Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505370 | XP_003599303.2 | 95.263 | 380 | 18 | 0 | 1 | 380 | 1 | 380 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505370 | sp|Q8R3F5|FABD_MOUSE | 39.672 | 305 | 174 | 4 | 77 | 373 | 61 | 363 | 7.12e-69 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505370 | G7J0N6 | 95.263 | 380 | 18 | 0 | 1 | 380 | 1 | 380 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0505370 | 0.807671 | 4.510901e-50 | -8.615850e-47 |
| Msa0016670 | Msa0505370 | 0.823503 | 1.337676e-53 | -8.615850e-47 |
| Msa0028060 | Msa0505370 | 0.800749 | 1.245494e-48 | -8.615850e-47 |
| Msa0032120 | Msa0505370 | 0.850826 | 1.320753e-60 | -8.615850e-47 |
| Msa0032400 | Msa0505370 | 0.837067 | 6.469438e-57 | -8.615850e-47 |
| Msa0048020 | Msa0505370 | 0.800237 | 1.583497e-48 | -8.615850e-47 |
| Msa0053110 | Msa0505370 | 0.803927 | 2.759092e-49 | -8.615850e-47 |
| Msa0063580 | Msa0505370 | 0.813950 | 1.974117e-51 | -8.615850e-47 |
| Msa0073820 | Msa0505370 | 0.812243 | 4.676999e-51 | -8.615850e-47 |
| Msa0090590 | Msa0505370 | 0.815564 | 8.665925e-52 | -8.615850e-47 |
| Msa0110970 | Msa0505370 | 0.809912 | 1.496509e-50 | -8.615850e-47 |
| Msa0122630 | Msa0505370 | 0.806622 | 7.523445e-50 | -8.615850e-47 |
| Msa0141430 | Msa0505370 | 0.804754 | 1.855968e-49 | -8.615850e-47 |
| Msa0183830 | Msa0505370 | 0.805313 | 1.417606e-49 | -8.615850e-47 |
| Msa0185700 | Msa0505370 | 0.841622 | 4.249723e-58 | -8.615850e-47 |
| Msa0365850 | Msa0505370 | 0.881141 | 3.070381e-70 | -8.615850e-47 |
| Msa0413720 | Msa0505370 | 0.997598 | 1.781455e-245 | -8.615850e-47 |
| Msa0422850 | Msa0505370 | 0.803671 | 3.119209e-49 | -8.615850e-47 |
| Msa0425940 | Msa0505370 | 0.845389 | 4.186956e-59 | -8.615850e-47 |
| Msa0426020 | Msa0505370 | 0.832369 | 9.833479e-56 | -8.615850e-47 |
| Msa0426160 | Msa0505370 | 0.857092 | 2.065441e-62 | -8.615850e-47 |
| Msa0450050 | Msa0505370 | 0.804791 | 1.823436e-49 | -8.615850e-47 |
| Msa0458770 | Msa0505370 | 0.809885 | 1.516704e-50 | -8.615850e-47 |
| Msa0467300 | Msa0505370 | 0.808651 | 2.789266e-50 | -8.615850e-47 |
| Msa0238890 | Msa0505370 | 0.819779 | 9.708920e-53 | -8.615850e-47 |
| Msa0239660 | Msa0505370 | 0.804061 | 2.588272e-49 | -8.615850e-47 |
| Msa0264870 | Msa0505370 | 0.818661 | 1.744576e-52 | -8.615850e-47 |
| Msa0277400 | Msa0505370 | 0.822141 | 2.776644e-53 | -8.615850e-47 |
| Msa0277630 | Msa0505370 | 0.809883 | 1.518062e-50 | -8.615850e-47 |
| Msa0277640 | Msa0505370 | 0.800715 | 1.265553e-48 | -8.615850e-47 |
| Msa0289890 | Msa0505370 | 0.809114 | 2.220194e-50 | -8.615850e-47 |
| Msa0322570 | Msa0505370 | 0.800137 | 1.659705e-48 | -8.615850e-47 |
| Msa0505370 | Msa0524160 | 0.806073 | 9.816715e-50 | -8.615850e-47 |
| Msa0505370 | Msa0527600 | 0.822718 | 2.039329e-53 | -8.615850e-47 |
| Msa0505370 | Msa0546840 | 0.813510 | 2.468344e-51 | -8.615850e-47 |
| Msa0505370 | Msa0563530 | 0.806780 | 6.964680e-50 | -8.615850e-47 |
| Msa0505370 | Msa0564030 | 0.822094 | 2.846586e-53 | -8.615850e-47 |
| Msa0505370 | Msa0574890 | 0.825329 | 4.973495e-54 | -8.615850e-47 |
| Msa0505370 | Msa0576690 | 0.807973 | 3.890483e-50 | -8.615850e-47 |
| Msa0505370 | Msa0629290 | 0.802034 | 6.795438e-49 | -8.615850e-47 |
| Msa0505370 | Msa0652400 | 0.825675 | 4.119613e-54 | -8.615850e-47 |
| Msa0505370 | Msa0654540 | 0.824419 | 8.154568e-54 | -8.615850e-47 |
| Msa0505370 | Msa0696620 | 0.805691 | 1.181313e-49 | -8.615850e-47 |
| Msa0505370 | Msa0746610 | 0.822596 | 2.176274e-53 | -8.615850e-47 |
| Msa0505370 | Msa0825020 | 0.858334 | 8.848832e-63 | -8.615850e-47 |
| Msa0505370 | Msa0864310 | 0.854317 | 1.333787e-61 | -8.615850e-47 |
| Msa0505370 | Msa0930780 | 0.817762 | 2.787659e-52 | -8.615850e-47 |
| Msa0505370 | Msa0969400 | 0.810736 | 9.936278e-51 | -8.615850e-47 |
| Msa0505370 | Msa0969700 | 0.809966 | 1.457307e-50 | -8.615850e-47 |
| Msa0505370 | Msa0982690 | 0.814102 | 1.828215e-51 | -8.615850e-47 |
| Msa0505370 | Msa1018050 | 0.810316 | 1.224874e-50 | -8.615850e-47 |
| Msa0505370 | Msa1018790 | 0.803770 | 2.975393e-49 | -8.615850e-47 |
| Msa0505370 | Msa1038050 | 0.801303 | 9.595616e-49 | -8.615850e-47 |
| Msa0505370 | Msa1055690 | 0.810599 | 1.064060e-50 | -8.615850e-47 |
| Msa0505370 | Msa1097640 | 0.802869 | 4.572348e-49 | -8.615850e-47 |
| Msa0505370 | Msa1165300 | 0.810316 | 1.224874e-50 | -8.615850e-47 |
| Msa0505370 | Msa1188940 | 0.814119 | 1.812148e-51 | -8.615850e-47 |
| Msa0505370 | Msa1226620 | 0.942433 | 7.250007e-102 | -8.615850e-47 |
| Msa0505370 | Msa1252190 | 0.800513 | 1.391091e-48 | -8.615850e-47 |
| Msa0505370 | Msa1284520 | 0.818130 | 2.301201e-52 | -8.615850e-47 |
| Msa0505370 | Msa1324000 | 0.826747 | 2.289755e-54 | -8.615850e-47 |
| Msa0505370 | Msa1351760 | 0.806304 | 8.779037e-50 | -8.615850e-47 |
| Msa0505370 | Msa1367340 | 0.802900 | 4.504987e-49 | -8.615850e-47 |
| Msa0505370 | Msa1379570 | 0.835463 | 1.653481e-56 | -8.615850e-47 |
| Msa0505370 | Msa1382310 | 0.809413 | 1.915992e-50 | -8.615850e-47 |
| Msa0505370 | Msa1389950 | 0.811187 | 7.935492e-51 | -8.615850e-47 |
| Msa0505370 | Msa1398480 | 0.848700 | 5.185395e-60 | -8.615850e-47 |
| Msa0505370 | Msa1429250 | 0.812528 | 4.051051e-51 | -8.615850e-47 |
| Msa0505370 | Msa1447230 | 0.804425 | 2.173444e-49 | -8.615850e-47 |
