Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458770 | XP_003599303.2 | 94.474 | 380 | 21 | 0 | 1 | 380 | 1 | 380 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458770 | sp|Q8R3F5|FABD_MOUSE | 39.869 | 306 | 168 | 5 | 79 | 373 | 63 | 363 | 9.80e-70 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458770 | G7J0N6 | 94.474 | 380 | 21 | 0 | 1 | 380 | 1 | 380 | 0.0 | 717 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0413720 | Msa0458770 | 0.806552 | 7.781026e-50 | -8.615850e-47 |
| Msa0458770 | Msa0505370 | 0.809885 | 1.516704e-50 | -8.615850e-47 |
| Msa0458770 | Msa1226620 | 0.804203 | 2.417672e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458770 | MtrunA17_Chr3g0106261 | 94.474 | 380 | 21 | 0 | 1 | 380 | 1 | 380 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458770 | AT2G30200.1 | 80.814 | 344 | 65 | 1 | 38 | 380 | 50 | 393 | 0.0 | 555 |
| Msa0458770 | AT2G30200.2 | 80.068 | 296 | 58 | 1 | 38 | 332 | 50 | 345 | 1.64e-167 | 473 |
Find 122 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCGTTTGCTGGGGCTTTC+AGG | 0.094720 | 3_3:+54845944 | Msa0458770:CDS |
| CAAGAAAGCCAATGAGATTT+TGG | 0.134267 | 3_3:+54844345 | Msa0458770:CDS |
| CTTCTTGATGTATGCATTAA+TGG | 0.181932 | 3_3:+54844465 | Msa0458770:CDS |
| GCATTCAAATGTTGGATTTA+TGG | 0.185585 | 3_3:-54843926 | None:intergenic |
| TTATTTCATCTAAAATTTAT+TGG | 0.214877 | 3_3:-54847848 | None:intergenic |
| TATACTGCTCTGGCGTTTGC+TGG | 0.229112 | 3_3:+54845934 | Msa0458770:CDS |
| CATTCAAATGTTGGATTTAT+GGG | 0.229579 | 3_3:-54843925 | None:intergenic |
| GTGGCCAAAACCCTAGATTT+AGG | 0.242064 | 3_3:-54844089 | None:intergenic |
| CAGGTGCGCCTGGCTGTTGC+AGG | 0.273267 | 3_3:+54847046 | Msa0458770:intron |
| GTGATCTAACTTATTCAAAA+TGG | 0.282898 | 3_3:-54847745 | None:intergenic |
| CGTAAACTTTCTACCTTTCC+AGG | 0.283273 | 3_3:-54847382 | None:intergenic |
| CCCACAATTTCCCTAAATCT+AGG | 0.310590 | 3_3:+54844078 | Msa0458770:CDS |
| TTTCCCTAAATCTAGGGTTT+TGG | 0.315442 | 3_3:+54844085 | Msa0458770:CDS |
| CCTTACTGGACATAGGTAAT+TGG | 0.315959 | 3_3:-54846769 | None:intergenic |
| CTTTGAAGATGGACTGAAAT+TGG | 0.319783 | 3_3:+54846487 | Msa0458770:CDS |
| TGCAATATTGTAGTTTGTAT+TGG | 0.335872 | 3_3:-54847583 | None:intergenic |
| ATCTGAACCTTCTCTGCTTC+AGG | 0.337088 | 3_3:-54846744 | None:intergenic |
| GCTGTCTCTGGAGGCATAAA+AGG | 0.342232 | 3_3:+54846899 | Msa0458770:CDS |
| AATATCTTCTTTATTGTGTC+AGG | 0.351899 | 3_3:-54847193 | None:intergenic |
| TGGAAATGACTGGTATTCTT+GGG | 0.360068 | 3_3:-54847144 | None:intergenic |
| TGCTGCTGTTGAGCTACTTC+GGG | 0.360693 | 3_3:+54845846 | Msa0458770:CDS |
| TTCTTGATGTATGCATTAAT+GGG | 0.361976 | 3_3:+54844466 | Msa0458770:CDS |
| TTGGAAATGACTGGTATTCT+TGG | 0.363800 | 3_3:-54847145 | None:intergenic |
| TCGGAGCTTAAGAAGTTTGC+AGG | 0.367846 | 3_3:+54847539 | Msa0458770:exon |
| TGTACTCTTCAGGTTATTGC+TGG | 0.368098 | 3_3:+54847475 | Msa0458770:intron |
| TGCTTCAGGCACTTCCAGAT+TGG | 0.373402 | 3_3:-54846730 | None:intergenic |
| GTTCGATTTGAGAAGAAGAT+AGG | 0.378805 | 3_3:-54844041 | None:intergenic |
| ACTGTTGTTTCCCATTGAAC+AGG | 0.383548 | 3_3:-54847313 | None:intergenic |
| CCCTAGATTTAGGGAAATTG+TGG | 0.390240 | 3_3:-54844079 | None:intergenic |
| TGGCCAAAACCCTAGATTTA+GGG | 0.391319 | 3_3:-54844088 | None:intergenic |
| TTATTCAAAATGGAACCTAT+TGG | 0.401232 | 3_3:-54847735 | None:intergenic |
| CAGGTTCCATAAAACTAGTA+TGG | 0.401234 | 3_3:-54847075 | None:intergenic |
| TGCTGGAATTGTCAAAAGAA+TGG | 0.402849 | 3_3:+54847492 | Msa0458770:CDS |
| ATACTGCTCTGGCGTTTGCT+GGG | 0.405436 | 3_3:+54845935 | Msa0458770:CDS |
| TGCGTTTCTCTTCCCTGGTC+AGG | 0.406940 | 3_3:+54844175 | Msa0458770:CDS |
| TGACACAATAAAGAAGATAT+TGG | 0.409601 | 3_3:+54847195 | Msa0458770:CDS |
| GAAATGTTGCATTCAAATGT+TGG | 0.410318 | 3_3:-54843934 | None:intergenic |
| AAAGAAGATATTGGCACAAC+AGG | 0.412880 | 3_3:+54847204 | Msa0458770:CDS |
| CTCATGGTGACAGGTGCGCC+TGG | 0.419828 | 3_3:+54847036 | Msa0458770:intron |
| GTTTCATGTGGTTTGAGCTT+AGG | 0.423256 | 3_3:+54845907 | Msa0458770:CDS |
| TTGCTGCTGTTGAGCTACTT+CGG | 0.426896 | 3_3:+54845845 | Msa0458770:CDS |
| TGAGAAGAAGATAGGGGAAA+AGG | 0.427161 | 3_3:-54844033 | None:intergenic |
| CAGCAAGACTTGTGACATAC+AGG | 0.430360 | 3_3:-54845828 | None:intergenic |
| TCCAATGCGTTTCTCTTCCC+TGG | 0.436188 | 3_3:+54844170 | Msa0458770:CDS |
| GCTGAAGAAAAGCTATGAAC+TGG | 0.436541 | 3_3:+54847357 | Msa0458770:CDS |
| GACTGAAATTGGTGAAACTA+AGG | 0.439212 | 3_3:+54846498 | Msa0458770:CDS |
| AGGTTACTTACCCTGTTCAA+TGG | 0.439364 | 3_3:+54847302 | Msa0458770:intron |
| AGCCTTGAAAGACTTCGCTT+TGG | 0.442255 | 3_3:-54846939 | None:intergenic |
| GTTGTGTGATGCAGCCAATC+TGG | 0.442813 | 3_3:+54846716 | Msa0458770:CDS |
| AGAAGAAGACATTGTAGAGA+TGG | 0.442899 | 3_3:-54843997 | None:intergenic |
