Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413720 | XP_003599303.2 | 95.263 | 380 | 18 | 0 | 1 | 380 | 1 | 380 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413720 | sp|Q8R3F5|FABD_MOUSE | 39.672 | 305 | 174 | 4 | 77 | 373 | 61 | 363 | 7.12e-69 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413720 | G7J0N6 | 95.263 | 380 | 18 | 0 | 1 | 380 | 1 | 380 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0413720 | 0.805108 | 1.565278e-49 | -8.615850e-47 |
| Msa0016670 | Msa0413720 | 0.823588 | 1.277560e-53 | -8.615850e-47 |
| Msa0032120 | Msa0413720 | 0.850538 | 1.591992e-60 | -8.615850e-47 |
| Msa0032400 | Msa0413720 | 0.835148 | 1.985719e-56 | -8.615850e-47 |
| Msa0053110 | Msa0413720 | 0.807179 | 5.736059e-50 | -8.615850e-47 |
| Msa0063580 | Msa0413720 | 0.810765 | 9.794907e-51 | -8.615850e-47 |
| Msa0073820 | Msa0413720 | 0.808429 | 3.110731e-50 | -8.615850e-47 |
| Msa0090590 | Msa0413720 | 0.815295 | 9.945722e-52 | -8.615850e-47 |
| Msa0110970 | Msa0413720 | 0.812849 | 3.447084e-51 | -8.615850e-47 |
| Msa0122630 | Msa0413720 | 0.802619 | 5.147788e-49 | -8.615850e-47 |
| Msa0141430 | Msa0413720 | 0.800061 | 1.719495e-48 | -8.615850e-47 |
| Msa0183830 | Msa0413720 | 0.805318 | 1.414594e-49 | -8.615850e-47 |
| Msa0185700 | Msa0413720 | 0.840007 | 1.126477e-57 | -8.615850e-47 |
| Msa0188140 | Msa0413720 | 0.800344 | 1.505888e-48 | -8.615850e-47 |
| Msa0365850 | Msa0413720 | 0.881114 | 3.141689e-70 | -8.615850e-47 |
| Msa0413720 | Msa0422850 | 0.808199 | 3.483391e-50 | -8.615850e-47 |
| Msa0413720 | Msa0422930 | 0.804382 | 2.218566e-49 | -8.615850e-47 |
| Msa0413720 | Msa0425940 | 0.846426 | 2.188947e-59 | -8.615850e-47 |
| Msa0413720 | Msa0426020 | 0.833151 | 6.287892e-56 | -8.615850e-47 |
| Msa0413720 | Msa0426160 | 0.857608 | 1.453322e-62 | -8.615850e-47 |
| Msa0413720 | Msa0450050 | 0.804419 | 2.179861e-49 | -8.615850e-47 |
| Msa0413720 | Msa0458770 | 0.806552 | 7.781026e-50 | -8.615850e-47 |
| Msa0413720 | Msa0467300 | 0.809615 | 1.734025e-50 | -8.615850e-47 |
| Msa0413720 | Msa0505370 | 0.997598 | 1.781455e-245 | -8.615850e-47 |
| Msa0413720 | Msa0527600 | 0.817325 | 3.497078e-52 | -8.615850e-47 |
| Msa0413720 | Msa0546840 | 0.812881 | 3.391149e-51 | -8.615850e-47 |
| Msa0413720 | Msa0563530 | 0.800701 | 1.273817e-48 | -8.615850e-47 |
| Msa0413720 | Msa0564030 | 0.818342 | 2.060548e-52 | -8.615850e-47 |
| Msa0413720 | Msa0574890 | 0.832805 | 7.665903e-56 | -8.615850e-47 |
| Msa0413720 | Msa0576690 | 0.812627 | 3.855128e-51 | -8.615850e-47 |
| Msa0413720 | Msa0618040 | 0.803879 | 2.824085e-49 | -8.615850e-47 |
| Msa0413720 | Msa0652400 | 0.823832 | 1.119981e-53 | -8.615850e-47 |
| Msa0413720 | Msa0654540 | 0.821752 | 3.417059e-53 | -8.615850e-47 |
| Msa0413720 | Msa0696620 | 0.806342 | 8.617723e-50 | -8.615850e-47 |
| Msa0413720 | Msa0746610 | 0.820676 | 6.047936e-53 | -8.615850e-47 |
| Msa0413720 | Msa0825020 | 0.857091 | 2.067209e-62 | -8.615850e-47 |
| Msa0413720 | Msa0864310 | 0.852378 | 4.802266e-61 | -8.615850e-47 |
| Msa0413720 | Msa0910390 | 0.800054 | 1.725587e-48 | -8.615850e-47 |
| Msa0413720 | Msa0930780 | 0.819385 | 1.194125e-52 | -8.615850e-47 |
| Msa0413720 | Msa0969400 | 0.805491 | 1.301325e-49 | -8.615850e-47 |
| Msa0413720 | Msa0969700 | 0.806565 | 7.733554e-50 | -8.615850e-47 |
| Msa0413720 | Msa0982690 | 0.810926 | 9.038639e-51 | -8.615850e-47 |
| Msa0413720 | Msa1018050 | 0.812895 | 3.367531e-51 | -8.615850e-47 |
| Msa0413720 | Msa1018790 | 0.803159 | 3.981693e-49 | -8.615850e-47 |
| Msa0413720 | Msa1055690 | 0.811395 | 7.153568e-51 | -8.615850e-47 |
| Msa0413720 | Msa1097640 | 0.801857 | 7.387374e-49 | -8.615850e-47 |
| Msa0413720 | Msa1165300 | 0.814357 | 1.605224e-51 | -8.615850e-47 |
| Msa0413720 | Msa1188940 | 0.815202 | 1.043153e-51 | -8.615850e-47 |
| Msa0413720 | Msa1226620 | 0.941350 | 4.846362e-101 | -8.615850e-47 |
| Msa0413720 | Msa1252190 | 0.803324 | 3.680246e-49 | -8.615850e-47 |
| Msa0413720 | Msa1284520 | 0.816927 | 4.295293e-52 | -8.615850e-47 |
| Msa0413720 | Msa1292830 | 0.802460 | 5.550541e-49 | -8.615850e-47 |
| Msa0413720 | Msa1324000 | 0.825795 | 3.857292e-54 | -8.615850e-47 |
| Msa0413720 | Msa1351760 | 0.807527 | 4.839673e-50 | -8.615850e-47 |
| Msa0413720 | Msa1379570 | 0.832345 | 9.968576e-56 | -8.615850e-47 |
| Msa0413720 | Msa1382310 | 0.808763 | 2.639887e-50 | -8.615850e-47 |
| Msa0413720 | Msa1389950 | 0.807113 | 5.923483e-50 | -8.615850e-47 |
| Msa0413720 | Msa1398480 | 0.848448 | 6.089069e-60 | -8.615850e-47 |
| Msa0413720 | Msa1429250 | 0.813947 | 1.977713e-51 | -8.615850e-47 |
| Msa0413720 | Msa1447230 | 0.800333 | 1.513764e-48 | -8.615850e-47 |
| Msa0413720 | Msa1454020 | 0.830888 | 2.278963e-55 | -8.615850e-47 |
| Msa0238890 | Msa0413720 | 0.820149 | 7.991198e-53 | -8.615850e-47 |
| Msa0264870 | Msa0413720 | 0.820966 | 5.187282e-53 | -8.615850e-47 |
| Msa0277400 | Msa0413720 | 0.816388 | 5.675645e-52 | -8.615850e-47 |
| Msa0277630 | Msa0413720 | 0.810640 | 1.042515e-50 | -8.615850e-47 |
| Msa0289890 | Msa0413720 | 0.810065 | 1.387150e-50 | -8.615850e-47 |
| Msa0322570 | Msa0413720 | 0.802740 | 4.860938e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413720 | MtrunA17_Chr3g0106261 | 95.263 | 380 | 18 | 0 | 1 | 380 | 1 | 380 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413720 | AT2G30200.1 | 82.985 | 335 | 56 | 1 | 47 | 380 | 59 | 393 | 0.0 | 556 |
