AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459280 MtrunA17_Chr3g0107491 96.306 379 10 2 1 377 1 377 0.0 750
Msa0459280 MtrunA17_Chr5g0432701 71.512 344 64 6 34 377 49 358 7.90e-170 478
Msa0459280 MtrunA17_Chr3g0128781 46.000 350 136 11 36 377 7 311 5.62e-86 263
Msa0459280 MtrunA17_Chr2g0329551 53.992 263 89 9 36 278 72 322 1.26e-70 227
Msa0459280 MtrunA17_Chr6g0463571 45.614 285 117 14 34 309 26 281 7.62e-54 180
Msa0459280 MtrunA17_Chr4g0036071 45.122 246 86 4 77 274 213 457 3.64e-52 181
Msa0459280 MtrunA17_Chr1g0156051 40.385 260 102 6 63 269 220 479 1.55e-33 130
Msa0459280 MtrunA17_Chr2g0316551 46.316 95 51 0 175 269 206 300 1.85e-20 91.3
Msa0459280 MtrunA17_Chr2g0325131 47.312 93 49 0 177 269 191 283 1.51e-19 88.6
Msa0459280 MtrunA17_Chr4g0040891 41.379 116 57 1 177 281 194 309 6.67e-19 86.7
Msa0459280 MtrunA17_Chr1g0202051 35.185 162 91 3 113 274 74 221 1.83e-18 84.7
Msa0459280 MtrunA17_Chr8g0380611 41.935 93 49 1 177 269 234 321 6.70e-12 66.2
Msa0459280 MtrunA17_Chr2g0306581 63.265 49 18 0 165 213 1 49 7.32e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459280 AT2G40620.1 47.561 410 135 14 5 377 1 367 9.24e-100 300
Msa0459280 AT1G06850.1 64.929 211 63 3 156 366 127 326 6.63e-85 261
Msa0459280 AT2G31370.5 48.929 280 106 9 36 295 58 320 3.26e-68 220
Msa0459280 AT2G31370.2 49.466 281 103 10 36 295 58 320 5.02e-68 220
Msa0459280 AT2G31370.4 49.466 281 103 10 36 295 58 320 5.02e-68 220
Msa0459280 AT2G31370.1 49.466 281 103 10 36 295 58 320 5.02e-68 220
Msa0459280 AT2G31370.7 49.466 281 103 10 36 295 58 320 5.02e-68 220
Msa0459280 AT2G31370.3 49.466 281 103 10 36 295 58 320 5.02e-68 220
Msa0459280 AT2G31370.6 49.466 281 103 10 36 295 58 320 5.02e-68 220
Msa0459280 AT1G06070.1 50.192 261 104 7 36 285 73 318 2.13e-63 209
Msa0459280 AT4G38900.2 42.484 306 103 9 50 284 199 502 7.97e-51 178
Msa0459280 AT4G38900.3 42.484 306 103 9 50 284 199 502 7.97e-51 178
Msa0459280 AT4G38900.1 41.667 312 103 10 50 284 199 508 2.95e-48 172
Msa0459280 AT1G43700.1 55.882 170 64 3 139 297 146 315 5.67e-46 160
Msa0459280 AT2G21230.4 67.826 115 37 0 160 274 353 467 2.10e-42 155
Msa0459280 AT2G21230.1 67.826 115 37 0 160 274 353 467 2.10e-42 155
Msa0459280 AT1G06850.2 88.312 77 9 0 156 232 127 203 3.93e-41 145
Msa0459280 AT2G21230.3 63.636 121 38 1 160 274 353 473 2.29e-39 147
Msa0459280 AT2G21230.2 68.687 99 31 0 160 258 353 451 4.33e-36 137
Msa0459280 AT2G12900.1 41.346 104 60 1 169 272 109 211 3.42e-20 89.7
Msa0459280 AT2G42380.2 45.745 94 51 0 176 269 185 278 7.50e-20 89.7
Msa0459280 AT3G58120.1 46.237 93 50 0 177 269 202 294 7.98e-20 89.7
Msa0459280 AT2G13150.1 41.584 101 58 1 169 269 142 241 2.28e-17 81.6
Msa0459280 AT2G12940.1 39.423 104 62 1 168 271 140 242 6.07e-17 80.9
Msa0459280 AT2G42380.5 45.238 84 46 0 175 258 184 267 7.06e-17 80.5
Msa0459280 AT2G21235.1 34.028 144 63 2 177 288 359 502 2.48e-16 80.9
Msa0459280 AT3G58120.2 46.835 79 42 0 177 255 202 280 7.75e-16 77.4
Msa0459280 AT2G42380.1 40.426 94 45 1 176 269 185 267 2.02e-13 70.9
Msa0459280 AT1G58110.1 44.048 84 47 0 186 269 238 321 2.53e-12 68.2
Msa0459280 AT1G58110.2 44.048 84 47 0 186 269 238 321 2.53e-12 68.2

Find 161 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCTACTGACTTATTTA+TGG 0.105701 3_3:-55765265 Msa0459280:three_prime_UTR
ATTCTTGATTGTTTATTCTT+AGG 0.126299 3_3:-55765148 Msa0459280:three_prime_UTR
ACAAGGGTGCTTCCCCTATT+TGG 0.130555 3_3:+55765117 None:intergenic
CCCCTCTGAATCTTATAATA+TGG 0.191240 3_3:-55765585 Msa0459280:CDS
CATATTGAAGCGTGGCATTT+TGG 0.200017 3_3:-55765067 Msa0459280:three_prime_UTR
CAAGGGTGCTTCCCCTATTT+GGG 0.238340 3_3:+55765118 None:intergenic
CTTAGGGATGCTCCCCAAAT+AGG 0.245676 3_3:-55765131 Msa0459280:three_prime_UTR
AACATACAGTTTCCCCAATT+TGG 0.266105 3_3:-55765488 Msa0459280:CDS
TCCGGCACCGGCACCGGCAC+CGG 0.276532 3_3:+55767776 None:intergenic
GGAGGATCCGCCGCCGGTTA+AGG 0.280693 3_3:+55767920 None:intergenic
GCCGGCTCCGGCACCGGCAC+CGG 0.283795 3_3:+55767770 None:intergenic
GCCGGTGCCGGTGCCGGTGC+CGG 0.305017 3_3:-55767777 Msa0459280:CDS
GCCGGTGCCGGTGCCGGAGC+CGG 0.306418 3_3:-55767771 Msa0459280:CDS
CCGTCTCCCCGACGACATTA+TGG 0.308655 3_3:-55767961 Msa0459280:CDS
TTCTTGATTGTTTATTCTTA+GGG 0.310849 3_3:-55765147 Msa0459280:three_prime_UTR