| CCACAATTTCCCTAAATCTA+GGG | 0.450894 | 3_3:+54844079 | Msa0458770:CDS |
| TTCAAAATGGAACCTATTGG+TGG | 0.458831 | 3_3:-54847732 | None:intergenic |
| GGAACCTGCAGTGTCAAGAT+TGG | 0.459211 | 3_3:+54847090 | Msa0458770:CDS |
| TAAATACCCCAAAATCTCAT+TGG | 0.463483 | 3_3:-54844353 | None:intergenic |
| TGTTGGTTGAAAATTTGAAA+TGG | 0.463497 | 3_3:+54847872 | Msa0458770:three_prime_UTR |
| TTCGATTTGAGAAGAAGATA+GGG | 0.463930 | 3_3:-54844040 | None:intergenic |
| GGTTACTTACCCTGTTCAAT+GGG | 0.466160 | 3_3:+54847303 | Msa0458770:intron |
| TAGGGAAACTATGCTGTCTC+TGG | 0.470485 | 3_3:+54846887 | Msa0458770:intron |
| GCTTCCAATCTTGACACTGC+AGG | 0.476548 | 3_3:-54847094 | None:intergenic |
| CCTAGATTTAGGGAAATTGT+GGG | 0.484174 | 3_3:-54844078 | None:intergenic |
| GAAGAAGATAGGGGAAAAGG+AGG | 0.491071 | 3_3:-54844030 | None:intergenic |
| AGCTACAGAAGCTTCATGAA+TGG | 0.493766 | 3_3:-54844135 | None:intergenic |
| AAAAGCTATGAACTGGGACC+TGG | 0.496969 | 3_3:+54847364 | Msa0458770:CDS |
| AGCCAAAGCGAAGTCTTTCA+AGG | 0.506804 | 3_3:+54846937 | Msa0458770:CDS |
| GGAAAGCGCCTGCAACAGCC+AGG | 0.507270 | 3_3:-54847054 | None:intergenic |
| TGGCTGCATCACACAACTGC+TGG | 0.510466 | 3_3:-54846710 | None:intergenic |
| GGTGCACAAGCTGTTGGAAT+GGG | 0.510482 | 3_3:+54844283 | Msa0458770:CDS |
| CGATTTGTAAGCTTTGAAGA+TGG | 0.513263 | 3_3:+54846476 | Msa0458770:intron |
| TGCGGAAAATATACCTGACC+AGG | 0.515702 | 3_3:-54844188 | None:intergenic |
| CTTAGGAGAGTATACTGCTC+TGG | 0.517475 | 3_3:+54845924 | Msa0458770:CDS |
| GAATTCAACAGTTATCAGTC+AGG | 0.518626 | 3_3:+54844503 | Msa0458770:CDS |
| ACTAAGGGGTGAAGCCATGC+AGG | 0.520103 | 3_3:+54846514 | Msa0458770:CDS |
| GCATTTACGTTGGAAATGAC+TGG | 0.530559 | 3_3:-54847154 | None:intergenic |
| TCTTGGGGTTCTAATGTCTG+TGG | 0.536650 | 3_3:-54847128 | None:intergenic |
| CTATGAACTGGGACCTGGAA+AGG | 0.537795 | 3_3:+54847369 | Msa0458770:CDS |
| TGAGCTACTTCGGGCACGTG+AGG | 0.538884 | 3_3:+54845855 | Msa0458770:CDS |
| GGAAATGACTGGTATTCTTG+GGG | 0.548400 | 3_3:-54847143 | None:intergenic |
| GATGCTGCTGATGCTACTAA+AGG | 0.549322 | 3_3:+54846648 | Msa0458770:CDS |
| TACTGCTCTGGCGTTTGCTG+GGG | 0.549969 | 3_3:+54845936 | Msa0458770:CDS |
| ACCAGGGAAGAGAAACGCAT+TGG | 0.557047 | 3_3:-54844171 | None:intergenic |
| GGAAGTGCCTGAAGCAGAGA+AGG | 0.557166 | 3_3:+54846737 | Msa0458770:CDS |
| CATAAAAGGAATAGAAGTGG+TGG | 0.563259 | 3_3:+54846913 | Msa0458770:CDS |
| GTGAAGACTCTTCTATCCAA+GGG | 0.563734 | 3_3:+54847334 | Msa0458770:CDS |
| CATGGTTAGTGTGGTAGGAC+TGG | 0.568523 | 3_3:+54846674 | Msa0458770:CDS |
| TTGTACAAAACTGCAGCAGA+AGG | 0.572446 | 3_3:-54844325 | None:intergenic |
| CTGTTGTTTCCCATTGAACA+GGG | 0.572523 | 3_3:-54847312 | None:intergenic |
| GAGCTACTTCGGGCACGTGA+GGG | 0.576524 | 3_3:+54845856 | Msa0458770:CDS |
| GATTCTGTTGATGTTTCATG+TGG | 0.577223 | 3_3:+54845895 | Msa0458770:CDS |
| TCGATTTGAGAAGAAGATAG+GGG | 0.577588 | 3_3:-54844039 | None:intergenic |
| CTACTTCGGGCACGTGAGGG+AGG | 0.580356 | 3_3:+54845859 | Msa0458770:CDS |
| AGTGAAGACTCTTCTATCCA+AGG | 0.584582 | 3_3:+54847333 | Msa0458770:CDS |
| GCAGGACATTGCTATGTGTG+TGG | 0.585638 | 3_3:+54847557 | Msa0458770:three_prime_UTR |
| ATTGTGTCAGGATCTGTATG+TGG | 0.585678 | 3_3:-54847181 | None:intergenic |
| AAGAAGATAGGGGAAAAGGA+GGG | 0.589273 | 3_3:-54844029 | None:intergenic |
| GGGTGCACAAGCTGTTGGAA+TGG | 0.590984 | 3_3:+54844282 | Msa0458770:intron |
| CTGAAGAAAAGCTATGAACT+GGG | 0.594251 | 3_3:+54847358 | Msa0458770:CDS |
| GAAGTCTTTCAAGGCTCGAA+TGG | 0.594481 | 3_3:+54846946 | Msa0458770:CDS |
| GGCGCCATGGTTAGTGTGGT+AGG | 0.596709 | 3_3:+54846669 | Msa0458770:CDS |
| TCAAGAACCTTACTGGACAT+AGG | 0.602304 | 3_3:-54846776 | None:intergenic |
| AATGGAAGATTGAGATCCAG+TGG | 0.603030 | 3_3:-54844117 | None:intergenic |
| TTGTAGGGTGCACAAGCTGT+TGG | 0.608275 | 3_3:+54844277 | Msa0458770:intron |
| TAAAGGCGCCATGGTTAGTG+TGG | 0.608972 | 3_3:+54846665 | Msa0458770:CDS |
| TTGAGATCCAGTGGAGATGG+TGG | 0.613121 | 3_3:-54844108 | None:intergenic |
| AGACTTGTGACATACAGGGC+AGG | 0.626537 | 3_3:-54845823 | None:intergenic |
| TGATGCTACTAAAGGCGCCA+TGG | 0.630753 | 3_3:+54846656 | Msa0458770:CDS |
| GGAAACTATGCTGTCTCTGG+AGG | 0.631276 | 3_3:+54846890 | Msa0458770:CDS |
| AGATTGAGATCCAGTGGAGA+TGG | 0.632101 | 3_3:-54844111 | None:intergenic |
| GGTAGGACTGGACTCAGAGA+AGG | 0.637373 | 3_3:+54846686 | Msa0458770:CDS |
| AGCAAGACTTGTGACATACA+GGG | 0.652472 | 3_3:-54845827 | None:intergenic |
| ACTACCACAGATTACCTGCA+TGG | 0.656968 | 3_3:-54846528 | None:intergenic |
| GCTAAATCAAAGAGAAACAC+GGG | 0.660284 | 3_3:+54847635 | Msa0458770:three_prime_UTR |
| CAGTCCTACCACACTAACCA+TGG | 0.663013 | 3_3:-54846673 | None:intergenic |
| TGTATGCATTAATGGGCCGA+AGG | 0.664486 | 3_3:+54844473 | Msa0458770:CDS |
