Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370910 | XP_013460983.1 | 93.342 | 751 | 34 | 2 | 62 | 796 | 1 | 751 | 0.0 | 1417 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370910 | sp|Q94A08|RFS2_ARATH | 49.155 | 769 | 332 | 10 | 62 | 783 | 1 | 757 | 0.0 | 775 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370910 | A0A072UZM9 | 93.342 | 751 | 34 | 2 | 62 | 796 | 1 | 751 | 0.0 | 1417 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0046950 | Msa0370910 | 0.808073 | 3.705049e-50 | -8.615850e-47 |
Msa0370910 | Msa0460350 | 0.816133 | 6.471968e-52 | -8.615850e-47 |
Msa0370910 | Msa0510520 | 0.939139 | 2.098922e-99 | -8.615850e-47 |
Msa0370910 | Msa0838640 | 0.804443 | 2.155384e-49 | -8.615850e-47 |
Msa0370910 | Msa1129420 | 0.806007 | 1.013865e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370910 | MtrunA17_Chr3g0116641 | 93.342 | 751 | 34 | 2 | 62 | 796 | 1 | 751 | 0.0 | 1417 |
Msa0370910 | MtrunA17_Chr1g0173521 | 47.661 | 791 | 360 | 8 | 22 | 783 | 16 | 781 | 0.0 | 717 |
Msa0370910 | MtrunA17_Chr5g0447201 | 47.004 | 751 | 362 | 9 | 62 | 783 | 1 | 744 | 0.0 | 701 |
Msa0370910 | MtrunA17_Chr4g0064311 | 44.667 | 750 | 360 | 11 | 62 | 784 | 98 | 819 | 0.0 | 647 |
Msa0370910 | MtrunA17_Chr7g0257731 | 49.333 | 600 | 260 | 6 | 225 | 783 | 2 | 598 | 0.0 | 584 |
Msa0370910 | MtrunA17_Chr3g0117141 | 36.696 | 793 | 418 | 17 | 60 | 796 | 22 | 786 | 2.84e-172 | 516 |
Msa0370910 | MtrunA17_Chr6g0449521 | 37.931 | 754 | 390 | 18 | 70 | 772 | 37 | 763 | 9.97e-166 | 499 |
Msa0370910 | MtrunA17_Chr4g0058701 | 35.467 | 781 | 426 | 16 | 69 | 796 | 23 | 778 | 9.67e-164 | 493 |
Msa0370910 | MtrunA17_Chr1g0201161 | 32.707 | 639 | 319 | 13 | 84 | 633 | 58 | 674 | 1.69e-100 | 332 |
Msa0370910 | MtrunA17_Chr1g0201161 | 28.856 | 201 | 104 | 8 | 624 | 796 | 734 | 923 | 7.59e-13 | 72.4 |
Msa0370910 | MtrunA17_Chr7g0267991 | 37.584 | 447 | 239 | 9 | 367 | 783 | 407 | 843 | 6.60e-86 | 291 |
Msa0370910 | MtrunA17_Chr7g0267991 | 34.221 | 263 | 149 | 3 | 84 | 340 | 54 | 298 | 1.58e-40 | 160 |
Msa0370910 | MtrunA17_Chr8g0380141 | 36.567 | 402 | 225 | 9 | 295 | 670 | 312 | 709 | 9.86e-72 | 249 |
Msa0370910 | MtrunA17_Chr8g0380141 | 33.083 | 266 | 148 | 4 | 84 | 340 | 53 | 297 | 2.33e-40 | 159 |
Msa0370910 | MtrunA17_Chr7g0270181 | 35.260 | 346 | 197 | 5 | 455 | 778 | 4 | 344 | 8.58e-60 | 207 |
Msa0370910 | MtrunA17_Chr5g0427081 | 44.521 | 146 | 60 | 4 | 571 | 697 | 7 | 150 | 3.35e-31 | 120 |
Msa0370910 | MtrunA17_Chr7g0257741 | 38.961 | 154 | 80 | 2 | 62 | 211 | 1 | 144 | 5.72e-30 | 115 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370910 | AT3G57520.1 | 49.155 | 769 | 332 | 10 | 62 | 783 | 1 | 757 | 0.0 | 775 |
Msa0370910 | AT3G57520.2 | 50.901 | 666 | 290 | 8 | 62 | 702 | 1 | 654 | 0.0 | 709 |
Msa0370910 | AT1G55740.1 | 47.936 | 751 | 350 | 9 | 62 | 783 | 1 | 739 | 0.0 | 676 |
Msa0370910 | AT3G57520.3 | 53.710 | 566 | 245 | 5 | 62 | 622 | 1 | 554 | 0.0 | 649 |
Msa0370910 | AT5G20250.3 | 44.400 | 750 | 373 | 12 | 62 | 784 | 1 | 733 | 0.0 | 634 |
Msa0370910 | AT5G20250.1 | 44.400 | 750 | 373 | 12 | 62 | 784 | 1 | 733 | 0.0 | 634 |
Msa0370910 | AT5G20250.4 | 44.341 | 751 | 374 | 12 | 61 | 784 | 95 | 828 | 0.0 | 634 |
Msa0370910 | AT5G20250.2 | 44.400 | 750 | 373 | 12 | 62 | 784 | 1 | 733 | 0.0 | 634 |
Msa0370910 | AT5G40390.1 | 37.404 | 778 | 420 | 16 | 69 | 796 | 23 | 783 | 4.33e-171 | 513 |
Msa0370910 | AT4G01970.1 | 35.683 | 454 | 250 | 12 | 363 | 781 | 412 | 858 | 3.08e-80 | 276 |
Msa0370910 | AT4G01970.1 | 35.211 | 284 | 142 | 4 | 82 | 341 | 49 | 314 | 5.67e-44 | 171 |
Msa0370910 | AT4G01970.2 | 35.683 | 454 | 250 | 12 | 363 | 781 | 459 | 905 | 6.10e-80 | 276 |
Msa0370910 | AT4G01970.2 | 35.211 | 284 | 142 | 4 | 82 | 341 | 96 | 361 | 6.00e-44 | 171 |
Find 182 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTACAGTCTGCTGAAAATT+TGG | 0.133304 | 3_1:+68842727 | Msa0370910:intron |
CTAATGTTTCTATCAAATTT+TGG | 0.150455 | 3_1:-68841733 | None:intergenic |
GAGTCTTTGATTAGCTTAAA+TGG | 0.186340 | 3_1:-68840685 | None:intergenic |
CCGACACACTTAACCATTTC+AGG | 0.207056 | 3_1:+68842834 | Msa0370910:CDS |
GCCTTCACCATCAAGTTTAA+TGG | 0.214336 | 3_1:-68843667 | None:intergenic |
AATGAAGTTGAGAATGTTAA+AGG | 0.234661 | 3_1:-68839792 | None:intergenic |
TTTCTGTCATCTTGAAAATA+AGG | 0.241361 | 3_1:+68840834 | Msa0370910:CDS |
AAGAAGGTTGGTTAATTTAT+AGG | 0.254326 | 3_1:-68839709 | None:intergenic |
ACAACTCTGATTCAATTTAC+AGG | 0.265456 | 3_1:+68841864 | Msa0370910:CDS |
GCATGCTTTAGCTGGTTATT+GGG | 0.271441 | 3_1:+68841490 | Msa0370910:CDS |
