.0% |
| !! | ATAAGATTTATTAACTAAAA+TGG | - | chr3_1:58159976-58159995 | None:intergenic | 10.0% |
| !! | CACAAATATTTATATTTATT+TGG | - | chr3_1:58160541-58160560 | None:intergenic | 10.0% |
| !! | TAATATATTAAATAGAAAGT+GGG | - | chr3_1:58158955-58158974 | None:intergenic | 10.0% |
| !! | TTAATATATTAAATAGAAAG+TGG | - | chr3_1:58158956-58158975 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTTTTGAAACAA+CGG | + | chr3_1:58159035-58159054 | Msa0364710:intron | 10.0% |
| !! | TAGAAATTAGAAAATAAAAT+AGG | - | chr3_1:58159570-58159589 | None:intergenic | 10.0% |
| !!! | TTTTATTTTCTAATTTCTAA+TGG | + | chr3_1:58159571-58159590 | Msa0364710:intron | 10.0% |
| !!! | AATATAAAGTTTTTTTTTGA+AGG | - | chr3_1:58159620-58159639 | None:intergenic | 10.0% |
| !!! | TATTAATATAATGGATAAAA+GGG | - | chr3_1:58159950-58159969 | None:intergenic | 10.0% |
| !!! | TTATTAATATAATGGATAAA+AGG | - | chr3_1:58159951-58159970 | None:intergenic | 10.0% |
| !! | ATAAGATTTATTAACTAAAA+TGG | - | chr3_1:58159976-58159995 | None:intergenic | 10.0% |
| !! | CACAAATATTTATATTTATT+TGG | - | chr3_1:58160541-58160560 | None:intergenic | 10.0% |
| !!! | TATTTAACTTATTATGAAAC+TGG | - | chr3_1:58158796-58158815 | None:intergenic | 15.0% |
| !!! | AAATGGTCTTATTAATATAA+TGG | - | chr3_1:58159959-58159978 | None:intergenic | 15.0% |
| !!! | TATTTAACTTATTATGAAAC+TGG | - | chr3_1:58158796-58158815 | None:intergenic | 15.0% |
| !!! | AAATGGTCTTATTAATATAA+TGG | - | chr3_1:58159959-58159978 | None:intergenic | 15.0% |
| !! | ATGTTGACCAAAAAAATTAA+AGG | + | chr3_1:58159073-58159092 | Msa0364710:intron | 20.0% |
| !!! | ATCATCACCTTTAATTTTTT+TGG | - | chr3_1:58159083-58159102 | None:intergenic | 20.0% |
| !! | AGACAATTATATCAACAATT+TGG | - | chr3_1:58159195-58159214 | None:intergenic | 20.0% |
| !! | AAAAATAATACTAGTCAAGT+AGG | - | chr3_1:58159449-58159468 | None:intergenic | 20.0% |
| !!! | TATTTTCTAATTTCTAATGG+AGG | + | chr3_1:58159574-58159593 | Msa0364710:intron | 20.0% |
| !!! | ATTTTCTAATTTCTAATGGA+GGG | + | chr3_1:58159575-58159594 | Msa0364710:intron | 20.0% |
| !! | ATCTATTAAATATGATTCGT+TGG | - | chr3_1:58159652-58159671 | None:intergenic | 20.0% |
| !!! | CTCATATTAAATGTTTTCTA+AGG | - | chr3_1:58160050-58160069 | None:intergenic | 20.0% |
| !! | ATTGAGAAAATAATAGCATT+TGG | + | chr3_1:58160105-58160124 | Msa0364710:intron | 20.0% |
| !!! | CTTTGATTTGAATATGTTTT+AGG | + | chr3_1:58160387-58160406 | Msa0364710:intron | 20.0% |
| !!! | AGAAATTTTATTTCAGATTG+TGG | + | chr3_1:58160486-58160505 | Msa0364710:three_prime_UTR | 20.0% |