| GGTGCTGATATTGAAAACAT+CGG | 0.665514 | 3_3:+54847520 | Msa0458770:CDS |
| AGCTAAATCAAAGAGAAACA+CGG | 0.666440 | 3_3:+54847634 | Msa0458770:three_prime_UTR |
| CTGAAATTGGTGAAACTAAG+GGG | 0.669315 | 3_3:+54846500 | Msa0458770:CDS |
| AGGCATAAAAGGAATAGAAG+TGG | 0.682105 | 3_3:+54846910 | Msa0458770:CDS |
| ATTGTCAAAAGAATGGACAA+AGG | 0.682335 | 3_3:+54847499 | Msa0458770:CDS |
| ACTGAAATTGGTGAAACTAA+GGG | 0.694892 | 3_3:+54846499 | Msa0458770:CDS |
| GCGGAAAATATACCTGACCA+GGG | 0.695587 | 3_3:-54844187 | None:intergenic |
| TGAAGACTCTTCTATCCAAG+GGG | 0.710603 | 3_3:+54847335 | Msa0458770:CDS |
| ATGTGGCAGAGCATTTACGT+TGG | 0.714429 | 3_3:-54847164 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTCATCTAAAATTTAT+TGG | - | chr3_3:54847851-54847870 | None:intergenic | 10.0% |
| !!! | GTTTAAATTACAACTATTTT+TGG | + | chr3_3:54844389-54844408 | Msa0458770:intron | 15.0% |
| !!! | TTGTTTTGTATTATGTATTT+AGG | + | chr3_3:54844436-54844455 | Msa0458770:intron | 15.0% |
| !! | ATAAAAAAAACTTCTACTAT+TGG | + | chr3_3:54844993-54845012 | Msa0458770:intron | 15.0% |
| !! | TTTATAAACAACAAATTTCA+TGG | - | chr3_3:54845755-54845774 | None:intergenic | 15.0% |
| !!! | ATGAAATTTGTTGTTTATAA+AGG | + | chr3_3:54845754-54845773 | Msa0458770:intron | 15.0% |
| !! | AAGAGAAAAATATGTAATTA+TGG | + | chr3_3:54846105-54846124 | Msa0458770:intron | 15.0% |
| !! | TTAAAAAAAAAACAACTCAA+AGG | - | chr3_3:54846405-54846424 | None:intergenic | 15.0% |
| !!! | AAATTGACTGTATTATATTT+TGG | + | chr3_3:54846864-54846883 | Msa0458770:intron | 15.0% |
| !!! | ATTTTAGATGAAATAATTGT+TGG | + | chr3_3:54847855-54847874 | Msa0458770:three_prime_UTR | 15.0% |
| !!! | CAATGAATTTTGATTGAAAT+TGG | + | chr3_3:54844227-54844246 | Msa0458770:intron | 20.0% |
| !! | TTTAGTATAAATGACAATCA+AGG | + | chr3_3:54844538-54844557 | Msa0458770:intron | 20.0% |
| !! | AAGTACAAAAATAATGACAT+TGG | - | chr3_3:54844766-54844785 | None:intergenic | 20.0% |
| !! | ATCTCAAACATTAATAAACT+GGG | - | chr3_3:54844791-54844810 | None:intergenic | 20.0% |
| !!! | TTTTTTGGACAAAAAATACA+TGG | - | chr3_3:54846000-54846019 | None:intergenic | 20.0% |
| !!! | AACATGGTAATCAAATTTTT+TGG | - | chr3_3:54846015-54846034 | None:intergenic | 20.0% |
| !! | ACAAATCGAATTAAATACAT+GGG | - | chr3_3:54846464-54846483 | None:intergenic | 20.0% |
| !! | TACAAATCGAATTAAATACA+TGG | - | chr3_3:54846465-54846484 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTAACTTCAAAAC+TGG | - | chr3_3:54847708-54847727 | None:intergenic | 20.0% |
| ! | CATTCAAATGTTGGATTTAT+GGG | - | chr3_3:54843928-54843947 | None:intergenic | 25.0% |
| !!! | ATTTTGATTGAAATTGGAAC+TGG | + | chr3_3:54844233-54844252 | Msa0458770:intron | 25.0% |
| !!! | TTTTGATTGAAATTGGAACT+GGG | + | chr3_3:54844234-54844253 | Msa0458770:intron | 25.0% |
| !!! | ATTCGATTTGATTTGATTGT+AGG | + | chr3_3:54844261-54844280 | Msa0458770:intron | 25.0% |
| !!! | TTCGATTTGATTTGATTGTA+GGG | + | chr3_3:54844262-54844281 | Msa0458770:intron | 25.0% |
| ! | TTCTTGATGTATGCATTAAT+GGG | + | chr3_3:54844466-54844485 | Msa0458770:CDS | 25.0% |
| !!! | TCAAGGTTGTTATTTTATTG+AGG | + | chr3_3:54844555-54844574 | Msa0458770:intron | 25.0% |
| ! | TTCTTTATGATATGACGAAA+CGG | + | chr3_3:54844630-54844649 | Msa0458770:intron | 25.0% |
| ! | ACAAAAATAATGACATTGGA+TGG | - | chr3_3:54844762-54844781 | None:intergenic | 25.0% |
| ! | TCTCAAACATTAATAAACTG+GGG | - | chr3_3:54844790-54844809 | None:intergenic | 25.0% |
| ! | CATCTCAAACATTAATAAAC+TGG | - | chr3_3:54844792-54844811 | None:intergenic | 25.0% |
| ! | CAGTTTATTAATGTTTGAGA+TGG | + | chr3_3:54844790-54844809 | Msa0458770:intron | 25.0% |
| ! | TTTAATGTAACAGAAGTCTA+AGG | - | chr3_3:54845107-54845126 | None:intergenic | 25.0% |
| !!! | AATATGAGTTGGTTTGTAAT+CGG | + | chr3_3:54845268-54845287 | Msa0458770:intron | 25.0% |
| ! | TTGTTATAATAGTTCCAGTT+GGG | - | chr3_3:54845415-54845434 | None:intergenic | 25.0% |
| ! | GTTAACATTATCAACGAAAT+AGG | + | chr3_3:54845554-54845573 | Msa0458770:intron | 25.0% |
| !!! | CTTTAAAATCATGATTACAG+AGG | - | chr3_3:54845645-54845664 | None:intergenic | 25.0% |
| !! | CTCTGTAATCATGATTTTAA+AGG | + | chr3_3:54845643-54845662 | Msa0458770:intron | 25.0% |
| ! | GGAATAAAAAGAGAATAAAG+AGG | + | chr3_3:54845664-54845683 | Msa0458770:intron | 25.0% |
| ! | AAATTACATATATGCCTCTA+TGG | - | chr3_3:54845780-54845799 | None:intergenic | 25.0% |
| ! | GTTGGGAAAAATATGAAAAA+CGG | - | chr3_3:54846066-54846085 | None:intergenic | 25.0% |
| ! | CAAATATTTCTTGAAACGTT+GGG | - | chr3_3:54846083-54846102 | None:intergenic | 25.0% |
| ! | TCAAATATTTCTTGAAACGT+TGG | - | chr3_3:54846084-54846103 | None:intergenic | 25.0% |
| ! | AAACTTTAAATGACTCATAC+TGG | - | chr3_3:54846207-54846226 | None:intergenic | 25.0% |