CCGGTACATCTTGATTTGTT+TGG | 0.294036 | 3_1:+68840862 | Msa0370910:CDS |
CATATGTATAAACAGGTATT+TGG | 0.294074 | 3_1:+68843420 | Msa0370910:intron |
GGCATGCTTTAGCTGGTTAT+TGG | 0.294226 | 3_1:+68841489 | Msa0370910:CDS |
GGCAGAGGATGTGGCCGATT+TGG | 0.301018 | 3_1:+68843558 | Msa0370910:CDS |
AGAAGGTTGGTTAATTTATA+GGG | 0.301460 | 3_1:-68839708 | None:intergenic |
TTTCTAATGACATAGGATAT+TGG | 0.311195 | 3_1:+68840795 | Msa0370910:intron |
GTTGTTTCACCTGTTTCTGC+TGG | 0.312030 | 3_1:+68839957 | Msa0370910:CDS |
CTTTATTTAGAGTCAAAATA+TGG | 0.313807 | 3_1:+68840255 | Msa0370910:CDS |
GTCTACAAACATGACTATTT+CGG | 0.314200 | 3_1:+68839860 | Msa0370910:CDS |
TACTGGGTTCCTTCAATTAT+CGG | 0.317199 | 3_1:-68841152 | None:intergenic |
ATCCAGTAATGGATGGTAAA+AGG | 0.326549 | 3_1:+68842617 | Msa0370910:CDS |
AACAAGGCTGATAGACATTA+AGG | 0.327395 | 3_1:+68841263 | Msa0370910:CDS |
GAGGCAGTGTTTGTAAATTC+AGG | 0.331115 | 3_1:+68840655 | Msa0370910:CDS |
CAAAATTTGATAGAAACATT+AGG | 0.332651 | 3_1:+68841734 | Msa0370910:CDS |
TTGATAGAAACATTAGGTTC+AGG | 0.347566 | 3_1:+68841740 | Msa0370910:CDS |
TTGCTTGACATGTACAATTC+AGG | 0.347876 | 3_1:+68843471 | Msa0370910:CDS |
CATATGCAATTTGCGCCAAT+TGG | 0.348061 | 3_1:+68843447 | Msa0370910:CDS |
GTGGTTTCCGATGGTTTCAT+TGG | 0.349098 | 3_1:-68842810 | None:intergenic |
AAAGGATAGTTGAATTTGTT+AGG | 0.360007 | 3_1:-68839774 | None:intergenic |
TATATACAGTATCTCCAATC+AGG | 0.361816 | 3_1:+68843309 | Msa0370910:CDS |
ACAAGAATCGACTTTCGCTT+TGG | 0.388023 | 3_1:-68843736 | None:intergenic |
TAATCCATCTTCAGAGTTGT+AGG | 0.389057 | 3_1:-68843640 | None:intergenic |
AACCACTTTCAACGCAGAAT+TGG | 0.394094 | 3_1:-68840490 | None:intergenic |
GAGAGATATTTGTGCCAGAC+TGG | 0.399133 | 3_1:+68842092 | Msa0370910:CDS |
GTATGCTTACGATAGGAGTT+AGG | 0.400367 | 3_1:-68843779 | None:intergenic |
GTGGAACCAGCTGACTGAAT+TGG | 0.406736 | 3_1:-68841569 | None:intergenic |
ACATGTAAGGTTTGAAATGT+TGG | 0.411578 | 3_1:-68842037 | None:intergenic |
ATTTGAGGTGGGGTGGAAGA+AGG | 0.415764 | 3_1:-68839725 | None:intergenic |
GTTTGAAATGTTGGTTCCCT+TGG | 0.415913 | 3_1:-68842028 | None:intergenic |
AATAAGCTGACTGGGGTGAT+AGG | 0.416739 | 3_1:+68842756 | Msa0370910:CDS |
TTGGCCAGCTTCCTGCTCCT+TGG | 0.418002 | 3_1:-68842791 | None:intergenic |
CATGCTGCAGCAAGAGCAAT+AGG | 0.418956 | 3_1:+68842248 | Msa0370910:CDS |
TGTCCATGGCTATATCTCTA+AGG | 0.420570 | 3_1:-68841598 | None:intergenic |
TTACTGACCATTAAACTTGA+TGG | 0.421279 | 3_1:+68843660 | Msa0370910:CDS |
AGATATAGCCATGGACAGCC+TGG | 0.423263 | 3_1:+68841604 | Msa0370910:CDS |
AAGTTTATCATCGTTGATGA+TGG | 0.424891 | 3_1:+68841089 | Msa0370910:CDS |
GTCTTTAATTGCCAAGGAGC+AGG | 0.431429 | 3_1:+68842780 | Msa0370910:CDS |
TAGAAGAATTGTCCTGCATA+AGG | 0.432028 | 3_1:+68843502 | Msa0370910:CDS |
AAAGCAGACCCAGCAGAAAC+AGG | 0.434640 | 3_1:-68839966 | None:intergenic |
GAACAAATTCTTTACCTCTT+CGG | 0.436592 | 3_1:-68843821 | None:intergenic |
TGAATTGGATATACAAGCTT+CGG | 0.437132 | 3_1:-68841554 | None:intergenic |
ATTTGTTTGGATGGTGCACT+TGG | 0.437449 | 3_1:+68840875 | Msa0370910:CDS |
GAGTTTCTTCAAGAGGTTGC+TGG | 0.438427 | 3_1:+68842879 | Msa0370910:CDS |
GAGGTGGGGTGGAAGAAGGT+TGG | 0.439759 | 3_1:-68839721 | None:intergenic |
GGTGAAGGACGATTGCCTTA+TGG | 0.440385 | 3_1:+68839893 | Msa0370910:CDS |
GACTATTTCGGTTGTACCTA+AGG | 0.440852 | 3_1:+68839872 | Msa0370910:CDS |
AGGAAAATTAGAAGTATCCT+TGG | 0.441630 | 3_1:+68843268 | Msa0370910:CDS |
GAAGAGTCTGCTCTTAAGAC+AGG | 0.452435 | 3_1:+68840353 | Msa0370910:CDS |
AGCTACTGACGCAACATGTA+AGG | 0.454810 | 3_1:-68842050 | None:intergenic |
ATTCAGTCAGCTGGTTCCAC+AGG | 0.456336 | 3_1:+68841572 | Msa0370910:CDS |
TGATAGAAACATTAGGTTCA+GGG | 0.457902 | 3_1:+68841741 | Msa0370910:CDS |
GTCATAACACTAACCCTGAT+TGG | 0.461560 | 3_1:-68843323 | None:intergenic |
TTGTTTCACCTGTTTCTGCT+GGG | 0.461766 | 3_1:+68839958 | Msa0370910:CDS |
CTTGCTAGCTGTGGCGTCGA+TGG | 0.462315 | 3_1:+68841695 | Msa0370910:CDS |
TTTGTGCTTTGACAAACAAC+TGG | 0.463280 | 3_1:-68839626 | None:intergenic |
CTGGTGATGGTTGTATCGTA+TGG | 0.466048 | 3_1:-68839607 | None:intergenic |
ACATGACGAGAACTAGGAAT+AGG | 0.471380 | 3_1:-68840005 | None:intergenic |
TACATGTGGCATGCTTTAGC+TGG | 0.471549 | 3_1:+68841482 | Msa0370910:CDS |
AGGCAGTGTTTGTAAATTCA+GGG | 0.472464 | 3_1:+68840656 | Msa0370910:CDS |
GTATATCCAATTCAGTCAGC+TGG | 0.476978 | 3_1:+68841563 | Msa0370910:CDS |
GCTCTCAAGACTGATCCATT+TGG | 0.477025 | 3_1:-68842553 | None:intergenic |
GACGTGTTTCATTAACAAAA+CGG | 0.477430 | 3_1:+68841771 | Msa0370910:CDS |
ATTGCCAAGGAGCAGGAAGC+TGG | 0.478211 | 3_1:+68842787 | Msa0370910:CDS |
