Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366480 | XP_013460447.1 | 96.552 | 377 | 9 | 2 | 1 | 373 | 1 | 377 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366480 | sp|Q6S4P4|RF2B_ORYSJ | 53.161 | 348 | 122 | 7 | 34 | 373 | 15 | 329 | 7.88e-101 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366480 | A0A072V8H4 | 96.552 | 377 | 9 | 2 | 1 | 373 | 1 | 377 | 0.0 | 749 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0366480 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0137710 | Msa0366480 | 0.805989 | 1.022444e-49 | -8.615850e-47 |
| Msa0191940 | Msa0366480 | -0.831035 | 2.096909e-55 | -8.615850e-47 |
| Msa0194950 | Msa0366480 | 0.825126 | 5.556711e-54 | -8.615850e-47 |
| Msa0234050 | Msa0366480 | -0.835716 | 1.426738e-56 | -8.615850e-47 |
| Msa0366480 | Msa0414460 | 0.800704 | 1.272311e-48 | -8.615850e-47 |
| Msa0366480 | Msa0459280 | 0.849947 | 2.331006e-60 | -8.615850e-47 |
| Msa0366480 | Msa0477080 | -0.843069 | 1.757386e-58 | -8.615850e-47 |
| Msa0366480 | Msa0493630 | -0.801988 | 6.942839e-49 | -8.615850e-47 |
| Msa0366480 | Msa0506240 | 0.867999 | 9.043453e-66 | -8.615850e-47 |
| Msa0366480 | Msa0608710 | -0.807881 | 4.069690e-50 | -8.615850e-47 |
| Msa0366480 | Msa0647500 | -0.800334 | 1.513043e-48 | -8.615850e-47 |
| Msa0366480 | Msa1087850 | -0.828991 | 6.607816e-55 | -8.615850e-47 |
| Msa0366480 | Msa1305660 | -0.817704 | 2.872839e-52 | -8.615850e-47 |
| Msa0366480 | Msa1434420 | 0.808534 | 2.954969e-50 | -8.615850e-47 |
| Msa0366480 | Msa1444740 | -0.802075 | 6.663038e-49 | -8.615850e-47 |
| Msa0308270 | Msa0366480 | -0.835637 | 1.494283e-56 | -8.615850e-47 |
| Msa0315440 | Msa0366480 | 0.832593 | 8.652565e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366480 | MtrunA17_Chr3g0107491 | 96.552 | 377 | 9 | 2 | 1 | 373 | 1 | 377 | 0.0 | 749 |
| Msa0366480 | MtrunA17_Chr5g0432701 | 71.765 | 340 | 66 | 5 | 34 | 373 | 49 | 358 | 2.13e-170 | 479 |
| Msa0366480 | MtrunA17_Chr3g0128781 | 46.243 | 346 | 137 | 11 | 36 | 373 | 7 | 311 | 3.06e-86 | 263 |
| Msa0366480 | MtrunA17_Chr2g0329551 | 53.257 | 261 | 90 | 8 | 36 | 274 | 72 | 322 | 8.79e-69 | 222 |
| Msa0366480 | MtrunA17_Chr6g0463571 | 45.907 | 281 | 118 | 13 | 34 | 305 | 26 | 281 | 1.01e-54 | 182 |
| Msa0366480 | MtrunA17_Chr4g0036071 | 38.462 | 312 | 118 | 4 | 32 | 270 | 147 | 457 | 2.27e-52 | 181 |
| Msa0366480 | MtrunA17_Chr1g0156051 | 40.000 | 260 | 99 | 6 | 63 | 265 | 220 | 479 | 8.35e-32 | 125 |
| Msa0366480 | MtrunA17_Chr2g0316551 | 46.316 | 95 | 51 | 0 | 171 | 265 | 206 | 300 | 1.75e-20 | 91.3 |
| Msa0366480 | MtrunA17_Chr2g0325131 | 47.312 | 93 | 49 | 0 | 173 | 265 | 191 | 283 | 1.52e-19 | 88.6 |
| Msa0366480 | MtrunA17_Chr4g0040891 | 41.379 | 116 | 57 | 1 | 173 | 277 | 194 | 309 | 6.65e-19 | 86.7 |
| Msa0366480 | MtrunA17_Chr1g0202051 | 35.185 | 162 | 91 | 3 | 109 | 270 | 74 | 221 | 6.78e-19 | 85.9 |
| Msa0366480 | MtrunA17_Chr8g0380611 | 41.935 | 93 | 49 | 1 | 173 | 265 | 234 | 321 | 6.57e-12 | 66.2 |
| Msa0366480 | MtrunA17_Chr2g0306581 | 63.265 | 49 | 18 | 0 | 161 | 209 | 1 | 49 | 8.59e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366480 | AT2G40620.1 | 47.537 | 406 | 137 | 14 | 5 | 373 | 1 | 367 | 3.13e-99 | 299 |
| Msa0366480 | AT1G06850.1 | 64.929 | 211 | 63 | 3 | 152 | 362 | 127 | 326 | 7.31e-85 | 261 |
| Msa0366480 | AT2G31370.5 | 49.632 | 272 | 112 | 9 | 36 | 291 | 58 | 320 | 1.18e-66 | 216 |
| Msa0366480 | AT2G31370.2 | 49.632 | 272 | 112 | 9 | 36 | 291 | 58 | 320 | 1.96e-66 | 216 |
| Msa0366480 | AT2G31370.4 | 49.632 | 272 | 112 | 9 | 36 | 291 | 58 | 320 | 1.96e-66 | 216 |
| Msa0366480 | AT2G31370.1 | 49.632 | 272 | 112 | 9 | 36 | 291 | 58 | 320 | 1.96e-66 | 216 |
| Msa0366480 | AT2G31370.7 | 49.632 | 272 | 112 | 9 | 36 | 291 | 58 | 320 | 1.96e-66 | 216 |
| Msa0366480 | AT2G31370.3 | 49.632 | 272 | 112 | 9 | 36 | 291 | 58 | 320 | 1.96e-66 | 216 |
| Msa0366480 | AT2G31370.6 | 49.632 | 272 | 112 | 9 | 36 | 291 | 58 | 320 | 1.96e-66 | 216 |
| Msa0366480 | AT1G06070.1 | 50.195 | 257 | 106 | 8 | 36 | 281 | 73 | 318 | 2.95e-62 | 206 |
| Msa0366480 | AT4G38900.2 | 39.889 | 361 | 117 | 14 | 16 | 280 | 146 | 502 | 2.42e-50 | 177 |
| Msa0366480 | AT4G38900.3 | 39.889 | 361 | 117 | 14 | 16 | 280 | 146 | 502 | 2.42e-50 | 177 |
| Msa0366480 | AT4G38900.1 | 39.237 | 367 | 117 | 15 | 16 | 280 | 146 | 508 | 5.50e-48 | 171 |
| Msa0366480 | AT1G43700.1 | 55.882 | 170 | 64 | 3 | 135 | 293 | 146 | 315 | 2.85e-45 | 159 |
| Msa0366480 | AT2G21230.4 | 67.826 | 115 | 37 | 0 | 156 | 270 | 353 | 467 | 2.62e-42 | 155 |
| Msa0366480 | AT2G21230.1 | 67.826 | 115 | 37 | 0 | 156 | 270 | 353 | 467 | 2.62e-42 | 155 |
| Msa0366480 | AT1G06850.2 | 53.020 | 149 | 55 | 2 | 80 | 228 | 70 | 203 | 5.42e-41 | 144 |
| Msa0366480 | AT2G21230.3 | 63.636 | 121 | 38 | 1 | 156 | 270 | 353 | 473 | 2.52e-39 | 147 |