| Msa0505370 | Msa1454020 | 0.833447 | 5.305812e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505370 | MtrunA17_Chr3g0106261 | 95.263 | 380 | 18 | 0 | 1 | 380 | 1 | 380 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0505370 | AT2G30200.1 | 82.985 | 335 | 56 | 1 | 47 | 380 | 59 | 393 | 0.0 | 556 |
| Msa0505370 | AT2G30200.2 | 82.578 | 287 | 49 | 1 | 47 | 332 | 59 | 345 | 3.58e-168 | 474 |
Find 122 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCGTTTGCTGGGGCTTTC+AGG | 0.094720 | 3_4:+50830555 | Msa0505370:CDS |
| CAAGAAAGCCAATGAGATTT+TGG | 0.134267 | 3_4:+50828973 | Msa0505370:CDS |
| CTTCTTGATGTATGCATTAA+TGG | 0.181932 | 3_4:+50829093 | Msa0505370:CDS |
| GCATTCAAATGTTGGATTTA+TGG | 0.185585 | 3_4:-50828554 | None:intergenic |
| TTATTTCATCTAAAATTTAT+TGG | 0.214877 | 3_4:-50832463 | None:intergenic |
| TATACTGCTCTGGCGTTTGC+TGG | 0.229112 | 3_4:+50830545 | Msa0505370:CDS |
| CATTCAAATGTTGGATTTAT+GGG | 0.229579 | 3_4:-50828553 | None:intergenic |
| GTGGCGAAAACCCTAGATTT+AGG | 0.235244 | 3_4:-50828717 | None:intergenic |
| AATATCTTCTTTATTGTGTC+AGG | 0.273256 | 3_4:-50831803 | None:intergenic |
| CAGGTGCGCCTGGCTGTTGC+AGG | 0.273267 | 3_4:+50831656 | Msa0505370:intron |
| GTGATCTAACTTATTCAAAA+TGG | 0.282898 | 3_4:-50832360 | None:intergenic |
| CGTAAACTTTCTACCTTTCC+AGG | 0.283273 | 3_4:-50831992 | None:intergenic |
| CCTTACTGGACATAGGTAAT+TGG | 0.315959 | 3_4:-50831379 | None:intergenic |
| CTTTGAAGATGGACTGAAAT+TGG | 0.319783 | 3_4:+50831097 | Msa0505370:CDS |
| ACCACAATTTCCCTAAATCT+AGG | 0.322897 | 3_4:+50828706 | Msa0505370:CDS |
| TGCAATATTGTAGTTTGTAT+TGG | 0.335872 | 3_4:-50832198 | None:intergenic |
| AGCTTCAGGCACTTCCTGAT+TGG | 0.338484 | 3_4:-50831340 | None:intergenic |
| GCTGTCTCTGGAGGCATAAA+AGG | 0.342232 | 3_4:+50831509 | Msa0505370:CDS |
| ATCTGAACCTTCTCAGCTTC+AGG | 0.348175 | 3_4:-50831354 | None:intergenic |
| TGGAAATGACTGGTATTCTT+GGG | 0.360068 | 3_4:-50831754 | None:intergenic |
| CTCATGGTGGCAGGTGCGCC+TGG | 0.360470 | 3_4:+50831646 | Msa0505370:intron |
| TGCTGCTGTTGAGCTACTTC+GGG | 0.360693 | 3_4:+50830457 | Msa0505370:CDS |
| TTCTTGATGTATGCATTAAT+GGG | 0.361976 | 3_4:+50829094 | Msa0505370:CDS |
| TTGGAAATGACTGGTATTCT+TGG | 0.363800 | 3_4:-50831755 | None:intergenic |
| TGGACTCTTCAGGTTATTGC+TGG | 0.367068 | 3_4:+50832090 | Msa0505370:intron |
| TCGGAGCTTAAGAAGTTTGC+AGG | 0.367846 | 3_4:+50832154 | Msa0505370:exon |
| GCTGAAGAAAAGCTATGAAT+TGG | 0.370795 | 3_4:+50831967 | Msa0505370:CDS |
| ACTGTTGTTTCCCATTGAAC+AGG | 0.383548 | 3_4:-50831923 | None:intergenic |
| AATCAGCTACAGAAGCTTCA+TGG | 0.391257 | 3_4:-50828767 | None:intergenic |
| TGGCGAAAACCCTAGATTTA+GGG | 0.391319 | 3_4:-50828716 | None:intergenic |
| TTATTCAAAATGGAACCTAT+TGG | 0.401232 | 3_4:-50832350 | None:intergenic |
| CAGGTTCCATAAAACTAGTA+TGG | 0.401234 | 3_4:-50831685 | None:intergenic |
| TGCTGGAATTGTCAAAAGAA+TGG | 0.402849 | 3_4:+50832107 | Msa0505370:CDS |
| ATACTGCTCTGGCGTTTGCT+GGG | 0.405436 | 3_4:+50830546 | Msa0505370:CDS |
| TGCGTTTCTCTTCCCTGGTC+AGG | 0.406940 | 3_4:+50828803 | Msa0505370:CDS |
| GTTCGATGTGGGAAGAAGAT+AGG | 0.407548 | 3_4:-50828669 | None:intergenic |
| TGACACAATAAAGAAGATAT+TGG | 0.409601 | 3_4:+50831805 | Msa0505370:CDS |
| GAAATGTTGCATTCAAATGT+TGG | 0.410318 | 3_4:-50828562 | None:intergenic |
| AAAGAAGATATTGGCACAAC+AGG | 0.412880 | 3_4:+50831814 | Msa0505370:CDS |
| TTCGATGTGGGAAGAAGATA+GGG | 0.417089 | 3_4:-50828668 | None:intergenic |
| GTTTCATGTGGTTTGAGCTT+AGG | 0.423256 | 3_4:+50830518 | Msa0505370:CDS |
| TTGCTGCTGTTGAGCTACTT+CGG | 0.426896 | 3_4:+50830456 | Msa0505370:CDS |
| CAGCAAGACTTGTGACATAC+AGG | 0.430360 | 3_4:-50830439 | None:intergenic |
| CCCTAGATTTAGGGAAATTG+TGG | 0.431468 | 3_4:-50828707 | None:intergenic |
| GTTGTGTGATGCAGCCAATC+AGG | 0.434474 | 3_4:+50831326 | Msa0505370:CDS |
| TCCAATGCGTTTCTCTTCCC+TGG | 0.436188 | 3_4:+50828798 | Msa0505370:CDS |
| GACTGAAATTGGTGAAACTA+AGG | 0.439212 | 3_4:+50831108 | Msa0505370:CDS |
| AGGTTACTTACCCTGTTCAA+TGG | 0.439364 | 3_4:+50831912 | Msa0505370:intron |
| TGGCTGCATCACACAACTGC+TGG | 0.441780 | 3_4:-50831320 | None:intergenic |
| AGCCTTGAAAGACTTCGCTT+TGG | 0.442255 | 3_4:-50831549 | None:intergenic |
| AGAAGAAGACATTGTAGAGA+TGG | 0.442899 | 3_4:-50828625 | None:intergenic |
| CCACAATTTCCCTAAATCTA+GGG | 0.450894 | 3_4:+50828707 | Msa0505370:CDS |
| TTCAAAATGGAACCTATTGG+TGG | 0.458831 | 3_4:-50832347 | None:intergenic |
| GGAACCTGCAGTGTCAAGAT+TGG | 0.459211 | 3_4:+50831700 | Msa0505370:CDS |
| TAAATACCCCAAAATCTCAT+TGG | 0.463483 | 3_4:-50828981 | None:intergenic |
| TGTTGGTTGAAAATTTGAAA+TGG | 0.463497 | 3_4:+50832487 | Msa0505370:three_prime_UTR |
| GGTTACTTACCCTGTTCAAT+GGG | 0.466160 | 3_4:+50831913 | Msa0505370:intron |
| TAGGGAAACTATGCTGTCTC+TGG | 0.470485 | 3_4:+50831497 | Msa0505370:intron |
| GCTTCCAATCTTGACACTGC+AGG | 0.476548 | 3_4:-50831704 | None:intergenic |
| ATATCTTCTTTATTGTGTCA+GGG | 0.486151 | 3_4:-50831802 | None:intergenic |
| CTGAAGAAAAGCTATGAATT+GGG | 0.506499 | 3_4:+50831968 | Msa0505370:CDS |
| AGCCAAAGCGAAGTCTTTCA+AGG | 0.506804 | 3_4:+50831547 | Msa0505370:CDS |
| GGAAAGCGCCTGCAACAGCC+AGG | 0.507270 | 3_4:-50831664 | None:intergenic |
| CTATGAATTGGGACCTGGAA+AGG | 0.507524 | 3_4:+50831979 | Msa0505370:CDS |
| GGTGCACAAGCTGTTGGAAT+GGG | 0.510482 | 3_4:+50828911 | Msa0505370:CDS |
| CGATTTGTAAGCTTTGAAGA+TGG | 0.513263 | 3_4:+50831086 | Msa0505370:intron |
