Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959480 | XP_003619730.1 | 94.158 | 291 | 13 | 1 | 1 | 287 | 1 | 291 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959480 | sp|Q9LT10|CXE18_ARATH | 52.560 | 293 | 117 | 5 | 2 | 286 | 3 | 281 | 1.51e-109 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0959480 | 0.843045 | 1.783695e-58 | -8.615850e-47 |
| Msa0605640 | Msa0959480 | 0.806783 | 6.954964e-50 | -8.615850e-47 |
| Msa0364710 | Msa0959480 | 0.810768 | 9.781489e-51 | -8.615850e-47 |
| Msa0387830 | Msa0959480 | 0.800905 | 1.157595e-48 | -8.615850e-47 |
| Msa0420790 | Msa0959480 | 0.802333 | 5.896541e-49 | -8.615850e-47 |
| Msa0456690 | Msa0959480 | 0.808956 | 2.400587e-50 | -8.615850e-47 |
| Msa0254340 | Msa0959480 | 0.801951 | 7.064693e-49 | -8.615850e-47 |
| Msa0574910 | Msa0959480 | 0.832604 | 8.597486e-56 | -8.615850e-47 |
| Msa0867720 | Msa0959480 | 0.810614 | 1.056124e-50 | -8.615850e-47 |
| Msa0930760 | Msa0959480 | 0.839386 | 1.634299e-57 | -8.615850e-47 |
| Msa0959480 | Msa1212190 | 0.809412 | 1.916496e-50 | -8.615850e-47 |
| Msa0959480 | Msa1212270 | 0.800524 | 1.384528e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959480 | MtrunA17_Chr6g0477231 | 94.158 | 291 | 13 | 1 | 1 | 287 | 1 | 291 | 0.0 | 563 |
| Msa0959480 | MtrunA17_Chr6g0477251 | 79.078 | 282 | 59 | 0 | 6 | 287 | 8 | 289 | 2.32e-162 | 478 |
| Msa0959480 | MtrunA17_Chr6g0477251 | 77.305 | 282 | 64 | 0 | 6 | 287 | 562 | 843 | 2.02e-159 | 470 |
| Msa0959480 | MtrunA17_Chr6g0477161 | 77.385 | 283 | 63 | 1 | 6 | 287 | 357 | 639 | 4.93e-161 | 468 |
| Msa0959480 | MtrunA17_Chr6g0477161 | 69.286 | 280 | 86 | 0 | 8 | 287 | 11 | 290 | 1.30e-142 | 421 |
| Msa0959480 | MtrunA17_Chr6g0477241 | 77.344 | 256 | 50 | 1 | 6 | 261 | 19 | 266 | 3.55e-135 | 388 |
| Msa0959480 | MtrunA17_Chr6g0477271 | 56.794 | 287 | 115 | 2 | 3 | 287 | 28 | 307 | 5.62e-117 | 343 |
| Msa0959480 | MtrunA17_Chr1g0196311 | 41.237 | 291 | 160 | 5 | 1 | 285 | 25 | 310 | 4.58e-68 | 218 |
| Msa0959480 | MtrunA17_Chr1g0191301 | 40.278 | 288 | 165 | 3 | 2 | 285 | 10 | 294 | 7.30e-68 | 218 |
| Msa0959480 | MtrunA17_Chr7g0259161 | 38.567 | 293 | 171 | 4 | 1 | 285 | 9 | 300 | 2.47e-66 | 214 |
| Msa0959480 | MtrunA17_Chr6g0474491 | 38.113 | 265 | 150 | 5 | 30 | 287 | 24 | 281 | 4.42e-50 | 171 |
| Msa0959480 | MtrunA17_Chr8g0351211 | 34.909 | 275 | 159 | 5 | 29 | 292 | 13 | 278 | 4.60e-45 | 157 |
| Msa0959480 | MtrunA17_Chr6g0474411 | 36.704 | 267 | 151 | 8 | 29 | 287 | 27 | 283 | 1.11e-44 | 157 |
| Msa0959480 | MtrunA17_Chr6g0474471 | 36.071 | 280 | 163 | 6 | 22 | 294 | 17 | 287 | 2.38e-44 | 156 |
| Msa0959480 | MtrunA17_Chr6g0474631 | 35.521 | 259 | 143 | 6 | 2 | 254 | 4 | 244 | 3.86e-43 | 152 |
| Msa0959480 | MtrunA17_Chr1g0204201 | 37.455 | 275 | 137 | 11 | 29 | 285 | 23 | 280 | 1.37e-42 | 151 |
| Msa0959480 | MtrunA17_Chr8g0351171 | 33.569 | 283 | 166 | 7 | 23 | 295 | 10 | 280 | 3.56e-42 | 150 |
| Msa0959480 | MtrunA17_Chr1g0204211 | 33.333 | 234 | 130 | 5 | 30 | 254 | 43 | 259 | 3.02e-40 | 145 |
| Msa0959480 | MtrunA17_Chr8g0351201 | 35.317 | 252 | 142 | 5 | 47 | 287 | 40 | 281 | 1.22e-39 | 143 |
| Msa0959480 | MtrunA17_Chr6g0474541 | 35.345 | 232 | 129 | 6 | 30 | 254 | 53 | 270 | 4.90e-38 | 140 |
| Msa0959480 | MtrunA17_Chr1g0149271 | 33.333 | 258 | 154 | 6 | 29 | 283 | 15 | 257 | 1.38e-37 | 137 |
| Msa0959480 | MtrunA17_Chr7g0214851 | 34.109 | 258 | 147 | 7 | 44 | 283 | 45 | 297 | 4.77e-37 | 137 |
| Msa0959480 | MtrunA17_Chr1g0210121 | 36.220 | 254 | 131 | 11 | 46 | 283 | 52 | 290 | 3.79e-36 | 134 |
| Msa0959480 | MtrunA17_Chr4g0025291 | 31.939 | 263 | 158 | 4 | 29 | 283 | 17 | 266 | 1.02e-35 | 132 |
| Msa0959480 | MtrunA17_Chr7g0268091 | 33.333 | 240 | 140 | 4 | 53 | 283 | 39 | 267 | 4.62e-32 | 123 |
| Msa0959480 | MtrunA17_Chr3g0081521 | 29.478 | 268 | 178 | 2 | 29 | 285 | 19 | 286 | 8.79e-31 | 120 |
| Msa0959480 | MtrunA17_Chr3g0133701 | 32.520 | 246 | 137 | 7 | 47 | 281 | 34 | 261 | 5.19e-30 | 117 |
| Msa0959480 | MtrunA17_Chr4g0045191 | 35.135 | 185 | 109 | 3 | 36 | 218 | 33 | 208 | 2.75e-29 | 115 |
| Msa0959480 | MtrunA17_Chr4g0045131 | 31.557 | 244 | 145 | 7 | 47 | 283 | 75 | 303 | 1.41e-28 | 114 |
| Msa0959480 | MtrunA17_Chr7g0235741 | 33.488 | 215 | 126 | 5 | 47 | 254 | 67 | 271 | 3.19e-28 | 113 |
| Msa0959480 | MtrunA17_Chr4g0045181 | 31.276 | 243 | 150 | 5 | 47 | 283 | 35 | 266 | 3.64e-28 | 112 |
| Msa0959480 | MtrunA17_Chr4g0045121 | 31.557 | 244 | 145 | 7 | 47 | 283 | 38 | 266 | 3.89e-26 | 107 |
| Msa0959480 | MtrunA17_Chr5g0394241 | 29.091 | 275 | 155 | 8 | 29 | 283 | 21 | 275 | 7.58e-23 | 97.8 |
| Msa0959480 | MtrunA17_Chr6g0458881 | 31.034 | 203 | 103 | 3 | 89 | 254 | 156 | 358 | 9.55e-23 | 99.4 |
| Msa0959480 | MtrunA17_Chr1g0205871 | 28.980 | 245 | 149 | 6 | 51 | 283 | 40 | 271 | 2.94e-22 | 96.3 |
| Msa0959480 | MtrunA17_Chr3g0095711 | 29.150 | 247 | 147 | 8 | 51 | 283 | 85 | 317 | 1.66e-21 | 94.7 |
| Msa0959480 | MtrunA17_Chr7g0228721 | 29.245 | 212 | 105 | 3 | 88 | 254 | 160 | 371 | 1.82e-21 | 95.5 |
| Msa0959480 | MtrunA17_Chr8g0353951 | 27.778 | 270 | 160 | 11 | 29 | 283 | 28 | 277 | 1.18e-20 | 91.7 |
| Msa0959480 | MtrunA17_Chr5g0394211 | 31.148 | 183 | 103 | 4 | 51 | 220 | 75 | 247 | 3.16e-20 | 90.9 |
| Msa0959480 | MtrunA17_Chr5g0394251 | 25.566 | 309 | 190 | 9 | 29 | 322 | 25 | 308 | 7.79e-20 | 89.4 |
| Msa0959480 | MtrunA17_Chr7g0233871 | 30.337 | 267 | 158 | 7 | 29 | 283 | 24 | 274 | 6.35e-16 | 78.2 |
| Msa0959480 | MtrunA17_Chr6g0477291 | 60.784 | 51 | 19 | 1 | 231 | 281 | 1 | 50 | 4.46e-15 | 69.3 |
| Msa0959480 | MtrunA17_Chr6g0474611 | 33.088 | 136 | 78 | 5 | 169 | 294 | 1 | 133 | 1.80e-14 | 70.9 |
| Msa0959480 | MtrunA17_Chr1g0205781 | 29.008 | 262 | 157 | 9 | 29 | 279 | 24 | 267 | 7.64e-14 | 71.6 |
| Msa0959480 | MtrunA17_Chr1g0205791 | 27.426 | 237 | 145 | 6 | 57 | 283 | 46 | 265 | 7.68e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959480 | AT5G23530.1 | 52.560 | 293 | 117 | 5 | 2 | 286 | 3 | 281 | 1.53e-110 | 327 |
| Msa0959480 | AT5G27320.1 | 40.559 | 286 | 164 | 2 | 3 | 285 | 11 | 293 | 6.09e-70 | 223 |
| Msa0959480 | AT3G63010.1 | 37.671 | 292 | 170 | 5 | 1 | 285 | 9 | 295 | 1.50e-62 | 204 |
| Msa0959480 | AT3G05120.1 | 36.570 | 309 | 180 | 3 | 3 | 298 | 11 | 316 | 1.97e-62 | 204 |
| Msa0959480 | AT5G62180.1 | 37.121 | 264 | 154 | 8 | 30 | 286 | 21 | 279 | 7.48e-49 | 168 |
| Msa0959480 | AT2G45600.1 | 34.836 | 244 | 136 | 5 | 56 | 286 | 38 | 271 | 2.78e-42 | 150 |
| Msa0959480 | AT2G45610.1 | 32.364 | 275 | 167 | 5 | 30 | 295 | 22 | 286 | 1.29e-41 | 149 |
| Msa0959480 | AT5G16080.1 | 36.400 | 250 | 133 | 8 | 46 | 283 | 54 | 289 | 7.22e-41 | 147 |
| Msa0959480 | AT1G68620.1 | 33.074 | 257 | 154 | 5 | 54 | 302 | 57 | 303 | 5.07e-40 | 145 |
| Msa0959480 | AT5G06570.1 | 34.839 | 310 | 169 | 7 | 9 | 305 | 8 | 297 | 9.73e-35 | 130 |
| Msa0959480 | AT5G06570.2 | 34.839 | 310 | 169 | 7 | 9 | 305 | 8 | 297 | 9.73e-35 | 130 |
| Msa0959480 | AT5G06570.3 | 34.839 | 310 | 169 | 7 | 9 | 305 | 23 | 312 | 1.35e-34 | 130 |
| Msa0959480 | AT5G06570.4 | 34.839 | 310 | 169 | 7 | 9 | 305 | 23 | 312 | 1.35e-34 | 130 |
| Msa0959480 | AT1G47480.1 | 30.241 | 291 | 178 | 9 | 11 | 299 | 5 | 272 | 1.25e-31 | 122 |
| Msa0959480 | AT1G19190.1 | 33.460 | 263 | 146 | 12 | 29 | 281 | 17 | 260 | 3.15e-29 | 115 |
| Msa0959480 | AT3G48700.1 | 32.283 | 254 | 139 | 10 | 47 | 281 | 32 | 271 | 1.97e-28 | 114 |
| Msa0959480 | AT3G48690.1 | 31.579 | 247 | 146 | 7 | 47 | 281 | 32 | 267 | 4.08e-28 | 112 |