| ! | AGTCATTACAATCTAGTAAA+TGG | + | chr3_3:54846245-54846264 | Msa0458770:intron | 25.0% |
| ! | TGTAAATCAAGACAAAAAAG+TGG | - | chr3_3:54846432-54846451 | None:intergenic | 25.0% |
| !!! | TGACTGTATTATATTTTGGT+AGG | + | chr3_3:54846868-54846887 | Msa0458770:intron | 25.0% |
| !!! | GACTGTATTATATTTTGGTA+GGG | + | chr3_3:54846869-54846888 | Msa0458770:intron | 25.0% |
| ! | AATATCTTCTTTATTGTGTC+AGG | - | chr3_3:54847196-54847215 | None:intergenic | 25.0% |
| ! | TGACACAATAAAGAAGATAT+TGG | + | chr3_3:54847195-54847214 | Msa0458770:CDS | 25.0% |
| ! | AAAATTAGCAGAAAAACTAG+AGG | - | chr3_3:54847446-54847465 | None:intergenic | 25.0% |
| !!! | TTATTTTATCTGTACTCTTC+AGG | + | chr3_3:54847465-54847484 | Msa0458770:intron | 25.0% |
| !! | TGCAATATTGTAGTTTGTAT+TGG | - | chr3_3:54847586-54847605 | None:intergenic | 25.0% |
| ! | AAAAAACTTAATCCACCAAT+AGG | + | chr3_3:54847720-54847739 | Msa0458770:three_prime_UTR | 25.0% |
| ! | TTATTCAAAATGGAACCTAT+TGG | - | chr3_3:54847738-54847757 | None:intergenic | 25.0% |
| ! | GTGATCTAACTTATTCAAAA+TGG | - | chr3_3:54847748-54847767 | None:intergenic | 25.0% |
| !! | TGTTGGTTGAAAATTTGAAA+TGG | + | chr3_3:54847872-54847891 | Msa0458770:three_prime_UTR | 25.0% |
| !! | GTTTTCAAGACAAAAACACT+TGG | + | chr3_3:54843876-54843895 | Msa0458770:five_prime_UTR | 30.0% |
| GCATTCAAATGTTGGATTTA+TGG | - | chr3_3:54843929-54843948 | None:intergenic | 30.0% | |
| GAAATGTTGCATTCAAATGT+TGG | - | chr3_3:54843937-54843956 | None:intergenic | 30.0% | |
| TAGAGATGGAAAAAGAAGAA+GGG | - | chr3_3:54843986-54844005 | None:intergenic | 30.0% | |
| ! | TTCGATTTGAGAAGAAGATA+GGG | - | chr3_3:54844043-54844062 | None:intergenic | 30.0% |
| ! | AAGAAAGCCAATGAGATTTT+GGG | + | chr3_3:54844346-54844365 | Msa0458770:CDS | 30.0% |
| TAAATACCCCAAAATCTCAT+TGG | - | chr3_3:54844356-54844375 | None:intergenic | 30.0% | |
| CTTCTTGATGTATGCATTAA+TGG | + | chr3_3:54844465-54844484 | Msa0458770:CDS | 30.0% | |
| !!! | AGGTTGTTATTTTATTGAGG+TGG | + | chr3_3:54844558-54844577 | Msa0458770:intron | 30.0% |
| !!! | TGTTATTTTATTGAGGTGGA+AGG | + | chr3_3:54844562-54844581 | Msa0458770:intron | 30.0% |
| !! | GTTATTTTATTGAGGTGGAA+GGG | + | chr3_3:54844563-54844582 | Msa0458770:intron | 30.0% |
| ! | TTAGTGTTATCGATTGTGAA+TGG | + | chr3_3:54844684-54844703 | Msa0458770:intron | 30.0% |
| TCCATTTACAAACAACAGAA+AGG | + | chr3_3:54844851-54844870 | Msa0458770:intron | 30.0% | |
| ! | TCCTTTCTGTTGTTTGTAAA+TGG | - | chr3_3:54844855-54844874 | None:intergenic | 30.0% |
| ATCATCTATACTTGATCAAC+AGG | - | chr3_3:54845215-54845234 | None:intergenic | 30.0% | |
| CAACTCATATTACACTGTTA+TGG | - | chr3_3:54845259-54845278 | None:intergenic | 30.0% | |
| CATAACAGTGTAATATGAGT+TGG | + | chr3_3:54845257-54845276 | Msa0458770:intron | 30.0% | |
| ACAATTAGAAGTTGAATCAC+TGG | + | chr3_3:54845318-54845337 | Msa0458770:intron | 30.0% | |
| GTTGTTATAATAGTTCCAGT+TGG | - | chr3_3:54845416-54845435 | None:intergenic | 30.0% | |
| ! | CCAAGCCTTTTAATATTAGA+CGG | + | chr3_3:54845441-54845460 | Msa0458770:intron | 30.0% |
| ! | CAAGCCTTTTAATATTAGAC+GGG | + | chr3_3:54845442-54845461 | Msa0458770:intron | 30.0% |
| ! | AAGCCTTTTAATATTAGACG+GGG | + | chr3_3:54845443-54845462 | Msa0458770:intron | 30.0% |
| AGATAAATGCTCTCTTATCA+GGG | - | chr3_3:54845500-54845519 | None:intergenic | 30.0% | |
| TAAAATCATGATTACAGAGG+AGG | - | chr3_3:54845642-54845661 | None:intergenic | 30.0% | |
| ATATGTAATTATGGCGTATG+TGG | + | chr3_3:54846114-54846133 | Msa0458770:intron | 30.0% | |
| AATTCTACTGTCATGGTAAA+AGG | - | chr3_3:54846140-54846159 | None:intergenic | 30.0% | |
| TTTACCATGACAGTAGAATT+AGG | + | chr3_3:54846140-54846159 | Msa0458770:intron | 30.0% | |
| ! | TTTTCCTAATTCTACTGTCA+TGG | - | chr3_3:54846147-54846166 | None:intergenic | 30.0% |
| ATACCATCTATGAGAAGTTT+AGG | + | chr3_3:54846284-54846303 | Msa0458770:intron | 30.0% | |
| ACTGAAATTGGTGAAACTAA+GGG | + | chr3_3:54846499-54846518 | Msa0458770:CDS | 30.0% | |
| ! | TAGAAACAGAATTTTGCCTA+AGG | - | chr3_3:54846820-54846839 | None:intergenic | 30.0% |
| CATTATTACTTTGCAAAAGG+TGG | - | chr3_3:54847009-54847028 | None:intergenic | 30.0% | |
| AGGCATTATTACTTTGCAAA+AGG | - | chr3_3:54847012-54847031 | None:intergenic | 30.0% | |
| AATTGCACTTCTAATGCAAT+TGG | + | chr3_3:54847278-54847297 | Msa0458770:intron | 30.0% | |
| ATTGTCAAAAGAATGGACAA+AGG | + | chr3_3:54847499-54847518 | Msa0458770:CDS | 30.0% | |
| AGCTAAATCAAAGAGAAACA+CGG | + | chr3_3:54847634-54847653 | Msa0458770:three_prime_UTR | 30.0% | |
| ! | TGGAAAAAGAAGAAGGGTTT+TGG | - | chr3_3:54843980-54843999 | None:intergenic | 35.0% |
| GTAGAGATGGAAAAAGAAGA+AGG | - | chr3_3:54843987-54844006 | None:intergenic | 35.0% | |
| AGAAGAAGACATTGTAGAGA+TGG | - | chr3_3:54844000-54844019 | None:intergenic | 35.0% | |