| TGCGGAAAATATACCTGACC+AGG | 0.515702 | 3_4:-50828816 | None:intergenic |
| CTTAGGAGAGTATACTGCTC+TGG | 0.517475 | 3_4:+50830535 | Msa0505370:CDS |
| GAATTCAACAGTTATCAGTC+AGG | 0.518626 | 3_4:+50829131 | Msa0505370:CDS |
| ACTAAGGGGTGAAGCCATGC+AGG | 0.520103 | 3_4:+50831124 | Msa0505370:CDS |
| AGATTGAGATCCAGTGGAAA+TGG | 0.524305 | 3_4:-50828739 | None:intergenic |
| GCATTTACGTTGGAAATGAC+TGG | 0.530559 | 3_4:-50831764 | None:intergenic |
| ATTGTGTCAGGGTCTGTATG+TGG | 0.531264 | 3_4:-50831791 | None:intergenic |
| TCTTGGGGTTCTAATGTCTG+TGG | 0.536650 | 3_4:-50831738 | None:intergenic |
| TGAGCTACTTCGGGCACGTG+AGG | 0.538884 | 3_4:+50830466 | Msa0505370:CDS |
| TGAGAGTGTGGGTTCGATGT+GGG | 0.541678 | 3_4:-50828680 | None:intergenic |
| GGAAGTGCCTGAAGCTGAGA+AGG | 0.545626 | 3_4:+50831347 | Msa0505370:CDS |
| GGAAATGACTGGTATTCTTG+GGG | 0.548400 | 3_4:-50831753 | None:intergenic |
| TACTGCTCTGGCGTTTGCTG+GGG | 0.549969 | 3_4:+50830547 | Msa0505370:CDS |
| TTGAAAATTTGAAATGGCAA+TGG | 0.553034 | 3_4:+50832493 | Msa0505370:three_prime_UTR |
| TTGAGAGTGTGGGTTCGATG+TGG | 0.553382 | 3_4:-50828681 | None:intergenic |
| AAAAGCTATGAATTGGGACC+TGG | 0.554297 | 3_4:+50831974 | Msa0505370:CDS |
| CATGGTTAGTGTGGTAGGAC+TGG | 0.554574 | 3_4:+50831284 | Msa0505370:CDS |
| GGTGCCATGGTTAGTGTGGT+AGG | 0.555350 | 3_4:+50831279 | Msa0505370:CDS |
| ACCAGGGAAGAGAAACGCAT+TGG | 0.557047 | 3_4:-50828799 | None:intergenic |
| GTGAAGACTCTTCTATCCAA+GGG | 0.563734 | 3_4:+50831944 | Msa0505370:CDS |
| TTGTACAAAACTGCAGCAGA+AGG | 0.572446 | 3_4:-50828953 | None:intergenic |
| CTGTTGTTTCCCATTGAACA+GGG | 0.572523 | 3_4:-50831922 | None:intergenic |
| GAGCTACTTCGGGCACGTGA+GGG | 0.576524 | 3_4:+50830467 | Msa0505370:CDS |
| GATTCTGTTGATGTTTCATG+TGG | 0.577223 | 3_4:+50830506 | Msa0505370:CDS |
| AGCTACAGAAGCTTCATGGA+TGG | 0.577351 | 3_4:-50828763 | None:intergenic |
| CTACTTCGGGCACGTGAGGG+AGG | 0.580356 | 3_4:+50830470 | Msa0505370:CDS |
| AGTGAAGACTCTTCTATCCA+AGG | 0.584582 | 3_4:+50831943 | Msa0505370:CDS |
| GCAGGACATTGCTATGTGTG+TGG | 0.585638 | 3_4:+50832172 | Msa0505370:three_prime_UTR |
| GGGTGCACAAGCTGTTGGAA+TGG | 0.590984 | 3_4:+50828910 | Msa0505370:intron |
| GAAGTCTTTCAAGGCTCGAA+TGG | 0.594481 | 3_4:+50831556 | Msa0505370:CDS |
| TCAAGAACCTTACTGGACAT+AGG | 0.602304 | 3_4:-50831386 | None:intergenic |
| TAAAGGTGCCATGGTTAGTG+TGG | 0.602685 | 3_4:+50831275 | Msa0505370:CDS |
| GATGGAAGATTGAGATCCAG+TGG | 0.603030 | 3_4:-50828745 | None:intergenic |
| TTGTAGGGTGCACAAGCTGT+TGG | 0.608275 | 3_4:+50828905 | Msa0505370:intron |
| GGTTGTGGAGAATGCGAGAG+TGG | 0.610867 | 3_4:-50828590 | None:intergenic |
| CATAAAAGGAATAGAAGTCG+TGG | 0.615412 | 3_4:+50831523 | Msa0505370:CDS |
| GATGCTGCTGATGCTACTAA+AGG | 0.624615 | 3_4:+50831258 | Msa0505370:CDS |
| AGACTTGTGACATACAGGGC+AGG | 0.626537 | 3_4:-50830434 | None:intergenic |
| TTGAGATCCAGTGGAAATGG+TGG | 0.628005 | 3_4:-50828736 | None:intergenic |
| GGAAACTATGCTGTCTCTGG+AGG | 0.631276 | 3_4:+50831500 | Msa0505370:CDS |
| GGTAGGACTGGACTCAGAGA+AGG | 0.637373 | 3_4:+50831296 | Msa0505370:CDS |
| TGATGCTACTAAAGGTGCCA+TGG | 0.641755 | 3_4:+50831266 | Msa0505370:CDS |
| TCGATGTGGGAAGAAGATAG+GGG | 0.642629 | 3_4:-50828667 | None:intergenic |
| AGCAAGACTTGTGACATACA+GGG | 0.652472 | 3_4:-50830438 | None:intergenic |
| ACTACCACAGATTACCTGCA+TGG | 0.656968 | 3_4:-50831138 | None:intergenic |
| GCTAAATCAAAGAGAAACAC+GGG | 0.660284 | 3_4:+50832250 | Msa0505370:three_prime_UTR |
| CAGTCCTACCACACTAACCA+TGG | 0.663013 | 3_4:-50831283 | None:intergenic |
| TGTATGCATTAATGGGCCGA+AGG | 0.664486 | 3_4:+50829101 | Msa0505370:CDS |
| GGTGCTGATATTGAAAACAT+CGG | 0.665514 | 3_4:+50832135 | Msa0505370:CDS |
| AGCTAAATCAAAGAGAAACA+CGG | 0.666440 | 3_4:+50832249 | Msa0505370:three_prime_UTR |
| CTGAAATTGGTGAAACTAAG+GGG | 0.669315 | 3_4:+50831110 | Msa0505370:CDS |
| ATTGTCAAAAGAATGGACAA+AGG | 0.682335 | 3_4:+50832114 | Msa0505370:CDS |
| ACTGAAATTGGTGAAACTAA+GGG | 0.694892 | 3_4:+50831109 | Msa0505370:CDS |
| GCGGAAAATATACCTGACCA+GGG | 0.695587 | 3_4:-50828815 | None:intergenic |
| TGAAGACTCTTCTATCCAAG+GGG | 0.710603 | 3_4:+50831945 | Msa0505370:CDS |
| ATGTGGCAGAGCATTTACGT+TGG | 0.714429 | 3_4:-50831774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTCATCTAAAATTTAT+TGG | - | chr3_4:50832466-50832485 | None:intergenic | 10.0% |
| !!! | GTTTAAATTACAACTATTTT+TGG | + | chr3_4:50829017-50829036 | Msa0505370:intron | 15.0% |
| !!! | TTGTTTTGTATTATGTATTT+AGG | + | chr3_4:50829064-50829083 | Msa0505370:intron | 15.0% |
| !! | AAGTACAAAAATAATGAAAT+TGG | - | chr3_4:50829394-50829413 | None:intergenic | 15.0% |
| !! | ATAAAAAAAACTTCTACTAT+TGG | + | chr3_4:50829586-50829605 | Msa0505370:intron | 15.0% |
| !! | TTTATAAACAACAAATTTCA+TGG | - | chr3_4:50830366-50830385 | None:intergenic | 15.0% |
| !!! | ATGAAATTTGTTGTTTATAA+AGG | + | chr3_4:50830365-50830384 | Msa0505370:intron | 15.0% |
| !! | AAGAGAAAAATATGTAATTA+TGG | + | chr3_4:50830716-50830735 | Msa0505370:intron | 15.0% |
| !! | TTTAAAAAAAAACAACTCAA+AGG | - | chr3_4:50831016-50831035 | None:intergenic | 15.0% |
| !!! | AAATTGACTGTATTATATTT+TGG | + | chr3_4:50831474-50831493 | Msa0505370:intron | 15.0% |
| !!! | ATTTTAGATGAAATAATTGT+TGG | + | chr3_4:50832470-50832489 | Msa0505370:three_prime_UTR | 15.0% |
| !!! | CAATGAATTTTGATTGAAAT+TGG | + | chr3_4:50828855-50828874 | Msa0505370:intron | 20.0% |