CAAAGCTCAGCAAGTTTATC+AGG 0.313179 3_3:+55767597 None:intergenic
CGATCAGCTCGGTCGTTTGC+AGG 0.321109 3_3:-55765390 Msa0459280:CDS
TCCGGCGCCGGCTCCGGCAC+CGG 0.334386 3_3:+55767764 None:intergenic
AGCTGAGATTTGGTGAGAAT+TGG 0.342600 3_3:+55765424 None:intergenic
AGATGGGGAGTGACCAAATT+GGG 0.344045 3_3:+55765475 None:intergenic
TTAGGGATGCTCCCCAAATA+GGG 0.347174 3_3:-55765130 Msa0459280:three_prime_UTR
GTTTGTTGCAACTGATAATT+CGG 0.347347 3_3:+55765446 None:intergenic
TTTCGACGACGAATATGTTT+GGG 0.355754 3_3:-55767650 Msa0459280:CDS
GTCAGTAGGTAAAGGAGTTT+AGG 0.356324 3_3:+55765275 None:intergenic
CAGATGGGGAGTGACCAAAT+TGG 0.358510 3_3:+55765474 None:intergenic
GTCGTTATTCCCACTGGTTC+CGG 0.359162 3_3:+55767746 None:intergenic
CATCTTACATGTCCTTCAAT+TGG 0.360792 3_3:+55764903 None:intergenic
CTGATAAACTTGCTGAGCTT+TGG 0.365244 3_3:-55767596 Msa0459280:CDS
TGTTGTATTGTTCCAATTGA+AGG 0.367690 3_3:-55764915 Msa0459280:three_prime_UTR
ATTTCGACGACGAATATGTT+TGG 0.371354 3_3:-55767651 Msa0459280:CDS
CTCGTCGAGGCTGGCGGTGG+AGG 0.374419 3_3:+55767902 None:intergenic
CTATGTCTATGCCTCGTTCT+CGG 0.375980 3_3:+55767693 None:intergenic
AATTCGAATCAGACCGGTTA+CGG 0.377222 3_3:-55767807 Msa0459280:CDS
CCACAACATTCAGGTCCTTC+AGG 0.383951 3_3:-55765518 Msa0459280:CDS
TGACCTGGTATAATGTCAAT+TGG 0.386653 3_3:+55766523 None:intergenic
CCCTCTGAATCTTATAATAT+GGG 0.390160 3_3:-55765584 Msa0459280:CDS
TACGGTAATTGCGCCGGTGC+CGG 0.393594 3_3:-55767789 Msa0459280:CDS
TTTGCAACATAGCTGAGATT+TGG 0.394152 3_3:+55765414 None:intergenic
GCCGGTGCCGGAGCCGGCGC+CGG 0.396069 3_3:-55767765 Msa0459280:CDS
AATTGCGCCGGTGCCGGTGC+CGG 0.404098 3_3:-55767783 Msa0459280:CDS
GGGGAGACGGTAGTTGATTT+CGG 0.404834 3_3:+55767974 None:intergenic
TCCCCTTCCGATCCCTTAAC+CGG 0.405073 3_3:-55767933 Msa0459280:CDS
ATGCACCAGATGCAATTTGC+AGG 0.409287 3_3:-55765560 Msa0459280:CDS
CTCTCCGTCGTTATTCCCAC+TGG 0.410355 3_3:+55767740 None:intergenic
GAGGATCCGCCGCCGGTTAA+GGG 0.411594 3_3:+55767921 None:intergenic
CGTTGATGAAGGAAGTTGAT+AGG 0.413861 3_3:-55765637 Msa0459280:CDS
CTATAGACAATTGAAGATAA+TGG 0.414062 3_3:+55765238 None:intergenic
ATTCCCACTGGTTCCGGCGC+CGG 0.419639 3_3:+55767752 None:intergenic
ACCGGCGCAATTACCGTAAC+CGG 0.425953 3_3:+55767794 None:intergenic
ACTGGTTCCGGCGCCGGCTC+CGG 0.440779 3_3:+55767758 None:intergenic
TTGAACGCGCAGCAGATTGC+CGG 0.443274 3_3:+55766625 None:intergenic
TGATAATTCGGCACGTCAGA+TGG 0.444587 3_3:+55765458 None:intergenic
GGTTTCGCCGGCGACGGTGG+TGG 0.449690 3_3:+55768022 None:intergenic
GGATCCGATCTCGTCGAGGC+TGG 0.450337 3_3:+55767893 None:intergenic
GAGTTGTAGCCTCTGTTTGA+AGG 0.453582 3_3:+55766553 None:intergenic
TTCATTCGCGGCAGCGTCAA+CGG 0.456932 3_3:-55768050 Msa0459280:CDS
AAATGAAATATTTAATGAAA+AGG 0.458073 3_3:+55765184 None:intergenic
GATCAGCTCGGTCGTTTGCA+GGG 0.472645 3_3:-55765389 Msa0459280:CDS
GAAAGGTCCATAATGTCGTC+GGG 0.474927 3_3:+55767954 None:intergenic
TTGATCCAAAACGTGCTAAG+AGG 0.475774 3_3:-55767569 Msa0459280:intron
ACTCTCACTTGCAGAGATTG+AGG 0.477229 3_3:+55765319 None:intergenic
GAATATGTTTGGGGAGATCA+TGG 0.479370 3_3:-55767640 Msa0459280:CDS
TTGACCCTGCAAATTGCATC+TGG 0.487667 3_3:+55765555 None:intergenic
TGAATTATCCAAAACAGAAA+AGG 0.488063 3_3:-55764882 Msa0459280:three_prime_UTR
GATCTCGTCGAGGCTGGCGG+TGG 0.494121 3_3:+55767899 None:intergenic
ATAAATAAGTCAGTAGGTAA+AGG 0.495325 3_3:+55765267 None:intergenic
GACGTTGGAAGAAGGTGCAT+TGG 0.495650 3_3:+55768073 None:intergenic
CTCTCACTTGCAGAGATTGA+GGG 0.495905 3_3:+55765320 None:intergenic
CCATAATGTCGTCGGGGAGA+CGG 0.497730 3_3:+55767961 None:intergenic
GGGCGCGACGGTGGTGAGAG+TGG 0.500229 3_3:+55768000 None:intergenic
ACGTTGGAAGAAGGTGCATT+GGG 0.501336 3_3:+55768074 None:intergenic
GATAGGCTTAAGATTGCTAC+CGG 0.505157 3_3:-55765620 Msa0459280:CDS
GCCGGTTAAGGGATCGGAAG+GGG 0.507894 3_3:+55767932 None:intergenic
AAGGGTGCTTCCCCTATTTG+GGG 0.509243 3_3:+55765119 None:intergenic
ACGGTAGTTGATTTCGGAGT+GGG 0.509526 3_3:+55767980 None:intergenic
GGTGAAGAAGAGATCATCTT+CGG 0.510116 3_3:+55767872 None:intergenic
CAAGCTCCGTCTGCAATCCA+TGG 0.511411 3_3:-55765900 Msa0459280:CDS
CGAATGAAGACGTTGGAAGA+AGG 0.511752 3_3:+55768065 None:intergenic
TTCAAGCTCTTGTATATAGC+GGG 0.514078 3_3:+55766590 None:intergenic
TCCGATCCCTTAACCGGCGG+CGG 0.520683 3_3:-55767927 Msa0459280:CDS