| Msa0413720 | AT2G30200.2 | 82.578 | 287 | 49 | 1 | 47 | 332 | 59 | 345 | 3.58e-168 | 474 |
Find 122 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCGTTTGCTGGGGCTTTC+AGG | 0.094720 | 3_2:+58197122 | Msa0413720:CDS |
| CAAGAAAGCCAATGAGATTT+TGG | 0.134267 | 3_2:+58195540 | Msa0413720:CDS |
| CTTCTTGATGTATGCATTAA+TGG | 0.181932 | 3_2:+58195660 | Msa0413720:CDS |
| GCATTCAAATGTTGGATTTA+TGG | 0.185585 | 3_2:-58195121 | None:intergenic |
| TTATTTCATCTAAAATTTAT+TGG | 0.214877 | 3_2:-58199030 | None:intergenic |
| TATACTGCTCTGGCGTTTGC+TGG | 0.229112 | 3_2:+58197112 | Msa0413720:CDS |
| CATTCAAATGTTGGATTTAT+GGG | 0.229579 | 3_2:-58195120 | None:intergenic |
| GTGGCGAAAACCCTAGATTT+AGG | 0.235244 | 3_2:-58195284 | None:intergenic |
| AATATCTTCTTTATTGTGTC+AGG | 0.273256 | 3_2:-58198370 | None:intergenic |
| CAGGTGCGCCTGGCTGTTGC+AGG | 0.273267 | 3_2:+58198223 | Msa0413720:intron |
| GTGATCTAACTTATTCAAAA+TGG | 0.282898 | 3_2:-58198927 | None:intergenic |
| CGTAAACTTTCTACCTTTCC+AGG | 0.283273 | 3_2:-58198559 | None:intergenic |
| CCTTACTGGACATAGGTAAT+TGG | 0.315959 | 3_2:-58197946 | None:intergenic |
| CTTTGAAGATGGACTGAAAT+TGG | 0.319783 | 3_2:+58197664 | Msa0413720:CDS |
| ACCACAATTTCCCTAAATCT+AGG | 0.322897 | 3_2:+58195273 | Msa0413720:CDS |
| TGCAATATTGTAGTTTGTAT+TGG | 0.335872 | 3_2:-58198765 | None:intergenic |
| AGCTTCAGGCACTTCCTGAT+TGG | 0.338484 | 3_2:-58197907 | None:intergenic |
| GCTGTCTCTGGAGGCATAAA+AGG | 0.342232 | 3_2:+58198076 | Msa0413720:CDS |
| ATCTGAACCTTCTCAGCTTC+AGG | 0.348175 | 3_2:-58197921 | None:intergenic |
| TGGAAATGACTGGTATTCTT+GGG | 0.360068 | 3_2:-58198321 | None:intergenic |
| CTCATGGTGGCAGGTGCGCC+TGG | 0.360470 | 3_2:+58198213 | Msa0413720:intron |
| TGCTGCTGTTGAGCTACTTC+GGG | 0.360693 | 3_2:+58197024 | Msa0413720:CDS |
| TTCTTGATGTATGCATTAAT+GGG | 0.361976 | 3_2:+58195661 | Msa0413720:CDS |
| TTGGAAATGACTGGTATTCT+TGG | 0.363800 | 3_2:-58198322 | None:intergenic |
| TGGACTCTTCAGGTTATTGC+TGG | 0.367068 | 3_2:+58198657 | Msa0413720:intron |
| TCGGAGCTTAAGAAGTTTGC+AGG | 0.367846 | 3_2:+58198721 | Msa0413720:exon |
| GCTGAAGAAAAGCTATGAAT+TGG | 0.370795 | 3_2:+58198534 | Msa0413720:CDS |
| ACTGTTGTTTCCCATTGAAC+AGG | 0.383548 | 3_2:-58198490 | None:intergenic |
| AATCAGCTACAGAAGCTTCA+TGG | 0.391257 | 3_2:-58195334 | None:intergenic |
| TGGCGAAAACCCTAGATTTA+GGG | 0.391319 | 3_2:-58195283 | None:intergenic |
| TTATTCAAAATGGAACCTAT+TGG | 0.401232 | 3_2:-58198917 | None:intergenic |
| CAGGTTCCATAAAACTAGTA+TGG | 0.401234 | 3_2:-58198252 | None:intergenic |
| TGCTGGAATTGTCAAAAGAA+TGG | 0.402849 | 3_2:+58198674 | Msa0413720:CDS |
| ATACTGCTCTGGCGTTTGCT+GGG | 0.405436 | 3_2:+58197113 | Msa0413720:CDS |
| TGCGTTTCTCTTCCCTGGTC+AGG | 0.406940 | 3_2:+58195370 | Msa0413720:CDS |
| GTTCGATGTGGGAAGAAGAT+AGG | 0.407548 | 3_2:-58195236 | None:intergenic |
| TGACACAATAAAGAAGATAT+TGG | 0.409601 | 3_2:+58198372 | Msa0413720:CDS |
| GAAATGTTGCATTCAAATGT+TGG | 0.410318 | 3_2:-58195129 | None:intergenic |
| AAAGAAGATATTGGCACAAC+AGG | 0.412880 | 3_2:+58198381 | Msa0413720:CDS |
| TTCGATGTGGGAAGAAGATA+GGG | 0.417089 | 3_2:-58195235 | None:intergenic |
| GTTTCATGTGGTTTGAGCTT+AGG | 0.423256 | 3_2:+58197085 | Msa0413720:CDS |
| TTGCTGCTGTTGAGCTACTT+CGG | 0.426896 | 3_2:+58197023 | Msa0413720:CDS |
| CAGCAAGACTTGTGACATAC+AGG | 0.430360 | 3_2:-58197006 | None:intergenic |
| CCCTAGATTTAGGGAAATTG+TGG | 0.431468 | 3_2:-58195274 | None:intergenic |
| GTTGTGTGATGCAGCCAATC+AGG | 0.434474 | 3_2:+58197893 | Msa0413720:CDS |
| TCCAATGCGTTTCTCTTCCC+TGG | 0.436188 | 3_2:+58195365 | Msa0413720:CDS |
| GACTGAAATTGGTGAAACTA+AGG | 0.439212 | 3_2:+58197675 | Msa0413720:CDS |
| AGGTTACTTACCCTGTTCAA+TGG | 0.439364 | 3_2:+58198479 | Msa0413720:intron |
| TGGCTGCATCACACAACTGC+TGG | 0.441780 | 3_2:-58197887 | None:intergenic |
| AGCCTTGAAAGACTTCGCTT+TGG | 0.442255 | 3_2:-58198116 | None:intergenic |
| AGAAGAAGACATTGTAGAGA+TGG | 0.442899 | 3_2:-58195192 | None:intergenic |
| CCACAATTTCCCTAAATCTA+GGG | 0.450894 | 3_2:+58195274 | Msa0413720:CDS |
| TTCAAAATGGAACCTATTGG+TGG | 0.458831 | 3_2:-58198914 | None:intergenic |
| GGAACCTGCAGTGTCAAGAT+TGG | 0.459211 | 3_2:+58198267 | Msa0413720:CDS |
| TAAATACCCCAAAATCTCAT+TGG | 0.463483 | 3_2:-58195548 | None:intergenic |
| TGTTGGTTGAAAATTTGAAA+TGG | 0.463497 | 3_2:+58199054 | Msa0413720:three_prime_UTR |
| GGTTACTTACCCTGTTCAAT+GGG | 0.466160 | 3_2:+58198480 | Msa0413720:intron |
| TAGGGAAACTATGCTGTCTC+TGG | 0.470485 | 3_2:+58198064 | Msa0413720:intron |
| GCTTCCAATCTTGACACTGC+AGG | 0.476548 | 3_2:-58198271 | None:intergenic |
| ATATCTTCTTTATTGTGTCA+GGG | 0.486151 | 3_2:-58198369 | None:intergenic |
| CTGAAGAAAAGCTATGAATT+GGG | 0.506499 | 3_2:+58198535 | Msa0413720:CDS |
| AGCCAAAGCGAAGTCTTTCA+AGG | 0.506804 | 3_2:+58198114 | Msa0413720:CDS |
| GGAAAGCGCCTGCAACAGCC+AGG | 0.507270 | 3_2:-58198231 | None:intergenic |
| CTATGAATTGGGACCTGGAA+AGG | 0.507524 | 3_2:+58198546 | Msa0413720:CDS |
| GGTGCACAAGCTGTTGGAAT+GGG | 0.510482 | 3_2:+58195478 | Msa0413720:CDS |
| CGATTTGTAAGCTTTGAAGA+TGG | 0.513263 | 3_2:+58197653 | Msa0413720:intron |
| TGCGGAAAATATACCTGACC+AGG | 0.515702 | 3_2:-58195383 | None:intergenic |
| CTTAGGAGAGTATACTGCTC+TGG | 0.517475 | 3_2:+58197102 | Msa0413720:CDS |
| GAATTCAACAGTTATCAGTC+AGG | 0.518626 | 3_2:+58195698 | Msa0413720:CDS |