| !!! | ATTTGATTTGATTTGATTGT+AGG | + | chr3_4:50828889-50828908 | Msa0505370:intron | 20.0% |
| !!! | TTTGATTTGATTTGATTGTA+GGG | + | chr3_4:50828890-50828909 | Msa0505370:intron | 20.0% |
| !!! | TCAAGATTGTTATTTTATTG+AGG | + | chr3_4:50829183-50829202 | Msa0505370:intron | 20.0% |
| !! | ACAAAAATAATGAAATTGGA+TGG | - | chr3_4:50829390-50829409 | None:intergenic | 20.0% |
| !! | GTTAACATTATCAATGAAAT+AGG | + | chr3_4:50830147-50830166 | Msa0505370:intron | 20.0% |
| !!! | TTTTTTGGACAAAAAATACA+TGG | - | chr3_4:50830611-50830630 | None:intergenic | 20.0% |
| !!! | AACATGGTAATCAATTTTTT+TGG | - | chr3_4:50830626-50830645 | None:intergenic | 20.0% |
| !! | ACAAATCGAATTAAATACAT+GGG | - | chr3_4:50831074-50831093 | None:intergenic | 20.0% |
| !! | TACAAATCGAATTAAATACA+TGG | - | chr3_4:50831075-50831094 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTAACTTCAAAAC+TGG | - | chr3_4:50832323-50832342 | None:intergenic | 20.0% |
| ! | CATTCAAATGTTGGATTTAT+GGG | - | chr3_4:50828556-50828575 | None:intergenic | 25.0% |
| ! | TAGAGATGGAAAAAGAATAA+GGG | - | chr3_4:50828614-50828633 | None:intergenic | 25.0% |
| !!! | ATTTTGATTGAAATTGGAAC+TGG | + | chr3_4:50828861-50828880 | Msa0505370:intron | 25.0% |
| !!! | TTTTGATTGAAATTGGAACT+GGG | + | chr3_4:50828862-50828881 | Msa0505370:intron | 25.0% |
| ! | TTCTTGATGTATGCATTAAT+GGG | + | chr3_4:50829094-50829113 | Msa0505370:CDS | 25.0% |
| !!! | AGATTGTTATTTTATTGAGG+TGG | + | chr3_4:50829186-50829205 | Msa0505370:intron | 25.0% |
| ! | TTCTTTATGATATGACGAAA+CGG | + | chr3_4:50829258-50829277 | Msa0505370:intron | 25.0% |
| ! | ATCTCAAATATTCCTAAACT+GGG | - | chr3_4:50829419-50829438 | None:intergenic | 25.0% |
| ! | TTTAATGTAACAGAAGTCTA+AGG | - | chr3_4:50829700-50829719 | None:intergenic | 25.0% |
| !!! | AATATGAGTTGGTTTGTAAT+CGG | + | chr3_4:50829861-50829880 | Msa0505370:intron | 25.0% |
| ! | TTGTTATAATAGTTCCAGTT+GGG | - | chr3_4:50830008-50830027 | None:intergenic | 25.0% |
| !!! | CTTTAAAATCATGATTACAG+AGG | - | chr3_4:50830238-50830257 | None:intergenic | 25.0% |
| !! | CTCTGTAATCATGATTTTAA+AGG | + | chr3_4:50830236-50830255 | Msa0505370:intron | 25.0% |
| ! | GGAATAAAAAGAGAATAAAG+AGG | + | chr3_4:50830257-50830276 | Msa0505370:intron | 25.0% |
| ! | AAATTACATATATGCCTCTA+TGG | - | chr3_4:50830391-50830410 | None:intergenic | 25.0% |
| ! | GTTGGGAAAAATATGAAAAA+CGG | - | chr3_4:50830677-50830696 | None:intergenic | 25.0% |
| ! | CAAATATTTCTTGAAACGTT+GGG | - | chr3_4:50830694-50830713 | None:intergenic | 25.0% |
| ! | TCAAATATTTCTTGAAACGT+TGG | - | chr3_4:50830695-50830714 | None:intergenic | 25.0% |
| ! | AAACTTTAAATGACTCATAC+TGG | - | chr3_4:50830818-50830837 | None:intergenic | 25.0% |
| ! | AGTCATTACAATCTAGTAAA+TGG | + | chr3_4:50830856-50830875 | Msa0505370:intron | 25.0% |
| ! | TGTAAATCAAGACAAAAAAG+TGG | - | chr3_4:50831042-50831061 | None:intergenic | 25.0% |
| !!! | TGACTGTATTATATTTTGGT+AGG | + | chr3_4:50831478-50831497 | Msa0505370:intron | 25.0% |
| !!! | GACTGTATTATATTTTGGTA+GGG | + | chr3_4:50831479-50831498 | Msa0505370:intron | 25.0% |
| ! | ATATCTTCTTTATTGTGTCA+GGG | - | chr3_4:50831805-50831824 | None:intergenic | 25.0% |
| ! | AATATCTTCTTTATTGTGTC+AGG | - | chr3_4:50831806-50831825 | None:intergenic | 25.0% |
| ! | TGACACAATAAAGAAGATAT+TGG | + | chr3_4:50831805-50831824 | Msa0505370:CDS | 25.0% |
| ! | TAGCAGAATTATAAAACTAG+AGG | - | chr3_4:50832056-50832075 | None:intergenic | 25.0% |
| !!! | CTGCTAACTTTTATTTTATC+TGG | + | chr3_4:50832070-50832089 | Msa0505370:intron | 25.0% |
| !! | TGCAATATTGTAGTTTGTAT+TGG | - | chr3_4:50832201-50832220 | None:intergenic | 25.0% |
| ! | AAAAAACTTAATCCACCAAT+AGG | + | chr3_4:50832335-50832354 | Msa0505370:three_prime_UTR | 25.0% |
| ! | TTATTCAAAATGGAACCTAT+TGG | - | chr3_4:50832353-50832372 | None:intergenic | 25.0% |
| ! | GTGATCTAACTTATTCAAAA+TGG | - | chr3_4:50832363-50832382 | None:intergenic | 25.0% |
| !! | TGTTGGTTGAAAATTTGAAA+TGG | + | chr3_4:50832487-50832506 | Msa0505370:three_prime_UTR | 25.0% |
| !! | TTGAAAATTTGAAATGGCAA+TGG | + | chr3_4:50832493-50832512 | Msa0505370:three_prime_UTR | 25.0% |
| !!! | GTTTTGAAGACAAAAACACT+TGG | + | chr3_4:50828504-50828523 | Msa0505370:five_prime_UTR | 30.0% |
| GCATTCAAATGTTGGATTTA+TGG | - | chr3_4:50828557-50828576 | None:intergenic | 30.0% | |
| GAAATGTTGCATTCAAATGT+TGG | - | chr3_4:50828565-50828584 | None:intergenic | 30.0% | |
| GTAGAGATGGAAAAAGAATA+AGG | - | chr3_4:50828615-50828634 | None:intergenic | 30.0% | |
| ! | AAGAAAGCCAATGAGATTTT+GGG | + | chr3_4:50828974-50828993 | Msa0505370:CDS | 30.0% |
| TAAATACCCCAAAATCTCAT+TGG | - | chr3_4:50828984-50829003 | None:intergenic | 30.0% | |
| CTTCTTGATGTATGCATTAA+TGG | + | chr3_4:50829093-50829112 | Msa0505370:CDS | 30.0% | |
| !!! | TGTTATTTTATTGAGGTGGA+AGG | + | chr3_4:50829190-50829209 | Msa0505370:intron | 30.0% |
| !! | GTTATTTTATTGAGGTGGAA+GGG | + | chr3_4:50829191-50829210 | Msa0505370:intron | 30.0% |
| ! | TTAGTGTTATCGATTGTGAA+TGG | + | chr3_4:50829312-50829331 | Msa0505370:intron | 30.0% |
| TAATGAAATTGGATGGAATG+TGG | - | chr3_4:50829383-50829402 | None:intergenic | 30.0% | |
| TCTCAAATATTCCTAAACTG+GGG | - | chr3_4:50829418-50829437 | None:intergenic | 30.0% | |
| CATCTCAAATATTCCTAAAC+TGG | - | chr3_4:50829420-50829439 | None:intergenic | 30.0% | |
| CAGTTTAGGAATATTTGAGA+TGG | + | chr3_4:50829418-50829437 | Msa0505370:intron | 30.0% | |