TCTTCCAACGTCTTCATTCG+CGG 0.520953 3_3:-55768062 Msa0459280:CDS
ACCGCCAGCCTCGACGAGAT+CGG 0.521810 3_3:-55767897 Msa0459280:CDS
AAGGTGTGCCTGCTGTTCCA+TGG 0.521823 3_3:+55765883 None:intergenic
GACCTGGTATAATGTCAATT+GGG 0.526658 3_3:+55766524 None:intergenic
GATAATTCGGCACGTCAGAT+GGG 0.528159 3_3:+55765459 None:intergenic
AGACATAGTTGTTCGGTGGA+TGG 0.528534 3_3:-55767678 Msa0459280:CDS
AGAGTGGGTTTCGCCGGCGA+CGG 0.528608 3_3:+55768016 None:intergenic
GGCGTCTCCACCACCGTCGC+CGG 0.529586 3_3:-55768029 Msa0459280:CDS
GGCGGTGGAGGATCCGCCGC+CGG 0.530555 3_3:+55767914 None:intergenic
AGAGGGGTTCATTGCCTCCC+CGG 0.534741 3_3:+55765601 None:intergenic
AATAACGACGGAGAGAAGAG+TGG 0.537621 3_3:-55767732 Msa0459280:CDS
ATCAGCTCGGTCGTTTGCAG+GGG 0.540633 3_3:-55765388 Msa0459280:CDS
TCCGCCGCCGGTTAAGGGAT+CGG 0.540686 3_3:+55767926 None:intergenic
TGTGCAGAATACTTGCAAAC+CGG 0.544736 3_3:-55766644 Msa0459280:intron
TCTTAATGATGCGTTGATGA+AGG 0.548957 3_3:-55765648 Msa0459280:CDS
GGCGCGACGGTGGTGAGAGT+GGG 0.551465 3_3:+55768001 None:intergenic
CCCATATTATAAGATTCAGA+GGG 0.552973 3_3:+55765584 None:intergenic
GACATGTAGTCATCTAATGA+AGG 0.554193 3_3:-55765211 Msa0459280:three_prime_UTR
CAGAGAAGAAGAAAATAGAA+TGG 0.555212 3_3:-55768114 Msa0459280:exon
TCTGCAATCCATGGAACAGC+AGG 0.555429 3_3:-55765891 Msa0459280:CDS
TCCCATATTATAAGATTCAG+AGG 0.556236 3_3:+55765583 None:intergenic
TGCGCGTTCAAAAGAGAGAA+AGG 0.557307 3_3:-55766613 Msa0459280:CDS
TTAAGGGATCGGAAGGGGAA+AGG 0.559188 3_3:+55767937 None:intergenic
AGTTGTAGCCTCTGTTTGAA+GGG 0.560730 3_3:+55766554 None:intergenic
GTGGGTTTCGCCGGCGACGG+TGG 0.561664 3_3:+55768019 None:intergenic
GGAGCCGGCGCCGGAACCAG+TGG 0.562454 3_3:-55767756 Msa0459280:CDS
ATTGGGGAAACTGTATGTTC+TGG 0.563965 3_3:+55765492 None:intergenic
TACATTGACGTTGAGAAGCT+CGG 0.568054 3_3:-55767849 Msa0459280:CDS
GAGGCATAGACATAGTTGTT+CGG 0.570398 3_3:-55767685 Msa0459280:CDS
TGCCCAATTGACATTATACC+AGG 0.573298 3_3:-55766526 Msa0459280:intron
GTGGTGAGAGTGGGTTTCGC+CGG 0.575040 3_3:+55768010 None:intergenic
TTTCGGAGTGGGCGCGACGG+TGG 0.577554 3_3:+55767991 None:intergenic
CCGCCGGTTAAGGGATCGGA+AGG 0.578667 3_3:+55767930 None:intergenic
TCCGATCTCGTCGAGGCTGG+CGG 0.580811 3_3:+55767896 None:intergenic
TATACAAGAGCTTGAACGCA+AGG 0.583220 3_3:-55766583 Msa0459280:CDS
ATGATACACATGACCAAAGA+GGG 0.583829 3_3:+55764971 None:intergenic
GGAAAGGTCCATAATGTCGT+CGG 0.585789 3_3:+55767953 None:intergenic
TTGCAGACGGAGCTTGAGCT+CGG 0.586207 3_3:+55765907 None:intergenic
ACCGGTTACGGTAATTGCGC+CGG 0.587005 3_3:-55767795 Msa0459280:CDS
AAGCTCGGTGGAGTAACAAA+CGG 0.588976 3_3:-55767834 Msa0459280:CDS
GAGCTTCTCAACGTCAATGT+AGG 0.589340 3_3:+55767851 None:intergenic
GGGCTTGACATCAGTAGCAA+AGG 0.594432 3_3:-55765368 Msa0459280:CDS
TCTCACTTGCAGAGATTGAG+GGG 0.600065 3_3:+55765321 None:intergenic
TTCGACGACGAATATGTTTG+GGG 0.609733 3_3:-55767649 Msa0459280:CDS
GCTGTTCCATGGATTGCAGA+CGG 0.612381 3_3:+55765894 None:intergenic
CCTTCCGATCCCTTAACCGG+CGG 0.614531 3_3:-55767930 Msa0459280:CDS
GAGCCGGCGCCGGAACCAGT+GGG 0.615830 3_3:-55767755 Msa0459280:CDS
GTTCAAGCTCTTGTATATAG+CGG 0.616568 3_3:+55766589 None:intergenic
AGTACCATAAATAAGTCAGT+AGG 0.616869 3_3:+55765261 None:intergenic
CAGCAGGCACACCTTCGAGA+TGG 0.617131 3_3:-55765875 Msa0459280:intron
GACGGTAGTTGATTTCGGAG+TGG 0.621392 3_3:+55767979 None:intergenic
TAGGGATGCTCCCCAAATAG+GGG 0.622078 3_3:-55765129 Msa0459280:three_prime_UTR
CTCACTTGCAGAGATTGAGG+GGG 0.623339 3_3:+55765322 None:intergenic
ATAGGCTTAAGATTGCTACC+GGG 0.624945 3_3:-55765619 Msa0459280:CDS
TGCACCAGATGCAATTTGCA+GGG 0.627466 3_3:-55765559 Msa0459280:CDS
GATGATACACATGACCAAAG+AGG 0.628268 3_3:+55764970 None:intergenic
GGTTCGAATTCGAATCAGAC+CGG 0.629064 3_3:-55767813 Msa0459280:CDS
ATAATTCGGCACGTCAGATG+GGG 0.631949 3_3:+55765460 None:intergenic
GATGGGGAGTGACCAAATTG+GGG 0.632562 3_3:+55765476 None:intergenic
AATAGTAGCTACCATCTCGA+AGG 0.635096 3_3:+55765864 None:intergenic
ATAACGACGGAGAGAAGAGT+GGG 0.635697 3_3:-55767731 Msa0459280:CDS
TGATTTCGGAGTGGGCGCGA+CGG 0.636065 3_3:+55767988 None:intergenic
TGTATGTTCTGGTGACCTGA+AGG 0.636109 3_3:+55765503 None:intergenic
GCATAGACATAGTTGTTCGG+TGG 0.636972 3_3:-55767682 Msa0459280:CDS
AGCTCAGCAAGTTTATCAGG+AGG 0.646900 3_3:+55767600 None:intergenic
CGCCGGTTAAGGGATCGGAA+GGG 0.652220 3_3:+55767931 None:intergenic