| !!! | GAAATTTTATTTCAGATTGT+GGG | + | chr3_1:58160487-58160506 | Msa0364710:three_prime_UTR | 20.0% |
| !!! | ATATTTGTGATTTTTGTTCA+AGG | + | chr3_1:58160552-58160571 | Msa0364710:three_prime_UTR | 20.0% |
| !! | ATGTTGACCAAAAAAATTAA+AGG | + | chr3_1:58159073-58159092 | Msa0364710:intron | 20.0% |
| !!! | ATCATCACCTTTAATTTTTT+TGG | - | chr3_1:58159083-58159102 | None:intergenic | 20.0% |
| !! | AGACAATTATATCAACAATT+TGG | - | chr3_1:58159195-58159214 | None:intergenic | 20.0% |
| !! | AAAAATAATACTAGTCAAGT+AGG | - | chr3_1:58159449-58159468 | None:intergenic | 20.0% |
| !!! | TATTTTCTAATTTCTAATGG+AGG | + | chr3_1:58159574-58159593 | Msa0364710:intron | 20.0% |
| !!! | ATTTTCTAATTTCTAATGGA+GGG | + | chr3_1:58159575-58159594 | Msa0364710:intron | 20.0% |
| !! | ATCTATTAAATATGATTCGT+TGG | - | chr3_1:58159652-58159671 | None:intergenic | 20.0% |
| !!! | CTCATATTAAATGTTTTCTA+AGG | - | chr3_1:58160050-58160069 | None:intergenic | 20.0% |
| !! | ATTGAGAAAATAATAGCATT+TGG | + | chr3_1:58160105-58160124 | Msa0364710:intron | 20.0% |
| !!! | CTTTGATTTGAATATGTTTT+AGG | + | chr3_1:58160387-58160406 | Msa0364710:intron | 20.0% |
| !!! | AGAAATTTTATTTCAGATTG+TGG | + | chr3_1:58160486-58160505 | Msa0364710:three_prime_UTR | 20.0% |
| !!! | GAAATTTTATTTCAGATTGT+GGG | + | chr3_1:58160487-58160506 | Msa0364710:three_prime_UTR | 20.0% |
| !!! | ATATTTGTGATTTTTGTTCA+AGG | + | chr3_1:58160552-58160571 | Msa0364710:three_prime_UTR | 20.0% |
| ! | AAGAAGGTAAGGAAAAAAAA+TGG | + | chr3_1:58158497-58158516 | Msa0364710:exon | 25.0% |
| !! | GAGATAATTGACTTACAAAT+AGG | - | chr3_1:58159146-58159165 | None:intergenic | 25.0% |
| ! | CATAATTGTGGAATGAAAAA+GGG | - | chr3_1:58159313-58159332 | None:intergenic | 25.0% |
| ! | ACATAATTGTGGAATGAAAA+AGG | - | chr3_1:58159314-58159333 | None:intergenic | 25.0% |
| ! | AGAAAGACACAAAAAGTTAA+TGG | + | chr3_1:58159752-58159771 | Msa0364710:intron | 25.0% |
| ! | GAAAGACACAAAAAGTTAAT+GGG | + | chr3_1:58159753-58159772 | Msa0364710:intron | 25.0% |
| ! | TTAGAATTATTGTCTAGAGA+TGG | + | chr3_1:58159892-58159911 | Msa0364710:intron | 25.0% |
| !!! | AATATAATGGATAAAAGGGA+CGG | - | chr3_1:58159946-58159965 | None:intergenic | 25.0% |
| !!! | TGATTTGAATATGTTTTAGG+AGG | + | chr3_1:58160390-58160409 | Msa0364710:intron | 25.0% |
| ! | AAGAAGGTAAGGAAAAAAAA+TGG | + | chr3_1:58158497-58158516 | Msa0364710:exon | 25.0% |
| !! | GAGATAATTGACTTACAAAT+AGG | - | chr3_1:58159146-58159165 | None:intergenic | 25.0% |