| Msa0959480 | AT1G49640.1 | 30.040 | 253 | 162 | 9 | 50 | 299 | 36 | 276 | 6.29e-27 | 109 |
| Msa0959480 | AT3G27320.2 | 27.566 | 341 | 154 | 9 | 23 | 283 | 37 | 364 | 6.07e-25 | 105 |
| Msa0959480 | AT5G14310.1 | 32.353 | 238 | 114 | 6 | 90 | 283 | 148 | 382 | 6.80e-25 | 105 |
| Msa0959480 | AT3G27320.1 | 30.515 | 272 | 137 | 8 | 54 | 283 | 135 | 396 | 3.25e-24 | 103 |
| Msa0959480 | AT1G49660.1 | 30.040 | 253 | 157 | 8 | 35 | 279 | 22 | 262 | 3.36e-24 | 102 |
| Msa0959480 | AT2G03550.1 | 32.365 | 241 | 138 | 7 | 47 | 279 | 32 | 255 | 6.38e-23 | 98.2 |
| Msa0959480 | AT1G49650.1 | 29.231 | 260 | 159 | 10 | 50 | 299 | 91 | 335 | 1.02e-20 | 92.8 |
Find 111 sgRNAs with CRISPR-Local
Find 462 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGTTCCGGTGCAAATT+TGG | 0.238489 | 6_3:+76208496 | Msa0959480:CDS |
| GCTGCCTTTGGCTTTCCTTT+TGG | 0.247308 | 6_3:+76215303 | Msa0959480:CDS |
| TACTCATGGTTCTGTCAAAA+TGG | 0.251627 | 6_3:+76212595 | Msa0959480:CDS |
| GACAGGAAGGGAGGCTGTTT+TGG | 0.273074 | 6_3:-76208231 | None:intergenic |
| GCAGCTGTGGTGGCTGCCTT+TGG | 0.275133 | 6_3:+76215291 | Msa0959480:CDS |
| TGCGGAGGATTTGTCGGGTT+TGG | 0.280062 | 6_3:+76208745 | Msa0959480:CDS |
| GGCACATCACCTTGCAGTTC+GGG | 0.289097 | 6_3:+76208517 | Msa0959480:CDS |
| CTCTTTACTCCCACTGTTGC+CGG | 0.296074 | 6_3:+76208182 | Msa0959480:CDS |
| GGCGTTAACGGTAATGTCTT+TGG | 0.307568 | 6_3:-76208138 | None:intergenic |
| GCAGTTCGGGTTTGTAAAGC+TGG | 0.329901 | 6_3:+76208530 | Msa0959480:CDS |
| TTCCTTGCCGGTGACAGTTC+CGG | 0.365907 | 6_3:+76208485 | Msa0959480:CDS |
| GTGGTGGAAGGTGTTCTTAC+CGG | 0.381206 | 6_3:+76208676 | Msa0959480:CDS |
| GGGTTTGTAAAGCTGGGCTC+CGG | 0.403578 | 6_3:+76208537 | Msa0959480:CDS |
| ATCATTTACTTCCACGGCGG+CGG | 0.407976 | 6_3:+76208254 | Msa0959480:CDS |
| CCTAATGCTACTCCCGTTAA+CGG | 0.408492 | 6_3:+76208107 | Msa0959480:CDS |
| GATTTGATCCTTTGAATGAT+TGG | 0.409071 | 6_3:+76208798 | Msa0959480:CDS |
| GCCGAATGCGGAGGATTTGT+CGG | 0.409294 | 6_3:+76208739 | Msa0959480:CDS |
| TGGCACATCACCTTGCAGTT+CGG | 0.409769 | 6_3:+76208516 | Msa0959480:CDS |
| ACTCAACACCTCTTCTTCCT+TGG | 0.411552 | 6_3:+76207976 | Msa0959480:CDS |
| TGGCAAGAAATGCAGCTGTT+TGG | 0.416942 | 6_3:+76212640 | Msa0959480:CDS |
| ACCCGATAATCCGGATTTCC+CGG | 0.425872 | 6_3:-76208556 | None:intergenic |
| TTTGGTGGAAACGCCGTTAA+CGG | 0.430126 | 6_3:-76208120 | None:intergenic |
| TCCGGGAAATCCGGATTATC+GGG | 0.432121 | 6_3:+76208555 | Msa0959480:CDS |
| GTGTCAAAATGTTTCCTTGC+CGG | 0.436783 | 6_3:+76208473 | Msa0959480:CDS |
| AAGCTGGGCTCCGGGAAATC+CGG | 0.437572 | 6_3:+76208546 | Msa0959480:CDS |
| CCGAATGCGGAGGATTTGTC+GGG | 0.438724 | 6_3:+76208740 | Msa0959480:CDS |
| TAAAAGTGAAAGAAGTGAAA+TGG | 0.440270 | 6_3:-76208012 | None:intergenic |
| CCGTTAACGGGAGTAGCATT+AGG | 0.443886 | 6_3:-76208107 | None:intergenic |
| CCCGACAAATCCTCCGCATT+CGG | 0.445071 | 6_3:-76208740 | None:intergenic |
| TCTACATCAGAGCTTTCCTT+TGG | 0.446274 | 6_3:+76212620 | Msa0959480:CDS |
| TGGATACCAACCCGATAATC+CGG | 0.449037 | 6_3:-76208565 | None:intergenic |
| TTGGTGGAAACGCCGTTAAC+GGG | 0.454826 | 6_3:-76208119 | None:intergenic |
| CGCCGTTGGTGTCGATGGTA+AGG | 0.455201 | 6_3:+76208645 | Msa0959480:CDS |
| GATATCGATGCTCCGGTGTA+AGG | 0.456817 | 6_3:-76208373 | None:intergenic |
| CTTTATGCCGTAGACTCTGC+AGG | 0.467753 | 6_3:+76208315 | Msa0959480:CDS |
| CATTCACCGCGTCATGATCT+CGG | 0.469524 | 6_3:-76208709 | None:intergenic |
| TGCAGTTTCAGCAGCTGTGG+TGG | 0.476511 | 6_3:+76215281 | Msa0959480:CDS |
| TTAACGCCGAAAATAACGTT+TGG | 0.477196 | 6_3:+76208153 | Msa0959480:CDS |
| TGCTGCAGTTTCAGCAGCTG+TGG | 0.481162 | 6_3:+76215278 | Msa0959480:CDS |
| GAGGCGGAGATTAAACTTGA+TGG | 0.482240 | 6_3:+76208620 | Msa0959480:CDS |
| CTTTGAATGATTGGCAAAAG+AGG | 0.487397 | 6_3:+76208807 | Msa0959480:CDS |
| CCTGTCATCATTTACTTCCA+CGG | 0.488327 | 6_3:+76208248 | Msa0959480:CDS |
| TCATTTACTTCCACGGCGGC+GGG | 0.488815 | 6_3:+76208255 | Msa0959480:CDS |
| AAGAAGTGAAATGGTAGCTC+TGG | 0.489575 | 6_3:-76208003 | None:intergenic |
| GTCAGAATTTATCTTACTCA+TGG | 0.491195 | 6_3:+76212581 | Msa0959480:CDS |
| TGGTGCTGAAATCTCCCTAT+CGG | 0.499897 | 6_3:+76215323 | Msa0959480:CDS |
| CAGTTCGGGTTTGTAAAGCT+GGG | 0.506658 | 6_3:+76208531 | Msa0959480:CDS |
| AAACTTCCCTGCAGAGTCTA+CGG | 0.516801 | 6_3:-76208322 | None:intergenic |
| GGTTTGTAAAGCTGGGCTCC+GGG | 0.520514 | 6_3:+76208538 | Msa0959480:CDS |
| CGATGGTAAGGACGGATTGG+TGG | 0.521258 | 6_3:+76208657 | Msa0959480:CDS |
| TGGTAAGGACGGATTGGTGG+TGG | 0.530541 | 6_3:+76208660 | Msa0959480:CDS |
| ATTTGCACCGGAACTGTCAC+CGG | 0.536438 | 6_3:-76208492 | None:intergenic |
| TGGATCGCCGTTGGTGTCGA+TGG | 0.540273 | 6_3:+76208640 | Msa0959480:CDS |
| AGGGAGATTTCAGCACCAAA+AGG | 0.542956 | 6_3:-76215318 | None:intergenic |
| GTTAATGAGACGGCGGTTGA+CGG | 0.543320 | 6_3:-76208063 | None:intergenic |
| TAAAGCATCGTGGTAGATTG+AGG | 0.544373 | 6_3:-76208297 | None:intergenic |
| ATCGTGGTAGATTGAGGAAG+GGG | 0.546376 | 6_3:-76208291 | None:intergenic |
| TGATCTCGGTTCGATCCCTC+CGG | 0.547999 | 6_3:-76208695 | None:intergenic |
| AAGGACGGATTGGTGGTGGA+AGG | 0.550023 | 6_3:+76208664 | Msa0959480:CDS |
| GCCGGAGAAGTCATCGGAGA+TGG | 0.551507 | 6_3:+76208200 | Msa0959480:CDS |
| ACCATCTCCGATGACTTCTC+CGG | 0.551868 | 6_3:-76208201 | None:intergenic |
| TGCGACGGATATCGATGCTC+CGG | 0.555954 | 6_3:-76208380 | None:intergenic |
| CCGTGGAAGTAAATGATGAC+AGG | 0.560772 | 6_3:-76208248 | None:intergenic |
| ATCAAGTTTAATCTCCGCCT+CGG | 0.562819 | 6_3:-76208618 | None:intergenic |
| CTGGCTTTCCAAGGAAGAAG+AGG | 0.565695 | 6_3:-76207984 | None:intergenic |
| GCATCGTGGTAGATTGAGGA+AGG | 0.566906 | 6_3:-76208293 | None:intergenic |
| GGCGCTTCTTCTCGCTCTAA+CGG | 0.569447 | 6_3:+76208038 | Msa0959480:CDS |
| CTGTGATGCATGAGTATTCG+TGG | 0.570715 | 6_3:+76215385 | Msa0959480:CDS |
| TATCCGTCGCAATATGATGA+TGG | 0.571005 | 6_3:+76208392 | Msa0959480:CDS |
| GAGGCATAGCAGAACCGATA+GGG | 0.571399 | 6_3:-76215337 | None:intergenic |
| ACAGCTGCATTTCTTGCCAA+AGG | 0.572494 | 6_3:-76212636 | None:intergenic |
| TGTCGATGGTAAGGACGGAT+TGG | 0.572977 | 6_3:+76208654 | Msa0959480:CDS |
| TAAACTTGATGGATCGCCGT+TGG | 0.573185 | 6_3:+76208631 | Msa0959480:CDS |
| GGAAATCCGGATTATCGGGT+TGG | 0.574486 | 6_3:+76208559 | Msa0959480:CDS |
| TCACTATAGCAGAAAGAACA+TGG | 0.577821 | 6_3:-76215359 | None:intergenic |
| GATGACTTCTCCGGCAACAG+TGG | 0.577971 | 6_3:-76208192 | None:intergenic |
| ATGGTAGCTCTGGCTTTCCA+AGG | 0.587238 | 6_3:-76207993 | None:intergenic |
| TGGCGGTGAGGAACGGACCG+AGG | 0.589279 | 6_3:+76208601 | Msa0959480:CDS |
| GGAAGTAAATGATGACAGGA+AGG | 0.590018 | 6_3:-76208244 | None:intergenic |
| GTTAACGGTAATGTCTTTGG+TGG | 0.590282 | 6_3:-76208135 | None:intergenic |
| GACTGAAGAAGTTAATGAGA+CGG | 0.593190 | 6_3:-76208073 | None:intergenic |
| GTGGAAGGTGTTCTTACCGG+AGG | 0.596371 | 6_3:+76208679 | Msa0959480:CDS |
| ATGACTTCTCCGGCAACAGT+GGG | 0.596379 | 6_3:-76208191 | None:intergenic |
| ATCGATGCTCCGGTGTAAGG+CGG | 0.602490 | 6_3:-76208370 | None:intergenic |
| ACTGTTGCCGGAGAAGTCAT+CGG | 0.603429 | 6_3:+76208194 | Msa0959480:CDS |
| CACCGGAACTGTCACCGGCA+AGG | 0.605958 | 6_3:-76208487 | None:intergenic |
| GAAAACTGAACCCGCCGCCG+TGG | 0.611082 | 6_3:-76208265 | None:intergenic |
| GTGATGTGCCAAATTTGCAC+CGG | 0.614788 | 6_3:-76208504 | None:intergenic |
| GGAGGCATAGCAGAACCGAT+AGG | 0.615955 | 6_3:-76215338 | None:intergenic |
| GAATGTAAGCGGGCCGAATG+CGG | 0.618920 | 6_3:+76208727 | Msa0959480:CDS |