ATGTTACGACGCCGAGAACG+AGG 0.652742 3_3:-55767704 Msa0459280:CDS
TAGGCTTAAGATTGCTACCG+GGG 0.656168 3_3:-55765618 Msa0459280:CDS
CACGCAATCATATTGAAGCG+TGG 0.661649 3_3:-55765075 Msa0459280:three_prime_UTR
CACGCTTCAATATGATTGCG+TGG 0.667421 3_3:+55765076 None:intergenic
CTTCGGATCCGATCTCGTCG+AGG 0.668308 3_3:+55767889 None:intergenic
CCTGAAGGACCTGAATGTTG+TGG 0.674365 3_3:+55765518 None:intergenic
AAATAGGGGAAGCACCCTTG+TGG 0.674897 3_3:-55765115 Msa0459280:three_prime_UTR
GGTTCAGACCCTTCAAACAG+AGG 0.679114 3_3:-55766562 Msa0459280:CDS
GCTTAAGATTGCTACCGGGG+AGG 0.689095 3_3:-55765615 Msa0459280:CDS
GCTGCCGCGAATGAAGACGT+TGG 0.692550 3_3:+55768058 None:intergenic
CCATATTATAAGATTCAGAG+GGG 0.694210 3_3:+55765585 None:intergenic
AAAGGTCCATAATGTCGTCG+GGG 0.698449 3_3:+55767955 None:intergenic
GGAACCAGTGGGAATAACGA+CGG 0.719526 3_3:-55767744 Msa0459280:CDS
ATTGACGTTGAGAAGCTCGG+TGG 0.729210 3_3:-55767846 Msa0459280:CDS
ATGTTGCAAAACGATCAGCT+CGG 0.741818 3_3:-55765401 Msa0459280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAATATTTAATGAAA+AGG + chr3_3:55767890-55767909 None:intergenic 10.0%
!! AAAATACTAGTAATTTAGAT+TGG - chr3_3:55766972-55766991 Msa0459280:intron 15.0%
!!! TTTTAGAAAAGACTACAATT+TGG - chr3_3:55765856-55765875 Msa0459280:intron 20.0%
!!! ATATAGTTAGTATTGACATT+TGG - chr3_3:55765934-55765953 Msa0459280:CDS 20.0%
!!! ATGATGAATAAGAGTTTTTT+TGG + chr3_3:55766049-55766068 None:intergenic 20.0%
!! TGTTTCAGTTTATTCAAAAA+TGG + chr3_3:55766125-55766144 None:intergenic 20.0%
!!! AAGTTAGAATATTCCATTTT+TGG - chr3_3:55766144-55766163 Msa0459280:intron 20.0%
!!! TGATTTGAAATCTAGTTTTT+TGG - chr3_3:55766173-55766192 Msa0459280:intron 20.0%
!!! TTTCAAAAACTGAATTTTAG+TGG - chr3_3:55766354-55766373 Msa0459280:intron 20.0%
!! TACACAAACTTATATGTTAT+AGG - chr3_3:55767080-55767099 Msa0459280:intron 20.0%
!!! TAAAATGCCTTTGTTATAAT+TGG - chr3_3:55767364-55767383 Msa0459280:intron 20.0%
!! ATTCTTGATTGTTTATTCTT+AGG - chr3_3:55767923-55767942 Msa0459280:CDS 20.0%
!! TTCTTGATTGTTTATTCTTA+GGG - chr3_3:55767924-55767943 Msa0459280:CDS 20.0%
!!! CAACTTTTTTGTGATTGAAT+TGG - chr3_3:55765559-55765578 Msa0459280:CDS 25.0%
!!! ATTGGATTAATGTTGATTTG+AGG - chr3_3:55765577-55765596 Msa0459280:CDS 25.0%
!!! GATCTTGAAGTATTTCTTTT+TGG - chr3_3:55765756-55765775 Msa0459280:intron 25.0%
! TTGGAATGTTAATGTTGAAA+TGG - chr3_3:55765775-55765794 Msa0459280:intron 25.0%
! TGGAATGTTAATGTTGAAAT+GGG - chr3_3:55765776-55765795 Msa0459280:intron 25.0%
! CAAATCATCTAAACCAAAAA+TGG + chr3_3:55766160-55766179 None:intergenic 25.0%
! AAATGCATTTACAATTACTG+TGG - chr3_3:55766215-55766234 Msa0459280:intron 25.0%
! TATAATCAAAAGCTGCAAAA+TGG + chr3_3:55766714-55766733 None:intergenic 25.0%
! AACTGCAAATATTTCTTCTT+CGG - chr3_3:55766746-55766765 Msa0459280:intron 25.0%
! TTATCTACTAGAAGAAAGAA+AGG + chr3_3:55766925-55766944 None:intergenic 25.0%
!!! TTGGCAAGTTATTTTAGTAA+TGG - chr3_3:55766991-55767010 Msa0459280:intron 25.0%
!!! ATCACTTATTGATTTTTCAG+AGG - chr3_3:55767113-55767132 Msa0459280:intron 25.0%
!!! TCACTTATTGATTTTTCAGA+GGG - chr3_3:55767114-55767133 Msa0459280:intron 25.0%
! GTAAATCATAAGAAAGTGAT+TGG + chr3_3:55767238-55767257 None:intergenic 25.0%
! TTGTATCATAAGAAAGTGAT+TGG + chr3_3:55767300-55767319 None:intergenic 25.0%
! TACAATTAGATACATGCTTA+AGG - chr3_3:55767255-55767274 Msa0459280:intron 25.0%
! ATAAATAAGTCAGTAGGTAA+AGG + chr3_3:55767807-55767826 None:intergenic 25.0%
!!! TTTACCTACTGACTTATTTA+TGG - chr3_3:55767806-55767825 Msa0459280:CDS 25.0%
! CTATAGACAATTGAAGATAA+TGG + chr3_3:55767836-55767855 None:intergenic 25.0%
!!! TTTTAAAAGTTCGGAATGAA+AGG - chr3_3:55768036-55768055 Msa0459280:CDS 25.0%
CAGAGAAGAAGAAAATAGAA+TGG - chr3_3:55764957-55764976 Msa0459280:three_prime_UTR 30.0%
AGTAGTTGATTACGATTGTT+TGG - chr3_3:55765720-55765739 Msa0459280:intron 30.0%
GTAGTTGATTACGATTGTTT+GGG - chr3_3:55765721-55765740 Msa0459280:intron 30.0%
!! AAATGGGAATTTTAATGCGT+CGG - chr3_3:55765792-55765811 Msa0459280:intron 30.0%
CAATGAATTTGGCAAAATCA+CGG + chr3_3:55765901-55765920 None:intergenic 30.0%
!!! GTGTTGGATCTTTTGTTTTT+TGG - chr3_3:55766619-55766638 Msa0459280:CDS 30.0%
!! TATGATAGAAGTGTCTAAGT+TGG - chr3_3:55766652-55766671 Msa0459280:intron 30.0%
TGGTTGCAAATGTTTATACA+AGG + chr3_3:55766772-55766791 None:intergenic 30.0%