| ! | CATAATTGTGGAATGAAAAA+GGG | - | chr3_1:58159313-58159332 | None:intergenic | 25.0% |
| ! | ACATAATTGTGGAATGAAAA+AGG | - | chr3_1:58159314-58159333 | None:intergenic | 25.0% |
| ! | AGAAAGACACAAAAAGTTAA+TGG | + | chr3_1:58159752-58159771 | Msa0364710:intron | 25.0% |
| ! | GAAAGACACAAAAAGTTAAT+GGG | + | chr3_1:58159753-58159772 | Msa0364710:intron | 25.0% |
| ! | TTAGAATTATTGTCTAGAGA+TGG | + | chr3_1:58159892-58159911 | Msa0364710:intron | 25.0% |
| !!! | AATATAATGGATAAAAGGGA+CGG | - | chr3_1:58159946-58159965 | None:intergenic | 25.0% |
| !!! | TGATTTGAATATGTTTTAGG+AGG | + | chr3_1:58160390-58160409 | Msa0364710:intron | 25.0% |
| TTAGAAAAGAGAAGAAGGTA+AGG | + | chr3_1:58158486-58158505 | Msa0364710:five_prime_UTR | 30.0% | |
| AAGGTAAGGAAAAAAAATGG+AGG | + | chr3_1:58158500-58158519 | Msa0364710:exon | 30.0% | |
| ! | GAGGAAAAACATTGTGTTTT+AGG | - | chr3_1:58158751-58158770 | None:intergenic | 30.0% |
| CGTGGAAATAAAACTTTAAG+AGG | - | chr3_1:58158770-58158789 | None:intergenic | 30.0% | |
| TTATTATGAAACTGGAAACG+TGG | - | chr3_1:58158788-58158807 | None:intergenic | 30.0% | |
| GGAATGAAAAAGGGAAAAAA+AGG | - | chr3_1:58159304-58159323 | None:intergenic | 30.0% | |
| CCAATTTCTGAACATAATTG+TGG | - | chr3_1:58159325-58159344 | None:intergenic | 30.0% | |
| CCACAATTATGTTCAGAAAT+TGG | + | chr3_1:58159322-58159341 | Msa0364710:intron | 30.0% | |
| TAATACTAGTCAAGTAGGAA+TGG | - | chr3_1:58159444-58159463 | None:intergenic | 30.0% | |
| CAACAAAGTATGTACATGAA+TGG | - | chr3_1:58159501-58159520 | None:intergenic | 30.0% | |
| TAAATGCTAGATGCAAATCT+AGG | - | chr3_1:58159677-58159696 | None:intergenic | 30.0% | |
| !! | ATATAATGGATAAAAGGGAC+GGG | - | chr3_1:58159945-58159964 | None:intergenic | 30.0% |
| ATGTAAAATACCTCACTGAA+AGG | - | chr3_1:58160302-58160321 | None:intergenic | 30.0% | |
| TTTGTTCAAGGTTATTGTGT+TGG | + | chr3_1:58160564-58160583 | Msa0364710:three_prime_UTR | 30.0% | |
| TTAGAAAAGAGAAGAAGGTA+AGG | + | chr3_1:58158486-58158505 | Msa0364710:five_prime_UTR | 30.0% | |
| AAGGTAAGGAAAAAAAATGG+AGG | + | chr3_1:58158500-58158519 | Msa0364710:exon | 30.0% | |
| ! | GAGGAAAAACATTGTGTTTT+AGG | - | chr3_1:58158751-58158770 | None:intergenic | 30.0% |
| CGTGGAAATAAAACTTTAAG+AGG | - | chr3_1:58158770-58158789 | None:intergenic | 30.0% | |
| TTATTATGAAACTGGAAACG+TGG | - | chr3_1:58158788-58158807 | None:intergenic | 30.0% | |
| GGAATGAAAAAGGGAAAAAA+AGG | - | chr3_1:58159304-58159323 | None:intergenic | 30.0% | |
| CCAATTTCTGAACATAATTG+TGG | - | chr3_1:58159325-58159344 | None:intergenic | 30.0% | |