AGGCAATCGTCCTTCACCTT+AGG | 0.479610 | 3_1:-68839888 | None:intergenic |
ATGACACGTTCTCATTCTAA+AGG | 0.486566 | 3_1:+68843895 | Msa0370910:three_prime_UTR |
TCACGTTGCCCCTCACCATA+AGG | 0.490694 | 3_1:-68839908 | None:intergenic |
CATTGGAGTACGCTCCAAAT+CGG | 0.495713 | 3_1:-68843572 | None:intergenic |
AAGTTGCTTGGTGGACATGC+AGG | 0.496836 | 3_1:+68843605 | Msa0370910:CDS |
AGAAGCAATTGAGTTTCCAT+TGG | 0.497684 | 3_1:-68840317 | None:intergenic |
CTCCAATTCTGCGTTGAAAG+TGG | 0.497807 | 3_1:+68840488 | Msa0370910:CDS |
ACTTGGAACATGTCCCAGTC+TGG | 0.497856 | 3_1:-68842106 | None:intergenic |
GTCTTGAGAGCAAGATATGC+TGG | 0.497867 | 3_1:+68842565 | Msa0370910:CDS |
TCTTCACCCTCGGCACTCTC+CGG | 0.499147 | 3_1:+68840027 | Msa0370910:CDS |
CATGCTTTAGCTGGTTATTG+GGG | 0.500822 | 3_1:+68841491 | Msa0370910:CDS |
AACATCAAAGGCAGAGGATG+TGG | 0.504719 | 3_1:+68843549 | Msa0370910:CDS |
GAGATTGTTGCAAGAACTGT+TGG | 0.507789 | 3_1:-68841313 | None:intergenic |
TACATCTTGATTTGTTTGGA+TGG | 0.508853 | 3_1:+68840866 | Msa0370910:CDS |
AAGAAGCTAGTACTACCAAA+TGG | 0.512223 | 3_1:+68842538 | Msa0370910:CDS |
TCATCAACGATGATAAACTT+TGG | 0.518122 | 3_1:-68841086 | None:intergenic |
TGCAGTAGCAAGAGCATCTG+AGG | 0.518388 | 3_1:+68841997 | Msa0370910:CDS |
GTGAAGACATGACGAGAACT+AGG | 0.518804 | 3_1:-68840011 | None:intergenic |
TTTGTTTCAAGATCCAGTAA+TGG | 0.520531 | 3_1:+68842606 | Msa0370910:CDS |
TGAAGAAACTCAACATCAAG+TGG | 0.522242 | 3_1:-68842867 | None:intergenic |
ATTTGCAGCATCCCTTATGC+AGG | 0.524518 | 3_1:-68843514 | None:intergenic |
GCTTTAGCTGGTTATTGGGG+AGG | 0.526230 | 3_1:+68841494 | Msa0370910:CDS |
TGGTGATGGTTGTATCGTAT+GGG | 0.526403 | 3_1:-68839606 | None:intergenic |
AGAAGAATTGTCCTGCATAA+GGG | 0.528389 | 3_1:+68843503 | Msa0370910:CDS |
GGAAACTCAATTGCTTCTAG+TGG | 0.531099 | 3_1:+68840322 | Msa0370910:CDS |
TACATGTCAAGCAATCCAAT+TGG | 0.532755 | 3_1:-68843462 | None:intergenic |
TCTCGTCATGTCTTCACCCT+CGG | 0.534008 | 3_1:+68840017 | Msa0370910:CDS |
GAAGGCGAACCGATAATTGA+AGG | 0.534207 | 3_1:+68841143 | Msa0370910:CDS |
GCGTTTCGCGCAACTTTGCA+AGG | 0.535399 | 3_1:+68840449 | Msa0370910:CDS |
TGATGTTGAGTTTCTTCAAG+AGG | 0.537617 | 3_1:+68842872 | Msa0370910:CDS |
CTTGGTGGACATGCAGGAGG+AGG | 0.539473 | 3_1:+68843611 | Msa0370910:CDS |
GGTGGATGATACCACGTGTT+GGG | 0.540503 | 3_1:+68840276 | Msa0370910:CDS |
TGGAACTTGAATAAGCTGAC+TGG | 0.542627 | 3_1:+68842747 | Msa0370910:CDS |
TTATCATCGTTGATGATGGA+TGG | 0.546645 | 3_1:+68841093 | Msa0370910:CDS |
CCAAACAAATCAAGATGTAC+CGG | 0.548377 | 3_1:-68840862 | None:intergenic |
CACAGTTATCTTGCTAGCTG+TGG | 0.548683 | 3_1:+68841686 | Msa0370910:CDS |
GGAACTTGAATAAGCTGACT+GGG | 0.554164 | 3_1:+68842748 | Msa0370910:CDS |
TGATAGAGTCAATAAAATCA+TGG | 0.554811 | 3_1:-68841335 | None:intergenic |
TTGTATAATTTGAGGTGGGG+TGG | 0.555423 | 3_1:-68839732 | None:intergenic |
AAATCCACAAGGAATAAAAG+AGG | 0.555557 | 3_1:+68840918 | Msa0370910:CDS |
GGACGATTGCCTTATGGTGA+GGG | 0.555694 | 3_1:+68839899 | Msa0370910:CDS |
AATTTGAAGTTCAGAAGTGA+TGG | 0.558269 | 3_1:+68841288 | Msa0370910:CDS |
TGAATTGTATAATTTGAGGT+GGG | 0.558321 | 3_1:-68839736 | None:intergenic |
TTTCAAGATCCAGTAATGGA+TGG | 0.559262 | 3_1:+68842610 | Msa0370910:CDS |
TGATTGAGAAGTTTGAACAT+AGG | 0.559730 | 3_1:-68840629 | None:intergenic |
TTCCATTGGAACATCGCTTG+CGG | 0.560083 | 3_1:-68840303 | None:intergenic |
TGTTAGACCGAAAAGTTGCT+TGG | 0.562615 | 3_1:+68843593 | Msa0370910:CDS |
ATGCATTACAGTGATAAGCC+TGG | 0.563441 | 3_1:+68842493 | Msa0370910:intron |
ATCCGCAAGCGATGTTCCAA+TGG | 0.563712 | 3_1:+68840301 | Msa0370910:CDS |
TTGATGGTGAAGGCAACTCA+AGG | 0.563996 | 3_1:+68843676 | Msa0370910:CDS |
TTCGGTTGTACCTAAGGTGA+AGG | 0.564448 | 3_1:+68839878 | Msa0370910:CDS |
CCTGAAATGGTTAAGTGTGT+CGG | 0.565716 | 3_1:-68842834 | None:intergenic |
TGTGTCGGTGTGGTTTCCGA+TGG | 0.566607 | 3_1:-68842819 | None:intergenic |
ATGATGAATTGTATAATTTG+AGG | 0.567968 | 3_1:-68839740 | None:intergenic |
GACATAGAATTTGTATTCTG+AGG | 0.570441 | 3_1:+68843699 | Msa0370910:CDS |
CTTTCCAAGCTGCCTAGTAG+AGG | 0.571601 | 3_1:+68843248 | Msa0370910:CDS |
TAGACCGAAAAGTTGCTTGG+TGG | 0.578729 | 3_1:+68843596 | Msa0370910:CDS |
GAATTGTATAATTTGAGGTG+GGG | 0.579051 | 3_1:-68839735 | None:intergenic |
CTATTGCTCTTGCTGCAGCA+TGG | 0.586018 | 3_1:-68842247 | None:intergenic |
AGAGATATTTGTGCCAGACT+GGG | 0.590054 | 3_1:+68842093 | Msa0370910:CDS |
ATCTGAGGATTTCATGCCAA+GGG | 0.592867 | 3_1:+68842012 | Msa0370910:CDS |
GAAACATTAGGTTCAGGGTA+CGG | 0.596002 | 3_1:+68841746 | Msa0370910:CDS |
TGCACAATAGTAAACATCAA+AGG | 0.596912 | 3_1:+68843537 | Msa0370910:CDS |