| TCCATTTACAAACAACAGAA+AGG | + | chr3_4:50829479-50829498 | Msa0505370:intron | 30.0% | |
| ! | TCCTTTCTGTTGTTTGTAAA+TGG | - | chr3_4:50829483-50829502 | None:intergenic | 30.0% |
| ATCATCTATACTTGATCAAC+AGG | - | chr3_4:50829808-50829827 | None:intergenic | 30.0% | |
| CAACTCATATTACACTGTTA+TGG | - | chr3_4:50829852-50829871 | None:intergenic | 30.0% | |
| CATAACAGTGTAATATGAGT+TGG | + | chr3_4:50829850-50829869 | Msa0505370:intron | 30.0% | |
| ACAATTAGAAGTTGAATCAC+TGG | + | chr3_4:50829911-50829930 | Msa0505370:intron | 30.0% | |
| GTTGTTATAATAGTTCCAGT+TGG | - | chr3_4:50830009-50830028 | None:intergenic | 30.0% | |
| ! | CCAAGCCTTTTAATATTAGA+CGG | + | chr3_4:50830034-50830053 | Msa0505370:intron | 30.0% |
| ! | CAAGCCTTTTAATATTAGAC+GGG | + | chr3_4:50830035-50830054 | Msa0505370:intron | 30.0% |
| ! | AAGCCTTTTAATATTAGACG+GGG | + | chr3_4:50830036-50830055 | Msa0505370:intron | 30.0% |
| AGATAAATGCTCTCTTATCA+GGG | - | chr3_4:50830093-50830112 | None:intergenic | 30.0% | |
| TAAAATCATGATTACAGAGG+AGG | - | chr3_4:50830235-50830254 | None:intergenic | 30.0% | |
| TATGCATTCTAGTGTAGAAA+AGG | - | chr3_4:50830311-50830330 | None:intergenic | 30.0% | |
| ATATGTAATTATGGCGTATG+TGG | + | chr3_4:50830725-50830744 | Msa0505370:intron | 30.0% | |
| AATTCTACTGTCATGGTAAA+AGG | - | chr3_4:50830751-50830770 | None:intergenic | 30.0% | |
| TTTACCATGACAGTAGAATT+AGG | + | chr3_4:50830751-50830770 | Msa0505370:intron | 30.0% | |
| ! | TTTTCCTAATTCTACTGTCA+TGG | - | chr3_4:50830758-50830777 | None:intergenic | 30.0% |
| ATTCCATCTATGAGAAGTTT+AGG | + | chr3_4:50830895-50830914 | Msa0505370:intron | 30.0% | |
| ACTGAAATTGGTGAAACTAA+GGG | + | chr3_4:50831109-50831128 | Msa0505370:CDS | 30.0% | |
| ! | TAGAAACAGAATTTTGCCTA+AGG | - | chr3_4:50831430-50831449 | None:intergenic | 30.0% |
| AATTGCACTTCTAATGCAAT+TGG | + | chr3_4:50831888-50831907 | Msa0505370:intron | 30.0% | |
| CTGAAGAAAAGCTATGAATT+GGG | + | chr3_4:50831968-50831987 | Msa0505370:CDS | 30.0% | |
| !! | TTATTTTATCTGGACTCTTC+AGG | + | chr3_4:50832080-50832099 | Msa0505370:intron | 30.0% |
| ATTGTCAAAAGAATGGACAA+AGG | + | chr3_4:50832114-50832133 | Msa0505370:CDS | 30.0% | |
| AGCTAAATCAAAGAGAAACA+CGG | + | chr3_4:50832249-50832268 | Msa0505370:three_prime_UTR | 30.0% | |
| TGGAAAAAGAATAAGGGTTG+TGG | - | chr3_4:50828608-50828627 | None:intergenic | 35.0% | |
| AGAAGAAGACATTGTAGAGA+TGG | - | chr3_4:50828628-50828647 | None:intergenic | 35.0% | |
| AAGAAGATAGGGGAAAAAGT+AGG | - | chr3_4:50828660-50828679 | None:intergenic | 35.0% | |
| !! | ATTGTGGTTTTTGAGAGTGT+GGG | - | chr3_4:50828694-50828713 | None:intergenic | 35.0% |
| !! | AATTGTGGTTTTTGAGAGTG+TGG | - | chr3_4:50828695-50828714 | None:intergenic | 35.0% |
| ACCACAATTTCCCTAAATCT+AGG | + | chr3_4:50828706-50828725 | Msa0505370:CDS | 35.0% | |
| CCACAATTTCCCTAAATCTA+GGG | + | chr3_4:50828707-50828726 | Msa0505370:CDS | 35.0% | |
| TGTTTATTCGCAATGCAATG+CGG | - | chr3_4:50828837-50828856 | None:intergenic | 35.0% | |
| ! | CAAGAAAGCCAATGAGATTT+TGG | + | chr3_4:50828973-50828992 | Msa0505370:CDS | 35.0% |
| ! | AGAAAGCCAATGAGATTTTG+GGG | + | chr3_4:50828975-50828994 | Msa0505370:CDS | 35.0% |
| ! | GTTGAATTCAGCTTTTCCTT+CGG | - | chr3_4:50829120-50829139 | None:intergenic | 35.0% |
| GAATTCAACAGTTATCAGTC+AGG | + | chr3_4:50829131-50829150 | Msa0505370:CDS | 35.0% | |
| AGAAAGCAAAGAATCTGCAA+TGG | + | chr3_4:50829336-50829355 | Msa0505370:intron | 35.0% | |
| ! | TTTTGTACTTTCCCCAGTTT+AGG | + | chr3_4:50829404-50829423 | Msa0505370:intron | 35.0% |
| CTGCATGATGAAAAAATCAG+TGG | - | chr3_4:50829458-50829477 | None:intergenic | 35.0% | |
| ATAACATATCCTCAGTGTGT+TGG | + | chr3_4:50829532-50829551 | Msa0505370:intron | 35.0% | |
| ACTCTCAAGTCTCAAATTTC+TGG | - | chr3_4:50829773-50829792 | None:intergenic | 35.0% | |
| GCTATTATATTTCACCCAAC+TGG | + | chr3_4:50829991-50830010 | Msa0505370:intron | 35.0% | |
| CCGTCTAATATTAAAAGGCT+TGG | - | chr3_4:50830037-50830056 | None:intergenic | 35.0% | |
| GAGATAAATGCTCTCTTATC+AGG | - | chr3_4:50830094-50830113 | None:intergenic | 35.0% | |
| GTTGTTTATAAAGGCCATAG+AGG | + | chr3_4:50830374-50830393 | Msa0505370:intron | 35.0% | |
| GATTCTGTTGATGTTTCATG+TGG | + | chr3_4:50830506-50830525 | Msa0505370:CDS | 35.0% | |
| GAGAAGCAGTAGAAAAAACA+TGG | - | chr3_4:50830642-50830661 | None:intergenic | 35.0% | |
| TGAAAAACGGAGACAATGAA+AGG | - | chr3_4:50830664-50830683 | None:intergenic | 35.0% | |
| GTAGAATTAGGAAAACCAAG+TGG | + | chr3_4:50830763-50830782 | Msa0505370:intron | 35.0% | |
| TATGTTAAGTGACCCAACTA+CGG | + | chr3_4:50830787-50830806 | Msa0505370:intron | 35.0% | |
| TTTATGTGCAAAACCACACA+GGG | - | chr3_4:50830976-50830995 | None:intergenic | 35.0% | |
| ATTTATGTGCAAAACCACAC+AGG | - | chr3_4:50830977-50830996 | None:intergenic | 35.0% | |
| !! | GTGTGGTTTTGCACATAAAT+TGG | + | chr3_4:50830977-50830996 | Msa0505370:intron | 35.0% |
| !! | CGATTTGTAAGCTTTGAAGA+TGG | + | chr3_4:50831086-50831105 | Msa0505370:intron | 35.0% |
| !! | CTTTGAAGATGGACTGAAAT+TGG | + | chr3_4:50831097-50831116 | Msa0505370:CDS | 35.0% |
| GACTGAAATTGGTGAAACTA+AGG | + | chr3_4:50831108-50831127 | Msa0505370:CDS | 35.0% | |
| CTGAAATTGGTGAAACTAAG+GGG | + | chr3_4:50831110-50831129 | Msa0505370:CDS | 35.0% | |
| GTAACCATTGTTCTTTATCC+AGG | + | chr3_4:50831236-50831255 | Msa0505370:intron | 35.0% | |