| GTCCTTACCATCGACACCAA+CGG | 0.621799 | 6_3:-76208647 | None:intergenic |
| TGGAAGGTGTTCTTACCGGA+GGG | 0.627234 | 6_3:+76208680 | Msa0959480:CDS |
| GGAGAAGTCATCGGAGATGG+TGG | 0.629162 | 6_3:+76208203 | Msa0959480:CDS |
| GTTGGTGTCGATGGTAAGGA+CGG | 0.629245 | 6_3:+76208649 | Msa0959480:CDS |
| GTAAATGATGACAGGAAGGG+AGG | 0.632046 | 6_3:-76208240 | None:intergenic |
| TGTCAACTACCGCCTTACAC+CGG | 0.636801 | 6_3:+76208361 | Msa0959480:CDS |
| AGCACCAAAAGGAAAGCCAA+AGG | 0.643110 | 6_3:-76215307 | None:intergenic |
| CATCGTGGTAGATTGAGGAA+GGG | 0.643584 | 6_3:-76208292 | None:intergenic |
| CTTTACAAACCCGAACTGCA+AGG | 0.652824 | 6_3:-76208526 | None:intergenic |
| GAAGTAAATGATGACAGGAA+GGG | 0.653090 | 6_3:-76208243 | None:intergenic |
| TCTCCATCATCATATTGCGA+CGG | 0.653123 | 6_3:-76208395 | None:intergenic |
| GTCGCAATATGATGATGGAG+AGG | 0.653832 | 6_3:+76208397 | Msa0959480:CDS |
| CATGACGCGGTGAATGTAAG+CGG | 0.656915 | 6_3:+76208716 | Msa0959480:CDS |
| TTTATGCCGTAGACTCTGCA+GGG | 0.670628 | 6_3:+76208316 | Msa0959480:CDS |
| CGGTGAGGAACGGACCGAGG+CGG | 0.670710 | 6_3:+76208604 | Msa0959480:CDS |
| AACGGGAGTAGCATTAGGTG+AGG | 0.672219 | 6_3:-76208102 | None:intergenic |
| TGTGATGCATGAGTATTCGT+GGG | 0.693896 | 6_3:+76215386 | Msa0959480:CDS |
| TGAAGAAGTTAATGAGACGG+CGG | 0.714279 | 6_3:-76208070 | None:intergenic |
| GTCATCATTTACTTCCACGG+CGG | 0.732442 | 6_3:+76208251 | Msa0959480:CDS |
| ATCGAACCGAGATCATGACG+CGG | 0.753530 | 6_3:+76208703 | Msa0959480:CDS |
| CTATAGCAGAAAGAACATGG+AGG | 0.799803 | 6_3:-76215356 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACTATATAGTATAAA+AGG | - | chr6_3:76209734-76209753 | None:intergenic | 10.0% |
| !!! | AAATATTGAAATTTTAAATG+TGG | - | chr6_3:76214337-76214356 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTCAATATTTGT+TGG | + | chr6_3:76214339-76214358 | Msa0959480:intron | 10.0% |
| !! | TTTGTATTGAATTTATAATG+TGG | + | chr6_3:76209241-76209260 | Msa0959480:intron | 15.0% |
| !! | TTGTATTGAATTTATAATGT+GGG | + | chr6_3:76209242-76209261 | Msa0959480:intron | 15.0% |
| !! | AATAAAGTAAAAGAGATAAA+AGG | - | chr6_3:76210037-76210056 | None:intergenic | 15.0% |
| !!! | TTTTTTAGGATTTTAATTTC+TGG | + | chr6_3:76212311-76212330 | Msa0959480:intron | 15.0% |
| !!! | TAATTTCTATCAATTTGTTA+AGG | + | chr6_3:76212476-76212495 | Msa0959480:intron | 15.0% |
| !!! | TTTTGGTTTTGTTTTAATAA+TGG | + | chr6_3:76213055-76213074 | Msa0959480:intron | 15.0% |
| !!! | TTAATTGACATTTGATTTTT+AGG | + | chr6_3:76213370-76213389 | Msa0959480:intron | 15.0% |
| !!! | TTTTTTGTTATTCAGATTTA+TGG | + | chr6_3:76213988-76214007 | Msa0959480:intron | 15.0% |
| !! | TATGAAAATAAACTTAAACT+TGG | + | chr6_3:76214883-76214902 | Msa0959480:intron | 15.0% |
| !! | ATTCTGTTTACAAAAATAGT+TGG | + | chr6_3:76209470-76209489 | Msa0959480:intron | 20.0% |
| !!! | ATTTGTTACATCTACATATT+TGG | + | chr6_3:76209773-76209792 | Msa0959480:intron | 20.0% |
| !!! | TATCAGCACTTTATTTTATT+TGG | + | chr6_3:76210108-76210127 | Msa0959480:intron | 20.0% |
| !!! | TGAAAAATCTTTTGATAATG+AGG | + | chr6_3:76210739-76210758 | Msa0959480:intron | 20.0% |
| !! | AGTCAAAAGATATATACAAA+AGG | + | chr6_3:76211040-76211059 | Msa0959480:intron | 20.0% |
| !!! | GGAAATTGCATAATTATTTT+TGG | + | chr6_3:76211553-76211572 | Msa0959480:intron | 20.0% |
| !! | TGAATGAAGTAATAATTACA+GGG | - | chr6_3:76211755-76211774 | None:intergenic | 20.0% |
| !! | TTGAATGAAGTAATAATTAC+AGG | - | chr6_3:76211756-76211775 | None:intergenic | 20.0% |
| !! | AACTGATAGCAATTAAATAA+GGG | - | chr6_3:76211788-76211807 | None:intergenic | 20.0% |
| !!! | GATAAATTTCTAGAGTAAAT+TGG | + | chr6_3:76212333-76212352 | Msa0959480:intron | 20.0% |
| !!! | TAAATTGGTGATATTTCAAT+TGG | + | chr6_3:76212348-76212367 | Msa0959480:intron | 20.0% |
| !! | TAATTAAAAAAAGTGAGAGA+GGG | - | chr6_3:76212458-76212477 | None:intergenic | 20.0% |
| !! | TTAATTAAAAAAAGTGAGAG+AGG | - | chr6_3:76212459-76212478 | None:intergenic | 20.0% |
| !! | AAAAACAAAGATAGAGTAAT+TGG | + | chr6_3:76212669-76212688 | Msa0959480:CDS | 20.0% |
| !!! | TCTTTCTACAAACTTTTTAA+TGG | + | chr6_3:76213223-76213242 | Msa0959480:intron | 20.0% |
| !! | GTTGGAATTTAGTTAAATAT+GGG | - | chr6_3:76213303-76213322 | None:intergenic | 20.0% |
| !! | TGTTGGAATTTAGTTAAATA+TGG | - | chr6_3:76213304-76213323 | None:intergenic | 20.0% |
| !!! | TTTCTTAAATGTTGATAAGT+TGG | + | chr6_3:76213915-76213934 | Msa0959480:intron | 20.0% |
| !!! | TTTGTTCAATTTCTGATTTT+TGG | + | chr6_3:76214131-76214150 | Msa0959480:intron | 20.0% |
| !! | AGATTTCGATATATGAAATA+TGG | + | chr6_3:76214167-76214186 | Msa0959480:intron | 20.0% |
| !! | GCAAATCAAATGAATAAAAA+AGG | + | chr6_3:76214289-76214308 | Msa0959480:intron | 20.0% |
| !!! | TGCAAGAGAAAAATATTTTA+TGG | + | chr6_3:76214470-76214489 | Msa0959480:intron | 20.0% |
| !!! | TGGTTCTAAAAATTAATGTA+TGG | + | chr6_3:76214534-76214553 | Msa0959480:intron | 20.0% |
| !! | TTCAAATGAAATTGAAACTT+AGG | + | chr6_3:76214680-76214699 | Msa0959480:intron | 20.0% |
| !! | TAATGGTAAATTATACTTCA+AGG | + | chr6_3:76214719-76214738 | Msa0959480:intron | 20.0% |
| !! | AAATAAACTTAAACTTGGTT+TGG | + | chr6_3:76214888-76214907 | Msa0959480:intron | 20.0% |
| ! | TAAAAGTGAAAGAAGTGAAA+TGG | - | chr6_3:76208015-76208034 | None:intergenic | 25.0% |
| !!! | TCACTTCTTTCACTTTTATT+CGG | + | chr6_3:76208017-76208036 | Msa0959480:CDS | 25.0% |
| !!! | ATTTTTGGAAGAGAATAGAA+AGG | + | chr6_3:76208430-76208449 | Msa0959480:CDS | 25.0% |
| !! | TATGATTGGTTAAAGAAATG+TGG | + | chr6_3:76208833-76208852 | Msa0959480:intron | 25.0% |
| !! | ATGATTGGTTAAAGAAATGT+GGG | + | chr6_3:76208834-76208853 | Msa0959480:intron | 25.0% |
| ! | TAAAAAACATGAACCATGTT+TGG | - | chr6_3:76208884-76208903 | None:intergenic | 25.0% |
| !!! | AATTTGGGTTTGAAGATTTT+TGG | + | chr6_3:76209411-76209430 | Msa0959480:intron | 25.0% |
| ! | GTTAAAAAAATGCTAACACA+AGG | - | chr6_3:76209668-76209687 | None:intergenic | 25.0% |
| !!! | TGATTCTAAGATTTTAAGAG+AGG | + | chr6_3:76209849-76209868 | Msa0959480:intron | 25.0% |
| ! | TTTAGATGCTCTTCTATAAA+GGG | + | chr6_3:76209886-76209905 | Msa0959480:intron | 25.0% |
| !!! | CTATAAAGGGTAATTTTGAT+TGG | + | chr6_3:76209899-76209918 | Msa0959480:intron | 25.0% |
| ! | TTATCTAGTGAAAATCTCAA+GGG | + | chr6_3:76209932-76209951 | Msa0959480:intron | 25.0% |
| ! | TAAAAGAGATAAAAGGATGA+GGG | - | chr6_3:76210030-76210049 | None:intergenic | 25.0% |
| ! | TATAGAAAATGTAGATGTTG+AGG | - | chr6_3:76210074-76210093 | None:intergenic | 25.0% |
| !! | TTGTTATTGGAAAGAGAAAA+TGG | + | chr6_3:76210333-76210352 | Msa0959480:intron | 25.0% |
| !! | AAAATGGAAATTTTCATCGA+GGG | + | chr6_3:76210349-76210368 | Msa0959480:intron | 25.0% |
| ! | ACTAAATGAGTGAGAATAAA+TGG | - | chr6_3:76210412-76210431 | None:intergenic | 25.0% |
| ! | TCATTTAGTCAATAATGTAG+TGG | + | chr6_3:76210423-76210442 | Msa0959480:intron | 25.0% |
| ! | TGAATAAACCAAGATCTATT+TGG | + | chr6_3:76210446-76210465 | Msa0959480:intron | 25.0% |
| !!! | GTATTGATCTTTTTCATCTT+TGG | - | chr6_3:76210473-76210492 | None:intergenic | 25.0% |
| !! | ACTCATGAGTTGAATTATTT+AGG | + | chr6_3:76210645-76210664 | Msa0959480:intron | 25.0% |
| !! | GAATTATTTAGGATGAAATC+AGG | + | chr6_3:76210656-76210675 | Msa0959480:intron | 25.0% |
| !!! | TAAATCGTTTTTGCATATCT+TGG | - | chr6_3:76210691-76210710 | None:intergenic | 25.0% |
| ! | CTCTGACATCATTTATTATA+TGG | - | chr6_3:76210715-76210734 | None:intergenic | 25.0% |
| !! | GGATTTATCTTTTATGTCTT+TGG | + | chr6_3:76210835-76210854 | Msa0959480:intron | 25.0% |