ATGAATTGTATAATTTGAGG+TGG | 0.597732 | 3_1:-68839737 | None:intergenic |
GACTCACCGGAGAGTGCCGA+GGG | 0.597740 | 3_1:-68840033 | None:intergenic |
TTTGTTTGGATGGTGCACTT+GGG | 0.600213 | 3_1:+68840876 | Msa0370910:CDS |
TCAAACTTCTCAATCACTTG+AGG | 0.600321 | 3_1:+68840636 | Msa0370910:CDS |
TGTGAGACATGCAACAAATG+AGG | 0.600971 | 3_1:-68841844 | None:intergenic |
GAATAAAAGAGGGCATTCAA+AGG | 0.601533 | 3_1:+68840929 | Msa0370910:CDS |
TATTTAGAGTCAAAATATGG+TGG | 0.602078 | 3_1:+68840258 | Msa0370910:CDS |
GGCAGTGTTTGTAAATTCAG+GGG | 0.603861 | 3_1:+68840657 | Msa0370910:CDS |
TCTTGAAAATAAGGAGACTC+CGG | 0.604659 | 3_1:+68840843 | Msa0370910:CDS |
TTAAACAGTCTCTCAAGTGG+AGG | 0.605758 | 3_1:+68841056 | Msa0370910:intron |
ATAGTAAACATCAAAGGCAG+AGG | 0.608568 | 3_1:+68843543 | Msa0370910:CDS |
AGACTCACCGGAGAGTGCCG+AGG | 0.610924 | 3_1:-68840034 | None:intergenic |
CTTTGACAAACAACTGGTGA+TGG | 0.610947 | 3_1:-68839620 | None:intergenic |
ACCATTAAACTTGATGGTGA+AGG | 0.612381 | 3_1:+68843666 | Msa0370910:CDS |
TTCACATTGAAGAGTCTCCA+AGG | 0.612594 | 3_1:-68843285 | None:intergenic |
TTTGTAGAGCAAGCACGAGA+CGG | 0.614843 | 3_1:+68842217 | Msa0370910:intron |
AGGACGATTGCCTTATGGTG+AGG | 0.621258 | 3_1:+68839898 | Msa0370910:CDS |
AATATGTTAGGTTTGCAACA+AGG | 0.621827 | 3_1:+68841247 | Msa0370910:intron |
ATATACAGTATCTCCAATCA+GGG | 0.622646 | 3_1:+68843310 | Msa0370910:CDS |
ATAGGCGTCTTTAATTGCCA+AGG | 0.624613 | 3_1:+68842774 | Msa0370910:CDS |
TTCAGTCAGCTGGTTCCACA+GGG | 0.625466 | 3_1:+68841573 | Msa0370910:CDS |
AATCCACAAGGAATAAAAGA+GGG | 0.625484 | 3_1:+68840919 | Msa0370910:CDS |
TCCGCAGATACGTTTACATG+TGG | 0.628225 | 3_1:+68841468 | Msa0370910:intron |
GGTGATGGTTGTATCGTATG+GGG | 0.628240 | 3_1:-68839605 | None:intergenic |
CATTAGAGACATCAATAGCA+AGG | 0.628449 | 3_1:+68841804 | Msa0370910:CDS |
TGAAACAAACAATCTCGAGT+AGG | 0.629226 | 3_1:-68842592 | None:intergenic |
CATCTGAGGATTTCATGCCA+AGG | 0.631175 | 3_1:+68842011 | Msa0370910:CDS |
AAATTAAACAGTCTCTCAAG+TGG | 0.633332 | 3_1:+68841053 | Msa0370910:intron |
ACAAACAATCTCGAGTAGGA+CGG | 0.638323 | 3_1:-68842588 | None:intergenic |
CTTGACATGTACAATTCAGG+AGG | 0.640277 | 3_1:+68843474 | Msa0370910:CDS |
CTTGCGGATTTCCCAACACG+TGG | 0.644530 | 3_1:-68840287 | None:intergenic |
TTGCTTGGTGGACATGCAGG+AGG | 0.648593 | 3_1:+68843608 | Msa0370910:CDS |
GACGATTGCCTTATGGTGAG+GGG | 0.658944 | 3_1:+68839900 | Msa0370910:CDS |
TGATGGTGAAGGCAACTCAA+GGG | 0.660992 | 3_1:+68843677 | Msa0370910:CDS |
AAGCTGGCCAATGAAACCAT+CGG | 0.665066 | 3_1:+68842803 | Msa0370910:CDS |
TACACTAAAGTAAATCCACA+AGG | 0.677457 | 3_1:+68840907 | Msa0370910:CDS |
ACATTAGGTTCAGGGTACGG+TGG | 0.677890 | 3_1:+68841749 | Msa0370910:CDS |
TGGTGGATGATACCACGTGT+TGG | 0.678677 | 3_1:+68840275 | Msa0370910:CDS |
GAACCTTAGAGATATAGCCA+TGG | 0.685161 | 3_1:+68841595 | Msa0370910:CDS |
AGGATATTGGAGAAACACAA+AGG | 0.687687 | 3_1:+68840808 | Msa0370910:intron |
CGAAACGCTCCATCCAACAC+AGG | 0.691890 | 3_1:-68840434 | None:intergenic |
AATGGTTAAGTGTGTCGGTG+TGG | 0.693578 | 3_1:-68842829 | None:intergenic |
GTGATGGTTGTATCGTATGG+GGG | 0.697861 | 3_1:-68839604 | None:intergenic |
GAACTTGAATAAGCTGACTG+GGG | 0.722176 | 3_1:+68842749 | Msa0370910:CDS |
GCTGCAGCAAGAGCAATAGG+TGG | 0.723020 | 3_1:+68842251 | Msa0370910:CDS |
TATATCTCTAAGGTTCCCTG+TGG | 0.766010 | 3_1:-68841588 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCAATTAATACAATTAAAA+AGG | - | chr3_1:68842448-68842467 | None:intergenic | 10.0% |
!! | GTAAAGAATAAAAAATAATA+TGG | - | chr3_1:68842712-68842731 | None:intergenic | 10.0% |
!! | TGTATTTAAAAAAATATGCA+GGG | + | chr3_1:68840217-68840236 | Msa0370910:intron | 15.0% |
!!! | ATTTTTATTTCTAATGACAT+AGG | + | chr3_1:68840788-68840807 | Msa0370910:intron | 15.0% |
!!! | TAAAAGTCATAAAATTTTGA+TGG | - | chr3_1:68841656-68841675 | None:intergenic | 15.0% |
!!! | TACTTATATAAACACTTTTA+AGG | + | chr3_1:68842997-68843016 | Msa0370910:intron | 15.0% |
!! | ATAAGCACTTAAATATATAA+AGG | + | chr3_1:68843150-68843169 | Msa0370910:intron | 15.0% |
!! | TAAGCACTTAAATATATAAA+GGG | + | chr3_1:68843151-68843170 | Msa0370910:intron | 15.0% |
!!! | TTTTATAACATTATTAGACT+TGG | - | chr3_1:68843394-68843413 | None:intergenic | 15.0% |
!!! | TCTTTGAATTCTTTTTTATT+TGG | - | chr3_1:68843926-68843945 | None:intergenic | 15.0% |
!! | CTTAACAAATTAAAAAACGT+TGG | + | chr3_1:68839652-68839671 | Msa0370910:five_prime_UTR | 20.0% |
!! | ATGATGAATTGTATAATTTG+AGG | - | chr3_1:68839743-68839762 | None:intergenic | 20.0% |
!! | TTCATTATTAGCTAACTTAT+CGG | - | chr3_1:68840117-68840136 | None:intergenic | 20.0% |