| !!! | ATCTGGCTTTTAACAACCTT+AGG | + | chr3_4:50831411-50831430 | Msa0505370:intron | 35.0% |
| CATAAAAGGAATAGAAGTCG+TGG | + | chr3_4:50831523-50831542 | Msa0505370:CDS | 35.0% | |
| CATTATTACTTTGCGAAAGG+TGG | - | chr3_4:50831619-50831638 | None:intergenic | 35.0% | |
| AGGCATTATTACTTTGCGAA+AGG | - | chr3_4:50831622-50831641 | None:intergenic | 35.0% | |
| ! | GTAATAATGCCTTTTCCTCA+TGG | + | chr3_4:50831630-50831649 | Msa0505370:intron | 35.0% |
| !!! | CGCTTTCCATACTAGTTTTA+TGG | + | chr3_4:50831679-50831698 | Msa0505370:CDS | 35.0% |
| CAGGTTCCATAAAACTAGTA+TGG | - | chr3_4:50831688-50831707 | None:intergenic | 35.0% | |
| TGGAAATGACTGGTATTCTT+GGG | - | chr3_4:50831757-50831776 | None:intergenic | 35.0% | |
| TTGGAAATGACTGGTATTCT+TGG | - | chr3_4:50831758-50831777 | None:intergenic | 35.0% | |
| AAAGAAGATATTGGCACAAC+AGG | + | chr3_4:50831814-50831833 | Msa0505370:CDS | 35.0% | |
| TCCAATGCAAAAGACATAAG+TGG | + | chr3_4:50831860-50831879 | Msa0505370:intron | 35.0% | |
| ! | ACCACTTATGTCTTTTGCAT+TGG | - | chr3_4:50831864-50831883 | None:intergenic | 35.0% |
| GCTGAAGAAAAGCTATGAAT+TGG | + | chr3_4:50831967-50831986 | Msa0505370:CDS | 35.0% | |
| TTCAAGAACACGGATAGTAT+AGG | - | chr3_4:50832021-50832040 | None:intergenic | 35.0% | |
| TCCATTGAGATTCAAGAACA+CGG | - | chr3_4:50832031-50832050 | None:intergenic | 35.0% | |
| TGCTGGAATTGTCAAAAGAA+TGG | + | chr3_4:50832107-50832126 | Msa0505370:CDS | 35.0% | |
| !! | GGTGCTGATATTGAAAACAT+CGG | + | chr3_4:50832135-50832154 | Msa0505370:CDS | 35.0% |
| ! | CACACATTTTCTCGTGAAAA+AGG | - | chr3_4:50832227-50832246 | None:intergenic | 35.0% |
| GCTAAATCAAAGAGAAACAC+GGG | + | chr3_4:50832250-50832269 | Msa0505370:three_prime_UTR | 35.0% | |
| TTCAAAATGGAACCTATTGG+TGG | - | chr3_4:50832350-50832369 | None:intergenic | 35.0% | |
| !!! | TTTTGTTACAGTGATGACGG+AGG | - | chr3_4:50828533-50828552 | None:intergenic | 40.0% |
| !!! | GGGTTTTGTTACAGTGATGA+CGG | - | chr3_4:50828536-50828555 | None:intergenic | 40.0% |
| TTCGATGTGGGAAGAAGATA+GGG | - | chr3_4:50828671-50828690 | None:intergenic | 40.0% | |
| CCCTAGATTTAGGGAAATTG+TGG | - | chr3_4:50828710-50828729 | None:intergenic | 40.0% | |
| TGGCGAAAACCCTAGATTTA+GGG | - | chr3_4:50828719-50828738 | None:intergenic | 40.0% | |
| AGATTGAGATCCAGTGGAAA+TGG | - | chr3_4:50828742-50828761 | None:intergenic | 40.0% | |
| AATCAGCTACAGAAGCTTCA+TGG | - | chr3_4:50828770-50828789 | None:intergenic | 40.0% | |
| TTGTACAAAACTGCAGCAGA+AGG | - | chr3_4:50828956-50828975 | None:intergenic | 40.0% | |
| ! | ATTTTATTGAGGTGGAAGGG+TGG | + | chr3_4:50829194-50829213 | Msa0505370:intron | 40.0% |
| AAGGGTGGAGTGAAATTTAG+TGG | + | chr3_4:50829209-50829228 | Msa0505370:intron | 40.0% | |
| TGACGAAACGGCATGAAATT+AGG | + | chr3_4:50829270-50829289 | Msa0505370:intron | 40.0% | |
| ATCATTCATCCAACACACTG+AGG | - | chr3_4:50829544-50829563 | None:intergenic | 40.0% | |
| GAATCACTGGAAATCACTTC+TGG | + | chr3_4:50829924-50829943 | Msa0505370:intron | 40.0% | |
| CAGCCCCGTCTAATATTAAA+AGG | - | chr3_4:50830042-50830061 | None:intergenic | 40.0% | |
| ! | CTTTTAATATTAGACGGGGC+TGG | + | chr3_4:50830040-50830059 | Msa0505370:intron | 40.0% |
| ATGATTACAGAGGAGGTCTA+AGG | - | chr3_4:50830228-50830247 | None:intergenic | 40.0% | |
| AGCAAGACTTGTGACATACA+GGG | - | chr3_4:50830441-50830460 | None:intergenic | 40.0% | |
| GTTTCATGTGGTTTGAGCTT+AGG | + | chr3_4:50830518-50830537 | Msa0505370:CDS | 40.0% | |
| GGTCACTTAACATATCCACT+TGG | - | chr3_4:50830781-50830800 | None:intergenic | 40.0% | |
| ATGTTAAGTGACCCAACTAC+GGG | + | chr3_4:50830788-50830807 | Msa0505370:intron | 40.0% | |
| AGGCCTAAACTTCTCATAGA+TGG | - | chr3_4:50830901-50830920 | None:intergenic | 40.0% | |
| CTGACAAGCTGAAAACAAAC+AGG | - | chr3_4:50830921-50830940 | None:intergenic | 40.0% | |
| GCATCCTGGATAAAGAACAA+TGG | - | chr3_4:50831243-50831262 | None:intergenic | 40.0% | |
| CCTTACTGGACATAGGTAAT+TGG | - | chr3_4:50831382-50831401 | None:intergenic | 40.0% | |
| CCAATTACCTATGTCCAGTA+AGG | + | chr3_4:50831379-50831398 | Msa0505370:intron | 40.0% | |
| TCAAGAACCTTACTGGACAT+AGG | - | chr3_4:50831389-50831408 | None:intergenic | 40.0% | |
| TATGTCCAGTAAGGTTCTTG+AGG | + | chr3_4:50831388-50831407 | Msa0505370:intron | 40.0% | |
| ! | ATAATGCCTTTTCCTCATGG+TGG | + | chr3_4:50831633-50831652 | Msa0505370:intron | 40.0% |
| GGAAATGACTGGTATTCTTG+GGG | - | chr3_4:50831756-50831775 | None:intergenic | 40.0% | |
| GCATTTACGTTGGAAATGAC+TGG | - | chr3_4:50831767-50831786 | None:intergenic | 40.0% | |
| AGGTTACTTACCCTGTTCAA+TGG | + | chr3_4:50831912-50831931 | Msa0505370:intron | 40.0% | |
| GGTTACTTACCCTGTTCAAT+GGG | + | chr3_4:50831913-50831932 | Msa0505370:intron | 40.0% | |
| !! | CTGTTGTTTCCCATTGAACA+GGG | - | chr3_4:50831925-50831944 | None:intergenic | 40.0% |
| !! | ACTGTTGTTTCCCATTGAAC+AGG | - | chr3_4:50831926-50831945 | None:intergenic | 40.0% |
| AGTGAAGACTCTTCTATCCA+AGG | + | chr3_4:50831943-50831962 | Msa0505370:CDS | 40.0% | |
| GTGAAGACTCTTCTATCCAA+GGG | + | chr3_4:50831944-50831963 | Msa0505370:CDS | 40.0% | |
| TGAAGACTCTTCTATCCAAG+GGG | + | chr3_4:50831945-50831964 | Msa0505370:CDS | 40.0% | |
| AAAAGCTATGAATTGGGACC+TGG | + | chr3_4:50831974-50831993 | Msa0505370:CDS | 40.0% | |
| CGTAAACTTTCTACCTTTCC+AGG | - | chr3_4:50831995-50832014 | None:intergenic | 40.0% | |
| TCCGTGTTCTTGAATCTCAA+TGG | + | chr3_4:50832027-50832046 | Msa0505370:intron | 40.0% | |