| Msa0366480 | AT2G21230.2 | 68.687 | 99 | 31 | 0 | 156 | 254 | 353 | 451 | 4.35e-36 | 137 |
| Msa0366480 | AT2G12900.1 | 41.346 | 104 | 60 | 1 | 165 | 268 | 109 | 211 | 3.61e-20 | 89.4 |
| Msa0366480 | AT2G42380.2 | 45.745 | 94 | 51 | 0 | 172 | 265 | 185 | 278 | 8.96e-20 | 89.4 |
| Msa0366480 | AT3G58120.1 | 46.237 | 93 | 50 | 0 | 173 | 265 | 202 | 294 | 8.98e-20 | 89.7 |
| Msa0366480 | AT2G13150.1 | 41.584 | 101 | 58 | 1 | 165 | 265 | 142 | 241 | 2.50e-17 | 81.3 |
| Msa0366480 | AT2G12940.1 | 39.423 | 104 | 62 | 1 | 164 | 267 | 140 | 242 | 6.63e-17 | 80.9 |
| Msa0366480 | AT2G42380.5 | 45.238 | 84 | 46 | 0 | 171 | 254 | 184 | 267 | 7.30e-17 | 80.1 |
| Msa0366480 | AT2G21235.1 | 34.028 | 144 | 63 | 2 | 173 | 284 | 359 | 502 | 2.51e-16 | 80.9 |
| Msa0366480 | AT3G58120.2 | 46.835 | 79 | 42 | 0 | 173 | 251 | 202 | 280 | 8.09e-16 | 77.4 |
| Msa0366480 | AT2G42380.1 | 40.426 | 94 | 45 | 1 | 172 | 265 | 185 | 267 | 2.22e-13 | 70.5 |
| Msa0366480 | AT1G58110.1 | 44.048 | 84 | 47 | 0 | 182 | 265 | 238 | 321 | 2.77e-12 | 67.8 |
| Msa0366480 | AT1G58110.2 | 44.048 | 84 | 47 | 0 | 182 | 265 | 238 | 321 | 2.77e-12 | 67.8 |
Find 154 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGATTGTTTATTCTT+AGG | 0.126299 | 3_1:-61358268 | Msa0366480:three_prime_UTR |
| ACGAGGGTGCTTCCCCTATT+TGG | 0.145338 | 3_1:+61358235 | None:intergenic |
| CCCCTCTGAATCTTATAATA+TGG | 0.191240 | 3_1:-61358705 | Msa0366480:CDS |
| CATATTGAAGCGTGGCATTT+TGG | 0.200017 | 3_1:-61358185 | Msa0366480:three_prime_UTR |
| CGAGGGTGCTTCCCCTATTT+GGG | 0.217018 | 3_1:+61358236 | None:intergenic |
| AACATACAATTTCCCCAATT+TGG | 0.232116 | 3_1:-61358608 | Msa0366480:CDS |
| TAGGGATATGCTCCCCAAAT+AGG | 0.264243 | 3_1:-61358249 | Msa0366480:three_prime_UTR |
| TCCGGCGCCGGCACCGGCAC+CGG | 0.275782 | 3_1:+61360885 | None:intergenic |
| GGAGGATCCGCCGCCGGTTA+AGG | 0.280693 | 3_1:+61361029 | None:intergenic |
| CAAAGCTCAGCGAGTTTATC+AGG | 0.287151 | 3_1:+61360718 | None:intergenic |
| CCGTCTCCCCGACGACATTA+TGG | 0.308655 | 3_1:-61361070 | Msa0366480:CDS |
| TTCTTGATTGTTTATTCTTA+GGG | 0.318285 | 3_1:-61358267 | Msa0366480:three_prime_UTR |
| CGATCAGCTCGGTCGTTTGC+AGG | 0.321109 | 3_1:-61358510 | Msa0366480:CDS |
| CACTTTGTATCTTTGTATGT+TGG | 0.322316 | 3_1:-61358124 | Msa0366480:three_prime_UTR |
| AATTGCGCCGGTGCCGGTGC+CGG | 0.323134 | 3_1:-61360892 | Msa0366480:CDS |
| GCCGGTGCCGGTGCCGGCGC+CGG | 0.325178 | 3_1:-61360886 | Msa0366480:CDS |
| AGCTGAGATTTGGTGAGAAT+TGG | 0.342600 | 3_1:+61358544 | None:intergenic |
| AGATGGGGAGTGACCAAATT+GGG | 0.344045 | 3_1:+61358595 | None:intergenic |
| GTTTGTTGCAACTGATAATT+CGG | 0.347347 | 3_1:+61358566 | None:intergenic |
| GTCAGTAGGTCAAGGAGTTT+AGG | 0.356324 | 3_1:+61358395 | None:intergenic |
| CAGATGGGGAGTGACCAAAT+TGG | 0.358510 | 3_1:+61358594 | None:intergenic |
| CATCTTACATGTCCTTCAAT+TGG | 0.360792 | 3_1:+61358020 | None:intergenic |
| AGGGATATGCTCCCCAAATA+GGG | 0.361359 | 3_1:-61358248 | Msa0366480:three_prime_UTR |
| AATTCGAATCAGACCGGTTA+CGG | 0.362184 | 3_1:-61360916 | Msa0366480:CDS |
| TACGGCAATTGCGCCGGTGC+CGG | 0.367184 | 3_1:-61360898 | Msa0366480:CDS |
| ACTTTGTATCTTTGTATGTT+GGG | 0.367471 | 3_1:-61358123 | Msa0366480:three_prime_UTR |
| TGTTGTATTGTTCCAATTGA+AGG | 0.367690 | 3_1:-61358032 | Msa0366480:three_prime_UTR |
| GGGTTCGCCGGCGACGGTGG+TGG | 0.376326 | 3_1:+61361131 | None:intergenic |
| CTATGTCTATGCCTCGTTCT+CGG | 0.379698 | 3_1:+61360814 | None:intergenic |
| CCACAACATTCAGGTCCTTC+AGG | 0.383951 | 3_1:-61358638 | Msa0366480:CDS |
| TGACCTGGTATAATGTCAAT+TGG | 0.386653 | 3_1:+61359643 | None:intergenic |
| CCCTCTGAATCTTATAATAT+GGG | 0.390160 | 3_1:-61358704 | Msa0366480:CDS |
| TTTGCAACATAGCTGAGATT+TGG | 0.394152 | 3_1:+61358534 | None:intergenic |
| ACTTCGACGACGAATATGTT+TGG | 0.402900 | 3_1:-61360772 | Msa0366480:CDS |
| GGGGAGACGGTAGTTGATTT+CGG | 0.404834 | 3_1:+61361083 | None:intergenic |
| TCCCCTTCCGATCCCTTAAC+CGG | 0.405073 | 3_1:-61361042 | Msa0366480:CDS |
| ATGCACCAGATGCAATTTGC+AGG | 0.409287 | 3_1:-61358680 | Msa0366480:CDS |
| GAGGATCCGCCGCCGGTTAA+GGG | 0.411594 | 3_1:+61361030 | None:intergenic |
| CGTTGATGAAGGAAGTTGAT+AGG | 0.413861 | 3_1:-61358757 | Msa0366480:CDS |
| CTATAGACAATTGAAGATAA+TGG | 0.414062 | 3_1:+61358358 | None:intergenic |
| CTGATAAACTCGCTGAGCTT+TGG | 0.417393 | 3_1:-61360717 | Msa0366480:CDS |
| ACGTTGAAACCAAATATTAA+CGG | 0.428228 | 3_1:+61361326 | None:intergenic |
| CTCGTCGAGGCTAGCGGTGG+AGG | 0.435014 | 3_1:+61361011 | None:intergenic |
| ACCGGCGCAATTGCCGTAAC+CGG | 0.439556 | 3_1:+61360903 | None:intergenic |
| TTGAACGCGCAGCAGATTGC+CGG | 0.443274 | 3_1:+61359745 | None:intergenic |
| GTCGTTATTACCACTCGTTC+CGG | 0.443362 | 3_1:+61360867 | None:intergenic |
| TGATAATTCGGCACGTCAGA+TGG | 0.444587 | 3_1:+61358578 | None:intergenic |
| GGCGCGACGGTGGTGAGAGT+GGG | 0.450968 | 3_1:+61361110 | None:intergenic |