| ACTAAGGGGTGAAGCCATGC+AGG | 0.520103 | 3_2:+58197691 | Msa0413720:CDS |
| AGATTGAGATCCAGTGGAAA+TGG | 0.524305 | 3_2:-58195306 | None:intergenic |
| GCATTTACGTTGGAAATGAC+TGG | 0.530559 | 3_2:-58198331 | None:intergenic |
| ATTGTGTCAGGGTCTGTATG+TGG | 0.531264 | 3_2:-58198358 | None:intergenic |
| TCTTGGGGTTCTAATGTCTG+TGG | 0.536650 | 3_2:-58198305 | None:intergenic |
| TGAGCTACTTCGGGCACGTG+AGG | 0.538884 | 3_2:+58197033 | Msa0413720:CDS |
| TGAGAGTGTGGGTTCGATGT+GGG | 0.541678 | 3_2:-58195247 | None:intergenic |
| GGAAGTGCCTGAAGCTGAGA+AGG | 0.545626 | 3_2:+58197914 | Msa0413720:CDS |
| GGAAATGACTGGTATTCTTG+GGG | 0.548400 | 3_2:-58198320 | None:intergenic |
| TACTGCTCTGGCGTTTGCTG+GGG | 0.549969 | 3_2:+58197114 | Msa0413720:CDS |
| TTGAAAATTTGAAATGGCAA+TGG | 0.553034 | 3_2:+58199060 | Msa0413720:three_prime_UTR |
| TTGAGAGTGTGGGTTCGATG+TGG | 0.553382 | 3_2:-58195248 | None:intergenic |
| AAAAGCTATGAATTGGGACC+TGG | 0.554297 | 3_2:+58198541 | Msa0413720:CDS |
| CATGGTTAGTGTGGTAGGAC+TGG | 0.554574 | 3_2:+58197851 | Msa0413720:CDS |
| GGTGCCATGGTTAGTGTGGT+AGG | 0.555350 | 3_2:+58197846 | Msa0413720:CDS |
| ACCAGGGAAGAGAAACGCAT+TGG | 0.557047 | 3_2:-58195366 | None:intergenic |
| GTGAAGACTCTTCTATCCAA+GGG | 0.563734 | 3_2:+58198511 | Msa0413720:CDS |
| TTGTACAAAACTGCAGCAGA+AGG | 0.572446 | 3_2:-58195520 | None:intergenic |
| CTGTTGTTTCCCATTGAACA+GGG | 0.572523 | 3_2:-58198489 | None:intergenic |
| GAGCTACTTCGGGCACGTGA+GGG | 0.576524 | 3_2:+58197034 | Msa0413720:CDS |
| GATTCTGTTGATGTTTCATG+TGG | 0.577223 | 3_2:+58197073 | Msa0413720:CDS |
| AGCTACAGAAGCTTCATGGA+TGG | 0.577351 | 3_2:-58195330 | None:intergenic |
| CTACTTCGGGCACGTGAGGG+AGG | 0.580356 | 3_2:+58197037 | Msa0413720:CDS |
| AGTGAAGACTCTTCTATCCA+AGG | 0.584582 | 3_2:+58198510 | Msa0413720:CDS |
| GCAGGACATTGCTATGTGTG+TGG | 0.585638 | 3_2:+58198739 | Msa0413720:three_prime_UTR |
| GGGTGCACAAGCTGTTGGAA+TGG | 0.590984 | 3_2:+58195477 | Msa0413720:intron |
| GAAGTCTTTCAAGGCTCGAA+TGG | 0.594481 | 3_2:+58198123 | Msa0413720:CDS |
| TCAAGAACCTTACTGGACAT+AGG | 0.602304 | 3_2:-58197953 | None:intergenic |
| TAAAGGTGCCATGGTTAGTG+TGG | 0.602685 | 3_2:+58197842 | Msa0413720:CDS |
| GATGGAAGATTGAGATCCAG+TGG | 0.603030 | 3_2:-58195312 | None:intergenic |
| TTGTAGGGTGCACAAGCTGT+TGG | 0.608275 | 3_2:+58195472 | Msa0413720:intron |
| GGTTGTGGAGAATGCGAGAG+TGG | 0.610867 | 3_2:-58195157 | None:intergenic |
| CATAAAAGGAATAGAAGTCG+TGG | 0.615412 | 3_2:+58198090 | Msa0413720:CDS |
| GATGCTGCTGATGCTACTAA+AGG | 0.624615 | 3_2:+58197825 | Msa0413720:CDS |
| AGACTTGTGACATACAGGGC+AGG | 0.626537 | 3_2:-58197001 | None:intergenic |
| TTGAGATCCAGTGGAAATGG+TGG | 0.628005 | 3_2:-58195303 | None:intergenic |
| GGAAACTATGCTGTCTCTGG+AGG | 0.631276 | 3_2:+58198067 | Msa0413720:CDS |
| GGTAGGACTGGACTCAGAGA+AGG | 0.637373 | 3_2:+58197863 | Msa0413720:CDS |
| TGATGCTACTAAAGGTGCCA+TGG | 0.641755 | 3_2:+58197833 | Msa0413720:CDS |
| TCGATGTGGGAAGAAGATAG+GGG | 0.642629 | 3_2:-58195234 | None:intergenic |
| AGCAAGACTTGTGACATACA+GGG | 0.652472 | 3_2:-58197005 | None:intergenic |
| ACTACCACAGATTACCTGCA+TGG | 0.656968 | 3_2:-58197705 | None:intergenic |
| GCTAAATCAAAGAGAAACAC+GGG | 0.660284 | 3_2:+58198817 | Msa0413720:three_prime_UTR |
| CAGTCCTACCACACTAACCA+TGG | 0.663013 | 3_2:-58197850 | None:intergenic |
| TGTATGCATTAATGGGCCGA+AGG | 0.664486 | 3_2:+58195668 | Msa0413720:CDS |
| GGTGCTGATATTGAAAACAT+CGG | 0.665514 | 3_2:+58198702 | Msa0413720:CDS |
| AGCTAAATCAAAGAGAAACA+CGG | 0.666440 | 3_2:+58198816 | Msa0413720:three_prime_UTR |
| CTGAAATTGGTGAAACTAAG+GGG | 0.669315 | 3_2:+58197677 | Msa0413720:CDS |
| ATTGTCAAAAGAATGGACAA+AGG | 0.682335 | 3_2:+58198681 | Msa0413720:CDS |
| ACTGAAATTGGTGAAACTAA+GGG | 0.694892 | 3_2:+58197676 | Msa0413720:CDS |
| GCGGAAAATATACCTGACCA+GGG | 0.695587 | 3_2:-58195382 | None:intergenic |
| TGAAGACTCTTCTATCCAAG+GGG | 0.710603 | 3_2:+58198512 | Msa0413720:CDS |
| ATGTGGCAGAGCATTTACGT+TGG | 0.714429 | 3_2:-58198341 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTCATCTAAAATTTAT+TGG | - | chr3_2:58199033-58199052 | None:intergenic | 10.0% |
| !!! | GTTTAAATTACAACTATTTT+TGG | + | chr3_2:58195584-58195603 | Msa0413720:intron | 15.0% |
| !!! | TTGTTTTGTATTATGTATTT+AGG | + | chr3_2:58195631-58195650 | Msa0413720:intron | 15.0% |
| !! | AAGTACAAAAATAATGAAAT+TGG | - | chr3_2:58195961-58195980 | None:intergenic | 15.0% |
| !! | ATAAAAAAAACTTCTACTAT+TGG | + | chr3_2:58196153-58196172 | Msa0413720:intron | 15.0% |
| !! | TTTATAAACAACAAATTTCA+TGG | - | chr3_2:58196933-58196952 | None:intergenic | 15.0% |
| !!! | ATGAAATTTGTTGTTTATAA+AGG | + | chr3_2:58196932-58196951 | Msa0413720:intron | 15.0% |
| !! | AAGAGAAAAATATGTAATTA+TGG | + | chr3_2:58197283-58197302 | Msa0413720:intron | 15.0% |
| !! | TTTAAAAAAAAACAACTCAA+AGG | - | chr3_2:58197583-58197602 | None:intergenic | 15.0% |
| !!! | AAATTGACTGTATTATATTT+TGG | + | chr3_2:58198041-58198060 | Msa0413720:intron | 15.0% |
| !!! | ATTTTAGATGAAATAATTGT+TGG | + | chr3_2:58199037-58199056 | Msa0413720:three_prime_UTR | 15.0% |
| !!! | CAATGAATTTTGATTGAAAT+TGG | + | chr3_2:58195422-58195441 | Msa0413720:intron | 20.0% |
| !!! | ATTTGATTTGATTTGATTGT+AGG | + | chr3_2:58195456-58195475 | Msa0413720:intron | 20.0% |
| !!! | TTTGATTTGATTTGATTGTA+GGG | + | chr3_2:58195457-58195476 | Msa0413720:intron | 20.0% |