| TCGATGTGGGAAGAAGATAG+GGG | - | chr3_4:50828670-50828689 | None:intergenic | 45.0% | |
| GTTCGATGTGGGAAGAAGAT+AGG | - | chr3_4:50828672-50828691 | None:intergenic | 45.0% | |
| GTGGCGAAAACCCTAGATTT+AGG | - | chr3_4:50828720-50828739 | None:intergenic | 45.0% | |
| TTGAGATCCAGTGGAAATGG+TGG | - | chr3_4:50828739-50828758 | None:intergenic | 45.0% | |
| GATGGAAGATTGAGATCCAG+TGG | - | chr3_4:50828748-50828767 | None:intergenic | 45.0% | |
| AGCTACAGAAGCTTCATGGA+TGG | - | chr3_4:50828766-50828785 | None:intergenic | 45.0% | |
| GCGGAAAATATACCTGACCA+GGG | - | chr3_4:50828818-50828837 | None:intergenic | 45.0% | |
| TGCGGAAAATATACCTGACC+AGG | - | chr3_4:50828819-50828838 | None:intergenic | 45.0% | |
| ! | TGTATGCATTAATGGGCCGA+AGG | + | chr3_4:50829101-50829120 | Msa0505370:CDS | 45.0% |
| CGAAACGGCATGAAATTAGG+TGG | + | chr3_4:50829273-50829292 | Msa0505370:intron | 45.0% | |
| ATTGGATGGAATGTGGTGCA+GGG | - | chr3_4:50829376-50829395 | None:intergenic | 45.0% | |
| AATTGGATGGAATGTGGTGC+AGG | - | chr3_4:50829377-50829396 | None:intergenic | 45.0% | |
| TCACTGGAAATCACTTCTGG+TGG | + | chr3_4:50829927-50829946 | Msa0505370:intron | 45.0% | |
| GGCTGAAGCAGAGAATTAGA+TGG | - | chr3_4:50830416-50830435 | None:intergenic | 45.0% | |
| CAGCAAGACTTGTGACATAC+AGG | - | chr3_4:50830442-50830461 | None:intergenic | 45.0% | |
| TTGCTGCTGTTGAGCTACTT+CGG | + | chr3_4:50830456-50830475 | Msa0505370:CDS | 45.0% | |
| ! | CTTAGGAGAGTATACTGCTC+TGG | + | chr3_4:50830535-50830554 | Msa0505370:CDS | 45.0% |
| TGTTAAGTGACCCAACTACG+GGG | + | chr3_4:50830789-50830808 | Msa0505370:intron | 45.0% | |
| ATACTGGAAACCCCGTAGTT+GGG | - | chr3_4:50830802-50830821 | None:intergenic | 45.0% | |
| GCTTGTCAGCTTGTAGCATA+TGG | + | chr3_4:50830932-50830951 | Msa0505370:intron | 45.0% | |
| !! | GAAGAAGTATCTTCCCTGTG+TGG | + | chr3_4:50830960-50830979 | Msa0505370:intron | 45.0% |
| ACTACCACAGATTACCTGCA+TGG | - | chr3_4:50831141-50831160 | None:intergenic | 45.0% | |
| GATGCTGCTGATGCTACTAA+AGG | + | chr3_4:50831258-50831277 | Msa0505370:CDS | 45.0% | |
| !! | TGATGCTACTAAAGGTGCCA+TGG | + | chr3_4:50831266-50831285 | Msa0505370:CDS | 45.0% |
| !! | TAAAGGTGCCATGGTTAGTG+TGG | + | chr3_4:50831275-50831294 | Msa0505370:CDS | 45.0% |
| ATCTGAACCTTCTCAGCTTC+AGG | - | chr3_4:50831357-50831376 | None:intergenic | 45.0% | |
| CAGATCCTCAAGAACCTTAC+TGG | - | chr3_4:50831396-50831415 | None:intergenic | 45.0% | |
| CAGTAAGGTTCTTGAGGATC+TGG | + | chr3_4:50831394-50831413 | Msa0505370:intron | 45.0% | |
| TAGGGAAACTATGCTGTCTC+TGG | + | chr3_4:50831497-50831516 | Msa0505370:intron | 45.0% | |
| AGCCAAAGCGAAGTCTTTCA+AGG | + | chr3_4:50831547-50831566 | Msa0505370:CDS | 45.0% | |
| AGCCTTGAAAGACTTCGCTT+TGG | - | chr3_4:50831552-50831571 | None:intergenic | 45.0% | |
| GAAGTCTTTCAAGGCTCGAA+TGG | + | chr3_4:50831556-50831575 | Msa0505370:CDS | 45.0% | |
| ! | TCTTGGGGTTCTAATGTCTG+TGG | - | chr3_4:50831741-50831760 | None:intergenic | 45.0% |
| ! | ATGTGGCAGAGCATTTACGT+TGG | - | chr3_4:50831777-50831796 | None:intergenic | 45.0% |
| ATTGTGTCAGGGTCTGTATG+TGG | - | chr3_4:50831794-50831813 | None:intergenic | 45.0% | |
| TATTGGCACAACAGGTATGC+AGG | + | chr3_4:50831822-50831841 | Msa0505370:intron | 45.0% | |
| GCACTTCTAATGCAATTGGC+AGG | + | chr3_4:50831892-50831911 | Msa0505370:intron | 45.0% | |
| ! | ATAGCTTTTCTTCAGCCCCT+TGG | - | chr3_4:50831963-50831982 | None:intergenic | 45.0% |
| CTATGAATTGGGACCTGGAA+AGG | + | chr3_4:50831979-50831998 | Msa0505370:CDS | 45.0% | |
| ! | TGGACTCTTCAGGTTATTGC+TGG | + | chr3_4:50832090-50832109 | Msa0505370:intron | 45.0% |
| TCGGAGCTTAAGAAGTTTGC+AGG | + | chr3_4:50832154-50832173 | Msa0505370:exon | 45.0% | |
| ! | TGAGAGTGTGGGTTCGATGT+GGG | - | chr3_4:50828683-50828702 | None:intergenic | 50.0% |
| ! | TTGAGAGTGTGGGTTCGATG+TGG | - | chr3_4:50828684-50828703 | None:intergenic | 50.0% |
| ! | GTTTTCGCCACCATTTCCAC+TGG | + | chr3_4:50828729-50828748 | Msa0505370:CDS | 50.0% |
| TCCAATGCGTTTCTCTTCCC+TGG | + | chr3_4:50828798-50828817 | Msa0505370:CDS | 50.0% | |
| ACCAGGGAAGAGAAACGCAT+TGG | - | chr3_4:50828802-50828821 | None:intergenic | 50.0% | |
| TTGTAGGGTGCACAAGCTGT+TGG | + | chr3_4:50828905-50828924 | Msa0505370:intron | 50.0% | |
| GGTGCACAAGCTGTTGGAAT+GGG | + | chr3_4:50828911-50828930 | Msa0505370:CDS | 50.0% | |
| GTGCTCAAGTGCAGACAATG+CGG | - | chr3_4:50830185-50830204 | None:intergenic | 50.0% | |
| ! | TACAGAGGAGGTCTAAGGTC+TGG | - | chr3_4:50830223-50830242 | None:intergenic | 50.0% |
| AGACTTGTGACATACAGGGC+AGG | - | chr3_4:50830437-50830456 | None:intergenic | 50.0% | |
| TGCTGCTGTTGAGCTACTTC+GGG | + | chr3_4:50830457-50830476 | Msa0505370:CDS | 50.0% | |
| TATACTGCTCTGGCGTTTGC+TGG | + | chr3_4:50830545-50830564 | Msa0505370:CDS | 50.0% | |
| ATACTGCTCTGGCGTTTGCT+GGG | + | chr3_4:50830546-50830565 | Msa0505370:CDS | 50.0% | |
| CATACTGGAAACCCCGTAGT+TGG | - | chr3_4:50830803-50830822 | None:intergenic | 50.0% | |
| GAAGCCATGCAGGTAATCTG+TGG | + | chr3_4:50831134-50831153 | Msa0505370:intron | 50.0% | |
| TAGTAGCATCAGCAGCATCC+TGG | - | chr3_4:50831257-50831276 | None:intergenic | 50.0% | |
| CAGTCCTACCACACTAACCA+TGG | - | chr3_4:50831286-50831305 | None:intergenic | 50.0% | |
| CATGGTTAGTGTGGTAGGAC+TGG | + | chr3_4:50831284-50831303 | Msa0505370:CDS | 50.0% | |
| GTTGTGTGATGCAGCCAATC+AGG | + | chr3_4:50831326-50831345 | Msa0505370:CDS | 50.0% | |