!!! TAGATGAAGTTTTGAACAGT+TGG + chr3_3:55766792-55766811 None:intergenic 30.0%
!!! CAAGTTATTTTAGTAATGGC+TGG - chr3_3:55766995-55767014 Msa0459280:intron 30.0%
AAACAACTGAAGTCAACAAA+CGG + chr3_3:55767056-55767075 None:intergenic 30.0%
CCACTAACCAATTATAACAA+AGG + chr3_3:55767374-55767393 None:intergenic 30.0%
! CCTTTGTTATAATTGGTTAG+TGG - chr3_3:55767371-55767390 Msa0459280:intron 30.0%
CCATATTATAAGATTCAGAG+GGG + chr3_3:55767489-55767508 None:intergenic 30.0%
CCCATATTATAAGATTCAGA+GGG + chr3_3:55767490-55767509 None:intergenic 30.0%
CCCTCTGAATCTTATAATAT+GGG - chr3_3:55767487-55767506 Msa0459280:intron 30.0%
TCCCATATTATAAGATTCAG+AGG + chr3_3:55767491-55767510 None:intergenic 30.0%
! GTTTGTTGCAACTGATAATT+CGG + chr3_3:55767628-55767647 None:intergenic 30.0%
AGTACCATAAATAAGTCAGT+AGG + chr3_3:55767813-55767832 None:intergenic 30.0%
!!! TGTTGTGGGTTTTAAAAGTT+CGG - chr3_3:55768027-55768046 Msa0459280:CDS 30.0%
TGTTGTATTGTTCCAATTGA+AGG - chr3_3:55768156-55768175 Msa0459280:five_prime_UTR 30.0%
ATTTCGACGACGAATATGTT+TGG - chr3_3:55765420-55765439 Msa0459280:CDS 35.0%
TTTCGACGACGAATATGTTT+GGG - chr3_3:55765421-55765440 Msa0459280:CDS 35.0%
! AAAAACCTCTTAGCACGTTT+TGG + chr3_3:55765510-55765529 None:intergenic 35.0%
CTAGATGAGCACAATGAATT+TGG + chr3_3:55765912-55765931 None:intergenic 35.0%
!! AGTATTGACATTTGGCACTT+TGG - chr3_3:55765942-55765961 Msa0459280:intron 35.0%
TTGAATGTCGCGTGTTTAAA+TGG - chr3_3:55766269-55766288 Msa0459280:intron 35.0%
TGAATGTCGCGTGTTTAAAT+GGG - chr3_3:55766270-55766289 Msa0459280:intron 35.0%
!! CTGAATTTTAGTGGTTGCTT+TGG - chr3_3:55766363-55766382 Msa0459280:intron 35.0%
TTCAAGCTCTTGTATATAGC+GGG + chr3_3:55766484-55766503 None:intergenic 35.0%
GTTCAAGCTCTTGTATATAG+CGG + chr3_3:55766485-55766504 None:intergenic 35.0%
GACCTGGTATAATGTCAATT+GGG + chr3_3:55766550-55766569 None:intergenic 35.0%
TGACCTGGTATAATGTCAAT+TGG + chr3_3:55766551-55766570 None:intergenic 35.0%
! TCTTAATGATGCGTTGATGA+AGG - chr3_3:55767423-55767442 Msa0459280:intron 35.0%
CCCCTCTGAATCTTATAATA+TGG - chr3_3:55767486-55767505 Msa0459280:intron 35.0%
! TTTTCAATGCCACAACATTC+AGG - chr3_3:55767544-55767563 Msa0459280:intron 35.0%
AACATACAGTTTCCCCAATT+TGG - chr3_3:55767583-55767602 Msa0459280:CDS 35.0%
TTTGCAACATAGCTGAGATT+TGG + chr3_3:55767660-55767679 None:intergenic 35.0%
GACATGTAGTCATCTAATGA+AGG - chr3_3:55767860-55767879 Msa0459280:CDS 35.0%
! TTTTTGCGACAAAACCACAA+GGG + chr3_3:55767973-55767992 None:intergenic 35.0%
ATGATACACATGACCAAAGA+GGG + chr3_3:55768103-55768122 None:intergenic 35.0%
CATCTTACATGTCCTTCAAT+TGG + chr3_3:55768171-55768190 None:intergenic 35.0%
GGTGAAGAAGAGATCATCTT+CGG + chr3_3:55765202-55765221 None:intergenic 40.0%
TACATTGACGTTGAGAAGCT+CGG - chr3_3:55765222-55765241 Msa0459280:three_prime_UTR 40.0%
AATTCGAATCAGACCGGTTA+CGG - chr3_3:55765264-55765283 Msa0459280:three_prime_UTR 40.0%
GAGGCATAGACATAGTTGTT+CGG - chr3_3:55765386-55765405 Msa0459280:CDS 40.0%
TTCGACGACGAATATGTTTG+GGG - chr3_3:55765422-55765441 Msa0459280:CDS 40.0%
GAATATGTTTGGGGAGATCA+TGG - chr3_3:55765431-55765450 Msa0459280:CDS 40.0%
CAAAGCTCAGCAAGTTTATC+AGG + chr3_3:55765477-55765496 None:intergenic 40.0%
!! CTGATAAACTTGCTGAGCTT+TGG - chr3_3:55765475-55765494 Msa0459280:CDS 40.0%
TTGATCCAAAACGTGCTAAG+AGG - chr3_3:55765502-55765521 Msa0459280:CDS 40.0%
! GTGTTGGTATTTGATGATCG+TGG - chr3_3:55765964-55765983 Msa0459280:intron 40.0%
!!! TGATGATCGTGGTTTTGTTG+TGG - chr3_3:55765975-55765994 Msa0459280:intron 40.0%
TGAAACTACAGCAGCTTCTA+TGG + chr3_3:55766328-55766347 None:intergenic 40.0%
TGTGCAGAATACTTGCAAAC+CGG - chr3_3:55766427-55766446 Msa0459280:intron 40.0%
TATACAAGAGCTTGAACGCA+AGG - chr3_3:55766488-55766507 Msa0459280:intron 40.0%
AGTTGTAGCCTCTGTTTGAA+GGG + chr3_3:55766520-55766539 None:intergenic 40.0%
TGCCCAATTGACATTATACC+AGG - chr3_3:55766545-55766564 Msa0459280:CDS 40.0%
! AGACTAAGTTGAAACTGACC+TGG + chr3_3:55766566-55766585 None:intergenic 40.0%
ACAAAAGATCCAACACACAG+AGG + chr3_3:55766615-55766634 None:intergenic 40.0%
!! GTAATGGCTGGTATTGATAC+TGG - chr3_3:55767007-55767026 Msa0459280:intron 40.0%
!! ATTTTTCAGAGGGACACAAC+TGG - chr3_3:55767124-55767143 Msa0459280:intron 40.0%
AATAGTAGCTACCATCTCGA+AGG + chr3_3:55767210-55767229 None:intergenic 40.0%