| CCACAATTATGTTCAGAAAT+TGG | + | chr3_1:58159322-58159341 | Msa0364710:intron | 30.0% | |
| TAATACTAGTCAAGTAGGAA+TGG | - | chr3_1:58159444-58159463 | None:intergenic | 30.0% | |
| CAACAAAGTATGTACATGAA+TGG | - | chr3_1:58159501-58159520 | None:intergenic | 30.0% | |
| TAAATGCTAGATGCAAATCT+AGG | - | chr3_1:58159677-58159696 | None:intergenic | 30.0% | |
| !! | ATATAATGGATAAAAGGGAC+GGG | - | chr3_1:58159945-58159964 | None:intergenic | 30.0% |
| ATGTAAAATACCTCACTGAA+AGG | - | chr3_1:58160302-58160321 | None:intergenic | 30.0% | |
| TTTGTTCAAGGTTATTGTGT+TGG | + | chr3_1:58160564-58160583 | Msa0364710:three_prime_UTR | 30.0% | |
| CAAGCTTAGAAAAGAGAAGA+AGG | + | chr3_1:58158481-58158500 | Msa0364710:five_prime_UTR | 35.0% | |
| GAAAAAAAATGGAGGCTAGA+AGG | + | chr3_1:58158508-58158527 | Msa0364710:exon | 35.0% | |
| !!! | GTGTCTTGTTTTTGCTTCTA+TGG | - | chr3_1:58158577-58158596 | None:intergenic | 35.0% |
| !! | AAGACACCATTTTGAAGAAG+TGG | + | chr3_1:58158590-58158609 | Msa0364710:CDS | 35.0% |
| CGTTGAAATTGTAGCATTTC+AGG | - | chr3_1:58158696-58158715 | None:intergenic | 35.0% | |
| TGAAAATGATCCTCAAGAGA+AGG | + | chr3_1:58158719-58158738 | Msa0364710:CDS | 35.0% | |
| ACTACTAGTAGTAATGCCTT+TGG | + | chr3_1:58159119-58159138 | Msa0364710:intron | 35.0% | |
| TGACTTACAAATAGGACCAA+AGG | - | chr3_1:58159138-58159157 | None:intergenic | 35.0% | |
| ! | GTTCAGAAATTGGTTTACGA+TGG | + | chr3_1:58159332-58159351 | Msa0364710:intron | 35.0% |
| TGAAGTAGCTGAAGAATTTG+TGG | + | chr3_1:58159358-58159377 | Msa0364710:CDS | 35.0% | |
| ! | CTAGCATTTACACATCGATT+TGG | + | chr3_1:58159687-58159706 | Msa0364710:intron | 35.0% |
| ! | AGTTAATGGGCATCAAAGAT+AGG | + | chr3_1:58159766-58159785 | Msa0364710:intron | 35.0% |
| ! | GTTAATGGGCATCAAAGATA+GGG | + | chr3_1:58159767-58159786 | Msa0364710:intron | 35.0% |
| ACAATTCAGACAAACCTAAC+AGG | + | chr3_1:58160416-58160435 | Msa0364710:CDS | 35.0% | |
| TTTCAGTTATCACTCCTGTT+AGG | - | chr3_1:58160433-58160452 | None:intergenic | 35.0% | |
| AACAGGAGTGATAACTGAAA+TGG | + | chr3_1:58160433-58160452 | Msa0364710:exon | 35.0% | |
| CAAGCTTAGAAAAGAGAAGA+AGG | + | chr3_1:58158481-58158500 | Msa0364710:five_prime_UTR | 35.0% | |
| GAAAAAAAATGGAGGCTAGA+AGG | + | chr3_1:58158508-58158527 | Msa0364710:exon | 35.0% | |
| !!! | GTGTCTTGTTTTTGCTTCTA+TGG | - | chr3_1:58158577-58158596 | None:intergenic | 35.0% |
| !! | AAGACACCATTTTGAAGAAG+TGG | + | chr3_1:58158590-58158609 | Msa0364710:CDS | 35.0% |