| GAGTTGTAGCCTCTGTTTGA+AGG | 0.453582 | 3_1:+61359673 | None:intergenic |
| AGAGTGGGGTTCGCCGGCGA+CGG | 0.455624 | 3_1:+61361125 | None:intergenic |
| AAATGAAATATTTAATGAAA+AGG | 0.458073 | 3_1:+61358304 | None:intergenic |
| GATCAGCTCGGTCGTTTGCA+GGG | 0.472645 | 3_1:-61358509 | Msa0366480:CDS |
| GGGCGCGACGGTGGTGAGAG+TGG | 0.474328 | 3_1:+61361109 | None:intergenic |
| GAAAGGTCCATAATGTCGTC+GGG | 0.474927 | 3_1:+61361063 | None:intergenic |
| TCTGCAATCCATGGAACAAC+AGG | 0.475201 | 3_1:-61359011 | Msa0366480:CDS |
| TTGATCCAAAACGTGCTAAG+AGG | 0.475774 | 3_1:-61360690 | Msa0366480:intron |
| ACTCTCACTTGCAGAGATTG+AGG | 0.477229 | 3_1:+61358439 | None:intergenic |
| TTGACCCTGCAAATTGCATC+TGG | 0.487667 | 3_1:+61358675 | None:intergenic |
| TGAATTATCCAAAACAGAAA+AGG | 0.488063 | 3_1:-61357999 | Msa0366480:three_prime_UTR |
| ATTACCACTCGTTCCGGCGC+CGG | 0.488306 | 3_1:+61360873 | None:intergenic |
| ATTGGGGAAATTGTATGTTC+TGG | 0.495354 | 3_1:+61358612 | None:intergenic |
| GACGTTGGAAGAAGGTGCAT+TGG | 0.495650 | 3_1:+61361182 | None:intergenic |
| CTCTCACTTGCAGAGATTGA+GGG | 0.495905 | 3_1:+61358440 | None:intergenic |
| GAATATGTTTGGAGAGATCA+TGG | 0.496464 | 3_1:-61360761 | Msa0366480:CDS |
| CCATAATGTCGTCGGGGAGA+CGG | 0.497730 | 3_1:+61361070 | None:intergenic |
| ACTCGTTCCGGCGCCGGCAC+CGG | 0.500330 | 3_1:+61360879 | None:intergenic |
| ACGTTGGAAGAAGGTGCATT+GGG | 0.501336 | 3_1:+61361183 | None:intergenic |
| TTCATTCGCGGCAGTGTCAA+CGG | 0.502065 | 3_1:-61361159 | Msa0366480:CDS |
| AAAAGAAGAAGAAAATAGAA+TGG | 0.503574 | 3_1:-61361223 | Msa0366480:exon |
| GATAGGCTTAAGATTGCTAC+CGG | 0.505157 | 3_1:-61358740 | Msa0366480:CDS |
| GGTAAAGAAGAGATCGTCTT+CGG | 0.507010 | 3_1:+61360981 | None:intergenic |
| GCCGGTTAAGGGATCGGAAG+GGG | 0.507894 | 3_1:+61361041 | None:intergenic |
| ACGGTAGTTGATTTCGGAGT+GGG | 0.509526 | 3_1:+61361089 | None:intergenic |
| CAAGCTCCGTCTGCAATCCA+TGG | 0.511411 | 3_1:-61359020 | Msa0366480:CDS |
| CGAATGAAGACGTTGGAAGA+AGG | 0.511752 | 3_1:+61361174 | None:intergenic |
| TTCAAGCTCTTGTATATAGC+GGG | 0.514078 | 3_1:+61359710 | None:intergenic |
| TCCGATCCCTTAACCGGCGG+CGG | 0.520683 | 3_1:-61361036 | Msa0366480:CDS |
| TCTTCCAACGTCTTCATTCG+CGG | 0.520953 | 3_1:-61361171 | Msa0366480:CDS |
| GACCTGGTATAATGTCAATT+GGG | 0.526658 | 3_1:+61359644 | None:intergenic |
| GATAATTCGGCACGTCAGAT+GGG | 0.528159 | 3_1:+61358579 | None:intergenic |
| GTGGGGTTCGCCGGCGACGG+TGG | 0.529051 | 3_1:+61361128 | None:intergenic |
| GGCGTCTCCACCACCGTCGC+CGG | 0.529586 | 3_1:-61361138 | Msa0366480:CDS |
| AAGGTGTGCCTGTTGTTCCA+TGG | 0.533755 | 3_1:+61359003 | None:intergenic |
| AGAGGGGTTCATTGCCTCCC+CGG | 0.534741 | 3_1:+61358721 | None:intergenic |
| ACCGGTTACGGCAATTGCGC+CGG | 0.536367 | 3_1:-61360904 | Msa0366480:CDS |
| AGACATAGCTGCTCGGTGGA+TGG | 0.537247 | 3_1:-61360799 | Msa0366480:CDS |
| ATCAGCTCGGTCGTTTGCAG+GGG | 0.540633 | 3_1:-61358508 | Msa0366480:CDS |
| TCCGCCGCCGGTTAAGGGAT+CGG | 0.540686 | 3_1:+61361035 | None:intergenic |
| ACCGCTAGCCTCGACGAGAT+CGG | 0.544429 | 3_1:-61361006 | Msa0366480:CDS |
| TGTGCAGAATACTTGCAAAC+CGG | 0.544736 | 3_1:-61359764 | Msa0366480:intron |
| GAGGGTGCTTCCCCTATTTG+GGG | 0.547406 | 3_1:+61358237 | None:intergenic |
| TCTTAATGATGCGTTGATGA+AGG | 0.548957 | 3_1:-61358768 | Msa0366480:CDS |
| CCCATATTATAAGATTCAGA+GGG | 0.552973 | 3_1:+61358704 | None:intergenic |
| GACATGTAGTCATCTAATGA+AGG | 0.554193 | 3_1:-61358331 | Msa0366480:three_prime_UTR |
| TCCCATATTATAAGATTCAG+AGG | 0.556236 | 3_1:+61358703 | None:intergenic |
| TGCGCGTTCAAAAGAGAGAA+AGG | 0.557307 | 3_1:-61359733 | Msa0366480:CDS |
| TTAAGGGATCGGAAGGGGAA+AGG | 0.559188 | 3_1:+61361046 | None:intergenic |
| GTGGTGAGAGTGGGGTTCGC+CGG | 0.559617 | 3_1:+61361119 | None:intergenic |
| AGTTGTAGCCTCTGTTTGAA+GGG | 0.560730 | 3_1:+61359674 | None:intergenic |
| ATAAATAAGTCAGTAGGTCA+AGG | 0.566243 | 3_1:+61358387 | None:intergenic |
| GGTGCCGGCGCCGGAACGAG+TGG | 0.566277 | 3_1:-61360877 | Msa0366480:CDS |
| TACATTGACGTTGAGAAGCT+CGG | 0.568054 | 3_1:-61360958 | Msa0366480:CDS |
| TGCCCAATTGACATTATACC+AGG | 0.573298 | 3_1:-61359646 | Msa0366480:intron |
| AGCGGTGGAGGATCCGCCGC+CGG | 0.574294 | 3_1:+61361023 | None:intergenic |
| TTTCGGAGTGGGCGCGACGG+TGG | 0.577554 | 3_1:+61361100 | None:intergenic |
| CCGCCGGTTAAGGGATCGGA+AGG | 0.578667 | 3_1:+61361039 | None:intergenic |
| TATACAAGAGCTTGAACGCA+AGG | 0.583220 | 3_1:-61359703 | Msa0366480:CDS |
| GTTGTTCCATGGATTGCAGA+CGG | 0.584302 | 3_1:+61359014 | None:intergenic |
| TCCGATCTCGTCGAGGCTAG+CGG | 0.585549 | 3_1:+61361005 | None:intergenic |
| GGAAAGGTCCATAATGTCGT+CGG | 0.585789 | 3_1:+61361062 | None:intergenic |
| TTGCAGACGGAGCTTGAGCT+CGG | 0.586207 | 3_1:+61359027 | None:intergenic |
| AAGCTCGGTGGAGTAACAAA+CGG | 0.588976 | 3_1:-61360943 | Msa0366480:CDS |