| !!! | GTATATATCTTTTGACTTAG+TGG | - | chr6_3:76211037-76211056 | None:intergenic | 25.0% |
| ! | AGATATATACAAAAGGAAAG+AGG | + | chr6_3:76211047-76211066 | Msa0959480:intron | 25.0% |
| ! | GATATATACAAAAGGAAAGA+GGG | + | chr6_3:76211048-76211067 | Msa0959480:intron | 25.0% |
| !! | AGTGGATATAGTTTTCTTAT+AGG | - | chr6_3:76211268-76211287 | None:intergenic | 25.0% |
| ! | ATATCCACTGTTGAATAAAA+AGG | + | chr6_3:76211279-76211298 | Msa0959480:intron | 25.0% |
| ! | TATCCACTGTTGAATAAAAA+GGG | + | chr6_3:76211280-76211299 | Msa0959480:intron | 25.0% |
| !!! | TTTTTCGTTGACTTTCTTTT+AGG | - | chr6_3:76211368-76211387 | None:intergenic | 25.0% |
| ! | CAATTTCCAATGATGAATTA+TGG | - | chr6_3:76211541-76211560 | None:intergenic | 25.0% |
| ! | ATAGCAATTAAATAAGGGTA+AGG | - | chr6_3:76211783-76211802 | None:intergenic | 25.0% |
| ! | GAACTGATAGCAATTAAATA+AGG | - | chr6_3:76211789-76211808 | None:intergenic | 25.0% |
| ! | TTTAGTTGAAAGTCTTCATA+GGG | - | chr6_3:76211812-76211831 | None:intergenic | 25.0% |
| !! | ATAGTCTTTGGAAACAATAT+TGG | - | chr6_3:76211908-76211927 | None:intergenic | 25.0% |
| ! | TTGGAATAGAAAATAGTCTT+TGG | - | chr6_3:76211920-76211939 | None:intergenic | 25.0% |
| ! | TAATCATCATCTTCAATTCA+AGG | + | chr6_3:76212187-76212206 | Msa0959480:intron | 25.0% |
| !!! | GGCATTTTGTTGTTTTTTTT+AGG | + | chr6_3:76212297-76212316 | Msa0959480:intron | 25.0% |
| ! | GTGATATTTCAATTGGAATT+CGG | + | chr6_3:76212355-76212374 | Msa0959480:intron | 25.0% |
| !! | GAATATTTTGCATCAGTTTT+AGG | + | chr6_3:76212428-76212447 | Msa0959480:intron | 25.0% |
| !! | AATGTTTTGCAAAGATAAAG+TGG | - | chr6_3:76212519-76212538 | None:intergenic | 25.0% |
| !! | AGCAATATCATTTGTTAGAT+TGG | + | chr6_3:76212848-76212867 | Msa0959480:intron | 25.0% |
| !! | GTTACTTATGACGATTATTT+TGG | + | chr6_3:76213038-76213057 | Msa0959480:intron | 25.0% |
| ! | TACATGACTTTGTATGAAAA+TGG | + | chr6_3:76213177-76213196 | Msa0959480:intron | 25.0% |
| !! | ACAAACTTTTTAATGGTTTC+CGG | + | chr6_3:76213230-76213249 | Msa0959480:intron | 25.0% |
| !!! | GTTATAGTTTTTTTGCTTAC+CGG | - | chr6_3:76213252-76213271 | None:intergenic | 25.0% |
| ! | TACATCTCTATTTAAGAACT+TGG | + | chr6_3:76213530-76213549 | Msa0959480:intron | 25.0% |
| ! | ACATCTCTATTTAAGAACTT+GGG | + | chr6_3:76213531-76213550 | Msa0959480:intron | 25.0% |
| ! | ATTTATTGAGCATAAATACC+TGG | + | chr6_3:76213588-76213607 | Msa0959480:intron | 25.0% |
| ! | AAACTAATCACAACATGTAT+AGG | - | chr6_3:76213691-76213710 | None:intergenic | 25.0% |
| ! | AAACTAATACAAAGTGATGA+GGG | + | chr6_3:76213790-76213809 | Msa0959480:intron | 25.0% |
| ! | AAAATTAAACCTTTGTCTCA+TGG | - | chr6_3:76214086-76214105 | None:intergenic | 25.0% |
| ! | ACAAAAAAGAAACAATGTCA+AGG | - | chr6_3:76214116-76214135 | None:intergenic | 25.0% |
| ! | ATCAAATGAATAAAAAAGGC+AGG | + | chr6_3:76214293-76214312 | Msa0959480:intron | 25.0% |
| !! | GATTTTATGCTACTATGATT+TGG | + | chr6_3:76214514-76214533 | Msa0959480:intron | 25.0% |
| ! | TGAAATTGAAACTTAGGTAA+TGG | + | chr6_3:76214686-76214705 | Msa0959480:intron | 25.0% |
| ! | AATTATACTTCAAGGATGAT+TGG | + | chr6_3:76214727-76214746 | Msa0959480:intron | 25.0% |
| ! | ATAATGAGACATAACTGATT+TGG | + | chr6_3:76214934-76214953 | Msa0959480:intron | 25.0% |
| ! | TAAAAAAGAGGTTTGATTGA+AGG | - | chr6_3:76215178-76215197 | None:intergenic | 25.0% |
| ! | TATTGTTCTGTCTAAAAAAG+AGG | - | chr6_3:76215190-76215209 | None:intergenic | 25.0% |
| !!! | ACAGAACAATATTTTAAGAG+AGG | + | chr6_3:76215199-76215218 | Msa0959480:intron | 25.0% |
| ! | TATATAGTTGTTGTCATGTT+TGG | + | chr6_3:76215429-76215448 | Msa0959480:intron | 25.0% |
| !!! | ACCACATCATAATGTTATTT+TGG | + | chr6_3:76215470-76215489 | Msa0959480:intron | 25.0% |
| !!! | TCATAATGTTATTTTGGCTT+TGG | + | chr6_3:76215476-76215495 | Msa0959480:intron | 25.0% |
| !! | ACGAAACCAAACGTTATTTT+CGG | - | chr6_3:76208162-76208181 | None:intergenic | 30.0% |
| ! | AGAGAATAGAAAGGTTTTAC+CGG | + | chr6_3:76208439-76208458 | Msa0959480:CDS | 30.0% |
| GATTTGATCCTTTGAATGAT+TGG | + | chr6_3:76208798-76208817 | Msa0959480:CDS | 30.0% | |
| GTTGATTGAATATCCAAACA+TGG | + | chr6_3:76208868-76208887 | Msa0959480:intron | 30.0% | |
| ATAATCAACTGAGTAGATTC+AGG | - | chr6_3:76208923-76208942 | None:intergenic | 30.0% | |
| TGATGTCAATTTCGATAGAA+TGG | + | chr6_3:76209061-76209080 | Msa0959480:intron | 30.0% | |
| TTAACTATTTGTGCACAAGT+GGG | - | chr6_3:76209358-76209377 | None:intergenic | 30.0% | |
| ATTAACTATTTGTGCACAAG+TGG | - | chr6_3:76209359-76209378 | None:intergenic | 30.0% | |
| TGCACAAATAGTTAATTGCT+TGG | + | chr6_3:76209363-76209382 | Msa0959480:intron | 30.0% | |
| ! | GTAAACAGAATTTTCAGTTG+TGG | - | chr6_3:76209461-76209480 | None:intergenic | 30.0% |
| TTATAGTGCAAAAGATGAGT+GGG | - | chr6_3:76209638-76209657 | None:intergenic | 30.0% | |
| TTTATAGTGCAAAAGATGAG+TGG | - | chr6_3:76209639-76209658 | None:intergenic | 30.0% | |
| !!! | TTCTAAGATTTTAAGAGAGG+TGG | + | chr6_3:76209852-76209871 | Msa0959480:intron | 30.0% |
| GTTTAGATGCTCTTCTATAA+AGG | + | chr6_3:76209885-76209904 | Msa0959480:intron | 30.0% | |
| GTTATCTAGTGAAAATCTCA+AGG | + | chr6_3:76209931-76209950 | Msa0959480:intron | 30.0% | |
| TATCTAGTGAAAATCTCAAG+GGG | + | chr6_3:76209933-76209952 | Msa0959480:intron | 30.0% | |
| GTAAAAGAGATAAAAGGATG+AGG | - | chr6_3:76210031-76210050 | None:intergenic | 30.0% | |
| AACATACTCCTATCTTTCAA+TGG | + | chr6_3:76210301-76210320 | Msa0959480:intron | 30.0% | |
| ! | GAAAATGGAAATTTTCATCG+AGG | + | chr6_3:76210348-76210367 | Msa0959480:intron | 30.0% |
| !! | TCACAAATTGCAGTCATTTT+TGG | - | chr6_3:76210809-76210828 | None:intergenic | 30.0% |
| TTCTACAAGTGTGGTAAAAA+TGG | + | chr6_3:76210992-76211011 | Msa0959480:intron | 30.0% | |
| ATCCACTGTTGAATAAAAAG+GGG | + | chr6_3:76211281-76211300 | Msa0959480:intron | 30.0% | |
| !! | GTTTTGATGATTAACGAAAG+AGG | + | chr6_3:76211341-76211360 | Msa0959480:intron | 30.0% |
| ! | AGATACAAGCTTTCATGTTT+TGG | + | chr6_3:76211399-76211418 | Msa0959480:intron | 30.0% |
| TGAAAGCCATAATTCATCAT+TGG | + | chr6_3:76211532-76211551 | Msa0959480:intron | 30.0% | |
| ! | AAACCCTAAACCTAATGTTT+TGG | + | chr6_3:76211654-76211673 | Msa0959480:intron | 30.0% |
| ! | AACCCTAAACCTAATGTTTT+GGG | + | chr6_3:76211655-76211674 | Msa0959480:intron | 30.0% |
| TTAGTTGAAAGTCTTCATAG+GGG | - | chr6_3:76211811-76211830 | None:intergenic | 30.0% | |
| CTTTAGTTGAAAGTCTTCAT+AGG | - | chr6_3:76211813-76211832 | None:intergenic | 30.0% | |
| ! | TGTTTTACGGTTACAGTTTT+TGG | - | chr6_3:76211990-76212009 | None:intergenic | 30.0% |
| ACCGTAAAACAAACAATGTA+CGG | + | chr6_3:76211999-76212018 | Msa0959480:intron | 30.0% | |
| !!! | ACCGTACATTGTTTGTTTTA+CGG | - | chr6_3:76212003-76212022 | None:intergenic | 30.0% |
| ! | GAAGATGAAGGTTACAATTT+TGG | - | chr6_3:76212036-76212055 | None:intergenic | 30.0% |
| AGAAAGAATGAAGAAGATGA+AGG | - | chr6_3:76212048-76212067 | None:intergenic | 30.0% | |
| ATATCAAGATTCCACAGTTA+CGG | - | chr6_3:76212273-76212292 | None:intergenic | 30.0% | |
| ! | CTGTGGAATCTTGATATTTT+TGG | + | chr6_3:76212276-76212295 | Msa0959480:intron | 30.0% |
| !! | AAGAGGTATTGAAGATTCAA+TGG | - | chr6_3:76212554-76212573 | None:intergenic | 30.0% |
| TCTTCAATACCTCTTCTATT+AGG | + | chr6_3:76212559-76212578 | Msa0959480:intron | 30.0% | |
| AAATTCTGACCTAATAGAAG+AGG | - | chr6_3:76212571-76212590 | None:intergenic | 30.0% | |
| GTCAGAATTTATCTTACTCA+TGG | + | chr6_3:76212581-76212600 | Msa0959480:CDS | 30.0% | |
| TTATAAAAAACTCCACTACC+TGG | - | chr6_3:76212700-76212719 | None:intergenic | 30.0% | |