| !!! | TCAAGATTGTTATTTTATTG+AGG | + | chr3_2:58195750-58195769 | Msa0413720:intron | 20.0% |
| !! | ACAAAAATAATGAAATTGGA+TGG | - | chr3_2:58195957-58195976 | None:intergenic | 20.0% |
| !! | GTTAACATTATCAATGAAAT+AGG | + | chr3_2:58196714-58196733 | Msa0413720:intron | 20.0% |
| !!! | TTTTTTGGACAAAAAATACA+TGG | - | chr3_2:58197178-58197197 | None:intergenic | 20.0% |
| !!! | AACATGGTAATCAATTTTTT+TGG | - | chr3_2:58197193-58197212 | None:intergenic | 20.0% |
| !! | ACAAATCGAATTAAATACAT+GGG | - | chr3_2:58197641-58197660 | None:intergenic | 20.0% |
| !! | TACAAATCGAATTAAATACA+TGG | - | chr3_2:58197642-58197661 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTAACTTCAAAAC+TGG | - | chr3_2:58198890-58198909 | None:intergenic | 20.0% |
| ! | CATTCAAATGTTGGATTTAT+GGG | - | chr3_2:58195123-58195142 | None:intergenic | 25.0% |
| ! | TAGAGATGGAAAAAGAATAA+GGG | - | chr3_2:58195181-58195200 | None:intergenic | 25.0% |
| !!! | ATTTTGATTGAAATTGGAAC+TGG | + | chr3_2:58195428-58195447 | Msa0413720:intron | 25.0% |
| !!! | TTTTGATTGAAATTGGAACT+GGG | + | chr3_2:58195429-58195448 | Msa0413720:intron | 25.0% |
| ! | TTCTTGATGTATGCATTAAT+GGG | + | chr3_2:58195661-58195680 | Msa0413720:CDS | 25.0% |
| !!! | AGATTGTTATTTTATTGAGG+TGG | + | chr3_2:58195753-58195772 | Msa0413720:intron | 25.0% |
| ! | TTCTTTATGATATGACGAAA+CGG | + | chr3_2:58195825-58195844 | Msa0413720:intron | 25.0% |
| ! | ATCTCAAATATTCCTAAACT+GGG | - | chr3_2:58195986-58196005 | None:intergenic | 25.0% |
| ! | TTTAATGTAACAGAAGTCTA+AGG | - | chr3_2:58196267-58196286 | None:intergenic | 25.0% |
| !!! | AATATGAGTTGGTTTGTAAT+CGG | + | chr3_2:58196428-58196447 | Msa0413720:intron | 25.0% |
| ! | TTGTTATAATAGTTCCAGTT+GGG | - | chr3_2:58196575-58196594 | None:intergenic | 25.0% |
| !!! | CTTTAAAATCATGATTACAG+AGG | - | chr3_2:58196805-58196824 | None:intergenic | 25.0% |
| !! | CTCTGTAATCATGATTTTAA+AGG | + | chr3_2:58196803-58196822 | Msa0413720:intron | 25.0% |
| ! | GGAATAAAAAGAGAATAAAG+AGG | + | chr3_2:58196824-58196843 | Msa0413720:intron | 25.0% |
| ! | AAATTACATATATGCCTCTA+TGG | - | chr3_2:58196958-58196977 | None:intergenic | 25.0% |
| ! | GTTGGGAAAAATATGAAAAA+CGG | - | chr3_2:58197244-58197263 | None:intergenic | 25.0% |
| ! | CAAATATTTCTTGAAACGTT+GGG | - | chr3_2:58197261-58197280 | None:intergenic | 25.0% |
| ! | TCAAATATTTCTTGAAACGT+TGG | - | chr3_2:58197262-58197281 | None:intergenic | 25.0% |
| ! | AAACTTTAAATGACTCATAC+TGG | - | chr3_2:58197385-58197404 | None:intergenic | 25.0% |
| ! | AGTCATTACAATCTAGTAAA+TGG | + | chr3_2:58197423-58197442 | Msa0413720:intron | 25.0% |
| ! | TGTAAATCAAGACAAAAAAG+TGG | - | chr3_2:58197609-58197628 | None:intergenic | 25.0% |
| !!! | TGACTGTATTATATTTTGGT+AGG | + | chr3_2:58198045-58198064 | Msa0413720:intron | 25.0% |
| !!! | GACTGTATTATATTTTGGTA+GGG | + | chr3_2:58198046-58198065 | Msa0413720:intron | 25.0% |
| ! | ATATCTTCTTTATTGTGTCA+GGG | - | chr3_2:58198372-58198391 | None:intergenic | 25.0% |
| ! | AATATCTTCTTTATTGTGTC+AGG | - | chr3_2:58198373-58198392 | None:intergenic | 25.0% |
| ! | TGACACAATAAAGAAGATAT+TGG | + | chr3_2:58198372-58198391 | Msa0413720:CDS | 25.0% |
| ! | TAGCAGAATTATAAAACTAG+AGG | - | chr3_2:58198623-58198642 | None:intergenic | 25.0% |
| !!! | CTGCTAACTTTTATTTTATC+TGG | + | chr3_2:58198637-58198656 | Msa0413720:intron | 25.0% |
| !! | TGCAATATTGTAGTTTGTAT+TGG | - | chr3_2:58198768-58198787 | None:intergenic | 25.0% |
| ! | AAAAAACTTAATCCACCAAT+AGG | + | chr3_2:58198902-58198921 | Msa0413720:three_prime_UTR | 25.0% |
| ! | TTATTCAAAATGGAACCTAT+TGG | - | chr3_2:58198920-58198939 | None:intergenic | 25.0% |
| ! | GTGATCTAACTTATTCAAAA+TGG | - | chr3_2:58198930-58198949 | None:intergenic | 25.0% |
| !! | TGTTGGTTGAAAATTTGAAA+TGG | + | chr3_2:58199054-58199073 | Msa0413720:three_prime_UTR | 25.0% |
| !! | TTGAAAATTTGAAATGGCAA+TGG | + | chr3_2:58199060-58199079 | Msa0413720:three_prime_UTR | 25.0% |
| !!! | GTTTTGAAGACAAAAACACT+TGG | + | chr3_2:58195071-58195090 | Msa0413720:five_prime_UTR | 30.0% |
| GCATTCAAATGTTGGATTTA+TGG | - | chr3_2:58195124-58195143 | None:intergenic | 30.0% | |
| GAAATGTTGCATTCAAATGT+TGG | - | chr3_2:58195132-58195151 | None:intergenic | 30.0% | |
| GTAGAGATGGAAAAAGAATA+AGG | - | chr3_2:58195182-58195201 | None:intergenic | 30.0% | |
| ! | AAGAAAGCCAATGAGATTTT+GGG | + | chr3_2:58195541-58195560 | Msa0413720:CDS | 30.0% |
| TAAATACCCCAAAATCTCAT+TGG | - | chr3_2:58195551-58195570 | None:intergenic | 30.0% | |
| CTTCTTGATGTATGCATTAA+TGG | + | chr3_2:58195660-58195679 | Msa0413720:CDS | 30.0% | |
| !!! | TGTTATTTTATTGAGGTGGA+AGG | + | chr3_2:58195757-58195776 | Msa0413720:intron | 30.0% |
| !! | GTTATTTTATTGAGGTGGAA+GGG | + | chr3_2:58195758-58195777 | Msa0413720:intron | 30.0% |
| ! | TTAGTGTTATCGATTGTGAA+TGG | + | chr3_2:58195879-58195898 | Msa0413720:intron | 30.0% |
| TAATGAAATTGGATGGAATG+TGG | - | chr3_2:58195950-58195969 | None:intergenic | 30.0% | |
| TCTCAAATATTCCTAAACTG+GGG | - | chr3_2:58195985-58196004 | None:intergenic | 30.0% | |
| CATCTCAAATATTCCTAAAC+TGG | - | chr3_2:58195987-58196006 | None:intergenic | 30.0% | |
| CAGTTTAGGAATATTTGAGA+TGG | + | chr3_2:58195985-58196004 | Msa0413720:intron | 30.0% | |
| TCCATTTACAAACAACAGAA+AGG | + | chr3_2:58196046-58196065 | Msa0413720:intron | 30.0% | |