! CGTTGATGAAGGAAGTTGAT+AGG - chr3_3:55767434-55767453 Msa0459280:intron 40.0%
GATAGGCTTAAGATTGCTAC+CGG - chr3_3:55767451-55767470 Msa0459280:intron 40.0%
ATAGGCTTAAGATTGCTACC+GGG - chr3_3:55767452-55767471 Msa0459280:intron 40.0%
ATTGGGGAAACTGTATGTTC+TGG + chr3_3:55767582-55767601 None:intergenic 40.0%
!! AGCTGAGATTTGGTGAGAAT+TGG + chr3_3:55767650-55767669 None:intergenic 40.0%
ATGTTGCAAAACGATCAGCT+CGG - chr3_3:55767670-55767689 Msa0459280:CDS 40.0%
GTCAGTAGGTAAAGGAGTTT+AGG + chr3_3:55767799-55767818 None:intergenic 40.0%
! CTTTTTGCGACAAAACCACA+AGG + chr3_3:55767974-55767993 None:intergenic 40.0%
! CATATTGAAGCGTGGCATTT+TGG - chr3_3:55768004-55768023 Msa0459280:CDS 40.0%
GATGATACACATGACCAAAG+AGG + chr3_3:55768104-55768123 None:intergenic 40.0%
! ACGTTGGAAGAAGGTGCATT+GGG + chr3_3:55765000-55765019 None:intergenic 45.0%
CGAATGAAGACGTTGGAAGA+AGG + chr3_3:55765009-55765028 None:intergenic 45.0%
TCTTCCAACGTCTTCATTCG+CGG - chr3_3:55765009-55765028 Msa0459280:three_prime_UTR 45.0%
! ACGGTAGTTGATTTCGGAGT+GGG + chr3_3:55765094-55765113 None:intergenic 45.0%
AAAGGTCCATAATGTCGTCG+GGG + chr3_3:55765119-55765138 None:intergenic 45.0%
GAAAGGTCCATAATGTCGTC+GGG + chr3_3:55765120-55765139 None:intergenic 45.0%
GGAAAGGTCCATAATGTCGT+CGG + chr3_3:55765121-55765140 None:intergenic 45.0%
GAGCTTCTCAACGTCAATGT+AGG + chr3_3:55765223-55765242 None:intergenic 45.0%
! AAGCTCGGTGGAGTAACAAA+CGG - chr3_3:55765237-55765256 Msa0459280:three_prime_UTR 45.0%
GGTTCGAATTCGAATCAGAC+CGG - chr3_3:55765258-55765277 Msa0459280:three_prime_UTR 45.0%
AATAACGACGGAGAGAAGAG+TGG - chr3_3:55765339-55765358 Msa0459280:CDS 45.0%
ATAACGACGGAGAGAAGAGT+GGG - chr3_3:55765340-55765359 Msa0459280:CDS 45.0%
CTATGTCTATGCCTCGTTCT+CGG + chr3_3:55765381-55765400 None:intergenic 45.0%
GCATAGACATAGTTGTTCGG+TGG - chr3_3:55765389-55765408 Msa0459280:CDS 45.0%
! AGACATAGTTGTTCGGTGGA+TGG - chr3_3:55765393-55765412 Msa0459280:CDS 45.0%
AGCTCAGCAAGTTTATCAGG+AGG + chr3_3:55765474-55765493 None:intergenic 45.0%
AGAATCACGATGAGTTGTCG+TGG - chr3_3:55765833-55765852 Msa0459280:intron 45.0%
! GACATTTGGCACTTTGGTGT+TGG - chr3_3:55765948-55765967 Msa0459280:intron 45.0%
GCGTGTTTAAATGGGATGTC+AGG - chr3_3:55766278-55766297 Msa0459280:intron 45.0%
TGCGCGTTCAAAAGAGAGAA+AGG - chr3_3:55766458-55766477 Msa0459280:intron 45.0%
GAGTTGTAGCCTCTGTTTGA+AGG + chr3_3:55766521-55766540 None:intergenic 45.0%
CCAACACACAGAGGAATTTC+TGG + chr3_3:55766606-55766625 None:intergenic 45.0%
CCAGAAATTCCTCTGTGTGT+TGG - chr3_3:55766603-55766622 Msa0459280:CDS 45.0%
TAGGCTTAAGATTGCTACCG+GGG - chr3_3:55767453-55767472 Msa0459280:intron 45.0%
ATGCACCAGATGCAATTTGC+AGG - chr3_3:55767511-55767530 Msa0459280:intron 45.0%
TGCACCAGATGCAATTTGCA+GGG - chr3_3:55767512-55767531 Msa0459280:intron 45.0%
TTGACCCTGCAAATTGCATC+TGG + chr3_3:55767519-55767538 None:intergenic 45.0%
TGTATGTTCTGGTGACCTGA+AGG + chr3_3:55767571-55767590 None:intergenic 45.0%
AGATGGGGAGTGACCAAATT+GGG + chr3_3:55767599-55767618 None:intergenic 45.0%
ATAATTCGGCACGTCAGATG+GGG + chr3_3:55767614-55767633 None:intergenic 45.0%
GATAATTCGGCACGTCAGAT+GGG + chr3_3:55767615-55767634 None:intergenic 45.0%
TGATAATTCGGCACGTCAGA+TGG + chr3_3:55767616-55767635 None:intergenic 45.0%
TCTCACTTGCAGAGATTGAG+GGG + chr3_3:55767753-55767772 None:intergenic 45.0%
CTCTCACTTGCAGAGATTGA+GGG + chr3_3:55767754-55767773 None:intergenic 45.0%
ACTCTCACTTGCAGAGATTG+AGG + chr3_3:55767755-55767774 None:intergenic 45.0%
TTAGGGATGCTCCCCAAATA+GGG - chr3_3:55767941-55767960 Msa0459280:CDS 45.0%
CACGCTTCAATATGATTGCG+TGG + chr3_3:55767998-55768017 None:intergenic 45.0%
CACGCAATCATATTGAAGCG+TGG - chr3_3:55767996-55768015 Msa0459280:CDS 45.0%
! GATGCTTTTCGATCCCTCTT+TGG - chr3_3:55768087-55768106 Msa0459280:CDS 45.0%
! GACGTTGGAAGAAGGTGCAT+TGG + chr3_3:55765001-55765020 None:intergenic 50.0%
! GACGGTAGTTGATTTCGGAG+TGG + chr3_3:55765095-55765114 None:intergenic 50.0%
! GGGGAGACGGTAGTTGATTT+CGG + chr3_3:55765100-55765119 None:intergenic 50.0%
TTAAGGGATCGGAAGGGGAA+AGG + chr3_3:55765137-55765156 None:intergenic 50.0%
ATTGACGTTGAGAAGCTCGG+TGG - chr3_3:55765225-55765244 Msa0459280:three_prime_UTR 50.0%
!! GTCGTTATTCCCACTGGTTC+CGG + chr3_3:55765328-55765347 None:intergenic 50.0%
GGAACCAGTGGGAATAACGA+CGG - chr3_3:55765327-55765346 Msa0459280:CDS 50.0%