| ! | ACTTTTCAACTCAAAATCGT+TGG | + | chr6_3:76212799-76212818 | Msa0959480:intron | 30.0% |
| TAACATAGCAACAAACACAT+TGG | - | chr6_3:76213159-76213178 | None:intergenic | 30.0% | |
| AAACATAAGCTCTTCATAGT+CGG | - | chr6_3:76213274-76213293 | None:intergenic | 30.0% | |
| ! | AATTTTTGTGTCGAACTTGT+TGG | - | chr6_3:76213321-76213340 | None:intergenic | 30.0% |
| !! | TGGTTTCTTTGGAAAAGTTT+TGG | + | chr6_3:76213459-76213478 | Msa0959480:intron | 30.0% |
| ! | GTGGATTGATTAAATTCATC+CGG | + | chr6_3:76213612-76213631 | Msa0959480:intron | 30.0% |
| TTAAATTCATCCGGTCAAAT+TGG | + | chr6_3:76213621-76213640 | Msa0959480:intron | 30.0% | |
| TATCACAAATCCAATTTGAC+CGG | - | chr6_3:76213634-76213653 | None:intergenic | 30.0% | |
| GAAACTAATACAAAGTGATG+AGG | + | chr6_3:76213789-76213808 | Msa0959480:intron | 30.0% | |
| ! | TGGAAATATGATAATGTTCC+TGG | + | chr6_3:76213841-76213860 | Msa0959480:intron | 30.0% |
| CATGTGAAAACAACTCTAAT+AGG | - | chr6_3:76213880-76213899 | None:intergenic | 30.0% | |
| !! | TGATAAGTTGGTCATTTACA+TGG | + | chr6_3:76213927-76213946 | Msa0959480:intron | 30.0% |
| GGTCATTTACATGGTTTAAT+AGG | + | chr6_3:76213936-76213955 | Msa0959480:intron | 30.0% | |
| CATCATGCAACATTAAATTC+TGG | + | chr6_3:76214033-76214052 | Msa0959480:intron | 30.0% | |
| ATTAAATTCTGGATCTGAGA+TGG | + | chr6_3:76214044-76214063 | Msa0959480:intron | 30.0% | |
| ATTACTTGAACGTGCAAATT+CGG | + | chr6_3:76214200-76214219 | Msa0959480:intron | 30.0% | |
| TTCGGTAATCATTTGAACAT+CGG | + | chr6_3:76214218-76214237 | Msa0959480:intron | 30.0% | |
| AAAAGACAATGCGAAAACAT+GGG | - | chr6_3:76214386-76214405 | None:intergenic | 30.0% | |
| ATAGAGAAAAGCGAAGTTAT+CGG | + | chr6_3:76214597-76214616 | Msa0959480:intron | 30.0% | |
| ATGCTACATATGTAACATTG+CGG | + | chr6_3:76214656-76214675 | Msa0959480:intron | 30.0% | |
| GTAATGGTTGAAAAGACTAA+TGG | + | chr6_3:76214702-76214721 | Msa0959480:intron | 30.0% | |
| !! | TGATGTAACTTCTAGAATTC+TGG | + | chr6_3:76214824-76214843 | Msa0959480:intron | 30.0% |
| !! | GATATGACTTGCACAATTTT+TGG | + | chr6_3:76215009-76215028 | Msa0959480:intron | 30.0% |
| ! | CTAATTTTTGCAAAGTACGA+AGG | + | chr6_3:76215040-76215059 | Msa0959480:intron | 30.0% |
| ATAACAATGTCATACATGTG+AGG | + | chr6_3:76215101-76215120 | Msa0959480:intron | 30.0% | |
| TTGATTGAAGGATTTCCTAT+AGG | - | chr6_3:76215166-76215185 | None:intergenic | 30.0% | |
| GTGGTATAAATGAGAACAAA+AGG | - | chr6_3:76215455-76215474 | None:intergenic | 30.0% | |
| GCCAAAATAACATTATGATG+TGG | - | chr6_3:76215474-76215493 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGCAGCTTTTTCTT+TGG | + | chr6_3:76215521-76215540 | Msa0959480:intron | 30.0% |
| !! | TTTTTGGCAGCTTTTTCTTT+GGG | + | chr6_3:76215522-76215541 | Msa0959480:intron | 30.0% |
| GACTGAAGAAGTTAATGAGA+CGG | - | chr6_3:76208076-76208095 | None:intergenic | 35.0% | |
| !! | AACGTTATTTTCGGCGTTAA+CGG | - | chr6_3:76208153-76208172 | None:intergenic | 35.0% |
| TTAACGCCGAAAATAACGTT+TGG | + | chr6_3:76208153-76208172 | Msa0959480:CDS | 35.0% | |
| GAAGTAAATGATGACAGGAA+GGG | - | chr6_3:76208246-76208265 | None:intergenic | 35.0% | |
| ! | TTTGACACATCAGCATTTTC+CGG | - | chr6_3:76208461-76208480 | None:intergenic | 35.0% |
| CCAATAAAAACAAGCGTATC+CGG | - | chr6_3:76208776-76208795 | None:intergenic | 35.0% | |
| !!! | GATACGCTTGTTTTTATTGG+TGG | + | chr6_3:76208776-76208795 | Msa0959480:CDS | 35.0% |
| ! | CTCTTTTGCCAATCATTCAA+AGG | - | chr6_3:76208809-76208828 | None:intergenic | 35.0% |
| CTTTGAATGATTGGCAAAAG+AGG | + | chr6_3:76208807-76208826 | Msa0959480:CDS | 35.0% | |
| !! | GGCAAAAGAGGTATTATGAT+TGG | + | chr6_3:76208819-76208838 | Msa0959480:intron | 35.0% |
| TCAGTTGATTATGCAAGTCA+AGG | + | chr6_3:76208931-76208950 | Msa0959480:intron | 35.0% | |
| TGTGAGTGATCTTAATGACT+AGG | + | chr6_3:76209189-76209208 | Msa0959480:intron | 35.0% | |
| AAGCAACTGCTCATCAAATT+TGG | - | chr6_3:76209286-76209305 | None:intergenic | 35.0% | |
| !!! | ATTGCTTGGTTTTGTGTTAG+AGG | + | chr6_3:76209377-76209396 | Msa0959480:intron | 35.0% |
| !! | GGTTTGAAGATTTTTGGACA+AGG | + | chr6_3:76209417-76209436 | Msa0959480:intron | 35.0% |
| !! | TGAAGATTTTTGGACAAGGT+TGG | + | chr6_3:76209421-76209440 | Msa0959480:intron | 35.0% |
| !! | GAAGATTTTTGGACAAGGTT+GGG | + | chr6_3:76209422-76209441 | Msa0959480:intron | 35.0% |
| TTGCTCTTAATTGTGCACAT+TGG | + | chr6_3:76209599-76209618 | Msa0959480:intron | 35.0% | |
| !!! | ATCTCAAGGGGTTTTTTCTT+TGG | + | chr6_3:76209945-76209964 | Msa0959480:intron | 35.0% |
| !!! | TCTCAAGGGGTTTTTTCTTT+GGG | + | chr6_3:76209946-76209965 | Msa0959480:intron | 35.0% |
| ! | TCGAACTAGGATAAACCTTT+TGG | + | chr6_3:76209996-76210015 | Msa0959480:intron | 35.0% |
| CTTCAAACACACAAGATGAT+GGG | - | chr6_3:76210185-76210204 | None:intergenic | 35.0% | |
| ACTTCAAACACACAAGATGA+TGG | - | chr6_3:76210186-76210205 | None:intergenic | 35.0% | |
| GCCAATATGACTTCAAACAA+CGG | + | chr6_3:76210271-76210290 | Msa0959480:intron | 35.0% | |
| ! | ACCGTTGTTTGAAGTCATAT+TGG | - | chr6_3:76210275-76210294 | None:intergenic | 35.0% |
| TCCTATCTTTCAATGGTGAA+GGG | + | chr6_3:76210308-76210327 | Msa0959480:intron | 35.0% | |
| !! | ATGGTGAAGGGTATTGTTAT+TGG | + | chr6_3:76210320-76210339 | Msa0959480:intron | 35.0% |
| !! | AGGGAGTTGATTTTGACATT+TGG | + | chr6_3:76210368-76210387 | Msa0959480:intron | 35.0% |
| !! | GGGAGTTGATTTTGACATTT+GGG | + | chr6_3:76210369-76210388 | Msa0959480:intron | 35.0% |
| TCTTTGGTCCAAATAGATCT+TGG | - | chr6_3:76210457-76210476 | None:intergenic | 35.0% | |
| TTAGATACTTGAGTCGAAGT+TGG | + | chr6_3:76210780-76210799 | Msa0959480:intron | 35.0% | |
| GACTGCAATTTGTGAATCAA+AGG | + | chr6_3:76210814-76210833 | Msa0959480:intron | 35.0% | |
| CTTGTAGAAAGTTGGATTGA+AGG | - | chr6_3:76210981-76211000 | None:intergenic | 35.0% | |
| AATCCAACTTTCTACAAGTG+TGG | + | chr6_3:76210983-76211002 | Msa0959480:intron | 35.0% | |
| TTACCACACTTGTAGAAAGT+TGG | - | chr6_3:76210989-76211008 | None:intergenic | 35.0% | |
| ! | AAAGAGGGCTTATATCGATT+GGG | + | chr6_3:76211063-76211082 | Msa0959480:intron | 35.0% |
| ATGTTTCATTGCAAACCATG+AGG | + | chr6_3:76211138-76211157 | Msa0959480:intron | 35.0% | |
| TCCACTGTTGAATAAAAAGG+GGG | + | chr6_3:76211282-76211301 | Msa0959480:intron | 35.0% | |
| ! | GCTTTCATGCAAAAGTATGA+CGG | - | chr6_3:76211519-76211538 | None:intergenic | 35.0% |
| !! | TGATTGTTGACCGTTGATTT+AGG | + | chr6_3:76211684-76211703 | Msa0959480:intron | 35.0% |
| GACTTTCAACTAAAGTGAGT+TGG | + | chr6_3:76211818-76211837 | Msa0959480:intron | 35.0% | |
| ! | GTGTGTTGTTATTATGGTCT+TGG | - | chr6_3:76211847-76211866 | None:intergenic | 35.0% |
| ! | TGAGGAGTGTGTTGTTATTA+TGG | - | chr6_3:76211853-76211872 | None:intergenic | 35.0% |
| GTTATTGTTTGACCATTCCA+AGG | - | chr6_3:76211968-76211987 | None:intergenic | 35.0% | |
| TTGACGATCGTTATAGAAGA+TGG | - | chr6_3:76212165-76212184 | None:intergenic | 35.0% | |
| ! | CACAGTTACGGAAATTTTGT+TGG | - | chr6_3:76212261-76212280 | None:intergenic | 35.0% |
| CAACAAAATTTCCGTAACTG+TGG | + | chr6_3:76212259-76212278 | Msa0959480:intron | 35.0% | |
| ATTGTAAGTATCAGAGTGTG+AGG | + | chr6_3:76212382-76212401 | Msa0959480:intron | 35.0% | |
| ! | GTTTTGCAAAGATAAAGTGG+TGG | - | chr6_3:76212516-76212535 | None:intergenic | 35.0% |
| ! | TACTCATGGTTCTGTCAAAA+TGG | + | chr6_3:76212595-76212614 | Msa0959480:CDS | 35.0% |
| ! | ATAGAGTAATTGGTGTTTCC+AGG | + | chr6_3:76212679-76212698 | Msa0959480:intron | 35.0% |
| CAACTTTCATGCAGATAGTT+AGG | - | chr6_3:76212748-76212767 | None:intergenic | 35.0% | |