| ! | TCCTTTCTGTTGTTTGTAAA+TGG | - | chr3_2:58196050-58196069 | None:intergenic | 30.0% |
| ATCATCTATACTTGATCAAC+AGG | - | chr3_2:58196375-58196394 | None:intergenic | 30.0% | |
| CAACTCATATTACACTGTTA+TGG | - | chr3_2:58196419-58196438 | None:intergenic | 30.0% | |
| CATAACAGTGTAATATGAGT+TGG | + | chr3_2:58196417-58196436 | Msa0413720:intron | 30.0% | |
| ACAATTAGAAGTTGAATCAC+TGG | + | chr3_2:58196478-58196497 | Msa0413720:intron | 30.0% | |
| GTTGTTATAATAGTTCCAGT+TGG | - | chr3_2:58196576-58196595 | None:intergenic | 30.0% | |
| ! | CCAAGCCTTTTAATATTAGA+CGG | + | chr3_2:58196601-58196620 | Msa0413720:intron | 30.0% |
| ! | CAAGCCTTTTAATATTAGAC+GGG | + | chr3_2:58196602-58196621 | Msa0413720:intron | 30.0% |
| ! | AAGCCTTTTAATATTAGACG+GGG | + | chr3_2:58196603-58196622 | Msa0413720:intron | 30.0% |
| AGATAAATGCTCTCTTATCA+GGG | - | chr3_2:58196660-58196679 | None:intergenic | 30.0% | |
| TAAAATCATGATTACAGAGG+AGG | - | chr3_2:58196802-58196821 | None:intergenic | 30.0% | |
| TATGCATTCTAGTGTAGAAA+AGG | - | chr3_2:58196878-58196897 | None:intergenic | 30.0% | |
| ATATGTAATTATGGCGTATG+TGG | + | chr3_2:58197292-58197311 | Msa0413720:intron | 30.0% | |
| AATTCTACTGTCATGGTAAA+AGG | - | chr3_2:58197318-58197337 | None:intergenic | 30.0% | |
| TTTACCATGACAGTAGAATT+AGG | + | chr3_2:58197318-58197337 | Msa0413720:intron | 30.0% | |
| ! | TTTTCCTAATTCTACTGTCA+TGG | - | chr3_2:58197325-58197344 | None:intergenic | 30.0% |
| ATTCCATCTATGAGAAGTTT+AGG | + | chr3_2:58197462-58197481 | Msa0413720:intron | 30.0% | |
| ACTGAAATTGGTGAAACTAA+GGG | + | chr3_2:58197676-58197695 | Msa0413720:CDS | 30.0% | |
| ! | TAGAAACAGAATTTTGCCTA+AGG | - | chr3_2:58197997-58198016 | None:intergenic | 30.0% |
| AATTGCACTTCTAATGCAAT+TGG | + | chr3_2:58198455-58198474 | Msa0413720:intron | 30.0% | |
| CTGAAGAAAAGCTATGAATT+GGG | + | chr3_2:58198535-58198554 | Msa0413720:CDS | 30.0% | |
| !! | TTATTTTATCTGGACTCTTC+AGG | + | chr3_2:58198647-58198666 | Msa0413720:intron | 30.0% |
| ATTGTCAAAAGAATGGACAA+AGG | + | chr3_2:58198681-58198700 | Msa0413720:CDS | 30.0% | |
| AGCTAAATCAAAGAGAAACA+CGG | + | chr3_2:58198816-58198835 | Msa0413720:three_prime_UTR | 30.0% | |
| TGGAAAAAGAATAAGGGTTG+TGG | - | chr3_2:58195175-58195194 | None:intergenic | 35.0% | |
| AGAAGAAGACATTGTAGAGA+TGG | - | chr3_2:58195195-58195214 | None:intergenic | 35.0% | |
| AAGAAGATAGGGGAAAAAGT+AGG | - | chr3_2:58195227-58195246 | None:intergenic | 35.0% | |
| !! | ATTGTGGTTTTTGAGAGTGT+GGG | - | chr3_2:58195261-58195280 | None:intergenic | 35.0% |
| !! | AATTGTGGTTTTTGAGAGTG+TGG | - | chr3_2:58195262-58195281 | None:intergenic | 35.0% |
| ACCACAATTTCCCTAAATCT+AGG | + | chr3_2:58195273-58195292 | Msa0413720:CDS | 35.0% | |
| CCACAATTTCCCTAAATCTA+GGG | + | chr3_2:58195274-58195293 | Msa0413720:CDS | 35.0% | |
| TGTTTATTCGCAATGCAATG+CGG | - | chr3_2:58195404-58195423 | None:intergenic | 35.0% | |
| ! | CAAGAAAGCCAATGAGATTT+TGG | + | chr3_2:58195540-58195559 | Msa0413720:CDS | 35.0% |
| ! | AGAAAGCCAATGAGATTTTG+GGG | + | chr3_2:58195542-58195561 | Msa0413720:CDS | 35.0% |
| ! | GTTGAATTCAGCTTTTCCTT+CGG | - | chr3_2:58195687-58195706 | None:intergenic | 35.0% |
| GAATTCAACAGTTATCAGTC+AGG | + | chr3_2:58195698-58195717 | Msa0413720:CDS | 35.0% | |
| AGAAAGCAAAGAATCTGCAA+TGG | + | chr3_2:58195903-58195922 | Msa0413720:intron | 35.0% | |
| ! | TTTTGTACTTTCCCCAGTTT+AGG | + | chr3_2:58195971-58195990 | Msa0413720:intron | 35.0% |
| CTGCATGATGAAAAAATCAG+TGG | - | chr3_2:58196025-58196044 | None:intergenic | 35.0% | |
| ATAACATATCCTCAGTGTGT+TGG | + | chr3_2:58196099-58196118 | Msa0413720:intron | 35.0% | |
| ACTCTCAAGTCTCAAATTTC+TGG | - | chr3_2:58196340-58196359 | None:intergenic | 35.0% | |
| GCTATTATATTTCACCCAAC+TGG | + | chr3_2:58196558-58196577 | Msa0413720:intron | 35.0% | |
| CCGTCTAATATTAAAAGGCT+TGG | - | chr3_2:58196604-58196623 | None:intergenic | 35.0% | |
| GAGATAAATGCTCTCTTATC+AGG | - | chr3_2:58196661-58196680 | None:intergenic | 35.0% | |
| GTTGTTTATAAAGGCCATAG+AGG | + | chr3_2:58196941-58196960 | Msa0413720:intron | 35.0% | |
| GATTCTGTTGATGTTTCATG+TGG | + | chr3_2:58197073-58197092 | Msa0413720:CDS | 35.0% | |
| GAGAAGCAGTAGAAAAAACA+TGG | - | chr3_2:58197209-58197228 | None:intergenic | 35.0% | |
| TGAAAAACGGAGACAATGAA+AGG | - | chr3_2:58197231-58197250 | None:intergenic | 35.0% | |
| GTAGAATTAGGAAAACCAAG+TGG | + | chr3_2:58197330-58197349 | Msa0413720:intron | 35.0% | |
| TATGTTAAGTGACCCAACTA+CGG | + | chr3_2:58197354-58197373 | Msa0413720:intron | 35.0% | |
| TTTATGTGCAAAACCACACA+GGG | - | chr3_2:58197543-58197562 | None:intergenic | 35.0% | |
| ATTTATGTGCAAAACCACAC+AGG | - | chr3_2:58197544-58197563 | None:intergenic | 35.0% | |
| !! | GTGTGGTTTTGCACATAAAT+TGG | + | chr3_2:58197544-58197563 | Msa0413720:intron | 35.0% |
| !! | CGATTTGTAAGCTTTGAAGA+TGG | + | chr3_2:58197653-58197672 | Msa0413720:intron | 35.0% |
| !! | CTTTGAAGATGGACTGAAAT+TGG | + | chr3_2:58197664-58197683 | Msa0413720:CDS | 35.0% |
| GACTGAAATTGGTGAAACTA+AGG | + | chr3_2:58197675-58197694 | Msa0413720:CDS | 35.0% | |
| CTGAAATTGGTGAAACTAAG+GGG | + | chr3_2:58197677-58197696 | Msa0413720:CDS | 35.0% | |
| GTAACCATTGTTCTTTATCC+AGG | + | chr3_2:58197803-58197822 | Msa0413720:intron | 35.0% | |
| !!! | ATCTGGCTTTTAACAACCTT+AGG | + | chr3_2:58197978-58197997 | Msa0413720:intron | 35.0% |