| CGTTGAAATTGTAGCATTTC+AGG | - | chr3_1:58158696-58158715 | None:intergenic | 35.0% | |
| TGAAAATGATCCTCAAGAGA+AGG | + | chr3_1:58158719-58158738 | Msa0364710:CDS | 35.0% | |
| ACTACTAGTAGTAATGCCTT+TGG | + | chr3_1:58159119-58159138 | Msa0364710:intron | 35.0% | |
| TGACTTACAAATAGGACCAA+AGG | - | chr3_1:58159138-58159157 | None:intergenic | 35.0% | |
| ! | GTTCAGAAATTGGTTTACGA+TGG | + | chr3_1:58159332-58159351 | Msa0364710:intron | 35.0% |
| TGAAGTAGCTGAAGAATTTG+TGG | + | chr3_1:58159358-58159377 | Msa0364710:CDS | 35.0% | |
| ! | CTAGCATTTACACATCGATT+TGG | + | chr3_1:58159687-58159706 | Msa0364710:intron | 35.0% |
| ! | AGTTAATGGGCATCAAAGAT+AGG | + | chr3_1:58159766-58159785 | Msa0364710:intron | 35.0% |
| ! | GTTAATGGGCATCAAAGATA+GGG | + | chr3_1:58159767-58159786 | Msa0364710:intron | 35.0% |
| ACAATTCAGACAAACCTAAC+AGG | + | chr3_1:58160416-58160435 | Msa0364710:CDS | 35.0% | |
| TTTCAGTTATCACTCCTGTT+AGG | - | chr3_1:58160433-58160452 | None:intergenic | 35.0% | |
| AACAGGAGTGATAACTGAAA+TGG | + | chr3_1:58160433-58160452 | Msa0364710:exon | 35.0% | |
| !! | AGATGAGTGTCACTTCTGTT+TGG | - | chr3_1:58158534-58158553 | None:intergenic | 40.0% |
| !! | TTGGTGCCACTTCTTCAAAA+TGG | - | chr3_1:58158599-58158618 | None:intergenic | 40.0% |
| !! | TGAGGCTTTGTGTGTCTTTT+TGG | - | chr3_1:58158618-58158637 | None:intergenic | 40.0% |
| TAGGAACAAACCTTCTCTTG+AGG | - | chr3_1:58158732-58158751 | None:intergenic | 40.0% | |
| ! | CAGTATGATTTTGCGTTTGC+CGG | + | chr3_1:58158854-58158873 | Msa0364710:intron | 40.0% |
| ! | AGTATGATTTTGCGTTTGCC+GGG | + | chr3_1:58158855-58158874 | Msa0364710:intron | 40.0% |
| ATCAAGCGTTTGTAGTCCAA+CGG | - | chr3_1:58158922-58158941 | None:intergenic | 40.0% | |
| CGTAGACAAACATCATCACA+CGG | + | chr3_1:58159409-58159428 | Msa0364710:CDS | 40.0% | |
| TGTTTACTTTCACCACAGAC+AGG | + | chr3_1:58160155-58160174 | Msa0364710:intron | 40.0% | |
| TTTCACCACAGACAGGAAAA+GGG | + | chr3_1:58160162-58160181 | Msa0364710:intron | 40.0% | |
| ! | ATAAACCCTTTTCCTGTCTG+TGG | - | chr3_1:58160170-58160189 | None:intergenic | 40.0% |
| !! | TGTCGTTATCTGGTTCTATG+TGG | - | chr3_1:58160220-58160239 | None:intergenic | 40.0% |
| TGACTCTCATCACTCTACTA+AGG | + | chr3_1:58160244-58160263 | Msa0364710:CDS | 40.0% | |
| GACTCTCATCACTCTACTAA+GGG | + | chr3_1:58160245-58160264 | Msa0364710:CDS | 40.0% | |
| !! | AGATGAGTGTCACTTCTGTT+TGG | - | chr3_1:58158534-58158553 | None:intergenic | 40.0% |
| !! | TTGGTGCCACTTCTTCAAAA+TGG | - | chr3_1:58158599-58158618 | None:intergenic | 40.0% |