| !! | ATTCTAAAGCTCGTGTTTCA+TGG | - | chr6_3:76213084-76213103 | None:intergenic | 35.0% |
| ATATATCTCTATAGCCGAGA+CGG | + | chr6_3:76213122-76213141 | Msa0959480:intron | 35.0% | |
| AAAGAAACCATGTTAGCAGA+TGG | - | chr6_3:76213449-76213468 | None:intergenic | 35.0% | |
| ATCTGCTAACATGGTTTCTT+TGG | + | chr6_3:76213448-76213467 | Msa0959480:intron | 35.0% | |
| GAATTTAATCAATCCACTCC+AGG | - | chr6_3:76213609-76213628 | None:intergenic | 35.0% | |
| TAGCAGTCATTCTTCATTCA+AGG | - | chr6_3:76213821-76213840 | None:intergenic | 35.0% | |
| TGAATGAAGAATGACTGCTA+TGG | + | chr6_3:76213821-76213840 | Msa0959480:intron | 35.0% | |
| ! | GACCAAGTTTTTGATGTGAA+AGG | + | chr6_3:76214010-76214029 | Msa0959480:intron | 35.0% |
| TGCCTTTCACATCAAAAACT+TGG | - | chr6_3:76214015-76214034 | None:intergenic | 35.0% | |
| TTTGTCTCATGGTTGCTTAA+TGG | - | chr6_3:76214075-76214094 | None:intergenic | 35.0% | |
| ATTAAGCAACCATGAGACAA+AGG | + | chr6_3:76214074-76214093 | Msa0959480:intron | 35.0% | |
| AATGCGAAAACATGGGTATA+TGG | - | chr6_3:76214379-76214398 | None:intergenic | 35.0% | |
| GAAAAGACAATGCGAAAACA+TGG | - | chr6_3:76214387-76214406 | None:intergenic | 35.0% | |
| !! | GTTGTGCACTCTGAAATATA+TGG | + | chr6_3:76214434-76214453 | Msa0959480:intron | 35.0% |
| TTAATGTATGGTATGCGATC+TGG | + | chr6_3:76214546-76214565 | Msa0959480:intron | 35.0% | |
| AGATGCAGTCAATTAGTTGT+TGG | - | chr6_3:76214798-76214817 | None:intergenic | 35.0% | |
| !! | ATGAGACATAACTGATTTGG+TGG | + | chr6_3:76214937-76214956 | Msa0959480:intron | 35.0% |
| !! | ACTGATTTGGTGGTTTACTT+TGG | + | chr6_3:76214947-76214966 | Msa0959480:intron | 35.0% |
| TGCAAGTCATATCTGAATCA+TGG | - | chr6_3:76215002-76215021 | None:intergenic | 35.0% | |
| !! | TTGCACAATTTTTGGAGAGT+GGG | + | chr6_3:76215017-76215036 | Msa0959480:intron | 35.0% |
| AAAGTACGAAGGTTCTTTGA+AGG | + | chr6_3:76215051-76215070 | Msa0959480:intron | 35.0% | |
| ! | ACTAGATTAGTCACACCTAT+AGG | + | chr6_3:76215148-76215167 | Msa0959480:intron | 35.0% |
| !! | TATTGTGTATGTGGATTGGT+GGG | + | chr6_3:76215223-76215242 | Msa0959480:intron | 35.0% |
| TCACTATAGCAGAAAGAACA+TGG | - | chr6_3:76215362-76215381 | None:intergenic | 35.0% | |
| !!! | AATGTTATTTTGGCTTTGGC+TGG | + | chr6_3:76215480-76215499 | Msa0959480:intron | 35.0% |
| !!! | ATGTTATTTTGGCTTTGGCT+GGG | + | chr6_3:76215481-76215500 | Msa0959480:intron | 35.0% |
| !! | GCTGTTTTGCTTGGATTTTT+TGG | + | chr6_3:76215506-76215525 | Msa0959480:intron | 35.0% |
| !! | TTTTGGCAGCTTTTTCTTTG+GGG | + | chr6_3:76215523-76215542 | Msa0959480:intron | 35.0% |
| AAGAAGTGAAATGGTAGCTC+TGG | - | chr6_3:76208006-76208025 | None:intergenic | 40.0% | |
| TGAAGAAGTTAATGAGACGG+CGG | - | chr6_3:76208073-76208092 | None:intergenic | 40.0% | |
| GTTAACGGTAATGTCTTTGG+TGG | - | chr6_3:76208138-76208157 | None:intergenic | 40.0% | |
| GGAAGTAAATGATGACAGGA+AGG | - | chr6_3:76208247-76208266 | None:intergenic | 40.0% | |
| CCTGTCATCATTTACTTCCA+CGG | + | chr6_3:76208248-76208267 | Msa0959480:CDS | 40.0% | |
| !! | TAAAGCATCGTGGTAGATTG+AGG | - | chr6_3:76208300-76208319 | None:intergenic | 40.0% |
| TATCCGTCGCAATATGATGA+TGG | + | chr6_3:76208392-76208411 | Msa0959480:CDS | 40.0% | |
| TCTCCATCATCATATTGCGA+CGG | - | chr6_3:76208398-76208417 | None:intergenic | 40.0% | |
| ! | AGAGGCTGTGCTGAAATTTT+TGG | + | chr6_3:76208415-76208434 | Msa0959480:CDS | 40.0% |
| GTGTCAAAATGTTTCCTTGC+CGG | + | chr6_3:76208473-76208492 | Msa0959480:CDS | 40.0% | |
| !!! | GTATCCATTCAGCCGTTTTT+TGG | + | chr6_3:76208581-76208600 | Msa0959480:CDS | 40.0% |
| ATCAAGTTTAATCTCCGCCT+CGG | - | chr6_3:76208621-76208640 | None:intergenic | 40.0% | |
| ! | TTTGTCGGGTTTGGATTTTC+CGG | + | chr6_3:76208754-76208773 | Msa0959480:CDS | 40.0% |
| !!! | CCGGATACGCTTGTTTTTAT+TGG | + | chr6_3:76208773-76208792 | Msa0959480:CDS | 40.0% |
| GAGTGATCTTAATGACTAGG+AGG | + | chr6_3:76209192-76209211 | Msa0959480:intron | 40.0% | |
| !!! | CTTGGTTTTGTGTTAGAGGT+AGG | + | chr6_3:76209381-76209400 | Msa0959480:intron | 40.0% |
| AGAGGTAGGTGATGACAATT+TGG | + | chr6_3:76209395-76209414 | Msa0959480:intron | 40.0% | |
| GAGGTAGGTGATGACAATTT+GGG | + | chr6_3:76209396-76209415 | Msa0959480:intron | 40.0% | |
| !!! | CTCAAGGGGTTTTTTCTTTG+GGG | + | chr6_3:76209947-76209966 | Msa0959480:intron | 40.0% |
| ATGAGGGAAAAGACACCAAA+AGG | - | chr6_3:76210014-76210033 | None:intergenic | 40.0% | |
| CTCCTATCTTTCAATGGTGA+AGG | + | chr6_3:76210307-76210326 | Msa0959480:intron | 40.0% | |
| ACCCTTCACCATTGAAAGAT+AGG | - | chr6_3:76210312-76210331 | None:intergenic | 40.0% | |
| AATCTCGGACACCCTTAAAT+TGG | + | chr6_3:76210575-76210594 | Msa0959480:intron | 40.0% | |
| ACCTTCATGGGCCAATTTAA+GGG | - | chr6_3:76210589-76210608 | None:intergenic | 40.0% | |
| !! | AATCGACTCGTTGAAAGTGA+AGG | + | chr6_3:76210899-76210918 | Msa0959480:intron | 40.0% |
| AAAGTCTTGCTCTCAAAGCT+AGG | + | chr6_3:76210939-76210958 | Msa0959480:intron | 40.0% | |
| GAAAGAGGGCTTATATCGAT+TGG | + | chr6_3:76211062-76211081 | Msa0959480:intron | 40.0% | |
| TTTACCTCACATCTTCCTCA+TGG | - | chr6_3:76211156-76211175 | None:intergenic | 40.0% | |
| ! | TCCCCCTTTTTATTCAACAG+TGG | - | chr6_3:76211286-76211305 | None:intergenic | 40.0% |
| CGCCCAAAACATTAGGTTTA+GGG | - | chr6_3:76211660-76211679 | None:intergenic | 40.0% | |
| !! | CCTAAACCTAATGTTTTGGG+CGG | + | chr6_3:76211658-76211677 | Msa0959480:intron | 40.0% |
| !! | CTAAACCTAATGTTTTGGGC+GGG | + | chr6_3:76211659-76211678 | Msa0959480:intron | 40.0% |
| !! | GTGTTTGGTGCCTAAATCAA+CGG | - | chr6_3:76211697-76211716 | None:intergenic | 40.0% |
| ATCAACCGTTGAGATGTGTT+TGG | - | chr6_3:76211712-76211731 | None:intergenic | 40.0% | |
| TTCGAGATGAAGGAATGCTT+TGG | - | chr6_3:76212102-76212121 | None:intergenic | 40.0% | |
| AAGCATTCCTTCATCTCGAA+CGG | + | chr6_3:76212102-76212121 | Msa0959480:intron | 40.0% | |
| ATTACCAAAGAGGCTTGACT+CGG | - | chr6_3:76212138-76212157 | None:intergenic | 40.0% | |
| CAATGCGAAGAAGAAATGGA+TGG | - | chr6_3:76212219-76212238 | None:intergenic | 40.0% | |
| AGTGCAATGCGAAGAAGAAA+TGG | - | chr6_3:76212223-76212242 | None:intergenic | 40.0% | |
| AAGTATCAGAGTGTGAGGAT+TGG | + | chr6_3:76212387-76212406 | Msa0959480:intron | 40.0% | |
| TCTACATCAGAGCTTTCCTT+TGG | + | chr6_3:76212620-76212639 | Msa0959480:CDS | 40.0% | |
| ! | TAATTGGTGTTTCCAGGTAG+TGG | + | chr6_3:76212685-76212704 | Msa0959480:intron | 40.0% |
| TACTGATCCATCTGCTAACA+TGG | + | chr6_3:76213439-76213458 | Msa0959480:intron | 40.0% | |
| CATCGTTTGCTTACTTGCTT+TGG | + | chr6_3:76213560-76213579 | Msa0959480:intron | 40.0% | |
| TTGAGCATAAATACCTGGAG+TGG | + | chr6_3:76213593-76213612 | Msa0959480:intron | 40.0% | |
| ATAGGTACTACTGTCATACC+AGG | - | chr6_3:76213862-76213881 | None:intergenic | 40.0% | |
| TCTACGTATGACGTGAAATG+TGG | + | chr6_3:76214258-76214277 | Msa0959480:intron | 40.0% | |
| TACTTCAAGGATGATTGGCA+TGG | + | chr6_3:76214732-76214751 | Msa0959480:intron | 40.0% | |
| GTGGTTTACTTTGGCTAAGA+TGG | + | chr6_3:76214956-76214975 | Msa0959480:intron | 40.0% | |
| !! | CTTGCACAATTTTTGGAGAG+TGG | + | chr6_3:76215016-76215035 | Msa0959480:intron | 40.0% |
| GAAGGATTGTCTATCAAGCT+TGG | + | chr6_3:76215069-76215088 | Msa0959480:intron | 40.0% | |
| AGTTCACAGACCAAATCGTA+GGG | - | chr6_3:76215131-76215150 | None:intergenic | 40.0% | |
| TAGTTCACAGACCAAATCGT+AGG | - | chr6_3:76215132-76215151 | None:intergenic | 40.0% | |
| AAGAGAGGCTATTGTGTATG+TGG | + | chr6_3:76215214-76215233 | Msa0959480:intron | 40.0% | |