| GAGCTTCTCAACGTCAATGT+AGG | 0.589340 | 3_1:+61360960 | None:intergenic |
| TAATATTTGGTTTCAACGTG+AGG | 0.593987 | 3_1:-61361322 | Msa0366480:five_prime_UTR |
| GGGCTTGACATCAGTAGCAA+AGG | 0.594432 | 3_1:-61358488 | Msa0366480:CDS |
| TCTCACTTGCAGAGATTGAG+GGG | 0.600065 | 3_1:+61358441 | None:intergenic |
| AGTACAATAAATAAGTCAGT+AGG | 0.604814 | 3_1:+61358381 | None:intergenic |
| GATGATACACATGATCAAAG+AGG | 0.605855 | 3_1:+61358087 | None:intergenic |
| ATGATACACATGATCAAAGA+GGG | 0.613819 | 3_1:+61358088 | None:intergenic |
| CCTTCCGATCCCTTAACCGG+CGG | 0.614531 | 3_1:-61361039 | Msa0366480:CDS |
| GTTCAAGCTCTTGTATATAG+CGG | 0.616568 | 3_1:+61359709 | None:intergenic |
| GCGCGACGGTGGTGAGAGTG+GGG | 0.616993 | 3_1:+61361111 | None:intergenic |
| CAACAGGCACACCTTCGAGA+TGG | 0.617131 | 3_1:-61358995 | Msa0366480:intron |
| GGGATATGCTCCCCAAATAG+GGG | 0.621005 | 3_1:-61358247 | Msa0366480:three_prime_UTR |
| GACGGTAGTTGATTTCGGAG+TGG | 0.621392 | 3_1:+61361088 | None:intergenic |
| CTCACTTGCAGAGATTGAGG+GGG | 0.623339 | 3_1:+61358442 | None:intergenic |
| ATAGGCTTAAGATTGCTACC+GGG | 0.624945 | 3_1:-61358739 | Msa0366480:CDS |
| TGCACCAGATGCAATTTGCA+GGG | 0.627466 | 3_1:-61358679 | Msa0366480:CDS |
| GGTTCGAATTCGAATCAGAC+CGG | 0.629064 | 3_1:-61360922 | Msa0366480:CDS |
| ATAATTCGGCACGTCAGATG+GGG | 0.631949 | 3_1:+61358580 | None:intergenic |
| GATGGGGAGTGACCAAATTG+GGG | 0.632562 | 3_1:+61358596 | None:intergenic |
| GATCTCGTCGAGGCTAGCGG+TGG | 0.633559 | 3_1:+61361008 | None:intergenic |
| AATAGTAGCTACCATCTCGA+AGG | 0.635096 | 3_1:+61358984 | None:intergenic |
| ATGTTACGACACCGAGAACG+AGG | 0.635662 | 3_1:-61360825 | Msa0366480:CDS |
| TGATTTCGGAGTGGGCGCGA+CGG | 0.636065 | 3_1:+61361097 | None:intergenic |
| CGCCGGTTAAGGGATCGGAA+GGG | 0.652220 | 3_1:+61361040 | None:intergenic |
| TGTATGTTCTGGTGACCTGA+AGG | 0.654943 | 3_1:+61358623 | None:intergenic |
| TAGGCTTAAGATTGCTACCG+GGG | 0.656168 | 3_1:-61358738 | Msa0366480:CDS |
| CACGCAATCATATTGAAGCG+TGG | 0.661649 | 3_1:-61358193 | Msa0366480:three_prime_UTR |
| CACGCTTCAATATGATTGCG+TGG | 0.667421 | 3_1:+61358194 | None:intergenic |
| GAGGCATAGACATAGCTGCT+CGG | 0.667993 | 3_1:-61360806 | Msa0366480:CDS |
| CCTGAAGGACCTGAATGTTG+TGG | 0.674365 | 3_1:+61358638 | None:intergenic |
| GCATAGACATAGCTGCTCGG+TGG | 0.678257 | 3_1:-61360803 | Msa0366480:CDS |
| GGTTCAGACCCTTCAAACAG+AGG | 0.679114 | 3_1:-61359682 | Msa0366480:CDS |
| CTTCGGATCCGATCTCGTCG+AGG | 0.680866 | 3_1:+61360998 | None:intergenic |
| GCTTAAGATTGCTACCGGGG+AGG | 0.689095 | 3_1:-61358735 | Msa0366480:CDS |
| CCATATTATAAGATTCAGAG+GGG | 0.694210 | 3_1:+61358705 | None:intergenic |
| AAAGGTCCATAATGTCGTCG+GGG | 0.698449 | 3_1:+61361064 | None:intergenic |
| AGCTCAGCGAGTTTATCAGG+AGG | 0.701452 | 3_1:+61360721 | None:intergenic |
| ACTGCCGCGAATGAAGACGT+TGG | 0.703468 | 3_1:+61361167 | None:intergenic |
| AAATAGGGGAAGCACCCTCG+TGG | 0.716445 | 3_1:-61358233 | Msa0366480:three_prime_UTR |
| GGAACGAGTGGTAATAACGA+CGG | 0.719526 | 3_1:-61360865 | Msa0366480:CDS |
| ATTGACGTTGAGAAGCTCGG+TGG | 0.729210 | 3_1:-61360955 | Msa0366480:CDS |
| ATGTTGCAAAACGATCAGCT+CGG | 0.741818 | 3_1:-61358521 | Msa0366480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCAAAATAATTATATTTTAA+TGG | + | chr3_1:61358770-61358789 | None:intergenic | 10.0% |
| !! | AAATGAAATATTTAATGAAA+AGG | + | chr3_1:61361026-61361045 | None:intergenic | 10.0% |
| !!! | CAACTTTTTTTCTAATTAAT+TGG | - | chr3_1:61358694-61358713 | Msa0366480:CDS | 15.0% |
| !! | AAAATACTAGTAATTTAGAT+TGG | - | chr3_1:61360108-61360127 | Msa0366480:intron | 15.0% |
| !! | TTTAAAAAATTCTGAATGAA+AGG | - | chr3_1:61361175-61361194 | Msa0366480:CDS | 15.0% |
| !! | AAAAGAAGAAGAAAATAGAA+TGG | - | chr3_1:61358104-61358123 | Msa0366480:three_prime_UTR | 20.0% |
| !!! | ATGATGAATAAGAGTTTTTT+TGG | + | chr3_1:61359189-61359208 | None:intergenic | 20.0% |
| !! | TGTTTCAGTTTATTCAAAAA+TGG | + | chr3_1:61359265-61359284 | None:intergenic | 20.0% |
| !!! | AAGTTAGAATATTCCATTTT+TGG | - | chr3_1:61359284-61359303 | Msa0366480:intron | 20.0% |
| !!! | TGATTTGAAATCTAGTTTTT+TGG | - | chr3_1:61359313-61359332 | Msa0366480:intron | 20.0% |
| !!! | TTTCAAAAACTGAATTTTAG+TGG | - | chr3_1:61359494-61359513 | Msa0366480:intron | 20.0% |
| !! | TACACAAACTTATATGTTAT+AGG | - | chr3_1:61360216-61360235 | Msa0366480:intron | 20.0% |
| !!! | ATCAATTATTGATTTTTCAG+AGG | - | chr3_1:61360249-61360268 | Msa0366480:intron | 20.0% |
| !!! | TCAATTATTGATTTTTCAGA+GGG | - | chr3_1:61360250-61360269 | Msa0366480:intron | 20.0% |
| !!! | TAAAATGCCTTTGTTATAAT+TGG | - | chr3_1:61360500-61360519 | Msa0366480:intron | 20.0% |
| !! | ATTCTTGATTGTTTATTCTT+AGG | - | chr3_1:61361059-61361078 | Msa0366480:CDS | 20.0% |
| !! | TTCTTGATTGTTTATTCTTA+GGG | - | chr3_1:61361060-61361079 | Msa0366480:CDS | 20.0% |