| !! | TGAGGCTTTGTGTGTCTTTT+TGG | - | chr3_1:58158618-58158637 | None:intergenic | 40.0% |
| TAGGAACAAACCTTCTCTTG+AGG | - | chr3_1:58158732-58158751 | None:intergenic | 40.0% | |
| ! | CAGTATGATTTTGCGTTTGC+CGG | + | chr3_1:58158854-58158873 | Msa0364710:intron | 40.0% |
| ! | AGTATGATTTTGCGTTTGCC+GGG | + | chr3_1:58158855-58158874 | Msa0364710:intron | 40.0% |
| ATCAAGCGTTTGTAGTCCAA+CGG | - | chr3_1:58158922-58158941 | None:intergenic | 40.0% | |
| CGTAGACAAACATCATCACA+CGG | + | chr3_1:58159409-58159428 | Msa0364710:CDS | 40.0% | |
| TGTTTACTTTCACCACAGAC+AGG | + | chr3_1:58160155-58160174 | Msa0364710:intron | 40.0% | |
| TTTCACCACAGACAGGAAAA+GGG | + | chr3_1:58160162-58160181 | Msa0364710:intron | 40.0% | |
| ! | ATAAACCCTTTTCCTGTCTG+TGG | - | chr3_1:58160170-58160189 | None:intergenic | 40.0% |
| !! | TGTCGTTATCTGGTTCTATG+TGG | - | chr3_1:58160220-58160239 | None:intergenic | 40.0% |
| TGACTCTCATCACTCTACTA+AGG | + | chr3_1:58160244-58160263 | Msa0364710:CDS | 40.0% | |
| GACTCTCATCACTCTACTAA+GGG | + | chr3_1:58160245-58160264 | Msa0364710:CDS | 40.0% | |
| GAAGCATACTCACTACGTTG+AGG | - | chr3_1:58158636-58158655 | None:intergenic | 45.0% | |
| AAGGCAATTATCCTGACCGT+TGG | + | chr3_1:58158903-58158922 | Msa0364710:intron | 45.0% | |
| CTAGAGATGGTAAAGCGAGT+TGG | + | chr3_1:58159905-58159924 | Msa0364710:intron | 45.0% | |
| CTTTCACCACAGACAGGAAA+AGG | + | chr3_1:58160161-58160180 | Msa0364710:intron | 45.0% | |
| ! | GAGTCATGAGTGTCGTTATC+TGG | - | chr3_1:58160230-58160249 | None:intergenic | 45.0% |
| CAATCCAGCAACCAATGACT+GGG | + | chr3_1:58160268-58160287 | Msa0364710:CDS | 45.0% | |
| AATACCTCACTGAAAGGAGC+TGG | - | chr3_1:58160296-58160315 | None:intergenic | 45.0% | |
| GAAGCATACTCACTACGTTG+AGG | - | chr3_1:58158636-58158655 | None:intergenic | 45.0% | |
| AAGGCAATTATCCTGACCGT+TGG | + | chr3_1:58158903-58158922 | Msa0364710:intron | 45.0% | |
| CTAGAGATGGTAAAGCGAGT+TGG | + | chr3_1:58159905-58159924 | Msa0364710:intron | 45.0% | |
| CTTTCACCACAGACAGGAAA+AGG | + | chr3_1:58160161-58160180 | Msa0364710:intron | 45.0% | |
| ! | GAGTCATGAGTGTCGTTATC+TGG | - | chr3_1:58160230-58160249 | None:intergenic | 45.0% |
| CAATCCAGCAACCAATGACT+GGG | + | chr3_1:58160268-58160287 | Msa0364710:CDS | 45.0% | |
| AATACCTCACTGAAAGGAGC+TGG | - | chr3_1:58160296-58160315 | None:intergenic | 45.0% | |
| TGCCTTCCAAGCAATAGACC+CGG | - | chr3_1:58158889-58158908 | None:intergenic | 50.0% | |
| ATGGGCATCAAAGATAGGGC+TGG | + | chr3_1:58159771-58159790 | Msa0364710:intron | 50.0% | |