| AGCTTCAGGCACTTCCTGAT+TGG | - | chr3_4:50831343-50831362 | None:intergenic | 50.0% | |
| GGAAACTATGCTGTCTCTGG+AGG | + | chr3_4:50831500-50831519 | Msa0505370:CDS | 50.0% | |
| ! | GCTGTCTCTGGAGGCATAAA+AGG | + | chr3_4:50831509-50831528 | Msa0505370:CDS | 50.0% |
| GGAACCTGCAGTGTCAAGAT+TGG | + | chr3_4:50831700-50831719 | Msa0505370:CDS | 50.0% | |
| GCTTCCAATCTTGACACTGC+AGG | - | chr3_4:50831707-50831726 | None:intergenic | 50.0% | |
| GCAGGACATTGCTATGTGTG+TGG | + | chr3_4:50832172-50832191 | Msa0505370:three_prime_UTR | 50.0% | |
| GGTTGTGGAGAATGCGAGAG+TGG | - | chr3_4:50828593-50828612 | None:intergenic | 55.0% | |
| TGCGTTTCTCTTCCCTGGTC+AGG | + | chr3_4:50828803-50828822 | Msa0505370:CDS | 55.0% | |
| GGGTGCACAAGCTGTTGGAA+TGG | + | chr3_4:50828910-50828929 | Msa0505370:intron | 55.0% | |
| !! | ATTAGACGGGGCTGGCTACA+TGG | + | chr3_4:50830048-50830067 | Msa0505370:intron | 55.0% |
| AAGGTCTGGTGAGGAGGGAA+TGG | - | chr3_4:50830209-50830228 | None:intergenic | 55.0% | |
| ! | GGTCTAAGGTCTGGTGAGGA+GGG | - | chr3_4:50830214-50830233 | None:intergenic | 55.0% |
| ! | AGGTCTAAGGTCTGGTGAGG+AGG | - | chr3_4:50830215-50830234 | None:intergenic | 55.0% |
| ! | AGGAGGTCTAAGGTCTGGTG+AGG | - | chr3_4:50830218-50830237 | None:intergenic | 55.0% |
| ! | TACTGCTCTGGCGTTTGCTG+GGG | + | chr3_4:50830547-50830566 | Msa0505370:CDS | 55.0% |
| ACTAAGGGGTGAAGCCATGC+AGG | + | chr3_4:50831124-50831143 | Msa0505370:CDS | 55.0% | |
| ! | GGTGCCATGGTTAGTGTGGT+AGG | + | chr3_4:50831279-50831298 | Msa0505370:CDS | 55.0% |
| GGTAGGACTGGACTCAGAGA+AGG | + | chr3_4:50831296-50831315 | Msa0505370:CDS | 55.0% | |
| TGGCTGCATCACACAACTGC+TGG | - | chr3_4:50831323-50831342 | None:intergenic | 55.0% | |
| !! | GGAAGTGCCTGAAGCTGAGA+AGG | + | chr3_4:50831347-50831366 | Msa0505370:CDS | 55.0% |
| ! | TGCCTTTTCCTCATGGTGGC+AGG | + | chr3_4:50831637-50831656 | Msa0505370:intron | 55.0% |
| CACCTGCCACCATGAGGAAA+AGG | - | chr3_4:50831642-50831661 | None:intergenic | 55.0% | |
| TGAGCTACTTCGGGCACGTG+AGG | + | chr3_4:50830466-50830485 | Msa0505370:CDS | 60.0% | |
| GAGCTACTTCGGGCACGTGA+GGG | + | chr3_4:50830467-50830486 | Msa0505370:CDS | 60.0% | |
| ! | TGGCGTTTGCTGGGGCTTTC+AGG | + | chr3_4:50830555-50830574 | Msa0505370:CDS | 60.0% |
| CTACTTCGGGCACGTGAGGG+AGG | + | chr3_4:50830470-50830489 | Msa0505370:CDS | 65.0% | |
| !! | GGAAAGCGCCTGCAACAGCC+AGG | - | chr3_4:50831667-50831686 | None:intergenic | 65.0% |
| CAGGCGCACCTGCCACCATG+AGG | - | chr3_4:50831648-50831667 | None:intergenic | 70.0% | |
| CTCATGGTGGCAGGTGCGCC+TGG | + | chr3_4:50831646-50831665 | Msa0505370:intron | 70.0% | |
| CAGGTGCGCCTGGCTGTTGC+AGG | + | chr3_4:50831656-50831675 | Msa0505370:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 50828499 | 50832537 | 50828499 | ID=Msa0505370;Name=Msa0505370 |
| chr3_4 | mRNA | 50828499 | 50832537 | 50828499 | ID=Msa0505370-mRNA-1;Parent=Msa0505370;Name=Msa0505370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=74|1|1|1|1|1|10|373|380 |
| chr3_4 | exon | 50828499 | 50828824 | 50828499 | ID=Msa0505370-mRNA-1:exon:11032;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50828911 | 50828996 | 50828911 | ID=Msa0505370-mRNA-1:exon:11033;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50829086 | 50829152 | 50829086 | ID=Msa0505370-mRNA-1:exon:11034;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50830434 | 50830576 | 50830434 | ID=Msa0505370-mRNA-1:exon:11035;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50831097 | 50831145 | 50831097 | ID=Msa0505370-mRNA-1:exon:11036;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50831258 | 50831395 | 50831258 | ID=Msa0505370-mRNA-1:exon:11037;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50831500 | 50831580 | 50831500 | ID=Msa0505370-mRNA-1:exon:11038;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50831659 | 50831835 | 50831659 | ID=Msa0505370-mRNA-1:exon:11039;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50831914 | 50832000 | 50831914 | ID=Msa0505370-mRNA-1:exon:11040;Parent=Msa0505370-mRNA-1 |
| chr3_4 | exon | 50832102 | 50832537 | 50832102 | ID=Msa0505370-mRNA-1:exon:11041;Parent=Msa0505370-mRNA-1 |
| chr3_4 | five_prime_UTR | 50828499 | 50828572 | 50828499 | ID=Msa0505370-mRNA-1:five_prime_utr;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50828573 | 50828824 | 50828573 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50828911 | 50828996 | 50828911 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50829086 | 50829152 | 50829086 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50830434 | 50830576 | 50830434 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50831097 | 50831145 | 50831097 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50831258 | 50831395 | 50831258 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50831500 | 50831580 | 50831500 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50831659 | 50831835 | 50831659 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50831914 | 50832000 | 50831914 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | CDS | 50832102 | 50832164 | 50832102 | ID=Msa0505370-mRNA-1:cds;Parent=Msa0505370-mRNA-1 |
| chr3_4 | three_prime_UTR | 50832165 | 50832537 | 50832165 | ID=Msa0505370-mRNA-1:three_prime_utr;Parent=Msa0505370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