| ! | ACGTTGAAACCAAATATTAA+CGG | + | chr3_1:61358004-61358023 | None:intergenic | 25.0% |
| ! | AGTAGTTGATTATGATTGTT+TGG | - | chr3_1:61358848-61358867 | Msa0366480:intron | 25.0% |
| ! | GTAGTTGATTATGATTGTTT+GGG | - | chr3_1:61358849-61358868 | Msa0366480:intron | 25.0% |
| !!! | GATCTTAAGTATTGCTTTTT+TGG | - | chr3_1:61358884-61358903 | Msa0366480:intron | 25.0% |
| ! | TATGATTGTGTAAAGAAACA+TGG | - | chr3_1:61359088-61359107 | Msa0366480:intron | 25.0% |
| ! | CAAATCATCTAAACCAAAAA+TGG | + | chr3_1:61359300-61359319 | None:intergenic | 25.0% |
| ! | AAATGCATTTACAATTACTG+TGG | - | chr3_1:61359355-61359374 | Msa0366480:intron | 25.0% |
| ! | TATAATCAAAAGCTGCAAAA+TGG | + | chr3_1:61359850-61359869 | None:intergenic | 25.0% |
| ! | AACTGCAAATATTTCTTCTT+CGG | - | chr3_1:61359882-61359901 | Msa0366480:intron | 25.0% |
| ! | TTATCTACTAGAAGAAAGAA+AGG | + | chr3_1:61360061-61360080 | None:intergenic | 25.0% |
| !!! | TTGGCAAGTTATTTTAGTAA+TGG | - | chr3_1:61360127-61360146 | Msa0366480:intron | 25.0% |
| ! | GTAAATCATAAGAAAGTGAT+TGG | + | chr3_1:61360374-61360393 | None:intergenic | 25.0% |
| ! | TTGTATCATAAGAAAGTGAT+TGG | + | chr3_1:61360436-61360455 | None:intergenic | 25.0% |
| ! | TACAATTAGATACATGCTTA+AGG | - | chr3_1:61360391-61360410 | Msa0366480:intron | 25.0% |
| ! | AGTACAATAAATAAGTCAGT+AGG | + | chr3_1:61360949-61360968 | None:intergenic | 25.0% |
| ! | CTATAGACAATTGAAGATAA+TGG | + | chr3_1:61360972-61360991 | None:intergenic | 25.0% |
| ! | ACTTTGTATCTTTGTATGTT+GGG | - | chr3_1:61361204-61361223 | Msa0366480:CDS | 25.0% |
| ! | TAATATTTGGTTTCAACGTG+AGG | - | chr3_1:61358005-61358024 | Msa0366480:three_prime_UTR | 30.0% |
| TTGGAATGTCAATGTTGAAA+TGG | - | chr3_1:61358903-61358922 | Msa0366480:intron | 30.0% | |
| TGGAATGTCAATGTTGAAAT+GGG | - | chr3_1:61358904-61358923 | Msa0366480:intron | 30.0% | |
| TAACTATATGTCTAGATGAG+CGG | + | chr3_1:61359052-61359071 | None:intergenic | 30.0% | |
| !! | AACATGGTTTTTGATGATTG+CGG | - | chr3_1:61359104-61359123 | Msa0366480:intron | 30.0% |
| !!! | GTGTTGGATCTTTTGTTTTT+TGG | - | chr3_1:61359755-61359774 | Msa0366480:CDS | 30.0% |
| !! | TATGATAGAAGTGTCTAAGT+TGG | - | chr3_1:61359788-61359807 | Msa0366480:intron | 30.0% |
| !!! | TAGATGAAGTTTTGAACAGT+TGG | + | chr3_1:61359928-61359947 | None:intergenic | 30.0% |
| !!! | CAAGTTATTTTAGTAATGGC+TGG | - | chr3_1:61360131-61360150 | Msa0366480:intron | 30.0% |
| AAACAACTGAAGTCAACAAA+CGG | + | chr3_1:61360192-61360211 | None:intergenic | 30.0% | |
| CCACTAACCAATTATAACAA+AGG | + | chr3_1:61360510-61360529 | None:intergenic | 30.0% | |
| ! | CCTTTGTTATAATTGGTTAG+TGG | - | chr3_1:61360507-61360526 | Msa0366480:intron | 30.0% |
| CCATATTATAAGATTCAGAG+GGG | + | chr3_1:61360625-61360644 | None:intergenic | 30.0% | |
| CCCATATTATAAGATTCAGA+GGG | + | chr3_1:61360626-61360645 | None:intergenic | 30.0% | |
| CCCTCTGAATCTTATAATAT+GGG | - | chr3_1:61360623-61360642 | Msa0366480:intron | 30.0% | |
| TCCCATATTATAAGATTCAG+AGG | + | chr3_1:61360627-61360646 | None:intergenic | 30.0% | |
| AACATACAATTTCCCCAATT+TGG | - | chr3_1:61360719-61360738 | Msa0366480:CDS | 30.0% | |
| ! | GTTTGTTGCAACTGATAATT+CGG | + | chr3_1:61360764-61360783 | None:intergenic | 30.0% |
| ATAAATAAGTCAGTAGGTCA+AGG | + | chr3_1:61360943-61360962 | None:intergenic | 30.0% | |
| CACTTTGTATCTTTGTATGT+TGG | - | chr3_1:61361203-61361222 | Msa0366480:CDS | 30.0% | |
| ATGATACACATGATCAAAGA+GGG | + | chr3_1:61361242-61361261 | None:intergenic | 30.0% | |
| TGTTGTATTGTTCCAATTGA+AGG | - | chr3_1:61361295-61361314 | Msa0366480:five_prime_UTR | 30.0% | |
| AATAACGACGGAGAGAAAAA+CGG | - | chr3_1:61358474-61358493 | Msa0366480:CDS | 35.0% | |
| GAATATGTTTGGAGAGATCA+TGG | - | chr3_1:61358566-61358585 | Msa0366480:CDS | 35.0% | |
| ! | AAAAACCTCTTAGCACGTTT+TGG | + | chr3_1:61358645-61358664 | None:intergenic | 35.0% |
| TTGAATGTCGCGTGTTTAAA+TGG | - | chr3_1:61359409-61359428 | Msa0366480:intron | 35.0% | |
| TGAATGTCGCGTGTTTAAAT+GGG | - | chr3_1:61359410-61359429 | Msa0366480:intron | 35.0% | |
| TTCAAGCTCTTGTATATAGC+GGG | + | chr3_1:61359620-61359639 | None:intergenic | 35.0% | |
| GTTCAAGCTCTTGTATATAG+CGG | + | chr3_1:61359621-61359640 | None:intergenic | 35.0% | |
| GACCTGGTATAATGTCAATT+GGG | + | chr3_1:61359686-61359705 | None:intergenic | 35.0% | |
| TGACCTGGTATAATGTCAAT+TGG | + | chr3_1:61359687-61359706 | None:intergenic | 35.0% | |
| ACAAAAGATCCAACACACAA+AGG | + | chr3_1:61359751-61359770 | None:intergenic | 35.0% | |
| ! | TCTTAATGATGCGTTGATGA+AGG | - | chr3_1:61360559-61360578 | Msa0366480:intron | 35.0% |
| CCCCTCTGAATCTTATAATA+TGG | - | chr3_1:61360622-61360641 | Msa0366480:intron | 35.0% | |
| ! | TTTTCAATGCCACAACATTC+AGG | - | chr3_1:61360680-61360699 | Msa0366480:intron | 35.0% |
| ATTGGGGAAATTGTATGTTC+TGG | + | chr3_1:61360718-61360737 | None:intergenic | 35.0% | |