| TCAAAGATAGGGCTGGATCG+AGG | + | chr3_1:58159778-58159797 | Msa0364710:intron | 50.0% | |
| CAAAGATAGGGCTGGATCGA+GGG | + | chr3_1:58159779-58159798 | Msa0364710:intron | 50.0% | |
| GCAATCCAGCAACCAATGAC+TGG | + | chr3_1:58160267-58160286 | Msa0364710:CDS | 50.0% | |
| TGCCTTCCAAGCAATAGACC+CGG | - | chr3_1:58158889-58158908 | None:intergenic | 50.0% | |
| ATGGGCATCAAAGATAGGGC+TGG | + | chr3_1:58159771-58159790 | Msa0364710:intron | 50.0% | |
| TCAAAGATAGGGCTGGATCG+AGG | + | chr3_1:58159778-58159797 | Msa0364710:intron | 50.0% | |
| CAAAGATAGGGCTGGATCGA+GGG | + | chr3_1:58159779-58159798 | Msa0364710:intron | 50.0% | |
| GCAATCCAGCAACCAATGAC+TGG | + | chr3_1:58160267-58160286 | Msa0364710:CDS | 50.0% | |
| TCGAACCCGGGTCTATTGCT+TGG | + | chr3_1:58158880-58158899 | Msa0364710:intron | 55.0% | |
| ACCCGGGTCTATTGCTTGGA+AGG | + | chr3_1:58158884-58158903 | Msa0364710:intron | 55.0% | |
| GCCTTCCAAGCAATAGACCC+GGG | - | chr3_1:58158888-58158907 | None:intergenic | 55.0% | |
| GCGTTTGTAGTCCAACGGTC+AGG | - | chr3_1:58158917-58158936 | None:intergenic | 55.0% | |
| ! | GGAACCCAGTCATTGGTTGC+TGG | - | chr3_1:58160275-58160294 | None:intergenic | 55.0% |
| AGGAGCTGGAACCCAGTCAT+TGG | - | chr3_1:58160282-58160301 | None:intergenic | 55.0% | |
| GGTTCCAGCTCCTTTCAGTG+AGG | + | chr3_1:58160289-58160308 | Msa0364710:CDS | 55.0% | |
| TCGAACCCGGGTCTATTGCT+TGG | + | chr3_1:58158880-58158899 | Msa0364710:intron | 55.0% | |
| ACCCGGGTCTATTGCTTGGA+AGG | + | chr3_1:58158884-58158903 | Msa0364710:intron | 55.0% | |
| GCCTTCCAAGCAATAGACCC+GGG | - | chr3_1:58158888-58158907 | None:intergenic | 55.0% | |
| GCGTTTGTAGTCCAACGGTC+AGG | - | chr3_1:58158917-58158936 | None:intergenic | 55.0% | |
| ! | GGAACCCAGTCATTGGTTGC+TGG | - | chr3_1:58160275-58160294 | None:intergenic | 55.0% |
| AGGAGCTGGAACCCAGTCAT+TGG | - | chr3_1:58160282-58160301 | None:intergenic | 55.0% | |
| GGTTCCAGCTCCTTTCAGTG+AGG | + | chr3_1:58160289-58160308 | Msa0364710:CDS | 55.0% | |
| ATAGACCCGGGTTCGACTCC+CGG | - | chr3_1:58158876-58158895 | None:intergenic | 60.0% | |
| GGGCTGGATCGAGGGTCTAT+CGG | + | chr3_1:58159787-58159806 | Msa0364710:intron | 60.0% | |
| CGAGGGTCTATCGGTGTGTC+TGG | + | chr3_1:58159796-58159815 | Msa0364710:intron | 60.0% | |
| AAAAGGGACGGGCCCAAGTG+TGG | - | chr3_1:58159934-58159953 | None:intergenic | 60.0% | |
| ATAGACCCGGGTTCGACTCC+CGG | - | chr3_1:58158876-58158895 | None:intergenic | 60.0% | |
| GGGCTGGATCGAGGGTCTAT+CGG | + | chr3_1:58159787-58159806 | Msa0364710:intron | 60.0% | |