GGTTCAGACCCTTCAAACAG+AGG - chr3_3:55766509-55766528 Msa0459280:intron 50.0%
! GCTGTTCCATGGATTGCAGA+CGG + chr3_3:55767180-55767199 None:intergenic 50.0%
TCTGCAATCCATGGAACAGC+AGG - chr3_3:55767180-55767199 Msa0459280:intron 50.0%
CCTGAAGGACCTGAATGTTG+TGG + chr3_3:55767556-55767575 None:intergenic 50.0%
CCACAACATTCAGGTCCTTC+AGG - chr3_3:55767553-55767572 Msa0459280:intron 50.0%
GATGGGGAGTGACCAAATTG+GGG + chr3_3:55767598-55767617 None:intergenic 50.0%
CAGATGGGGAGTGACCAAAT+TGG + chr3_3:55767600-55767619 None:intergenic 50.0%
GGGCTTGACATCAGTAGCAA+AGG - chr3_3:55767703-55767722 Msa0459280:CDS 50.0%
GGGGGTTTCAGATTTCACGA+GGG + chr3_3:55767734-55767753 None:intergenic 50.0%
AGGGGGTTTCAGATTTCACG+AGG + chr3_3:55767735-55767754 None:intergenic 50.0%
CTCACTTGCAGAGATTGAGG+GGG + chr3_3:55767752-55767771 None:intergenic 50.0%
CTTAGGGATGCTCCCCAAAT+AGG - chr3_3:55767940-55767959 Msa0459280:CDS 50.0%
TAGGGATGCTCCCCAAATAG+GGG - chr3_3:55767942-55767961 Msa0459280:CDS 50.0%
!! AAGGGTGCTTCCCCTATTTG+GGG + chr3_3:55767955-55767974 None:intergenic 50.0%
!! CAAGGGTGCTTCCCCTATTT+GGG + chr3_3:55767956-55767975 None:intergenic 50.0%
!! ACAAGGGTGCTTCCCCTATT+TGG + chr3_3:55767957-55767976 None:intergenic 50.0%
!! AAATAGGGGAAGCACCCTTG+TGG - chr3_3:55767956-55767975 Msa0459280:CDS 50.0%
!!! AGCGTGGCATTTTGGTGTTG+TGG - chr3_3:55768012-55768031 Msa0459280:CDS 50.0%
!!! GCGTGGCATTTTGGTGTTGT+GGG - chr3_3:55768013-55768032 Msa0459280:CDS 50.0%
TTCATTCGCGGCAGCGTCAA+CGG - chr3_3:55765021-55765040 Msa0459280:three_prime_UTR 55.0%
CCATAATGTCGTCGGGGAGA+CGG + chr3_3:55765113-55765132 None:intergenic 55.0%
TCCCCTTCCGATCCCTTAAC+CGG - chr3_3:55765138-55765157 Msa0459280:three_prime_UTR 55.0%
ACCGGTTACGGTAATTGCGC+CGG - chr3_3:55765276-55765295 Msa0459280:three_prime_UTR 55.0%
ACCGGCGCAATTACCGTAAC+CGG + chr3_3:55765280-55765299 None:intergenic 55.0%
CTCTCCGTCGTTATTCCCAC+TGG + chr3_3:55765334-55765353 None:intergenic 55.0%
ATGTTACGACGCCGAGAACG+AGG - chr3_3:55765367-55765386 Msa0459280:CDS 55.0%
TTGAACGCGCAGCAGATTGC+CGG + chr3_3:55766449-55766468 None:intergenic 55.0%
TTGCAGACGGAGCTTGAGCT+CGG + chr3_3:55767167-55767186 None:intergenic 55.0%
CAAGCTCCGTCTGCAATCCA+TGG - chr3_3:55767171-55767190 Msa0459280:intron 55.0%
AAGGTGTGCCTGCTGTTCCA+TGG + chr3_3:55767191-55767210 None:intergenic 55.0%
GCTTAAGATTGCTACCGGGG+AGG - chr3_3:55767456-55767475 Msa0459280:intron 55.0%
GATCAGCTCGGTCGTTTGCA+GGG - chr3_3:55767682-55767701 Msa0459280:CDS 55.0%
ATCAGCTCGGTCGTTTGCAG+GGG - chr3_3:55767683-55767702 Msa0459280:CDS 55.0%
GCTGCCGCGAATGAAGACGT+TGG + chr3_3:55765016-55765035 None:intergenic 60.0%
! GTGGTGAGAGTGGGTTTCGC+CGG + chr3_3:55765064-55765083 None:intergenic 60.0%
TGATTTCGGAGTGGGCGCGA+CGG + chr3_3:55765086-55765105 None:intergenic 60.0%
CCGTCTCCCCGACGACATTA+TGG - chr3_3:55765110-55765129 Msa0459280:three_prime_UTR 60.0%
GCCGGTTAAGGGATCGGAAG+GGG + chr3_3:55765142-55765161 None:intergenic 60.0%
! CGCCGGTTAAGGGATCGGAA+GGG + chr3_3:55765143-55765162 None:intergenic 60.0%
CCTTCCGATCCCTTAACCGG+CGG - chr3_3:55765141-55765160 Msa0459280:three_prime_UTR 60.0%
CTTCGGATCCGATCTCGTCG+AGG + chr3_3:55765185-55765204 None:intergenic 60.0%
! TACGGTAATTGCGCCGGTGC+CGG - chr3_3:55765282-55765301 Msa0459280:three_prime_UTR 60.0%
CAGCAGGCACACCTTCGAGA+TGG - chr3_3:55767196-55767215 Msa0459280:intron 60.0%
AGAGGGGTTCATTGCCTCCC+CGG + chr3_3:55767473-55767492 None:intergenic 60.0%
CGATCAGCTCGGTCGTTTGC+AGG - chr3_3:55767681-55767700 Msa0459280:CDS 60.0%
! AGAGTGGGTTTCGCCGGCGA+CGG + chr3_3:55765058-55765077 None:intergenic 65.0%
! CCGCCGGTTAAGGGATCGGA+AGG + chr3_3:55765144-55765163 None:intergenic 65.0%
TCCGATCCCTTAACCGGCGG+CGG - chr3_3:55765144-55765163 Msa0459280:three_prime_UTR 65.0%
! TCCGCCGCCGGTTAAGGGAT+CGG + chr3_3:55765148-55765167 None:intergenic 65.0%
! GAGGATCCGCCGCCGGTTAA+GGG + chr3_3:55765153-55765172 None:intergenic 65.0%
ACCGCCAGCCTCGACGAGAT+CGG - chr3_3:55765174-55765193 Msa0459280:three_prime_UTR 65.0%
TCCGATCTCGTCGAGGCTGG+CGG + chr3_3:55765178-55765197 None:intergenic 65.0%
GGATCCGATCTCGTCGAGGC+TGG + chr3_3:55765181-55765200 None:intergenic 65.0%
!! ATTCCCACTGGTTCCGGCGC+CGG + chr3_3:55765322-55765341 None:intergenic 65.0%
GGCGCGACGGTGGTGAGAGT+GGG + chr3_3:55765073-55765092 None:intergenic 70.0%