| AGGCTATTGTGTATGTGGAT+TGG | + | chr6_3:76215219-76215238 | Msa0959480:intron | 40.0% | |
| !! | CTATTGTGTATGTGGATTGG+TGG | + | chr6_3:76215222-76215241 | Msa0959480:intron | 40.0% |
| CTATAGCAGAAAGAACATGG+AGG | - | chr6_3:76215359-76215378 | None:intergenic | 40.0% | |
| TGTGATGCATGAGTATTCGT+GGG | + | chr6_3:76215386-76215405 | Msa0959480:CDS | 40.0% | |
| !!! | AGCTTTTTCTTTGGGGTGTT+GGG | + | chr6_3:76215530-76215549 | Msa0959480:intron | 40.0% |
| ACTCAACACCTCTTCTTCCT+TGG | + | chr6_3:76207976-76207995 | Msa0959480:CDS | 45.0% | |
| CCTAATGCTACTCCCGTTAA+CGG | + | chr6_3:76208107-76208126 | Msa0959480:CDS | 45.0% | |
| TTTGGTGGAAACGCCGTTAA+CGG | - | chr6_3:76208123-76208142 | None:intergenic | 45.0% | |
| GGCGTTAACGGTAATGTCTT+TGG | - | chr6_3:76208141-76208160 | None:intergenic | 45.0% | |
| GTAAATGATGACAGGAAGGG+AGG | - | chr6_3:76208243-76208262 | None:intergenic | 45.0% | |
| CCGTGGAAGTAAATGATGAC+AGG | - | chr6_3:76208251-76208270 | None:intergenic | 45.0% | |
| GTCATCATTTACTTCCACGG+CGG | + | chr6_3:76208251-76208270 | Msa0959480:CDS | 45.0% | |
| ATCGTGGTAGATTGAGGAAG+GGG | - | chr6_3:76208294-76208313 | None:intergenic | 45.0% | |
| CATCGTGGTAGATTGAGGAA+GGG | - | chr6_3:76208295-76208314 | None:intergenic | 45.0% | |
| TTTATGCCGTAGACTCTGCA+GGG | + | chr6_3:76208316-76208335 | Msa0959480:CDS | 45.0% | |
| AAACTTCCCTGCAGAGTCTA+CGG | - | chr6_3:76208325-76208344 | None:intergenic | 45.0% | |
| !! | GTCGCAATATGATGATGGAG+AGG | + | chr6_3:76208397-76208416 | Msa0959480:CDS | 45.0% |
| TGACAGTTCCGGTGCAAATT+TGG | + | chr6_3:76208496-76208515 | Msa0959480:CDS | 45.0% | |
| GTGATGTGCCAAATTTGCAC+CGG | - | chr6_3:76208507-76208526 | None:intergenic | 45.0% | |
| CTTTACAAACCCGAACTGCA+AGG | - | chr6_3:76208529-76208548 | None:intergenic | 45.0% | |
| ! | CAGTTCGGGTTTGTAAAGCT+GGG | + | chr6_3:76208531-76208550 | Msa0959480:CDS | 45.0% |
| TGGATACCAACCCGATAATC+CGG | - | chr6_3:76208568-76208587 | None:intergenic | 45.0% | |
| !!! | TCCATTCAGCCGTTTTTTGG+CGG | + | chr6_3:76208584-76208603 | Msa0959480:CDS | 45.0% |
| GAGGCGGAGATTAAACTTGA+TGG | + | chr6_3:76208620-76208639 | Msa0959480:CDS | 45.0% | |
| ! | TAAACTTGATGGATCGCCGT+TGG | + | chr6_3:76208631-76208650 | Msa0959480:CDS | 45.0% |
| TGAGTAGATTCAGGCAGATC+AGG | - | chr6_3:76208914-76208933 | None:intergenic | 45.0% | |
| GATGAGCAGTTGCTTATGCA+AGG | + | chr6_3:76209291-76209310 | Msa0959480:intron | 45.0% | |
| GCAGTTGCTTATGCAAGGTT+TGG | + | chr6_3:76209296-76209315 | Msa0959480:intron | 45.0% | |
| !! | GATTTTTGGACAAGGTTGGG+TGG | + | chr6_3:76209425-76209444 | Msa0959480:intron | 45.0% |
| !!! | TAGACGTAGCCTTGGTGTTT+TGG | + | chr6_3:76209972-76209991 | Msa0959480:intron | 45.0% |
| !!! | AGACGTAGCCTTGGTGTTTT+GGG | + | chr6_3:76209973-76209992 | Msa0959480:intron | 45.0% |
| TAGTTCGACCCAAAACACCA+AGG | - | chr6_3:76209984-76210003 | None:intergenic | 45.0% | |
| !! | TTGGTGTTTTGGGTCGAACT+AGG | + | chr6_3:76209983-76210002 | Msa0959480:intron | 45.0% |
| TGCAACCGCCAAAGAAATCT+CGG | + | chr6_3:76210560-76210579 | Msa0959480:intron | 45.0% | |
| !! | AAGGGTGTCCGAGATTTCTT+TGG | - | chr6_3:76210571-76210590 | None:intergenic | 45.0% |
| ACCCTTAAATTGGCCCATGA+AGG | + | chr6_3:76210585-76210604 | Msa0959480:intron | 45.0% | |
| CACCTTCATGGGCCAATTTA+AGG | - | chr6_3:76210590-76210609 | None:intergenic | 45.0% | |
| CAAACCATGAGGAAGATGTG+AGG | + | chr6_3:76211149-76211168 | Msa0959480:intron | 45.0% | |
| CCGCCCAAAACATTAGGTTT+AGG | - | chr6_3:76211661-76211680 | None:intergenic | 45.0% | |
| TCATTCCCGCCCAAAACATT+AGG | - | chr6_3:76211667-76211686 | None:intergenic | 45.0% | |
| AGGCACCAAACACATCTCAA+CGG | + | chr6_3:76211704-76211723 | Msa0959480:intron | 45.0% | |
| TAACAACACACTCCTCAACG+TGG | + | chr6_3:76211856-76211875 | Msa0959480:intron | 45.0% | |
| TAAATGCTACCTCCACGTTG+AGG | - | chr6_3:76211871-76211890 | None:intergenic | 45.0% | |
| AGGTTCACTGCACTATGTGT+TGG | - | chr6_3:76211939-76211958 | None:intergenic | 45.0% | |
| GAACCTACTACTCCTTGGAA+TGG | + | chr6_3:76211953-76211972 | Msa0959480:intron | 45.0% | |
| TGACCATTCCAAGGAGTAGT+AGG | - | chr6_3:76211959-76211978 | None:intergenic | 45.0% | |
| ATTCGAACCGTTCGAGATGA+AGG | - | chr6_3:76212112-76212131 | None:intergenic | 45.0% | |
| AGATGGTGCGATTACCAAAG+AGG | - | chr6_3:76212148-76212167 | None:intergenic | 45.0% | |
| ACAGCTGCATTTCTTGCCAA+AGG | - | chr6_3:76212639-76212658 | None:intergenic | 45.0% | |
| TGGCAAGAAATGCAGCTGTT+TGG | + | chr6_3:76212640-76212659 | Msa0959480:CDS | 45.0% | |
| ATGTATGGTATGCGATCTGG+TGG | + | chr6_3:76214549-76214568 | Msa0959480:intron | 45.0% | |
| ! | TGATGTTGGTTGGCGTGTTT+GGG | + | chr6_3:76215246-76215265 | Msa0959480:intron | 45.0% |
| AGCACCAAAAGGAAAGCCAA+AGG | - | chr6_3:76215310-76215329 | None:intergenic | 45.0% | |
| AGGGAGATTTCAGCACCAAA+AGG | - | chr6_3:76215321-76215340 | None:intergenic | 45.0% | |
| ! | TGGTGCTGAAATCTCCCTAT+CGG | + | chr6_3:76215323-76215342 | Msa0959480:CDS | 45.0% |
| CTGTGATGCATGAGTATTCG+TGG | + | chr6_3:76215385-76215404 | Msa0959480:CDS | 45.0% | |
| !!! | CAGCTTTTTCTTTGGGGTGT+TGG | + | chr6_3:76215529-76215548 | Msa0959480:intron | 45.0% |
| !!! | TTTTTCTTTGGGGTGTTGGG+AGG | + | chr6_3:76215533-76215552 | Msa0959480:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTTGTAT+TGG | + | chr6_3:76209823-76209842 | Msa0959480:intron | 5.0% |
| !!! | ATTTATTTTTTATTTGTATT+AGG | + | chr6_3:76211422-76211441 | Msa0959480:intron | 5.0% |
| ! | CTGGCTTTCCAAGGAAGAAG+AGG | - | chr6_3:76207987-76208006 | None:intergenic | 50.0% |
| !! | ATGGTAGCTCTGGCTTTCCA+AGG | - | chr6_3:76207996-76208015 | None:intergenic | 50.0% |
| GTTAATGAGACGGCGGTTGA+CGG | - | chr6_3:76208066-76208085 | None:intergenic | 50.0% | |
| AACGGGAGTAGCATTAGGTG+AGG | - | chr6_3:76208105-76208124 | None:intergenic | 50.0% | |
| CCGTTAACGGGAGTAGCATT+AGG | - | chr6_3:76208110-76208129 | None:intergenic | 50.0% | |
| TTGGTGGAAACGCCGTTAAC+GGG | - | chr6_3:76208122-76208141 | None:intergenic | 50.0% | |
| CTCTTTACTCCCACTGTTGC+CGG | + | chr6_3:76208182-76208201 | Msa0959480:CDS | 50.0% | |
| ATGACTTCTCCGGCAACAGT+GGG | - | chr6_3:76208194-76208213 | None:intergenic | 50.0% | |
| ACTGTTGCCGGAGAAGTCAT+CGG | + | chr6_3:76208194-76208213 | Msa0959480:CDS | 50.0% | |
| ACCATCTCCGATGACTTCTC+CGG | - | chr6_3:76208204-76208223 | None:intergenic | 50.0% | |
| ATCATTTACTTCCACGGCGG+CGG | + | chr6_3:76208254-76208273 | Msa0959480:CDS | 50.0% | |
| GCATCGTGGTAGATTGAGGA+AGG | - | chr6_3:76208296-76208315 | None:intergenic | 50.0% | |
| !! | GTCTACGGCATAAAGCATCG+TGG | - | chr6_3:76208310-76208329 | None:intergenic | 50.0% |
| CTTTATGCCGTAGACTCTGC+AGG | + | chr6_3:76208315-76208334 | Msa0959480:CDS | 50.0% | |
| TGTCAACTACCGCCTTACAC+CGG | + | chr6_3:76208361-76208380 | Msa0959480:CDS | 50.0% | |
| GATATCGATGCTCCGGTGTA+AGG | - | chr6_3:76208376-76208395 | None:intergenic | 50.0% | |
| ATTTGCACCGGAACTGTCAC+CGG | - | chr6_3:76208495-76208514 | None:intergenic | 50.0% | |
| TGGCACATCACCTTGCAGTT+CGG | + | chr6_3:76208516-76208535 | Msa0959480:CDS | 50.0% | |
| ! | GCAGTTCGGGTTTGTAAAGC+TGG | + | chr6_3:76208530-76208549 | Msa0959480:CDS | 50.0% |
| CTCCGGGAAATCCGGATTAT+CGG | + | chr6_3:76208554-76208573 | Msa0959480:CDS | 50.0% | |
| TCCGGGAAATCCGGATTATC+GGG | + | chr6_3:76208555-76208574 | Msa0959480:CDS | 50.0% | |
| ACCCGATAATCCGGATTTCC+CGG | - | chr6_3:76208559-76208578 | None:intergenic | 50.0% | |
| GGAAATCCGGATTATCGGGT+TGG | + | chr6_3:76208559-76208578 | Msa0959480:CDS | 50.0% | |