| ! | TCGATTTGAGAAGAAGATAG+GGG | - | chr3_3:54844042-54844061 | None:intergenic | 35.0% |
| ! | GTTCGATTTGAGAAGAAGAT+AGG | - | chr3_3:54844044-54844063 | None:intergenic | 35.0% |
| !!! | ATTGTGGGTTTTAAGAGTGT+GGG | - | chr3_3:54844066-54844085 | None:intergenic | 35.0% |
| !!! | AATTGTGGGTTTTAAGAGTG+TGG | - | chr3_3:54844067-54844086 | None:intergenic | 35.0% |
| CCTAGATTTAGGGAAATTGT+GGG | - | chr3_3:54844081-54844100 | None:intergenic | 35.0% | |
| CCACAATTTCCCTAAATCTA+GGG | + | chr3_3:54844079-54844098 | Msa0458770:CDS | 35.0% | |
| !! | TTTCCCTAAATCTAGGGTTT+TGG | + | chr3_3:54844085-54844104 | Msa0458770:CDS | 35.0% |
| TGTTTATTCGCAATGCAATG+CGG | - | chr3_3:54844209-54844228 | None:intergenic | 35.0% | |
| ! | CAAGAAAGCCAATGAGATTT+TGG | + | chr3_3:54844345-54844364 | Msa0458770:CDS | 35.0% |
| ! | AGAAAGCCAATGAGATTTTG+GGG | + | chr3_3:54844347-54844366 | Msa0458770:CDS | 35.0% |
| ! | GTTGAATTCAGCTTTTCCTT+CGG | - | chr3_3:54844492-54844511 | None:intergenic | 35.0% |
| GAATTCAACAGTTATCAGTC+AGG | + | chr3_3:54844503-54844522 | Msa0458770:CDS | 35.0% | |
| AGAAAGCAAAGAATCTGCAA+TGG | + | chr3_3:54844708-54844727 | Msa0458770:intron | 35.0% | |
| TAATGACATTGGATGGAATG+TGG | - | chr3_3:54844755-54844774 | None:intergenic | 35.0% | |
| CTGCATGATGAAAAAATCAG+TGG | - | chr3_3:54844830-54844849 | None:intergenic | 35.0% | |
| ATAACATATCCTCAGTGTGT+TGG | + | chr3_3:54844904-54844923 | Msa0458770:intron | 35.0% | |
| ACTCTCAAGTCTCAAATTTC+TGG | - | chr3_3:54845180-54845199 | None:intergenic | 35.0% | |
| GCTATTATATTTCACCCAAC+TGG | + | chr3_3:54845398-54845417 | Msa0458770:intron | 35.0% | |
| CCGTCTAATATTAAAAGGCT+TGG | - | chr3_3:54845444-54845463 | None:intergenic | 35.0% | |
| GAGATAAATGCTCTCTTATC+AGG | - | chr3_3:54845501-54845520 | None:intergenic | 35.0% | |
| GTTGTTTATAAAGGCCATAG+AGG | + | chr3_3:54845763-54845782 | Msa0458770:intron | 35.0% | |
| GATTCTGTTGATGTTTCATG+TGG | + | chr3_3:54845895-54845914 | Msa0458770:CDS | 35.0% | |
| GAGAAGCAGTAGAAAAAACA+TGG | - | chr3_3:54846031-54846050 | None:intergenic | 35.0% | |
| GGGAAAAATATGAAAAACGG+AGG | - | chr3_3:54846063-54846082 | None:intergenic | 35.0% | |
| GTAGAATTAGGAAAACCAAG+TGG | + | chr3_3:54846152-54846171 | Msa0458770:intron | 35.0% | |
| TATGTTAAGTGACCCAACTA+CGG | + | chr3_3:54846176-54846195 | Msa0458770:intron | 35.0% | |
| TTTATGTGCAAAACCACACA+GGG | - | chr3_3:54846365-54846384 | None:intergenic | 35.0% | |
| ATTTATGTGCAAAACCACAC+AGG | - | chr3_3:54846366-54846385 | None:intergenic | 35.0% | |
| !! | GTGTGGTTTTGCACATAAAT+TGG | + | chr3_3:54846366-54846385 | Msa0458770:intron | 35.0% |
| !! | CGATTTGTAAGCTTTGAAGA+TGG | + | chr3_3:54846476-54846495 | Msa0458770:intron | 35.0% |
| !! | CTTTGAAGATGGACTGAAAT+TGG | + | chr3_3:54846487-54846506 | Msa0458770:CDS | 35.0% |
| GACTGAAATTGGTGAAACTA+AGG | + | chr3_3:54846498-54846517 | Msa0458770:CDS | 35.0% | |
| CTGAAATTGGTGAAACTAAG+GGG | + | chr3_3:54846500-54846519 | Msa0458770:CDS | 35.0% | |
| GTAACCATTGTTCTTTATCC+AGG | + | chr3_3:54846626-54846645 | Msa0458770:intron | 35.0% | |
| !!! | ATCTGGCTTTTAACAACCTT+AGG | + | chr3_3:54846801-54846820 | Msa0458770:intron | 35.0% |
| AGGCATAAAAGGAATAGAAG+TGG | + | chr3_3:54846910-54846929 | Msa0458770:CDS | 35.0% | |
| CATAAAAGGAATAGAAGTGG+TGG | + | chr3_3:54846913-54846932 | Msa0458770:CDS | 35.0% | |
| ! | GTAATAATGCCTTTTCCTCA+TGG | + | chr3_3:54847020-54847039 | Msa0458770:intron | 35.0% |
| !!! | CGCTTTCCATACTAGTTTTA+TGG | + | chr3_3:54847069-54847088 | Msa0458770:CDS | 35.0% |
| CAGGTTCCATAAAACTAGTA+TGG | - | chr3_3:54847078-54847097 | None:intergenic | 35.0% | |
| TGGAAATGACTGGTATTCTT+GGG | - | chr3_3:54847147-54847166 | None:intergenic | 35.0% | |
| TTGGAAATGACTGGTATTCT+TGG | - | chr3_3:54847148-54847167 | None:intergenic | 35.0% | |
| AAAGAAGATATTGGCACAAC+AGG | + | chr3_3:54847204-54847223 | Msa0458770:CDS | 35.0% | |
| CTGAAGAAAAGCTATGAACT+GGG | + | chr3_3:54847358-54847377 | Msa0458770:CDS | 35.0% | |
| TTCAAGAACACGGATAGTAT+AGG | - | chr3_3:54847411-54847430 | None:intergenic | 35.0% | |
| TCCATTGAGATTCAAGAACA+CGG | - | chr3_3:54847421-54847440 | None:intergenic | 35.0% | |
| TGCTGGAATTGTCAAAAGAA+TGG | + | chr3_3:54847492-54847511 | Msa0458770:CDS | 35.0% | |
| !! | GGTGCTGATATTGAAAACAT+CGG | + | chr3_3:54847520-54847539 | Msa0458770:CDS | 35.0% |
| ! | CACACATTTTCTCGTGAAAA+AGG | - | chr3_3:54847612-54847631 | None:intergenic | 35.0% |
| GCTAAATCAAAGAGAAACAC+GGG | + | chr3_3:54847635-54847654 | Msa0458770:three_prime_UTR | 35.0% | |
| TTCAAAATGGAACCTATTGG+TGG | - | chr3_3:54847735-54847754 | None:intergenic | 35.0% | |
| !!! | TTTTGTTACAGTGATGACGG+AGG | - | chr3_3:54843905-54843924 | None:intergenic | 40.0% |
| !!! | GGGTTTTGTTACAGTGATGA+CGG | - | chr3_3:54843908-54843927 | None:intergenic | 40.0% |