| TTTGCAACATAGCTGAGATT+TGG | + | chr3_1:61360796-61360815 | None:intergenic | 35.0% | |
| GACATGTAGTCATCTAATGA+AGG | - | chr3_1:61360996-61361015 | Msa0366480:CDS | 35.0% | |
| GATGATACACATGATCAAAG+AGG | + | chr3_1:61361243-61361262 | None:intergenic | 35.0% | |
| CATCTTACATGTCCTTCAAT+TGG | + | chr3_1:61361310-61361329 | None:intergenic | 35.0% | |
| GGTAAAGAAGAGATCGTCTT+CGG | + | chr3_1:61358349-61358368 | None:intergenic | 40.0% | |
| TACATTGACGTTGAGAAGCT+CGG | - | chr3_1:61358369-61358388 | Msa0366480:three_prime_UTR | 40.0% | |
| AATTCGAATCAGACCGGTTA+CGG | - | chr3_1:61358411-61358430 | Msa0366480:exon | 40.0% | |
| ACTTCGACGACGAATATGTT+TGG | - | chr3_1:61358555-61358574 | Msa0366480:CDS | 40.0% | |
| TTGATCCAAAACGTGCTAAG+AGG | - | chr3_1:61358637-61358656 | Msa0366480:CDS | 40.0% | |
| TGGGAATTTGAGTGCATCTT+TGG | - | chr3_1:61358923-61358942 | Msa0366480:intron | 40.0% | |
| TGAAACTACAGCAGCATCTA+TGG | + | chr3_1:61359468-61359487 | None:intergenic | 40.0% | |
| TGTGCAGAATACTTGCAAAC+CGG | - | chr3_1:61359563-61359582 | Msa0366480:intron | 40.0% | |
| TATACAAGAGCTTGAACGCA+AGG | - | chr3_1:61359624-61359643 | Msa0366480:intron | 40.0% | |
| AGTTGTAGCCTCTGTTTGAA+GGG | + | chr3_1:61359656-61359675 | None:intergenic | 40.0% | |
| TGCCCAATTGACATTATACC+AGG | - | chr3_1:61359681-61359700 | Msa0366480:CDS | 40.0% | |
| ! | AGACTAAGTTGAAACTGACC+TGG | + | chr3_1:61359702-61359721 | None:intergenic | 40.0% |
| CCAACACACAAAGGAATTTC+TGG | + | chr3_1:61359742-61359761 | None:intergenic | 40.0% | |
| CCAGAAATTCCTTTGTGTGT+TGG | - | chr3_1:61359739-61359758 | Msa0366480:CDS | 40.0% | |
| TGGTCGCAAATGCTTATACA+AGG | + | chr3_1:61359908-61359927 | None:intergenic | 40.0% | |
| !! | ATTTTTCAGAGGGACACAAC+TGG | - | chr3_1:61360260-61360279 | Msa0366480:intron | 40.0% |
| AATAGTAGCTACCATCTCGA+AGG | + | chr3_1:61360346-61360365 | None:intergenic | 40.0% | |
| ! | CGTTGATGAAGGAAGTTGAT+AGG | - | chr3_1:61360570-61360589 | Msa0366480:intron | 40.0% |
| GATAGGCTTAAGATTGCTAC+CGG | - | chr3_1:61360587-61360606 | Msa0366480:intron | 40.0% | |
| ATAGGCTTAAGATTGCTACC+GGG | - | chr3_1:61360588-61360607 | Msa0366480:intron | 40.0% | |
| !! | AGCTGAGATTTGGTGAGAAT+TGG | + | chr3_1:61360786-61360805 | None:intergenic | 40.0% |
| ATGTTGCAAAACGATCAGCT+CGG | - | chr3_1:61360806-61360825 | Msa0366480:CDS | 40.0% | |
| ! | TTTTTGCGACAAAACCACGA+GGG | + | chr3_1:61361111-61361130 | None:intergenic | 40.0% |
| ! | CATATTGAAGCGTGGCATTT+TGG | - | chr3_1:61361142-61361161 | Msa0366480:CDS | 40.0% |
| ! | ACGTTGGAAGAAGGTGCATT+GGG | + | chr3_1:61358147-61358166 | None:intergenic | 45.0% |
| CGAATGAAGACGTTGGAAGA+AGG | + | chr3_1:61358156-61358175 | None:intergenic | 45.0% | |
| TCTTCCAACGTCTTCATTCG+CGG | - | chr3_1:61358156-61358175 | Msa0366480:three_prime_UTR | 45.0% | |
| ! | ACGGTAGTTGATTTCGGAGT+GGG | + | chr3_1:61358241-61358260 | None:intergenic | 45.0% |
| AAAGGTCCATAATGTCGTCG+GGG | + | chr3_1:61358266-61358285 | None:intergenic | 45.0% | |
| GAAAGGTCCATAATGTCGTC+GGG | + | chr3_1:61358267-61358286 | None:intergenic | 45.0% | |
| GGAAAGGTCCATAATGTCGT+CGG | + | chr3_1:61358268-61358287 | None:intergenic | 45.0% | |
| GAGCTTCTCAACGTCAATGT+AGG | + | chr3_1:61358370-61358389 | None:intergenic | 45.0% | |
| ! | AAGCTCGGTGGAGTAACAAA+CGG | - | chr3_1:61358384-61358403 | Msa0366480:three_prime_UTR | 45.0% |
| GGTTCGAATTCGAATCAGAC+CGG | - | chr3_1:61358405-61358424 | Msa0366480:exon | 45.0% | |
| GTCGTTATTACCACTCGTTC+CGG | + | chr3_1:61358463-61358482 | None:intergenic | 45.0% | |
| GGAACGAGTGGTAATAACGA+CGG | - | chr3_1:61358462-61358481 | Msa0366480:CDS | 45.0% | |
| CTATGTCTATGCCTCGTTCT+CGG | + | chr3_1:61358516-61358535 | None:intergenic | 45.0% | |
| CAAAGCTCAGCGAGTTTATC+AGG | + | chr3_1:61358612-61358631 | None:intergenic | 45.0% | |
| CTGATAAACTCGCTGAGCTT+TGG | - | chr3_1:61358610-61358629 | Msa0366480:CDS | 45.0% | |
| CGGCGAGTTTGGCAAAATAA+CGG | + | chr3_1:61359032-61359051 | None:intergenic | 45.0% | |
| GCGTGTTTAAATGGGATGTC+AGG | - | chr3_1:61359418-61359437 | Msa0366480:intron | 45.0% | |
| TGCGCGTTCAAAAGAGAGAA+AGG | - | chr3_1:61359594-61359613 | Msa0366480:intron | 45.0% | |
| GAGTTGTAGCCTCTGTTTGA+AGG | + | chr3_1:61359657-61359676 | None:intergenic | 45.0% | |
| !! | GTAATGGCTGGTATTGATGC+TGG | - | chr3_1:61360143-61360162 | Msa0366480:intron | 45.0% |
| ! | GTTGTTCCATGGATTGCAGA+CGG | + | chr3_1:61360316-61360335 | None:intergenic | 45.0% |
| TCTGCAATCCATGGAACAAC+AGG | - | chr3_1:61360316-61360335 | Msa0366480:intron | 45.0% | |
| TAGGCTTAAGATTGCTACCG+GGG | - | chr3_1:61360589-61360608 | Msa0366480:intron | 45.0% | |
| ATGCACCAGATGCAATTTGC+AGG | - | chr3_1:61360647-61360666 | Msa0366480:intron | 45.0% | |
| TGCACCAGATGCAATTTGCA+GGG | - | chr3_1:61360648-61360667 | Msa0366480:intron | 45.0% | |