| CATAAAAGGAATAGAAGTCG+TGG | + | chr3_2:58198090-58198109 | Msa0413720:CDS | 35.0% | |
| CATTATTACTTTGCGAAAGG+TGG | - | chr3_2:58198186-58198205 | None:intergenic | 35.0% | |
| AGGCATTATTACTTTGCGAA+AGG | - | chr3_2:58198189-58198208 | None:intergenic | 35.0% | |
| ! | GTAATAATGCCTTTTCCTCA+TGG | + | chr3_2:58198197-58198216 | Msa0413720:intron | 35.0% |
| !!! | CGCTTTCCATACTAGTTTTA+TGG | + | chr3_2:58198246-58198265 | Msa0413720:CDS | 35.0% |
| CAGGTTCCATAAAACTAGTA+TGG | - | chr3_2:58198255-58198274 | None:intergenic | 35.0% | |
| TGGAAATGACTGGTATTCTT+GGG | - | chr3_2:58198324-58198343 | None:intergenic | 35.0% | |
| TTGGAAATGACTGGTATTCT+TGG | - | chr3_2:58198325-58198344 | None:intergenic | 35.0% | |
| AAAGAAGATATTGGCACAAC+AGG | + | chr3_2:58198381-58198400 | Msa0413720:CDS | 35.0% | |
| TCCAATGCAAAAGACATAAG+TGG | + | chr3_2:58198427-58198446 | Msa0413720:intron | 35.0% | |
| ! | ACCACTTATGTCTTTTGCAT+TGG | - | chr3_2:58198431-58198450 | None:intergenic | 35.0% |
| GCTGAAGAAAAGCTATGAAT+TGG | + | chr3_2:58198534-58198553 | Msa0413720:CDS | 35.0% | |
| TTCAAGAACACGGATAGTAT+AGG | - | chr3_2:58198588-58198607 | None:intergenic | 35.0% | |
| TCCATTGAGATTCAAGAACA+CGG | - | chr3_2:58198598-58198617 | None:intergenic | 35.0% | |
| TGCTGGAATTGTCAAAAGAA+TGG | + | chr3_2:58198674-58198693 | Msa0413720:CDS | 35.0% | |
| !! | GGTGCTGATATTGAAAACAT+CGG | + | chr3_2:58198702-58198721 | Msa0413720:CDS | 35.0% |
| ! | CACACATTTTCTCGTGAAAA+AGG | - | chr3_2:58198794-58198813 | None:intergenic | 35.0% |
| GCTAAATCAAAGAGAAACAC+GGG | + | chr3_2:58198817-58198836 | Msa0413720:three_prime_UTR | 35.0% | |
| TTCAAAATGGAACCTATTGG+TGG | - | chr3_2:58198917-58198936 | None:intergenic | 35.0% | |
| !!! | TTTTGTTACAGTGATGACGG+AGG | - | chr3_2:58195100-58195119 | None:intergenic | 40.0% |
| !!! | GGGTTTTGTTACAGTGATGA+CGG | - | chr3_2:58195103-58195122 | None:intergenic | 40.0% |
| TTCGATGTGGGAAGAAGATA+GGG | - | chr3_2:58195238-58195257 | None:intergenic | 40.0% | |
| CCCTAGATTTAGGGAAATTG+TGG | - | chr3_2:58195277-58195296 | None:intergenic | 40.0% | |
| TGGCGAAAACCCTAGATTTA+GGG | - | chr3_2:58195286-58195305 | None:intergenic | 40.0% | |
| AGATTGAGATCCAGTGGAAA+TGG | - | chr3_2:58195309-58195328 | None:intergenic | 40.0% | |
| AATCAGCTACAGAAGCTTCA+TGG | - | chr3_2:58195337-58195356 | None:intergenic | 40.0% | |
| TTGTACAAAACTGCAGCAGA+AGG | - | chr3_2:58195523-58195542 | None:intergenic | 40.0% | |
| ! | ATTTTATTGAGGTGGAAGGG+TGG | + | chr3_2:58195761-58195780 | Msa0413720:intron | 40.0% |
| AAGGGTGGAGTGAAATTTAG+TGG | + | chr3_2:58195776-58195795 | Msa0413720:intron | 40.0% | |
| TGACGAAACGGCATGAAATT+AGG | + | chr3_2:58195837-58195856 | Msa0413720:intron | 40.0% | |
| ATCATTCATCCAACACACTG+AGG | - | chr3_2:58196111-58196130 | None:intergenic | 40.0% | |
| GAATCACTGGAAATCACTTC+TGG | + | chr3_2:58196491-58196510 | Msa0413720:intron | 40.0% | |
| CAGCCCCGTCTAATATTAAA+AGG | - | chr3_2:58196609-58196628 | None:intergenic | 40.0% | |
| ! | CTTTTAATATTAGACGGGGC+TGG | + | chr3_2:58196607-58196626 | Msa0413720:intron | 40.0% |
| ATGATTACAGAGGAGGTCTA+AGG | - | chr3_2:58196795-58196814 | None:intergenic | 40.0% | |
| AGCAAGACTTGTGACATACA+GGG | - | chr3_2:58197008-58197027 | None:intergenic | 40.0% | |
| GTTTCATGTGGTTTGAGCTT+AGG | + | chr3_2:58197085-58197104 | Msa0413720:CDS | 40.0% | |
| GGTCACTTAACATATCCACT+TGG | - | chr3_2:58197348-58197367 | None:intergenic | 40.0% | |
| ATGTTAAGTGACCCAACTAC+GGG | + | chr3_2:58197355-58197374 | Msa0413720:intron | 40.0% | |
| AGGCCTAAACTTCTCATAGA+TGG | - | chr3_2:58197468-58197487 | None:intergenic | 40.0% | |
| CTGACAAGCTGAAAACAAAC+AGG | - | chr3_2:58197488-58197507 | None:intergenic | 40.0% | |
| GCATCCTGGATAAAGAACAA+TGG | - | chr3_2:58197810-58197829 | None:intergenic | 40.0% | |
| CCTTACTGGACATAGGTAAT+TGG | - | chr3_2:58197949-58197968 | None:intergenic | 40.0% | |
| CCAATTACCTATGTCCAGTA+AGG | + | chr3_2:58197946-58197965 | Msa0413720:intron | 40.0% | |
| TCAAGAACCTTACTGGACAT+AGG | - | chr3_2:58197956-58197975 | None:intergenic | 40.0% | |
| TATGTCCAGTAAGGTTCTTG+AGG | + | chr3_2:58197955-58197974 | Msa0413720:intron | 40.0% | |
| ! | ATAATGCCTTTTCCTCATGG+TGG | + | chr3_2:58198200-58198219 | Msa0413720:intron | 40.0% |
| GGAAATGACTGGTATTCTTG+GGG | - | chr3_2:58198323-58198342 | None:intergenic | 40.0% | |
| GCATTTACGTTGGAAATGAC+TGG | - | chr3_2:58198334-58198353 | None:intergenic | 40.0% | |
| AGGTTACTTACCCTGTTCAA+TGG | + | chr3_2:58198479-58198498 | Msa0413720:intron | 40.0% | |
| GGTTACTTACCCTGTTCAAT+GGG | + | chr3_2:58198480-58198499 | Msa0413720:intron | 40.0% | |
| !! | CTGTTGTTTCCCATTGAACA+GGG | - | chr3_2:58198492-58198511 | None:intergenic | 40.0% |
| !! | ACTGTTGTTTCCCATTGAAC+AGG | - | chr3_2:58198493-58198512 | None:intergenic | 40.0% |
| AGTGAAGACTCTTCTATCCA+AGG | + | chr3_2:58198510-58198529 | Msa0413720:CDS | 40.0% | |
| GTGAAGACTCTTCTATCCAA+GGG | + | chr3_2:58198511-58198530 | Msa0413720:CDS | 40.0% | |
| TGAAGACTCTTCTATCCAAG+GGG | + | chr3_2:58198512-58198531 | Msa0413720:CDS | 40.0% | |
| AAAAGCTATGAATTGGGACC+TGG | + | chr3_2:58198541-58198560 | Msa0413720:CDS | 40.0% | |
| CGTAAACTTTCTACCTTTCC+AGG | - | chr3_2:58198562-58198581 | None:intergenic | 40.0% | |
| TCCGTGTTCTTGAATCTCAA+TGG | + | chr3_2:58198594-58198613 | Msa0413720:intron | 40.0% | |
| TCGATGTGGGAAGAAGATAG+GGG | - | chr3_2:58195237-58195256 | None:intergenic | 45.0% | |