| CGAGGGTCTATCGGTGTGTC+TGG | + | chr3_1:58159796-58159815 | Msa0364710:intron | 60.0% | |
| AAAAGGGACGGGCCCAAGTG+TGG | - | chr3_1:58159934-58159953 | None:intergenic | 60.0% | |
| CGTTTGCCGGGAGTCGAACC+CGG | + | chr3_1:58158867-58158886 | Msa0364710:intron | 65.0% | |
| GTTTGCCGGGAGTCGAACCC+GGG | + | chr3_1:58158868-58158887 | Msa0364710:intron | 65.0% | |
| ! | AGCGAGTTGGCCGCCACACT+TGG | + | chr3_1:58159918-58159937 | Msa0364710:intron | 65.0% |
| ! | GCGAGTTGGCCGCCACACTT+GGG | + | chr3_1:58159919-58159938 | Msa0364710:intron | 65.0% |
| CGTTTGCCGGGAGTCGAACC+CGG | + | chr3_1:58158867-58158886 | Msa0364710:intron | 65.0% | |
| GTTTGCCGGGAGTCGAACCC+GGG | + | chr3_1:58158868-58158887 | Msa0364710:intron | 65.0% | |
| ! | AGCGAGTTGGCCGCCACACT+TGG | + | chr3_1:58159918-58159937 | Msa0364710:intron | 65.0% |
| ! | GCGAGTTGGCCGCCACACTT+GGG | + | chr3_1:58159919-58159938 | Msa0364710:intron | 65.0% |
| AGGGACGGGCCCAAGTGTGG+CGG | - | chr3_1:58159931-58159950 | None:intergenic | 70.0% | |
| AGGGACGGGCCCAAGTGTGG+CGG | - | chr3_1:58159931-58159950 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 58158440 | 58160595 | 58158440 | ID=Msa0364710;Name=Msa0364710 |
| chr3_1 | mRNA | 58158440 | 58160595 | 58158440 | ID=Msa0364710-mRNA-1;Parent=Msa0364710;Name=Msa0364710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=76|1|1|1|1|1|4|145|165 |
| chr3_1 | exon | 58158440 | 58158740 | 58158440 | ID=Msa0364710-mRNA-1:exon:10924;Parent=Msa0364710-mRNA-1 |
| chr3_1 | exon | 58159338 | 58159430 | 58159338 | ID=Msa0364710-mRNA-1:exon:10925;Parent=Msa0364710-mRNA-1 |
| chr3_1 | exon | 58160173 | 58160310 | 58160173 | ID=Msa0364710-mRNA-1:exon:10926;Parent=Msa0364710-mRNA-1 |
| chr3_1 | exon | 58160409 | 58160595 | 58160409 | ID=Msa0364710-mRNA-1:exon:10927;Parent=Msa0364710-mRNA-1 |
| chr3_1 | five_prime_UTR | 58158440 | 58158515 | 58158440 | ID=Msa0364710-mRNA-1:five_prime_utr;Parent=Msa0364710-mRNA-1 |
| chr3_1 | CDS | 58158516 | 58158740 | 58158516 | ID=Msa0364710-mRNA-1:cds;Parent=Msa0364710-mRNA-1 |
| chr3_1 | CDS | 58159338 | 58159430 | 58159338 | ID=Msa0364710-mRNA-1:cds;Parent=Msa0364710-mRNA-1 |
| chr3_1 | CDS | 58160173 | 58160310 | 58160173 | ID=Msa0364710-mRNA-1:cds;Parent=Msa0364710-mRNA-1 |
| chr3_1 | CDS | 58160409 | 58160450 | 58160409 | ID=Msa0364710-mRNA-1:cds;Parent=Msa0364710-mRNA-1 |
| chr3_1 | three_prime_UTR | 58160451 | 58160595 | 58160451 | ID=Msa0364710-mRNA-1:three_prime_utr;Parent=Msa0364710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