| AAGAAGATAGGGGAAAAGGA+GGG | - | chr3_3:54844032-54844051 | None:intergenic | 40.0% | |
| TGAGAAGAAGATAGGGGAAA+AGG | - | chr3_3:54844036-54844055 | None:intergenic | 40.0% | |
| CCCACAATTTCCCTAAATCT+AGG | + | chr3_3:54844078-54844097 | Msa0458770:CDS | 40.0% | |
| CCCTAGATTTAGGGAAATTG+TGG | - | chr3_3:54844082-54844101 | None:intergenic | 40.0% | |
| TGGCCAAAACCCTAGATTTA+GGG | - | chr3_3:54844091-54844110 | None:intergenic | 40.0% | |
| AATGGAAGATTGAGATCCAG+TGG | - | chr3_3:54844120-54844139 | None:intergenic | 40.0% | |
| AGCTACAGAAGCTTCATGAA+TGG | - | chr3_3:54844138-54844157 | None:intergenic | 40.0% | |
| TTGTACAAAACTGCAGCAGA+AGG | - | chr3_3:54844328-54844347 | None:intergenic | 40.0% | |
| ! | ATTTTATTGAGGTGGAAGGG+TGG | + | chr3_3:54844566-54844585 | Msa0458770:intron | 40.0% |
| AAGGGTGGAGTGAAATTTAG+TGG | + | chr3_3:54844581-54844600 | Msa0458770:intron | 40.0% | |
| ATCATTCATCCAACACACTG+AGG | - | chr3_3:54844916-54844935 | None:intergenic | 40.0% | |
| GAATCACTGGAAATCACTTC+TGG | + | chr3_3:54845331-54845350 | Msa0458770:intron | 40.0% | |
| CAGCCCCGTCTAATATTAAA+AGG | - | chr3_3:54845449-54845468 | None:intergenic | 40.0% | |
| ! | CTTTTAATATTAGACGGGGC+TGG | + | chr3_3:54845447-54845466 | Msa0458770:intron | 40.0% |
| ATGATTACAGAGGAGGTCTA+AGG | - | chr3_3:54845635-54845654 | None:intergenic | 40.0% | |
| AGCAAGACTTGTGACATACA+GGG | - | chr3_3:54845830-54845849 | None:intergenic | 40.0% | |
| GTTTCATGTGGTTTGAGCTT+AGG | + | chr3_3:54845907-54845926 | Msa0458770:CDS | 40.0% | |
| TGAAAAACGGAGGCAATGAA+AGG | - | chr3_3:54846053-54846072 | None:intergenic | 40.0% | |
| GGTCACTTAACATATCCACT+TGG | - | chr3_3:54846170-54846189 | None:intergenic | 40.0% | |
| ATGTTAAGTGACCCAACTAC+GGG | + | chr3_3:54846177-54846196 | Msa0458770:intron | 40.0% | |
| AGGCCTAAACTTCTCATAGA+TGG | - | chr3_3:54846290-54846309 | None:intergenic | 40.0% | |
| CTGACAAGCTGAAAACAAAC+AGG | - | chr3_3:54846310-54846329 | None:intergenic | 40.0% | |
| GCATCCTGGATAAAGAACAA+TGG | - | chr3_3:54846633-54846652 | None:intergenic | 40.0% | |
| CCTTACTGGACATAGGTAAT+TGG | - | chr3_3:54846772-54846791 | None:intergenic | 40.0% | |
| CCAATTACCTATGTCCAGTA+AGG | + | chr3_3:54846769-54846788 | Msa0458770:intron | 40.0% | |
| TCAAGAACCTTACTGGACAT+AGG | - | chr3_3:54846779-54846798 | None:intergenic | 40.0% | |
| TATGTCCAGTAAGGTTCTTG+AGG | + | chr3_3:54846778-54846797 | Msa0458770:intron | 40.0% | |
| GGAAATGACTGGTATTCTTG+GGG | - | chr3_3:54847146-54847165 | None:intergenic | 40.0% | |
| GCATTTACGTTGGAAATGAC+TGG | - | chr3_3:54847157-54847176 | None:intergenic | 40.0% | |
| ATTGTGTCAGGATCTGTATG+TGG | - | chr3_3:54847184-54847203 | None:intergenic | 40.0% | |
| TCCAACGCAAAAGACATAAG+TGG | + | chr3_3:54847250-54847269 | Msa0458770:intron | 40.0% | |
| ! | ACCACTTATGTCTTTTGCGT+TGG | - | chr3_3:54847254-54847273 | None:intergenic | 40.0% |
| AGGTTACTTACCCTGTTCAA+TGG | + | chr3_3:54847302-54847321 | Msa0458770:intron | 40.0% | |
| GGTTACTTACCCTGTTCAAT+GGG | + | chr3_3:54847303-54847322 | Msa0458770:intron | 40.0% | |
| !! | CTGTTGTTTCCCATTGAACA+GGG | - | chr3_3:54847315-54847334 | None:intergenic | 40.0% |
| !! | ACTGTTGTTTCCCATTGAAC+AGG | - | chr3_3:54847316-54847335 | None:intergenic | 40.0% |
| AGTGAAGACTCTTCTATCCA+AGG | + | chr3_3:54847333-54847352 | Msa0458770:CDS | 40.0% | |
| GTGAAGACTCTTCTATCCAA+GGG | + | chr3_3:54847334-54847353 | Msa0458770:CDS | 40.0% | |
| TGAAGACTCTTCTATCCAAG+GGG | + | chr3_3:54847335-54847354 | Msa0458770:CDS | 40.0% | |
| GCTGAAGAAAAGCTATGAAC+TGG | + | chr3_3:54847357-54847376 | Msa0458770:CDS | 40.0% | |
| CGTAAACTTTCTACCTTTCC+AGG | - | chr3_3:54847385-54847404 | None:intergenic | 40.0% | |
| TCCGTGTTCTTGAATCTCAA+TGG | + | chr3_3:54847417-54847436 | Msa0458770:intron | 40.0% | |
| ! | TGTACTCTTCAGGTTATTGC+TGG | + | chr3_3:54847475-54847494 | Msa0458770:intron | 40.0% |
| !!! | GGTTTTGGAGAATGCGAGAA+TGG | - | chr3_3:54843965-54843984 | None:intergenic | 45.0% |
| GAAGAAGATAGGGGAAAAGG+AGG | - | chr3_3:54844033-54844052 | None:intergenic | 45.0% | |
| GTGGCCAAAACCCTAGATTT+AGG | - | chr3_3:54844092-54844111 | None:intergenic | 45.0% | |
| AGATTGAGATCCAGTGGAGA+TGG | - | chr3_3:54844114-54844133 | None:intergenic | 45.0% | |
| GCGGAAAATATACCTGACCA+GGG | - | chr3_3:54844190-54844209 | None:intergenic | 45.0% | |
| TGCGGAAAATATACCTGACC+AGG | - | chr3_3:54844191-54844210 | None:intergenic | 45.0% | |
| ! | TGTATGCATTAATGGGCCGA+AGG | + | chr3_3:54844473-54844492 | Msa0458770:CDS | 45.0% |
| TGACGAAACGGCATGAAGTT+AGG | + | chr3_3:54844642-54844661 | Msa0458770:intron | 45.0% | |
| ATTGGATGGAATGTGGTGCA+GGG | - | chr3_3:54844748-54844767 | None:intergenic | 45.0% | |