| TTGACCCTGCAAATTGCATC+TGG | + | chr3_1:61360655-61360674 | None:intergenic | 45.0% | |
| TGTATGTTCTGGTGACCTGA+AGG | + | chr3_1:61360707-61360726 | None:intergenic | 45.0% | |
| AGATGGGGAGTGACCAAATT+GGG | + | chr3_1:61360735-61360754 | None:intergenic | 45.0% | |
| ATAATTCGGCACGTCAGATG+GGG | + | chr3_1:61360750-61360769 | None:intergenic | 45.0% | |
| GATAATTCGGCACGTCAGAT+GGG | + | chr3_1:61360751-61360770 | None:intergenic | 45.0% | |
| TGATAATTCGGCACGTCAGA+TGG | + | chr3_1:61360752-61360771 | None:intergenic | 45.0% | |
| TCTCACTTGCAGAGATTGAG+GGG | + | chr3_1:61360889-61360908 | None:intergenic | 45.0% | |
| CTCTCACTTGCAGAGATTGA+GGG | + | chr3_1:61360890-61360909 | None:intergenic | 45.0% | |
| ACTCTCACTTGCAGAGATTG+AGG | + | chr3_1:61360891-61360910 | None:intergenic | 45.0% | |
| GTCAGTAGGTCAAGGAGTTT+AGG | + | chr3_1:61360935-61360954 | None:intergenic | 45.0% | |
| TAGGGATATGCTCCCCAAAT+AGG | - | chr3_1:61361078-61361097 | Msa0366480:CDS | 45.0% | |
| AGGGATATGCTCCCCAAATA+GGG | - | chr3_1:61361079-61361098 | Msa0366480:CDS | 45.0% | |
| ! | CTTTTTGCGACAAAACCACG+AGG | + | chr3_1:61361112-61361131 | None:intergenic | 45.0% |
| CACGCTTCAATATGATTGCG+TGG | + | chr3_1:61361136-61361155 | None:intergenic | 45.0% | |
| CACGCAATCATATTGAAGCG+TGG | - | chr3_1:61361134-61361153 | Msa0366480:CDS | 45.0% | |
| ! | GACGTTGGAAGAAGGTGCAT+TGG | + | chr3_1:61358148-61358167 | None:intergenic | 50.0% |
| TTCATTCGCGGCAGTGTCAA+CGG | - | chr3_1:61358168-61358187 | Msa0366480:three_prime_UTR | 50.0% | |
| ! | GACGGTAGTTGATTTCGGAG+TGG | + | chr3_1:61358242-61358261 | None:intergenic | 50.0% |
| ! | GGGGAGACGGTAGTTGATTT+CGG | + | chr3_1:61358247-61358266 | None:intergenic | 50.0% |
| TTAAGGGATCGGAAGGGGAA+AGG | + | chr3_1:61358284-61358303 | None:intergenic | 50.0% | |
| ATTGACGTTGAGAAGCTCGG+TGG | - | chr3_1:61358372-61358391 | Msa0366480:three_prime_UTR | 50.0% | |
| ATGTTACGACACCGAGAACG+AGG | - | chr3_1:61358502-61358521 | Msa0366480:CDS | 50.0% | |
| GAGGCATAGACATAGCTGCT+CGG | - | chr3_1:61358521-61358540 | Msa0366480:CDS | 50.0% | |
| AGCTCAGCGAGTTTATCAGG+AGG | + | chr3_1:61358609-61358628 | None:intergenic | 50.0% | |
| AGAGTCACGATGAGTTGTCG+TGG | - | chr3_1:61358964-61358983 | Msa0366480:intron | 50.0% | |
| GGTTCAGACCCTTCAAACAG+AGG | - | chr3_1:61359645-61359664 | Msa0366480:intron | 50.0% | |
| AAGGTGTGCCTGTTGTTCCA+TGG | + | chr3_1:61360327-61360346 | None:intergenic | 50.0% | |
| CCTGAAGGACCTGAATGTTG+TGG | + | chr3_1:61360692-61360711 | None:intergenic | 50.0% | |
| CCACAACATTCAGGTCCTTC+AGG | - | chr3_1:61360689-61360708 | Msa0366480:intron | 50.0% | |
| GATGGGGAGTGACCAAATTG+GGG | + | chr3_1:61360734-61360753 | None:intergenic | 50.0% | |
| CAGATGGGGAGTGACCAAAT+TGG | + | chr3_1:61360736-61360755 | None:intergenic | 50.0% | |
| GGGCTTGACATCAGTAGCAA+AGG | - | chr3_1:61360839-61360858 | Msa0366480:CDS | 50.0% | |
| GGGGGTTTCAGATTTCACGA+GGG | + | chr3_1:61360870-61360889 | None:intergenic | 50.0% | |
| AGGGGGTTTCAGATTTCACG+AGG | + | chr3_1:61360871-61360890 | None:intergenic | 50.0% | |
| CTCACTTGCAGAGATTGAGG+GGG | + | chr3_1:61360888-61360907 | None:intergenic | 50.0% | |
| GGGATATGCTCCCCAAATAG+GGG | - | chr3_1:61361080-61361099 | Msa0366480:CDS | 50.0% | |
| ACTGCCGCGAATGAAGACGT+TGG | + | chr3_1:61358163-61358182 | None:intergenic | 55.0% | |
| CCATAATGTCGTCGGGGAGA+CGG | + | chr3_1:61358260-61358279 | None:intergenic | 55.0% | |
| TCCCCTTCCGATCCCTTAAC+CGG | - | chr3_1:61358285-61358304 | Msa0366480:three_prime_UTR | 55.0% | |
| GCATAGACATAGCTGCTCGG+TGG | - | chr3_1:61358524-61358543 | Msa0366480:CDS | 55.0% | |
| ! | AGACATAGCTGCTCGGTGGA+TGG | - | chr3_1:61358528-61358547 | Msa0366480:CDS | 55.0% |
| GTCTAGATGAGCGGCGAGTT+TGG | + | chr3_1:61359043-61359062 | None:intergenic | 55.0% | |
| TTGAACGCGCAGCAGATTGC+CGG | + | chr3_1:61359585-61359604 | None:intergenic | 55.0% | |
| TTGCAGACGGAGCTTGAGCT+CGG | + | chr3_1:61360303-61360322 | None:intergenic | 55.0% | |
| CAAGCTCCGTCTGCAATCCA+TGG | - | chr3_1:61360307-61360326 | Msa0366480:intron | 55.0% | |
| CAACAGGCACACCTTCGAGA+TGG | - | chr3_1:61360332-61360351 | Msa0366480:intron | 55.0% | |
| GCTTAAGATTGCTACCGGGG+AGG | - | chr3_1:61360592-61360611 | Msa0366480:intron | 55.0% | |
| GATCAGCTCGGTCGTTTGCA+GGG | - | chr3_1:61360818-61360837 | Msa0366480:CDS | 55.0% | |
| ATCAGCTCGGTCGTTTGCAG+GGG | - | chr3_1:61360819-61360838 | Msa0366480:CDS | 55.0% | |
| !! | GAGGGTGCTTCCCCTATTTG+GGG | + | chr3_1:61361093-61361112 | None:intergenic | 55.0% |
| !! | CGAGGGTGCTTCCCCTATTT+GGG | + | chr3_1:61361094-61361113 | None:intergenic | 55.0% |
| !! | ACGAGGGTGCTTCCCCTATT+TGG | + | chr3_1:61361095-61361114 | None:intergenic | 55.0% |
| !! | AAATAGGGGAAGCACCCTCG+TGG | - | chr3_1:61361094-61361113 | Msa0366480:CDS | 55.0% |
| !!! | AGCGTGGCATTTTGGTGTCG+TGG | - | chr3_1:61361150-61361169 | Msa0366480:CDS | 55.0% |