!! | CTCATTGAATTAATATACTA+AGG | - | chr3_1:68840171-68840190 | None:intergenic | 20.0% |
!! | GTGTATTTAAAAAAATATGC+AGG | + | chr3_1:68840216-68840235 | Msa0370910:intron | 20.0% |
!! | GTATTTAAAAAAATATGCAG+GGG | + | chr3_1:68840218-68840237 | Msa0370910:intron | 20.0% |
!!! | CTTTATTTAGAGTCAAAATA+TGG | + | chr3_1:68840255-68840274 | Msa0370910:CDS | 20.0% |
!!! | TACAATGAATTTTTCAAAGA+AGG | + | chr3_1:68841125-68841144 | Msa0370910:CDS | 20.0% |
!!! | CACATCTTTTATAATATGTT+AGG | + | chr3_1:68841235-68841254 | Msa0370910:intron | 20.0% |
!!! | CTAATGTTTCTATCAAATTT+TGG | - | chr3_1:68841736-68841755 | None:intergenic | 20.0% |
!! | CAAAATTTGATAGAAACATT+AGG | + | chr3_1:68841734-68841753 | Msa0370910:CDS | 20.0% |
!! | AGGTTTGAATGTTAAATTTA+GGG | + | chr3_1:68842944-68842963 | Msa0370910:intron | 20.0% |
!! | ATGTTAACATATGTATAAAC+AGG | + | chr3_1:68843413-68843432 | Msa0370910:intron | 20.0% |
!! | AGAAGGTTGGTTAATTTATA+GGG | - | chr3_1:68839711-68839730 | None:intergenic | 25.0% |
!! | AAGAAGGTTGGTTAATTTAT+AGG | - | chr3_1:68839712-68839731 | None:intergenic | 25.0% |
!! | TGAATTGTATAATTTGAGGT+GGG | - | chr3_1:68839739-68839758 | None:intergenic | 25.0% |
! | ATGAATTGTATAATTTGAGG+TGG | - | chr3_1:68839740-68839759 | None:intergenic | 25.0% |
!! | AAAGGATAGTTGAATTTGTT+AGG | - | chr3_1:68839777-68839796 | None:intergenic | 25.0% |
! | AATGAAGTTGAGAATGTTAA+AGG | - | chr3_1:68839795-68839814 | None:intergenic | 25.0% |
!! | TATTTAGAGTCAAAATATGG+TGG | + | chr3_1:68840258-68840277 | Msa0370910:CDS | 25.0% |
! | TGTTTCATGTGTTAAATGAA+AGG | + | chr3_1:68840546-68840565 | Msa0370910:intron | 25.0% |
!!! | CTTTGATTTTTGAATGCTTT+AGG | + | chr3_1:68840601-68840620 | Msa0370910:intron | 25.0% |
! | TAAACATTGTGTAAAGAGTA+AGG | - | chr3_1:68840741-68840760 | None:intergenic | 25.0% |
! | TTTCTAATGACATAGGATAT+TGG | + | chr3_1:68840795-68840814 | Msa0370910:intron | 25.0% |
! | TTTCTGTCATCTTGAAAATA+AGG | + | chr3_1:68840834-68840853 | Msa0370910:CDS | 25.0% |
!! | ATCAAAGTTTTCAAATTTGC+AGG | - | chr3_1:68841014-68841033 | None:intergenic | 25.0% |
! | TGATAGAGTCAATAAAATCA+TGG | - | chr3_1:68841338-68841357 | None:intergenic | 25.0% |
! | CTTAAGTTAATGAGAATCAT+GGG | - | chr3_1:68841422-68841441 | None:intergenic | 25.0% |
! | TCTTAAGTTAATGAGAATCA+TGG | - | chr3_1:68841423-68841442 | None:intergenic | 25.0% |
! | CAATTGAGAGTAATGAAAAA+AGG | - | chr3_1:68841961-68841980 | None:intergenic | 25.0% |
! | AATGAGACAAGAATATTACT+TGG | - | chr3_1:68842126-68842145 | None:intergenic | 25.0% |
! | GCTCTACAAAAGAAATATTT+CGG | - | chr3_1:68842207-68842226 | None:intergenic | 25.0% |
! | ATCAAGAATTCTATCAGATT+CGG | - | chr3_1:68842402-68842421 | None:intergenic | 25.0% |
!!! | AATTAAAAAGGTTTTTTGCC+GGG | - | chr3_1:68842436-68842455 | None:intergenic | 25.0% |
!!! | CAATTAAAAAGGTTTTTTGC+CGG | - | chr3_1:68842437-68842456 | None:intergenic | 25.0% |
!!! | ATTTTAAAATCATGATTGCC+AGG | - | chr3_1:68842514-68842533 | None:intergenic | 25.0% |
! | TGTAACTATTTGTCTCTAAA+TGG | + | chr3_1:68842650-68842669 | Msa0370910:intron | 25.0% |
! | CAGGTTTGAATGTTAAATTT+AGG | + | chr3_1:68842943-68842962 | Msa0370910:intron | 25.0% |
! | ATAAGCTGAAAACAACTTAT+AGG | - | chr3_1:68843060-68843079 | None:intergenic | 25.0% |
!!! | CTTATTTTCTTAAGCTTTTC+AGG | + | chr3_1:68843075-68843094 | Msa0370910:intron | 25.0% |
! | CATATGTATAAACAGGTATT+TGG | + | chr3_1:68843420-68843439 | Msa0370910:intron | 25.0% |
! | GAATTGTATAATTTGAGGTG+GGG | - | chr3_1:68839738-68839757 | None:intergenic | 30.0% |
GTCTACAAACATGACTATTT+CGG | + | chr3_1:68839860-68839879 | Msa0370910:CDS | 30.0% | |
!! | GTGAAACAACAATGTTTTGA+GGG | - | chr3_1:68839947-68839966 | None:intergenic | 30.0% |
AAAAAATATGCAGGGGATAT+AGG | + | chr3_1:68840225-68840244 | Msa0370910:intron | 30.0% | |
TGATTGAGAAGTTTGAACAT+AGG | - | chr3_1:68840632-68840651 | None:intergenic | 30.0% | |
!! | GAGTCTTTGATTAGCTTAAA+TGG | - | chr3_1:68840688-68840707 | None:intergenic | 30.0% |
!! | TACATCTTGATTTGTTTGGA+TGG | + | chr3_1:68840866-68840885 | Msa0370910:CDS | 30.0% |
TACACTAAAGTAAATCCACA+AGG | + | chr3_1:68840907-68840926 | Msa0370910:CDS | 30.0% | |
AAATCCACAAGGAATAAAAG+AGG | + | chr3_1:68840918-68840937 | Msa0370910:CDS | 30.0% | |
AATCCACAAGGAATAAAAGA+GGG | + | chr3_1:68840919-68840938 | Msa0370910:CDS | 30.0% | |
AAATTAAACAGTCTCTCAAG+TGG | + | chr3_1:68841053-68841072 | Msa0370910:intron | 30.0% | |
TCATCAACGATGATAAACTT+TGG | - | chr3_1:68841089-68841108 | None:intergenic | 30.0% | |
! | AAGTTTATCATCGTTGATGA+TGG | + | chr3_1:68841089-68841108 | Msa0370910:CDS | 30.0% |