| TCACTGGAAATCACTTCTGG+TGG | + | chr3_3:54845334-54845353 | Msa0458770:intron | 45.0% | |
| GTTCTCAAGTGCAGACAATG+CGG | - | chr3_3:54845592-54845611 | None:intergenic | 45.0% | |
| GGCTGAAGCAGAGAATTAGA+TGG | - | chr3_3:54845805-54845824 | None:intergenic | 45.0% | |
| CAGCAAGACTTGTGACATAC+AGG | - | chr3_3:54845831-54845850 | None:intergenic | 45.0% | |
| TTGCTGCTGTTGAGCTACTT+CGG | + | chr3_3:54845845-54845864 | Msa0458770:CDS | 45.0% | |
| ! | CTTAGGAGAGTATACTGCTC+TGG | + | chr3_3:54845924-54845943 | Msa0458770:CDS | 45.0% |
| TGTTAAGTGACCCAACTACG+GGG | + | chr3_3:54846178-54846197 | Msa0458770:intron | 45.0% | |
| ATACTGGAAACCCCGTAGTT+GGG | - | chr3_3:54846191-54846210 | None:intergenic | 45.0% | |
| GCTTGTCAGCTTGTAGCATA+CGG | + | chr3_3:54846321-54846340 | Msa0458770:intron | 45.0% | |
| !! | GAAGAAGTATCTTCCCTGTG+TGG | + | chr3_3:54846349-54846368 | Msa0458770:intron | 45.0% |
| ACTACCACAGATTACCTGCA+TGG | - | chr3_3:54846531-54846550 | None:intergenic | 45.0% | |
| GATGCTGCTGATGCTACTAA+AGG | + | chr3_3:54846648-54846667 | Msa0458770:CDS | 45.0% | |
| ATCTGAACCTTCTCTGCTTC+AGG | - | chr3_3:54846747-54846766 | None:intergenic | 45.0% | |
| CAGATCCTCAAGAACCTTAC+TGG | - | chr3_3:54846786-54846805 | None:intergenic | 45.0% | |
| CAGTAAGGTTCTTGAGGATC+TGG | + | chr3_3:54846784-54846803 | Msa0458770:intron | 45.0% | |
| TAGGGAAACTATGCTGTCTC+TGG | + | chr3_3:54846887-54846906 | Msa0458770:intron | 45.0% | |
| AGCCAAAGCGAAGTCTTTCA+AGG | + | chr3_3:54846937-54846956 | Msa0458770:CDS | 45.0% | |
| AGCCTTGAAAGACTTCGCTT+TGG | - | chr3_3:54846942-54846961 | None:intergenic | 45.0% | |
| GAAGTCTTTCAAGGCTCGAA+TGG | + | chr3_3:54846946-54846965 | Msa0458770:CDS | 45.0% | |
| ! | TCTTGGGGTTCTAATGTCTG+TGG | - | chr3_3:54847131-54847150 | None:intergenic | 45.0% |
| ! | ATGTGGCAGAGCATTTACGT+TGG | - | chr3_3:54847167-54847186 | None:intergenic | 45.0% |
| TATTGGCACAACAGGTATGC+AGG | + | chr3_3:54847212-54847231 | Msa0458770:intron | 45.0% | |
| GCACTTCTAATGCAATTGGC+AGG | + | chr3_3:54847282-54847301 | Msa0458770:intron | 45.0% | |
| ! | ATAGCTTTTCTTCAGCCCCT+TGG | - | chr3_3:54847353-54847372 | None:intergenic | 45.0% |
| AAAAGCTATGAACTGGGACC+TGG | + | chr3_3:54847364-54847383 | Msa0458770:CDS | 45.0% | |
| TCGGAGCTTAAGAAGTTTGC+AGG | + | chr3_3:54847539-54847558 | Msa0458770:exon | 45.0% | |
| TTGAGATCCAGTGGAGATGG+TGG | - | chr3_3:54844111-54844130 | None:intergenic | 50.0% | |
| TCCAATGCGTTTCTCTTCCC+TGG | + | chr3_3:54844170-54844189 | Msa0458770:CDS | 50.0% | |
| ACCAGGGAAGAGAAACGCAT+TGG | - | chr3_3:54844174-54844193 | None:intergenic | 50.0% | |
| TTGTAGGGTGCACAAGCTGT+TGG | + | chr3_3:54844277-54844296 | Msa0458770:intron | 50.0% | |
| GGTGCACAAGCTGTTGGAAT+GGG | + | chr3_3:54844283-54844302 | Msa0458770:CDS | 50.0% | |
| CGAAACGGCATGAAGTTAGG+TGG | + | chr3_3:54844645-54844664 | Msa0458770:intron | 50.0% | |
| CATTGGATGGAATGTGGTGC+AGG | - | chr3_3:54844749-54844768 | None:intergenic | 50.0% | |
| ! | TACAGAGGAGGTCTAAGGTC+TGG | - | chr3_3:54845630-54845649 | None:intergenic | 50.0% |
| AGACTTGTGACATACAGGGC+AGG | - | chr3_3:54845826-54845845 | None:intergenic | 50.0% | |
| TGCTGCTGTTGAGCTACTTC+GGG | + | chr3_3:54845846-54845865 | Msa0458770:CDS | 50.0% | |
| TATACTGCTCTGGCGTTTGC+TGG | + | chr3_3:54845934-54845953 | Msa0458770:CDS | 50.0% | |
| ATACTGCTCTGGCGTTTGCT+GGG | + | chr3_3:54845935-54845954 | Msa0458770:CDS | 50.0% | |
| CATACTGGAAACCCCGTAGT+TGG | - | chr3_3:54846192-54846211 | None:intergenic | 50.0% | |
| GAAGCCATGCAGGTAATCTG+TGG | + | chr3_3:54846524-54846543 | Msa0458770:intron | 50.0% | |
| TAGTAGCATCAGCAGCATCC+TGG | - | chr3_3:54846647-54846666 | None:intergenic | 50.0% | |
| !! | TGATGCTACTAAAGGCGCCA+TGG | + | chr3_3:54846656-54846675 | Msa0458770:CDS | 50.0% |
| !! | TAAAGGCGCCATGGTTAGTG+TGG | + | chr3_3:54846665-54846684 | Msa0458770:CDS | 50.0% |
| CAGTCCTACCACACTAACCA+TGG | - | chr3_3:54846676-54846695 | None:intergenic | 50.0% | |
| CATGGTTAGTGTGGTAGGAC+TGG | + | chr3_3:54846674-54846693 | Msa0458770:CDS | 50.0% | |
| GTTGTGTGATGCAGCCAATC+TGG | + | chr3_3:54846716-54846735 | Msa0458770:CDS | 50.0% | |
| TGCTTCAGGCACTTCCAGAT+TGG | - | chr3_3:54846733-54846752 | None:intergenic | 50.0% | |
| GGAAACTATGCTGTCTCTGG+AGG | + | chr3_3:54846890-54846909 | Msa0458770:CDS | 50.0% | |
| ! | GCTGTCTCTGGAGGCATAAA+AGG | + | chr3_3:54846899-54846918 | Msa0458770:CDS | 50.0% |
| ! | TGCCTTTTCCTCATGGTGAC+AGG | + | chr3_3:54847027-54847046 | Msa0458770:intron | 50.0% |
| CACCTGTCACCATGAGGAAA+AGG | - | chr3_3:54847032-54847051 | None:intergenic | 50.0% | |
| GGAACCTGCAGTGTCAAGAT+TGG | + | chr3_3:54847090-54847109 | Msa0458770:CDS | 50.0% | |
| GCTTCCAATCTTGACACTGC+AGG | - | chr3_3:54847097-54847116 | None:intergenic | 50.0% | |