TTTCGGAGTGGGCGCGACGG+TGG + chr3_3:55765083-55765102 None:intergenic 70.0%
! GGAGGATCCGCCGCCGGTTA+AGG + chr3_3:55765154-55765173 None:intergenic 70.0%
GATCTCGTCGAGGCTGGCGG+TGG + chr3_3:55765175-55765194 None:intergenic 70.0%
!! AATTGCGCCGGTGCCGGTGC+CGG - chr3_3:55765288-55765307 Msa0459280:exon 70.0%
GGCGTCTCCACCACCGTCGC+CGG - chr3_3:55765042-55765061 Msa0459280:three_prime_UTR 75.0%
GGTTTCGCCGGCGACGGTGG+TGG + chr3_3:55765052-55765071 None:intergenic 75.0%
GTGGGTTTCGCCGGCGACGG+TGG + chr3_3:55765055-55765074 None:intergenic 75.0%
GGGCGCGACGGTGGTGAGAG+TGG + chr3_3:55765074-55765093 None:intergenic 75.0%
CTCGTCGAGGCTGGCGGTGG+AGG + chr3_3:55765172-55765191 None:intergenic 75.0%
!! ACTGGTTCCGGCGCCGGCTC+CGG + chr3_3:55765316-55765335 None:intergenic 75.0%
! GAGCCGGCGCCGGAACCAGT+GGG - chr3_3:55765316-55765335 Msa0459280:CDS 75.0%
! GGCGGTGGAGGATCCGCCGC+CGG + chr3_3:55765160-55765179 None:intergenic 80.0%
!!! TCCGGCACCGGCACCGGCAC+CGG + chr3_3:55765298-55765317 None:intergenic 80.0%
!! GGAGCCGGCGCCGGAACCAG+TGG - chr3_3:55765315-55765334 Msa0459280:CDS 80.0%
!!! GCCGGTGCCGGTGCCGGTGC+CGG - chr3_3:55765294-55765313 Msa0459280:exon 85.0%
!!! GCCGGTGCCGGTGCCGGAGC+CGG - chr3_3:55765300-55765319 Msa0459280:exon 85.0%
!!! GCCGGCTCCGGCACCGGCAC+CGG + chr3_3:55765304-55765323 None:intergenic 85.0%
!!! TCCGGCGCCGGCTCCGGCAC+CGG + chr3_3:55765310-55765329 None:intergenic 85.0%
!! GCCGGTGCCGGAGCCGGCGC+CGG - chr3_3:55765306-55765325 Msa0459280:CDS 90.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 55764882 55768211 55764882 ID=Msa0459280;Name=Msa0459280
chr3_3 mRNA 55764882 55768211 55764882 ID=Msa0459280-mRNA-1;Parent=Msa0459280;Name=Msa0459280-mRNA-1;_AED=0.02;_eAED=0.02;_QI=94|1|1|1|1|1|4|422|377
chr3_3 exon 55764882 55765671 55764882 ID=Msa0459280-mRNA-1:exon:11067;Parent=Msa0459280-mRNA-1
chr3_3 exon 55765876 55765960 55765876 ID=Msa0459280-mRNA-1:exon:11066;Parent=Msa0459280-mRNA-1
chr3_3 exon 55766527 55766659 55766527 ID=Msa0459280-mRNA-1:exon:11065;Parent=Msa0459280-mRNA-1
chr3_3 exon 55767570 55768211 55767570 ID=Msa0459280-mRNA-1:exon:11064;Parent=Msa0459280-mRNA-1
chr3_3 five_prime_UTR 55768118 55768211 55768118 ID=Msa0459280-mRNA-1:five_prime_utr;Parent=Msa0459280-mRNA-1
chr3_3 CDS 55767570 55768117 55767570 ID=Msa0459280-mRNA-1:cds;Parent=Msa0459280-mRNA-1
chr3_3 CDS 55766527 55766659 55766527 ID=Msa0459280-mRNA-1:cds;Parent=Msa0459280-mRNA-1
chr3_3 CDS 55765876 55765960 55765876 ID=Msa0459280-mRNA-1:cds;Parent=Msa0459280-mRNA-1
chr3_3 CDS 55765304 55765671 55765304 ID=Msa0459280-mRNA-1:cds;Parent=Msa0459280-mRNA-1
chr3_3 three_prime_UTR 55764882 55765303 55764882 ID=Msa0459280-mRNA-1:three_prime_utr;Parent=Msa0459280-mRNA-1
Gene Sequence

>Msa0459280

ATGGCAACACAAATGCAAGATCCCAATGCACCTTCTTCCAACGTCTTCATTCGCGGCAGCGTCAACGGCGTCTCCACCACCGTCGCCGGCGAAACCCACTCTCACCACCGTCGCGCCCACTCCGAAATCAACTACCGTCTCCCCGACGACATTATGGACCTTTCCCCTTCCGATCCCTTAACCGGCGGCGGATCCTCCACCGCCAGCCTCGACGAGATCGGATCCGAAGATGATCTCTTCTTCACCTACATTGACGTTGAGAAGCTCGGTGGAGTAACAAACGGTTCGAATTCGAATCAGACCGGTTACGGTAATTGCGCCGGTGCCGGTGCCGGTGCCGGAGCCGGCGCCGGAACCAGTGGGAATAACGACGGAGAGAAGAGTGGGAACGATGTTACGACGCCGAGAACGAGGCATAGACATAGTTGTTCGGTGGATGGATCAATTTCGACGACGAATATGTTTGGGGAGATCATGGATGCGAAGAAAGCTATGCCTCCTGATAAACTTGCTGAGCTTTGGACTATTGATCCAAAACGTGCTAAGAGAATACTTGCAAACCGGCAATCTGCTGCGCGTTCAAAAGAGAGAAAGGCCCGCTATATACAAGAGCTTGAACGCAAGGTTCAGACCCTTCAAACAGAGGCTACAACTCTCTCTGCCCAATTGACATTATACCAGAGGGACACAACTGGTCTGAGTACTGAAAATACCGAGCTCAAGCTCCGTCTGCAATCCATGGAACAGCAGGCACACCTTCGAGATGCTCTTAATGATGCGTTGATGAAGGAAGTTGATAGGCTTAAGATTGCTACCGGGGAGGCAATGAACCCCTCTGAATCTTATAATATGGGAATGCACCAGATGCAATTTGCAGGGTCAAATTTCTTTTCAATGCCACAACATTCAGGTCCTTCAGGTCACCAGAACATACAGTTTCCCCAATTTGGTCACTCCCCATCTGACGTGCCGAATTATCAGTTGCAACAAACCAATTCTCACCAAATCTCAGCTATGTTGCAAAACGATCAGCTCGGTCGTTTGCAGGGGCTTGACATCAGTAGCAAAGGATCAACCCTCGTGAAATCTGAAACCCCCTCAATCTCTGCAAGTGAGAGTAGCACTACATTTTGA
Protein sequence

>Msa0459280

MATQMQDPNAPSSNVFIRGSVNGVSTTVAGETHSHHRRAHSEINYRLPDDIMDLSPSDPLTGGGSSTASLDEIGSEDDLFFTYIDVEKLGGVTNGSNSNQTGYGNCAGAGAGAGAGAGTSGNNDGEKSGNDVTTPRTRHRHSCSVDGSISTTNMFGEIMDAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQSMEQQAHLRDALNDALMKEVDRLKIATGEAMNPSESYNMGMHQMQFAGSNFFSMPQHSGPSGHQNIQFPQFGHSPSDVPNYQLQQTNSHQISAMLQNDQLGRLQGLDISSKGSTLVKSETPSISASESSTTF*