ATTGAAATGAGAGACTTACT+GGG | - | chr3_1:68841171-68841190 | None:intergenic | 30.0% | |
AATTGAAATGAGAGACTTAC+TGG | - | chr3_1:68841172-68841191 | None:intergenic | 30.0% | |
AATATGTTAGGTTTGCAACA+AGG | + | chr3_1:68841247-68841266 | Msa0370910:intron | 30.0% | |
! | AATTTGAAGTTCAGAAGTGA+TGG | + | chr3_1:68841288-68841307 | Msa0370910:CDS | 30.0% |
ATAGGCTTCTTATTGAGATA+AGG | - | chr3_1:68841388-68841407 | None:intergenic | 30.0% | |
TGAATTGGATATACAAGCTT+CGG | - | chr3_1:68841557-68841576 | None:intergenic | 30.0% | |
TTGATAGAAACATTAGGTTC+AGG | + | chr3_1:68841740-68841759 | Msa0370910:CDS | 30.0% | |
TGATAGAAACATTAGGTTCA+GGG | + | chr3_1:68841741-68841760 | Msa0370910:CDS | 30.0% | |
GACGTGTTTCATTAACAAAA+CGG | + | chr3_1:68841771-68841790 | Msa0370910:CDS | 30.0% | |
ACAACTCTGATTCAATTTAC+AGG | + | chr3_1:68841864-68841883 | Msa0370910:CDS | 30.0% | |
AAGGATGATTCATCAGAAAA+AGG | - | chr3_1:68841942-68841961 | None:intergenic | 30.0% | |
! | ACATGTAAGGTTTGAAATGT+TGG | - | chr3_1:68842040-68842059 | None:intergenic | 30.0% |
TTTGTTTCAAGATCCAGTAA+TGG | + | chr3_1:68842606-68842625 | Msa0370910:CDS | 30.0% | |
TTTACAGTCTGCTGAAAATT+TGG | + | chr3_1:68842727-68842746 | Msa0370910:intron | 30.0% | |
!! | TGGTTTAACTTTTCCTGAAA+TGG | - | chr3_1:68842850-68842869 | None:intergenic | 30.0% |
! | TACAAACTGTACAATTTTGC+AGG | + | chr3_1:68843221-68843240 | Msa0370910:intron | 30.0% |
! | ACTTCTAATTTTCCTCTACT+AGG | - | chr3_1:68843263-68843282 | None:intergenic | 30.0% |
!! | AGGAAAATTAGAAGTATCCT+TGG | + | chr3_1:68843268-68843287 | Msa0370910:CDS | 30.0% |
TATATACAGTATCTCCAATC+AGG | + | chr3_1:68843309-68843328 | Msa0370910:CDS | 30.0% | |
ATATACAGTATCTCCAATCA+GGG | + | chr3_1:68843310-68843329 | Msa0370910:CDS | 30.0% | |
TGCACAATAGTAAACATCAA+AGG | + | chr3_1:68843537-68843556 | Msa0370910:CDS | 30.0% | |
TTACTGACCATTAAACTTGA+TGG | + | chr3_1:68843660-68843679 | Msa0370910:CDS | 30.0% | |
GACATAGAATTTGTATTCTG+AGG | + | chr3_1:68843699-68843718 | Msa0370910:CDS | 30.0% | |
! | TTCTTTTGTATGCTTACGAT+AGG | - | chr3_1:68843789-68843808 | None:intergenic | 30.0% |
! | AATTTTTCATTGTACCGAAG+AGG | + | chr3_1:68843807-68843826 | Msa0370910:three_prime_UTR | 30.0% |
GAACAAATTCTTTACCTCTT+CGG | - | chr3_1:68843824-68843843 | None:intergenic | 30.0% | |
TTTGTGCTTTGACAAACAAC+TGG | - | chr3_1:68839629-68839648 | None:intergenic | 35.0% | |
! | GGTGAAACAACAATGTTTTG+AGG | - | chr3_1:68839948-68839967 | None:intergenic | 35.0% |
TCAGCTATAAGAAAGGAGAA+GGG | - | chr3_1:68840063-68840082 | None:intergenic | 35.0% | |
ATCAGCTATAAGAAAGGAGA+AGG | - | chr3_1:68840064-68840083 | None:intergenic | 35.0% | |
CGCTATATCAGCTATAAGAA+AGG | - | chr3_1:68840070-68840089 | None:intergenic | 35.0% | |
AGAAGCAATTGAGTTTCCAT+TGG | - | chr3_1:68840320-68840339 | None:intergenic | 35.0% | |
CACAGGTAAAAAGAGAATGT+AGG | - | chr3_1:68840420-68840439 | None:intergenic | 35.0% | |
! | CATTCTCTTTTTACCTGTGT+TGG | + | chr3_1:68840421-68840440 | Msa0370910:CDS | 35.0% |
TCAAACTTCTCAATCACTTG+AGG | + | chr3_1:68840636-68840655 | Msa0370910:CDS | 35.0% | |
AGGCAGTGTTTGTAAATTCA+GGG | + | chr3_1:68840656-68840675 | Msa0370910:CDS | 35.0% | |
AGGATATTGGAGAAACACAA+AGG | + | chr3_1:68840808-68840827 | Msa0370910:intron | 35.0% | |
TCTTGAAAATAAGGAGACTC+CGG | + | chr3_1:68840843-68840862 | Msa0370910:CDS | 35.0% | |
CCAAACAAATCAAGATGTAC+CGG | - | chr3_1:68840865-68840884 | None:intergenic | 35.0% | |
!! | GAATAAAAGAGGGCATTCAA+AGG | + | chr3_1:68840929-68840948 | Msa0370910:CDS | 35.0% |
AATTTGCAGGCTTATCACAT+AGG | - | chr3_1:68841001-68841020 | None:intergenic | 35.0% | |
!! | TTATCATCGTTGATGATGGA+TGG | + | chr3_1:68841093-68841112 | Msa0370910:CDS | 35.0% |
TACTGGGTTCCTTCAATTAT+CGG | - | chr3_1:68841155-68841174 | None:intergenic | 35.0% | |
GCATGAGAACTAAGAAATGA+AGG | - | chr3_1:68841214-68841233 | None:intergenic | 35.0% | |
AACAAGGCTGATAGACATTA+AGG | + | chr3_1:68841263-68841282 | Msa0370910:CDS | 35.0% | |
AGTTAATGAGAATCATGGGA+TGG | - | chr3_1:68841418-68841437 | None:intergenic | 35.0% | |
TGAACAAGCATACTCATTGT+CGG | - | chr3_1:68841447-68841466 | None:intergenic | 35.0% | |
! | TTTTCGTTGCGTTTGAAGAT+GGG | - | chr3_1:68841526-68841545 | None:intergenic | 35.0% |
! | TTTTTCGTTGCGTTTGAAGA+TGG | - | chr3_1:68841527-68841546 | None:intergenic | 35.0% |
CATTAGAGACATCAATAGCA+AGG | + | chr3_1:68841804-68841823 | Msa0370910:CDS | 35.0% | |
! | AGCTTTTAACAGTCTTCTTC+TGG | + | chr3_1:68842069-68842088 | Msa0370910:CDS | 35.0% |
! | GCTTTTAACAGTCTTCTTCT+GGG | + | chr3_1:68842070-68842089 | Msa0370910:CDS | 35.0% |