| ACCGCCAAAAAACGGCTGAA+TGG | - | chr6_3:76208588-76208607 | None:intergenic | 50.0% | |
| CGTTCCTCACCGCCAAAAAA+CGG | - | chr6_3:76208596-76208615 | None:intergenic | 50.0% | |
| !!! | CGTTTTTTGGCGGTGAGGAA+CGG | + | chr6_3:76208594-76208613 | Msa0959480:CDS | 50.0% |
| GTCCTTACCATCGACACCAA+CGG | - | chr6_3:76208650-76208669 | None:intergenic | 50.0% | |
| !! | GTTGGTGTCGATGGTAAGGA+CGG | + | chr6_3:76208649-76208668 | Msa0959480:CDS | 50.0% |
| TGTCGATGGTAAGGACGGAT+TGG | + | chr6_3:76208654-76208673 | Msa0959480:CDS | 50.0% | |
| !! | GTGGTGGAAGGTGTTCTTAC+CGG | + | chr6_3:76208676-76208695 | Msa0959480:CDS | 50.0% |
| !! | TGGAAGGTGTTCTTACCGGA+GGG | + | chr6_3:76208680-76208699 | Msa0959480:CDS | 50.0% |
| ATCGAACCGAGATCATGACG+CGG | + | chr6_3:76208703-76208722 | Msa0959480:CDS | 50.0% | |
| CATTCACCGCGTCATGATCT+CGG | - | chr6_3:76208712-76208731 | None:intergenic | 50.0% | |
| CATGACGCGGTGAATGTAAG+CGG | + | chr6_3:76208716-76208735 | Msa0959480:CDS | 50.0% | |
| ATGACGCGGTGAATGTAAGC+GGG | + | chr6_3:76208717-76208736 | Msa0959480:CDS | 50.0% | |
| GGTGTCCGAGATTTCTTTGG+CGG | - | chr6_3:76210568-76210587 | None:intergenic | 50.0% | |
| AGGTGCGATCGAGGTCAAAA+AGG | + | chr6_3:76210605-76210624 | Msa0959480:intron | 50.0% | |
| GCAGTGAACCTACTACTCCT+TGG | + | chr6_3:76211948-76211967 | Msa0959480:intron | 50.0% | |
| GTGTGAGGATTGGAGTACGA+TGG | + | chr6_3:76212397-76212416 | Msa0959480:intron | 50.0% | |
| TGGCATCAAGTAAGCCGTCT+CGG | - | chr6_3:76213139-76213158 | None:intergenic | 50.0% | |
| CAAGGATGATTGGCATGGCA+TGG | + | chr6_3:76214737-76214756 | Msa0959480:intron | 50.0% | |
| !! | TGTGGATTGGTGGGTGATGT+TGG | + | chr6_3:76215232-76215251 | Msa0959480:intron | 50.0% |
| ! | GATTGGTGGGTGATGTTGGT+TGG | + | chr6_3:76215236-76215255 | Msa0959480:intron | 50.0% |
| ! | GTGATGTTGGTTGGCGTGTT+TGG | + | chr6_3:76215245-76215264 | Msa0959480:intron | 50.0% |
| ! | TGGTTGGCGTGTTTGGGTTT+AGG | + | chr6_3:76215252-76215271 | Msa0959480:intron | 50.0% |
| !!! | GCTGCCTTTGGCTTTCCTTT+TGG | + | chr6_3:76215303-76215322 | Msa0959480:CDS | 50.0% |
| GAGGCATAGCAGAACCGATA+GGG | - | chr6_3:76215340-76215359 | None:intergenic | 50.0% | |
| GGCGCTTCTTCTCGCTCTAA+CGG | + | chr6_3:76208038-76208057 | Msa0959480:CDS | 55.0% | |
| GATGACTTCTCCGGCAACAG+TGG | - | chr6_3:76208195-76208214 | None:intergenic | 55.0% | |
| GGAGAAGTCATCGGAGATGG+TGG | + | chr6_3:76208203-76208222 | Msa0959480:CDS | 55.0% | |
| !! | AGGAAGGGAGGCTGTTTTGG+TGG | - | chr6_3:76208231-76208250 | None:intergenic | 55.0% |
| ! | GACAGGAAGGGAGGCTGTTT+TGG | - | chr6_3:76208234-76208253 | None:intergenic | 55.0% |
| TCATTTACTTCCACGGCGGC+GGG | + | chr6_3:76208255-76208274 | Msa0959480:CDS | 55.0% | |
| ATCGATGCTCCGGTGTAAGG+CGG | - | chr6_3:76208373-76208392 | None:intergenic | 55.0% | |
| TGCGACGGATATCGATGCTC+CGG | - | chr6_3:76208383-76208402 | None:intergenic | 55.0% | |
| TTCCTTGCCGGTGACAGTTC+CGG | + | chr6_3:76208485-76208504 | Msa0959480:CDS | 55.0% | |
| GGCACATCACCTTGCAGTTC+GGG | + | chr6_3:76208517-76208536 | Msa0959480:CDS | 55.0% | |
| GGGTTTGTAAAGCTGGGCTC+CGG | + | chr6_3:76208537-76208556 | Msa0959480:CDS | 55.0% | |
| GGTTTGTAAAGCTGGGCTCC+GGG | + | chr6_3:76208538-76208557 | Msa0959480:CDS | 55.0% | |
| !!! | TCAGCCGTTTTTTGGCGGTG+AGG | + | chr6_3:76208589-76208608 | Msa0959480:CDS | 55.0% |
| !! | CGATGGTAAGGACGGATTGG+TGG | + | chr6_3:76208657-76208676 | Msa0959480:CDS | 55.0% |
| !! | TGGTAAGGACGGATTGGTGG+TGG | + | chr6_3:76208660-76208679 | Msa0959480:CDS | 55.0% |
| !! | AAGGACGGATTGGTGGTGGA+AGG | + | chr6_3:76208664-76208683 | Msa0959480:CDS | 55.0% |
| !! | GTGGAAGGTGTTCTTACCGG+AGG | + | chr6_3:76208679-76208698 | Msa0959480:CDS | 55.0% |
| ! | TGATCTCGGTTCGATCCCTC+CGG | - | chr6_3:76208698-76208717 | None:intergenic | 55.0% |
| GAATGTAAGCGGGCCGAATG+CGG | + | chr6_3:76208727-76208746 | Msa0959480:CDS | 55.0% | |
| GCCGAATGCGGAGGATTTGT+CGG | + | chr6_3:76208739-76208758 | Msa0959480:CDS | 55.0% | |
| CCCGACAAATCCTCCGCATT+CGG | - | chr6_3:76208743-76208762 | None:intergenic | 55.0% | |
| CCGAATGCGGAGGATTTGTC+GGG | + | chr6_3:76208740-76208759 | Msa0959480:CDS | 55.0% | |
| TGCGGAGGATTTGTCGGGTT+TGG | + | chr6_3:76208745-76208764 | Msa0959480:CDS | 55.0% | |
| TTGGGGACTAGACGTAGCCT+TGG | + | chr6_3:76209964-76209983 | Msa0959480:intron | 55.0% | |
| GACCTCGATCGCACCTTCAT+GGG | - | chr6_3:76210601-76210620 | None:intergenic | 55.0% | |
| TGACCTCGATCGCACCTTCA+TGG | - | chr6_3:76210602-76210621 | None:intergenic | 55.0% | |
| CAGGGAGCAGCTCAATAGCT+TGG | - | chr6_3:76211737-76211756 | None:intergenic | 55.0% | |
| CAACACACTCCTCAACGTGG+AGG | + | chr6_3:76211859-76211878 | Msa0959480:intron | 55.0% | |
| !! | ACCAAAGAGGCTTGACTCGG+CGG | - | chr6_3:76212135-76212154 | None:intergenic | 55.0% |
| GTGAGGACTGCCCTACGATT+TGG | + | chr6_3:76215118-76215137 | Msa0959480:intron | 55.0% | |
| TGCTGCAGTTTCAGCAGCTG+TGG | + | chr6_3:76215278-76215297 | Msa0959480:CDS | 55.0% | |
| TGCAGTTTCAGCAGCTGTGG+TGG | + | chr6_3:76215281-76215300 | Msa0959480:CDS | 55.0% | |
| ! | GGAGGCATAGCAGAACCGAT+AGG | - | chr6_3:76215341-76215360 | None:intergenic | 55.0% |
| !!! | GGCTGGGTTGCTGTTTTGCT+TGG | + | chr6_3:76215497-76215516 | Msa0959480:intron | 55.0% |
| GCCGGAGAAGTCATCGGAGA+TGG | + | chr6_3:76208200-76208219 | Msa0959480:CDS | 60.0% | |
| AAGCTGGGCTCCGGGAAATC+CGG | + | chr6_3:76208546-76208565 | Msa0959480:CDS | 60.0% | |
| !! | TGGATCGCCGTTGGTGTCGA+TGG | + | chr6_3:76208640-76208659 | Msa0959480:CDS | 60.0% |
| !! | CGCCGTTGGTGTCGATGGTA+AGG | + | chr6_3:76208645-76208664 | Msa0959480:CDS | 60.0% |
| TCCGCCGAGTCAAGCCTCTT+TGG | + | chr6_3:76212131-76212150 | Msa0959480:intron | 60.0% | |
| GAAAACTGAACCCGCCGCCG+TGG | - | chr6_3:76208268-76208287 | None:intergenic | 65.0% | |
| CACCGGAACTGTCACCGGCA+AGG | - | chr6_3:76208490-76208509 | None:intergenic | 65.0% | |
| TGTAAGCGGGCCGAATGCGG+AGG | + | chr6_3:76208730-76208749 | Msa0959480:CDS | 65.0% | |
| ! | GGCCCATGAAGGTGCGATCG+AGG | + | chr6_3:76210596-76210615 | Msa0959480:intron | 65.0% |
| GCAGCTGTGGTGGCTGCCTT+TGG | + | chr6_3:76215291-76215310 | Msa0959480:CDS | 65.0% | |
| TGGCGGTGAGGAACGGACCG+AGG | + | chr6_3:76208601-76208620 | Msa0959480:CDS | 70.0% | |
| CGGTGAGGAACGGACCGAGG+CGG | + | chr6_3:76208604-76208623 | Msa0959480:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 76207969 | 76215564 | 76207969 | ID=Msa0959480;Name=Msa0959480 |
| chr6_3 | mRNA | 76207969 | 76215564 | 76207969 | ID=Msa0959480-mRNA-1;Parent=Msa0959480;Name=Msa0959480-mRNA-1;_AED=0.29;_eAED=0.31;_QI=0|0|0|0.75|1|1|4|0|378 |
| chr6_3 | exon | 76207969 | 76208828 | 76207969 | ID=Msa0959480-mRNA-1:exon:13703;Parent=Msa0959480-mRNA-1 |
| chr6_3 | exon | 76212581 | 76212690 | 76212581 | ID=Msa0959480-mRNA-1:exon:13704;Parent=Msa0959480-mRNA-1 |
| chr6_3 | exon | 76215274 | 76215407 | 76215274 | ID=Msa0959480-mRNA-1:exon:13705;Parent=Msa0959480-mRNA-1 |
| chr6_3 | exon | 76215532 | 76215564 | 76215532 | ID=Msa0959480-mRNA-1:exon:13706;Parent=Msa0959480-mRNA-1 |
| chr6_3 | CDS | 76207969 | 76208828 | 76207969 | ID=Msa0959480-mRNA-1:cds;Parent=Msa0959480-mRNA-1 |
| chr6_3 | CDS | 76212581 | 76212690 | 76212581 | ID=Msa0959480-mRNA-1:cds;Parent=Msa0959480-mRNA-1 |
| chr6_3 | CDS | 76215274 | 76215407 | 76215274 | ID=Msa0959480-mRNA-1:cds;Parent=Msa0959480-mRNA-1 |
| chr6_3 | CDS | 76215532 | 76215564 | 76215532 | ID=Msa0959480-mRNA-1:cds;Parent=Msa0959480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