| GTTCGATGTGGGAAGAAGAT+AGG | - | chr3_2:58195239-58195258 | None:intergenic | 45.0% | |
| GTGGCGAAAACCCTAGATTT+AGG | - | chr3_2:58195287-58195306 | None:intergenic | 45.0% | |
| TTGAGATCCAGTGGAAATGG+TGG | - | chr3_2:58195306-58195325 | None:intergenic | 45.0% | |
| GATGGAAGATTGAGATCCAG+TGG | - | chr3_2:58195315-58195334 | None:intergenic | 45.0% | |
| AGCTACAGAAGCTTCATGGA+TGG | - | chr3_2:58195333-58195352 | None:intergenic | 45.0% | |
| GCGGAAAATATACCTGACCA+GGG | - | chr3_2:58195385-58195404 | None:intergenic | 45.0% | |
| TGCGGAAAATATACCTGACC+AGG | - | chr3_2:58195386-58195405 | None:intergenic | 45.0% | |
| ! | TGTATGCATTAATGGGCCGA+AGG | + | chr3_2:58195668-58195687 | Msa0413720:CDS | 45.0% |
| CGAAACGGCATGAAATTAGG+TGG | + | chr3_2:58195840-58195859 | Msa0413720:intron | 45.0% | |
| ATTGGATGGAATGTGGTGCA+GGG | - | chr3_2:58195943-58195962 | None:intergenic | 45.0% | |
| AATTGGATGGAATGTGGTGC+AGG | - | chr3_2:58195944-58195963 | None:intergenic | 45.0% | |
| TCACTGGAAATCACTTCTGG+TGG | + | chr3_2:58196494-58196513 | Msa0413720:intron | 45.0% | |
| GGCTGAAGCAGAGAATTAGA+TGG | - | chr3_2:58196983-58197002 | None:intergenic | 45.0% | |
| CAGCAAGACTTGTGACATAC+AGG | - | chr3_2:58197009-58197028 | None:intergenic | 45.0% | |
| TTGCTGCTGTTGAGCTACTT+CGG | + | chr3_2:58197023-58197042 | Msa0413720:CDS | 45.0% | |
| ! | CTTAGGAGAGTATACTGCTC+TGG | + | chr3_2:58197102-58197121 | Msa0413720:CDS | 45.0% |
| TGTTAAGTGACCCAACTACG+GGG | + | chr3_2:58197356-58197375 | Msa0413720:intron | 45.0% | |
| ATACTGGAAACCCCGTAGTT+GGG | - | chr3_2:58197369-58197388 | None:intergenic | 45.0% | |
| GCTTGTCAGCTTGTAGCATA+TGG | + | chr3_2:58197499-58197518 | Msa0413720:intron | 45.0% | |
| !! | GAAGAAGTATCTTCCCTGTG+TGG | + | chr3_2:58197527-58197546 | Msa0413720:intron | 45.0% |
| ACTACCACAGATTACCTGCA+TGG | - | chr3_2:58197708-58197727 | None:intergenic | 45.0% | |
| GATGCTGCTGATGCTACTAA+AGG | + | chr3_2:58197825-58197844 | Msa0413720:CDS | 45.0% | |
| !! | TGATGCTACTAAAGGTGCCA+TGG | + | chr3_2:58197833-58197852 | Msa0413720:CDS | 45.0% |
| !! | TAAAGGTGCCATGGTTAGTG+TGG | + | chr3_2:58197842-58197861 | Msa0413720:CDS | 45.0% |
| ATCTGAACCTTCTCAGCTTC+AGG | - | chr3_2:58197924-58197943 | None:intergenic | 45.0% | |
| CAGATCCTCAAGAACCTTAC+TGG | - | chr3_2:58197963-58197982 | None:intergenic | 45.0% | |
| CAGTAAGGTTCTTGAGGATC+TGG | + | chr3_2:58197961-58197980 | Msa0413720:intron | 45.0% | |
| TAGGGAAACTATGCTGTCTC+TGG | + | chr3_2:58198064-58198083 | Msa0413720:intron | 45.0% | |
| AGCCAAAGCGAAGTCTTTCA+AGG | + | chr3_2:58198114-58198133 | Msa0413720:CDS | 45.0% | |
| AGCCTTGAAAGACTTCGCTT+TGG | - | chr3_2:58198119-58198138 | None:intergenic | 45.0% | |
| GAAGTCTTTCAAGGCTCGAA+TGG | + | chr3_2:58198123-58198142 | Msa0413720:CDS | 45.0% | |
| ! | TCTTGGGGTTCTAATGTCTG+TGG | - | chr3_2:58198308-58198327 | None:intergenic | 45.0% |
| ! | ATGTGGCAGAGCATTTACGT+TGG | - | chr3_2:58198344-58198363 | None:intergenic | 45.0% |
| ATTGTGTCAGGGTCTGTATG+TGG | - | chr3_2:58198361-58198380 | None:intergenic | 45.0% | |
| TATTGGCACAACAGGTATGC+AGG | + | chr3_2:58198389-58198408 | Msa0413720:intron | 45.0% | |
| GCACTTCTAATGCAATTGGC+AGG | + | chr3_2:58198459-58198478 | Msa0413720:intron | 45.0% | |
| ! | ATAGCTTTTCTTCAGCCCCT+TGG | - | chr3_2:58198530-58198549 | None:intergenic | 45.0% |
| CTATGAATTGGGACCTGGAA+AGG | + | chr3_2:58198546-58198565 | Msa0413720:CDS | 45.0% | |
| ! | TGGACTCTTCAGGTTATTGC+TGG | + | chr3_2:58198657-58198676 | Msa0413720:intron | 45.0% |
| TCGGAGCTTAAGAAGTTTGC+AGG | + | chr3_2:58198721-58198740 | Msa0413720:exon | 45.0% | |
| ! | TGAGAGTGTGGGTTCGATGT+GGG | - | chr3_2:58195250-58195269 | None:intergenic | 50.0% |
| ! | TTGAGAGTGTGGGTTCGATG+TGG | - | chr3_2:58195251-58195270 | None:intergenic | 50.0% |
| ! | GTTTTCGCCACCATTTCCAC+TGG | + | chr3_2:58195296-58195315 | Msa0413720:CDS | 50.0% |
| TCCAATGCGTTTCTCTTCCC+TGG | + | chr3_2:58195365-58195384 | Msa0413720:CDS | 50.0% | |
| ACCAGGGAAGAGAAACGCAT+TGG | - | chr3_2:58195369-58195388 | None:intergenic | 50.0% | |
| TTGTAGGGTGCACAAGCTGT+TGG | + | chr3_2:58195472-58195491 | Msa0413720:intron | 50.0% | |
| GGTGCACAAGCTGTTGGAAT+GGG | + | chr3_2:58195478-58195497 | Msa0413720:CDS | 50.0% | |
| GTGCTCAAGTGCAGACAATG+CGG | - | chr3_2:58196752-58196771 | None:intergenic | 50.0% | |
| ! | TACAGAGGAGGTCTAAGGTC+TGG | - | chr3_2:58196790-58196809 | None:intergenic | 50.0% |
| AGACTTGTGACATACAGGGC+AGG | - | chr3_2:58197004-58197023 | None:intergenic | 50.0% | |
| TGCTGCTGTTGAGCTACTTC+GGG | + | chr3_2:58197024-58197043 | Msa0413720:CDS | 50.0% | |
| TATACTGCTCTGGCGTTTGC+TGG | + | chr3_2:58197112-58197131 | Msa0413720:CDS | 50.0% | |
| ATACTGCTCTGGCGTTTGCT+GGG | + | chr3_2:58197113-58197132 | Msa0413720:CDS | 50.0% | |
| CATACTGGAAACCCCGTAGT+TGG | - | chr3_2:58197370-58197389 | None:intergenic | 50.0% | |
| GAAGCCATGCAGGTAATCTG+TGG | + | chr3_2:58197701-58197720 | Msa0413720:intron | 50.0% | |
| TAGTAGCATCAGCAGCATCC+TGG | - | chr3_2:58197824-58197843 | None:intergenic | 50.0% | |
| CAGTCCTACCACACTAACCA+TGG | - | chr3_2:58197853-58197872 | None:intergenic | 50.0% | |
| CATGGTTAGTGTGGTAGGAC+TGG | + | chr3_2:58197851-58197870 | Msa0413720:CDS | 50.0% | |
| GTTGTGTGATGCAGCCAATC+AGG | + | chr3_2:58197893-58197912 | Msa0413720:CDS | 50.0% | |