AAGAAGCTAGTACTACCAAA+TGG | + | chr3_1:68842538-68842557 | Msa0370910:CDS | 35.0% | |
TGAAACAAACAATCTCGAGT+AGG | - | chr3_1:68842595-68842614 | None:intergenic | 35.0% | |
! | TTTCAAGATCCAGTAATGGA+TGG | + | chr3_1:68842610-68842629 | Msa0370910:CDS | 35.0% |
!! | ATCCAGTAATGGATGGTAAA+AGG | + | chr3_1:68842617-68842636 | Msa0370910:CDS | 35.0% |
! | TACCTTTTACCATCCATTAC+TGG | - | chr3_1:68842622-68842641 | None:intergenic | 35.0% |
! | ATGAAAGTTGATCGGAAAAG+TGG | - | chr3_1:68842676-68842695 | None:intergenic | 35.0% |
! | CAGTGAGAATGAAAGTTGAT+CGG | - | chr3_1:68842684-68842703 | None:intergenic | 35.0% |
TGAAGAAACTCAACATCAAG+TGG | - | chr3_1:68842870-68842889 | None:intergenic | 35.0% | |
TGATGTTGAGTTTCTTCAAG+AGG | + | chr3_1:68842872-68842891 | Msa0370910:CDS | 35.0% | |
ATACTATATGCCTTCAATGC+AGG | + | chr3_1:68842924-68842943 | Msa0370910:intron | 35.0% | |
AACATTCAAACCTGCATTGA+AGG | - | chr3_1:68842937-68842956 | None:intergenic | 35.0% | |
! | TGTTAAATTTAGGGCATGTC+TGG | + | chr3_1:68842953-68842972 | Msa0370910:intron | 35.0% |
TGTACAGTTTGTAAGCATGT+TGG | - | chr3_1:68843214-68843233 | None:intergenic | 35.0% | |
TACATGTCAAGCAATCCAAT+TGG | - | chr3_1:68843465-68843484 | None:intergenic | 35.0% | |
TTGCTTGACATGTACAATTC+AGG | + | chr3_1:68843471-68843490 | Msa0370910:CDS | 35.0% | |
TAGAAGAATTGTCCTGCATA+AGG | + | chr3_1:68843502-68843521 | Msa0370910:CDS | 35.0% | |
AGAAGAATTGTCCTGCATAA+GGG | + | chr3_1:68843503-68843522 | Msa0370910:CDS | 35.0% | |
ATAGTAAACATCAAAGGCAG+AGG | + | chr3_1:68843543-68843562 | Msa0370910:CDS | 35.0% | |
!! | TTTTCCTACAACTCTGAAGA+TGG | + | chr3_1:68843636-68843655 | Msa0370910:CDS | 35.0% |
TAATCCATCTTCAGAGTTGT+AGG | - | chr3_1:68843643-68843662 | None:intergenic | 35.0% | |
!! | ACCATTAAACTTGATGGTGA+AGG | + | chr3_1:68843666-68843685 | Msa0370910:CDS | 35.0% |
ATGACACGTTCTCATTCTAA+AGG | + | chr3_1:68843895-68843914 | Msa0370910:three_prime_UTR | 35.0% | |
!! | TGGTGATGGTTGTATCGTAT+GGG | - | chr3_1:68839609-68839628 | None:intergenic | 40.0% |
CTTTGACAAACAACTGGTGA+TGG | - | chr3_1:68839623-68839642 | None:intergenic | 40.0% | |
! | TTGTATAATTTGAGGTGGGG+TGG | - | chr3_1:68839735-68839754 | None:intergenic | 40.0% |
GACTATTTCGGTTGTACCTA+AGG | + | chr3_1:68839872-68839891 | Msa0370910:CDS | 40.0% | |
!! | TTGTTTCACCTGTTTCTGCT+GGG | + | chr3_1:68839958-68839977 | Msa0370910:CDS | 40.0% |
ACATGACGAGAACTAGGAAT+AGG | - | chr3_1:68840008-68840027 | None:intergenic | 40.0% | |
TAGCTGATATAGCGAGCTAT+TGG | + | chr3_1:68840076-68840095 | Msa0370910:intron | 40.0% | |
! | AACTTATCGGCTATCAGCTA+CGG | - | chr3_1:68840104-68840123 | None:intergenic | 40.0% |
GGAAACTCAATTGCTTCTAG+TGG | + | chr3_1:68840322-68840341 | Msa0370910:CDS | 40.0% | |
! | CTCTTTTTACCTGTGTTGGA+TGG | + | chr3_1:68840425-68840444 | Msa0370910:CDS | 40.0% |
AACCACTTTCAACGCAGAAT+TGG | - | chr3_1:68840493-68840512 | None:intergenic | 40.0% | |
GAGGCAGTGTTTGTAAATTC+AGG | + | chr3_1:68840655-68840674 | Msa0370910:CDS | 40.0% | |
GGCAGTGTTTGTAAATTCAG+GGG | + | chr3_1:68840657-68840676 | Msa0370910:CDS | 40.0% | |
!! | CCGGTACATCTTGATTTGTT+TGG | + | chr3_1:68840862-68840881 | Msa0370910:CDS | 40.0% |
ATTTGTTTGGATGGTGCACT+TGG | + | chr3_1:68840875-68840894 | Msa0370910:CDS | 40.0% | |
TTTGTTTGGATGGTGCACTT+GGG | + | chr3_1:68840876-68840895 | Msa0370910:CDS | 40.0% | |
! | ATGCCCTCTTTTATTCCTTG+TGG | - | chr3_1:68840925-68840944 | None:intergenic | 40.0% |
TTAAACAGTCTCTCAAGTGG+AGG | + | chr3_1:68841056-68841075 | Msa0370910:intron | 40.0% | |
GAGATTGTTGCAAGAACTGT+TGG | - | chr3_1:68841316-68841335 | None:intergenic | 40.0% | |
TCATGGGATGGAAGTTCAAT+AGG | - | chr3_1:68841406-68841425 | None:intergenic | 40.0% | |
GCATGCTTTAGCTGGTTATT+GGG | + | chr3_1:68841490-68841509 | Msa0370910:CDS | 40.0% | |
CATGCTTTAGCTGGTTATTG+GGG | + | chr3_1:68841491-68841510 | Msa0370910:CDS | 40.0% | |
GTATATCCAATTCAGTCAGC+TGG | + | chr3_1:68841563-68841582 | Msa0370910:CDS | 40.0% | |
!! | TATATCTCTAAGGTTCCCTG+TGG | - | chr3_1:68841591-68841610 | None:intergenic | 40.0% |
GAACCTTAGAGATATAGCCA+TGG | + | chr3_1:68841595-68841614 | Msa0370910:CDS | 40.0% | |
TGTCCATGGCTATATCTCTA+AGG | - | chr3_1:68841601-68841620 | None:intergenic | 40.0% | |
! | ATATTTTTCCAGGCTGTCCA+TGG | - | chr3_1:68841615-68841634 | None:intergenic | 40.0% |
ATGGACAGCCTGGAAAAATA+TGG | + | chr3_1:68841614-68841633 | Msa0370910:CDS | 40.0% | |
AGCCTGGAAAAATATGGAGT+GGG | + | chr3_1:68841620-68841639 | Msa0370910:CDS | 40.0% | |
! | TTCCCACTCCATATTTTTCC+AGG | - | chr3_1:68841625-68841644 | None:intergenic | 40.0% |