| !!! | GCGTGGCATTTTGGTGTCGT+GGG | - | chr3_1:61361151-61361170 | Msa0366480:CDS | 55.0% |
| TGATTTCGGAGTGGGCGCGA+CGG | + | chr3_1:61358233-61358252 | None:intergenic | 60.0% | |
| CCGTCTCCCCGACGACATTA+TGG | - | chr3_1:61358257-61358276 | Msa0366480:three_prime_UTR | 60.0% | |
| GCCGGTTAAGGGATCGGAAG+GGG | + | chr3_1:61358289-61358308 | None:intergenic | 60.0% | |
| ! | CGCCGGTTAAGGGATCGGAA+GGG | + | chr3_1:61358290-61358309 | None:intergenic | 60.0% |
| CCTTCCGATCCCTTAACCGG+CGG | - | chr3_1:61358288-61358307 | Msa0366480:three_prime_UTR | 60.0% | |
| ! | ACCGCTAGCCTCGACGAGAT+CGG | - | chr3_1:61358321-61358340 | Msa0366480:three_prime_UTR | 60.0% |
| TCCGATCTCGTCGAGGCTAG+CGG | + | chr3_1:61358325-61358344 | None:intergenic | 60.0% | |
| CTTCGGATCCGATCTCGTCG+AGG | + | chr3_1:61358332-61358351 | None:intergenic | 60.0% | |
| ACCGGTTACGGCAATTGCGC+CGG | - | chr3_1:61358423-61358442 | Msa0366480:exon | 60.0% | |
| ACCGGCGCAATTGCCGTAAC+CGG | + | chr3_1:61358427-61358446 | None:intergenic | 60.0% | |
| ATTACCACTCGTTCCGGCGC+CGG | + | chr3_1:61358457-61358476 | None:intergenic | 60.0% | |
| AGAGGGGTTCATTGCCTCCC+CGG | + | chr3_1:61360609-61360628 | None:intergenic | 60.0% | |
| CGATCAGCTCGGTCGTTTGC+AGG | - | chr3_1:61360817-61360836 | Msa0366480:CDS | 60.0% | |
| GTGGTGAGAGTGGGGTTCGC+CGG | + | chr3_1:61358211-61358230 | None:intergenic | 65.0% | |
| ! | CCGCCGGTTAAGGGATCGGA+AGG | + | chr3_1:61358291-61358310 | None:intergenic | 65.0% |
| TCCGATCCCTTAACCGGCGG+CGG | - | chr3_1:61358291-61358310 | Msa0366480:three_prime_UTR | 65.0% | |
| ! | TCCGCCGCCGGTTAAGGGAT+CGG | + | chr3_1:61358295-61358314 | None:intergenic | 65.0% |
| ! | GAGGATCCGCCGCCGGTTAA+GGG | + | chr3_1:61358300-61358319 | None:intergenic | 65.0% |
| GATCTCGTCGAGGCTAGCGG+TGG | + | chr3_1:61358322-61358341 | None:intergenic | 65.0% | |
| ! | TACGGCAATTGCGCCGGTGC+CGG | - | chr3_1:61358429-61358448 | Msa0366480:CDS | 65.0% |
| AGAGTGGGGTTCGCCGGCGA+CGG | + | chr3_1:61358205-61358224 | None:intergenic | 70.0% | |
| GCGCGACGGTGGTGAGAGTG+GGG | + | chr3_1:61358219-61358238 | None:intergenic | 70.0% | |
| GGCGCGACGGTGGTGAGAGT+GGG | + | chr3_1:61358220-61358239 | None:intergenic | 70.0% | |
| TTTCGGAGTGGGCGCGACGG+TGG | + | chr3_1:61358230-61358249 | None:intergenic | 70.0% | |
| ! | GGAGGATCCGCCGCCGGTTA+AGG | + | chr3_1:61358301-61358320 | None:intergenic | 70.0% |
| CTCGTCGAGGCTAGCGGTGG+AGG | + | chr3_1:61358319-61358338 | None:intergenic | 70.0% | |
| !! | AATTGCGCCGGTGCCGGTGC+CGG | - | chr3_1:61358435-61358454 | Msa0366480:CDS | 70.0% |
| GGCGTCTCCACCACCGTCGC+CGG | - | chr3_1:61358189-61358208 | Msa0366480:three_prime_UTR | 75.0% | |
| GGGCGCGACGGTGGTGAGAG+TGG | + | chr3_1:61358221-61358240 | None:intergenic | 75.0% | |
| AGCGGTGGAGGATCCGCCGC+CGG | + | chr3_1:61358307-61358326 | None:intergenic | 75.0% | |
| !! | ACTCGTTCCGGCGCCGGCAC+CGG | + | chr3_1:61358451-61358470 | None:intergenic | 75.0% |
| ! | GGGTTCGCCGGCGACGGTGG+TGG | + | chr3_1:61358199-61358218 | None:intergenic | 80.0% |
| ! | GTGGGGTTCGCCGGCGACGG+TGG | + | chr3_1:61358202-61358221 | None:intergenic | 80.0% |
| !!! | GGTGCCGGCGCCGGAACGAG+TGG | - | chr3_1:61358450-61358469 | Msa0366480:CDS | 80.0% |
| !!! | TCCGGCGCCGGCACCGGCAC+CGG | + | chr3_1:61358445-61358464 | None:intergenic | 85.0% |
| !!! | GCCGGTGCCGGTGCCGGCGC+CGG | - | chr3_1:61358441-61358460 | Msa0366480:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61357999 | 61361350 | 61357999 | ID=Msa0366480;Name=Msa0366480 |
| chr3_1 | mRNA | 61357999 | 61361350 | 61357999 | ID=Msa0366480-mRNA-1;Parent=Msa0366480;Name=Msa0366480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=124|1|1|1|1|1|4|425|373 |
| chr3_1 | exon | 61357999 | 61358791 | 61357999 | ID=Msa0366480-mRNA-1:exon:11876;Parent=Msa0366480-mRNA-1 |
| chr3_1 | exon | 61358996 | 61359080 | 61358996 | ID=Msa0366480-mRNA-1:exon:11875;Parent=Msa0366480-mRNA-1 |
| chr3_1 | exon | 61359647 | 61359779 | 61359647 | ID=Msa0366480-mRNA-1:exon:11874;Parent=Msa0366480-mRNA-1 |
| chr3_1 | exon | 61360691 | 61361350 | 61360691 | ID=Msa0366480-mRNA-1:exon:11873;Parent=Msa0366480-mRNA-1 |
| chr3_1 | five_prime_UTR | 61361227 | 61361350 | 61361227 | ID=Msa0366480-mRNA-1:five_prime_utr;Parent=Msa0366480-mRNA-1 |
| chr3_1 | CDS | 61360691 | 61361226 | 61360691 | ID=Msa0366480-mRNA-1:cds;Parent=Msa0366480-mRNA-1 |
| chr3_1 | CDS | 61359647 | 61359779 | 61359647 | ID=Msa0366480-mRNA-1:cds;Parent=Msa0366480-mRNA-1 |
| chr3_1 | CDS | 61358996 | 61359080 | 61358996 | ID=Msa0366480-mRNA-1:cds;Parent=Msa0366480-mRNA-1 |
| chr3_1 | CDS | 61358424 | 61358791 | 61358424 | ID=Msa0366480-mRNA-1:cds;Parent=Msa0366480-mRNA-1 |
| chr3_1 | three_prime_UTR | 61357999 | 61358423 | 61357999 | ID=Msa0366480-mRNA-1:three_prime_utr;Parent=Msa0366480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