| AGCTTCAGGCACTTCCTGAT+TGG | - | chr3_2:58197910-58197929 | None:intergenic | 50.0% | |
| GGAAACTATGCTGTCTCTGG+AGG | + | chr3_2:58198067-58198086 | Msa0413720:CDS | 50.0% | |
| ! | GCTGTCTCTGGAGGCATAAA+AGG | + | chr3_2:58198076-58198095 | Msa0413720:CDS | 50.0% |
| GGAACCTGCAGTGTCAAGAT+TGG | + | chr3_2:58198267-58198286 | Msa0413720:CDS | 50.0% | |
| GCTTCCAATCTTGACACTGC+AGG | - | chr3_2:58198274-58198293 | None:intergenic | 50.0% | |
| GCAGGACATTGCTATGTGTG+TGG | + | chr3_2:58198739-58198758 | Msa0413720:three_prime_UTR | 50.0% | |
| GGTTGTGGAGAATGCGAGAG+TGG | - | chr3_2:58195160-58195179 | None:intergenic | 55.0% | |
| TGCGTTTCTCTTCCCTGGTC+AGG | + | chr3_2:58195370-58195389 | Msa0413720:CDS | 55.0% | |
| GGGTGCACAAGCTGTTGGAA+TGG | + | chr3_2:58195477-58195496 | Msa0413720:intron | 55.0% | |
| !! | ATTAGACGGGGCTGGCTACA+TGG | + | chr3_2:58196615-58196634 | Msa0413720:intron | 55.0% |
| AAGGTCTGGTGAGGAGGGAA+TGG | - | chr3_2:58196776-58196795 | None:intergenic | 55.0% | |
| ! | GGTCTAAGGTCTGGTGAGGA+GGG | - | chr3_2:58196781-58196800 | None:intergenic | 55.0% |
| ! | AGGTCTAAGGTCTGGTGAGG+AGG | - | chr3_2:58196782-58196801 | None:intergenic | 55.0% |
| ! | AGGAGGTCTAAGGTCTGGTG+AGG | - | chr3_2:58196785-58196804 | None:intergenic | 55.0% |
| ! | TACTGCTCTGGCGTTTGCTG+GGG | + | chr3_2:58197114-58197133 | Msa0413720:CDS | 55.0% |
| ACTAAGGGGTGAAGCCATGC+AGG | + | chr3_2:58197691-58197710 | Msa0413720:CDS | 55.0% | |
| ! | GGTGCCATGGTTAGTGTGGT+AGG | + | chr3_2:58197846-58197865 | Msa0413720:CDS | 55.0% |
| GGTAGGACTGGACTCAGAGA+AGG | + | chr3_2:58197863-58197882 | Msa0413720:CDS | 55.0% | |
| TGGCTGCATCACACAACTGC+TGG | - | chr3_2:58197890-58197909 | None:intergenic | 55.0% | |
| !! | GGAAGTGCCTGAAGCTGAGA+AGG | + | chr3_2:58197914-58197933 | Msa0413720:CDS | 55.0% |
| ! | TGCCTTTTCCTCATGGTGGC+AGG | + | chr3_2:58198204-58198223 | Msa0413720:intron | 55.0% |
| CACCTGCCACCATGAGGAAA+AGG | - | chr3_2:58198209-58198228 | None:intergenic | 55.0% | |
| TGAGCTACTTCGGGCACGTG+AGG | + | chr3_2:58197033-58197052 | Msa0413720:CDS | 60.0% | |
| GAGCTACTTCGGGCACGTGA+GGG | + | chr3_2:58197034-58197053 | Msa0413720:CDS | 60.0% | |
| ! | TGGCGTTTGCTGGGGCTTTC+AGG | + | chr3_2:58197122-58197141 | Msa0413720:CDS | 60.0% |
| CTACTTCGGGCACGTGAGGG+AGG | + | chr3_2:58197037-58197056 | Msa0413720:CDS | 65.0% | |
| !! | GGAAAGCGCCTGCAACAGCC+AGG | - | chr3_2:58198234-58198253 | None:intergenic | 65.0% |
| CAGGCGCACCTGCCACCATG+AGG | - | chr3_2:58198215-58198234 | None:intergenic | 70.0% | |
| CTCATGGTGGCAGGTGCGCC+TGG | + | chr3_2:58198213-58198232 | Msa0413720:intron | 70.0% | |
| CAGGTGCGCCTGGCTGTTGC+AGG | + | chr3_2:58198223-58198242 | Msa0413720:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 58195066 | 58199104 | 58195066 | ID=Msa0413720;Name=Msa0413720 |
| chr3_2 | mRNA | 58195066 | 58199104 | 58195066 | ID=Msa0413720-mRNA-1;Parent=Msa0413720;Name=Msa0413720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=74|1|1|1|1|1|10|373|380 |
| chr3_2 | exon | 58195066 | 58195391 | 58195066 | ID=Msa0413720-mRNA-1:exon:12077;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58195478 | 58195563 | 58195478 | ID=Msa0413720-mRNA-1:exon:12078;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58195653 | 58195719 | 58195653 | ID=Msa0413720-mRNA-1:exon:12079;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58197001 | 58197143 | 58197001 | ID=Msa0413720-mRNA-1:exon:12080;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58197664 | 58197712 | 58197664 | ID=Msa0413720-mRNA-1:exon:12081;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58197825 | 58197962 | 58197825 | ID=Msa0413720-mRNA-1:exon:12082;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58198067 | 58198147 | 58198067 | ID=Msa0413720-mRNA-1:exon:12083;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58198226 | 58198402 | 58198226 | ID=Msa0413720-mRNA-1:exon:12084;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58198481 | 58198567 | 58198481 | ID=Msa0413720-mRNA-1:exon:12085;Parent=Msa0413720-mRNA-1 |
| chr3_2 | exon | 58198669 | 58199104 | 58198669 | ID=Msa0413720-mRNA-1:exon:12086;Parent=Msa0413720-mRNA-1 |
| chr3_2 | five_prime_UTR | 58195066 | 58195139 | 58195066 | ID=Msa0413720-mRNA-1:five_prime_utr;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58195140 | 58195391 | 58195140 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58195478 | 58195563 | 58195478 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58195653 | 58195719 | 58195653 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58197001 | 58197143 | 58197001 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58197664 | 58197712 | 58197664 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58197825 | 58197962 | 58197825 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58198067 | 58198147 | 58198067 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58198226 | 58198402 | 58198226 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58198481 | 58198567 | 58198481 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | CDS | 58198669 | 58198731 | 58198669 | ID=Msa0413720-mRNA-1:cds;Parent=Msa0413720-mRNA-1 |
| chr3_2 | three_prime_UTR | 58198732 | 58199104 | 58198732 | ID=Msa0413720-mRNA-1:three_prime_utr;Parent=Msa0413720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