| CTATGAACTGGGACCTGGAA+AGG | + | chr3_3:54847369-54847388 | Msa0458770:CDS | 50.0% | |
| GCAGGACATTGCTATGTGTG+TGG | + | chr3_3:54847557-54847576 | Msa0458770:three_prime_UTR | 50.0% | |
| !! | GTTTTGGCCACCATCTCCAC+TGG | + | chr3_3:54844101-54844120 | Msa0458770:CDS | 55.0% |
| TGCGTTTCTCTTCCCTGGTC+AGG | + | chr3_3:54844175-54844194 | Msa0458770:CDS | 55.0% | |
| GGGTGCACAAGCTGTTGGAA+TGG | + | chr3_3:54844282-54844301 | Msa0458770:intron | 55.0% | |
| !! | ATTAGACGGGGCTGGCTACA+TGG | + | chr3_3:54845455-54845474 | Msa0458770:intron | 55.0% |
| AAGGTCTGGTGAGGAGGGAA+TGG | - | chr3_3:54845616-54845635 | None:intergenic | 55.0% | |
| ! | GGTCTAAGGTCTGGTGAGGA+GGG | - | chr3_3:54845621-54845640 | None:intergenic | 55.0% |
| ! | AGGTCTAAGGTCTGGTGAGG+AGG | - | chr3_3:54845622-54845641 | None:intergenic | 55.0% |
| ! | AGGAGGTCTAAGGTCTGGTG+AGG | - | chr3_3:54845625-54845644 | None:intergenic | 55.0% |
| ! | TACTGCTCTGGCGTTTGCTG+GGG | + | chr3_3:54845936-54845955 | Msa0458770:CDS | 55.0% |
| ACTAAGGGGTGAAGCCATGC+AGG | + | chr3_3:54846514-54846533 | Msa0458770:CDS | 55.0% | |
| GGTAGGACTGGACTCAGAGA+AGG | + | chr3_3:54846686-54846705 | Msa0458770:CDS | 55.0% | |
| TGGCTGCATCACACAACTGC+TGG | - | chr3_3:54846713-54846732 | None:intergenic | 55.0% | |
| !! | GGAAGTGCCTGAAGCAGAGA+AGG | + | chr3_3:54846737-54846756 | Msa0458770:CDS | 55.0% |
| TGAGCTACTTCGGGCACGTG+AGG | + | chr3_3:54845855-54845874 | Msa0458770:CDS | 60.0% | |
| GAGCTACTTCGGGCACGTGA+GGG | + | chr3_3:54845856-54845875 | Msa0458770:CDS | 60.0% | |
| ! | TGGCGTTTGCTGGGGCTTTC+AGG | + | chr3_3:54845944-54845963 | Msa0458770:CDS | 60.0% |
| GGCGCCATGGTTAGTGTGGT+AGG | + | chr3_3:54846669-54846688 | Msa0458770:CDS | 60.0% | |
| CTACTTCGGGCACGTGAGGG+AGG | + | chr3_3:54845859-54845878 | Msa0458770:CDS | 65.0% | |
| CAGGCGCACCTGTCACCATG+AGG | - | chr3_3:54847038-54847057 | None:intergenic | 65.0% | |
| CTCATGGTGACAGGTGCGCC+TGG | + | chr3_3:54847036-54847055 | Msa0458770:intron | 65.0% | |
| !! | GGAAAGCGCCTGCAACAGCC+AGG | - | chr3_3:54847057-54847076 | None:intergenic | 65.0% |
| CAGGTGCGCCTGGCTGTTGC+AGG | + | chr3_3:54847046-54847065 | Msa0458770:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 54843872 | 54847922 | 54843872 | ID=Msa0458770;Name=Msa0458770 |
| chr3_3 | mRNA | 54843872 | 54847922 | 54843872 | ID=Msa0458770-mRNA-1;Parent=Msa0458770;Name=Msa0458770-mRNA-1;_AED=0.12;_eAED=0.12;_QI=73|1|1|1|1|1|10|373|380 |
| chr3_3 | exon | 54843872 | 54844196 | 54843872 | ID=Msa0458770-mRNA-1:exon:10835;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54844283 | 54844368 | 54844283 | ID=Msa0458770-mRNA-1:exon:10836;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54844458 | 54844524 | 54844458 | ID=Msa0458770-mRNA-1:exon:10837;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54845823 | 54845965 | 54845823 | ID=Msa0458770-mRNA-1:exon:10838;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54846487 | 54846535 | 54846487 | ID=Msa0458770-mRNA-1:exon:10839;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54846648 | 54846785 | 54846648 | ID=Msa0458770-mRNA-1:exon:10840;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54846890 | 54846970 | 54846890 | ID=Msa0458770-mRNA-1:exon:10841;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54847049 | 54847225 | 54847049 | ID=Msa0458770-mRNA-1:exon:10842;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54847304 | 54847390 | 54847304 | ID=Msa0458770-mRNA-1:exon:10843;Parent=Msa0458770-mRNA-1 |
| chr3_3 | exon | 54847487 | 54847922 | 54847487 | ID=Msa0458770-mRNA-1:exon:10844;Parent=Msa0458770-mRNA-1 |
| chr3_3 | five_prime_UTR | 54843872 | 54843944 | 54843872 | ID=Msa0458770-mRNA-1:five_prime_utr;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54843945 | 54844196 | 54843945 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54844283 | 54844368 | 54844283 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54844458 | 54844524 | 54844458 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54845823 | 54845965 | 54845823 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54846487 | 54846535 | 54846487 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54846648 | 54846785 | 54846648 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54846890 | 54846970 | 54846890 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54847049 | 54847225 | 54847049 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54847304 | 54847390 | 54847304 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | CDS | 54847487 | 54847549 | 54847487 | ID=Msa0458770-mRNA-1:cds;Parent=Msa0458770-mRNA-1 |
| chr3_3 | three_prime_UTR | 54847550 | 54847922 | 54847550 | ID=Msa0458770-mRNA-1:three_prime_utr;Parent=Msa0458770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