GAAACATTAGGTTCAGGGTA+CGG | + | chr3_1:68841746-68841765 | Msa0370910:CDS | 40.0% | |
TGTGAGACATGCAACAAATG+AGG | - | chr3_1:68841847-68841866 | None:intergenic | 40.0% | |
ATCTGAGGATTTCATGCCAA+GGG | + | chr3_1:68842012-68842031 | Msa0370910:CDS | 40.0% | |
!! | GTTTGAAATGTTGGTTCCCT+TGG | - | chr3_1:68842031-68842050 | None:intergenic | 40.0% |
AGAGATATTTGTGCCAGACT+GGG | + | chr3_1:68842093-68842112 | Msa0370910:CDS | 40.0% | |
TCTTGATCTCACTTGTTTCC+CGG | + | chr3_1:68842415-68842434 | Msa0370910:intron | 40.0% | |
ATGCATTACAGTGATAAGCC+TGG | + | chr3_1:68842493-68842512 | Msa0370910:intron | 40.0% | |
ACAAACAATCTCGAGTAGGA+CGG | - | chr3_1:68842591-68842610 | None:intergenic | 40.0% | |
TGGAACTTGAATAAGCTGAC+TGG | + | chr3_1:68842747-68842766 | Msa0370910:CDS | 40.0% | |
GGAACTTGAATAAGCTGACT+GGG | + | chr3_1:68842748-68842767 | Msa0370910:CDS | 40.0% | |
GAACTTGAATAAGCTGACTG+GGG | + | chr3_1:68842749-68842768 | Msa0370910:CDS | 40.0% | |
ATAGGCGTCTTTAATTGCCA+AGG | + | chr3_1:68842774-68842793 | Msa0370910:CDS | 40.0% | |
CCTGAAATGGTTAAGTGTGT+CGG | - | chr3_1:68842837-68842856 | None:intergenic | 40.0% | |
AAGAGGTTGCTGGTGAAAAT+TGG | + | chr3_1:68842889-68842908 | Msa0370910:intron | 40.0% | |
GTTGCTGGTGAAAATTGGAA+TGG | + | chr3_1:68842894-68842913 | Msa0370910:intron | 40.0% | |
! | AGGCTGTTTGAGATAGCTTA+TGG | + | chr3_1:68843017-68843036 | Msa0370910:intron | 40.0% |
TTCACATTGAAGAGTCTCCA+AGG | - | chr3_1:68843288-68843307 | None:intergenic | 40.0% | |
GTCATAACACTAACCCTGAT+TGG | - | chr3_1:68843326-68843345 | None:intergenic | 40.0% | |
CATATGCAATTTGCGCCAAT+TGG | + | chr3_1:68843447-68843466 | Msa0370910:CDS | 40.0% | |
CTTGACATGTACAATTCAGG+AGG | + | chr3_1:68843474-68843493 | Msa0370910:CDS | 40.0% | |
! | GCAACTTTTCGGTCTAACAT+TGG | - | chr3_1:68843592-68843611 | None:intergenic | 40.0% |
TGTTAGACCGAAAAGTTGCT+TGG | + | chr3_1:68843593-68843612 | Msa0370910:CDS | 40.0% | |
! | ATGTCCACCAAGCAACTTTT+CGG | - | chr3_1:68843603-68843622 | None:intergenic | 40.0% |
GCCTTCACCATCAAGTTTAA+TGG | - | chr3_1:68843670-68843689 | None:intergenic | 40.0% | |
! | ACAAGAATCGACTTTCGCTT+TGG | - | chr3_1:68843739-68843758 | None:intergenic | 40.0% |
GTATGCTTACGATAGGAGTT+AGG | - | chr3_1:68843782-68843801 | None:intergenic | 40.0% | |
TTGTATCGTATGGGGGAAAC+AGG | - | chr3_1:68839600-68839619 | None:intergenic | 45.0% | |
GTGATGGTTGTATCGTATGG+GGG | - | chr3_1:68839607-68839626 | None:intergenic | 45.0% | |
! | GGTGATGGTTGTATCGTATG+GGG | - | chr3_1:68839608-68839627 | None:intergenic | 45.0% |
!! | CTGGTGATGGTTGTATCGTA+TGG | - | chr3_1:68839610-68839629 | None:intergenic | 45.0% |
TTCGGTTGTACCTAAGGTGA+AGG | + | chr3_1:68839878-68839897 | Msa0370910:CDS | 45.0% | |
!! | GTTGTTTCACCTGTTTCTGC+TGG | + | chr3_1:68839957-68839976 | Msa0370910:CDS | 45.0% |
!!! | TCTGCTGGGTCTGCTTTTTT+AGG | + | chr3_1:68839972-68839991 | Msa0370910:CDS | 45.0% |
GTGAAGACATGACGAGAACT+AGG | - | chr3_1:68840014-68840033 | None:intergenic | 45.0% | |
TTCCATTGGAACATCGCTTG+CGG | - | chr3_1:68840306-68840325 | None:intergenic | 45.0% | |
GAAGAGTCTGCTCTTAAGAC+AGG | + | chr3_1:68840353-68840372 | Msa0370910:CDS | 45.0% | |
CTCCAATTCTGCGTTGAAAG+TGG | + | chr3_1:68840488-68840507 | Msa0370910:CDS | 45.0% | |
GAAGGCGAACCGATAATTGA+AGG | + | chr3_1:68841143-68841162 | Msa0370910:CDS | 45.0% | |
TCCGCAGATACGTTTACATG+TGG | + | chr3_1:68841468-68841487 | Msa0370910:intron | 45.0% | |
GCCACATGTAAACGTATCTG+CGG | - | chr3_1:68841472-68841491 | None:intergenic | 45.0% | |
TACATGTGGCATGCTTTAGC+TGG | + | chr3_1:68841482-68841501 | Msa0370910:CDS | 45.0% | |
GGCATGCTTTAGCTGGTTAT+TGG | + | chr3_1:68841489-68841508 | Msa0370910:CDS | 45.0% | |
CAGCCTGGAAAAATATGGAG+TGG | + | chr3_1:68841619-68841638 | Msa0370910:CDS | 45.0% | |
CACAGTTATCTTGCTAGCTG+TGG | + | chr3_1:68841686-68841705 | Msa0370910:CDS | 45.0% | |
CATCTGAGGATTTCATGCCA+AGG | + | chr3_1:68842011-68842030 | Msa0370910:CDS | 45.0% | |
AGCTACTGACGCAACATGTA+AGG | - | chr3_1:68842053-68842072 | None:intergenic | 45.0% | |
GAGAGATATTTGTGCCAGAC+TGG | + | chr3_1:68842092-68842111 | Msa0370910:CDS | 45.0% | |
TTTGTAGAGCAAGCACGAGA+CGG | + | chr3_1:68842217-68842236 | Msa0370910:intron | 45.0% | |
GCTCTCAAGACTGATCCATT+TGG | - | chr3_1:68842556-68842575 | None:intergenic | 45.0% | |
GTCTTGAGAGCAAGATATGC+TGG | + | chr3_1:68842565-68842584 | Msa0370910:CDS | 45.0% | |
AATAAGCTGACTGGGGTGAT+AGG | + | chr3_1:68842756-68842775 | Msa0370910:CDS | 45.0% | |
GTCTTTAATTGCCAAGGAGC+AGG | + | chr3_1:68842780-68842799 | Msa0370910:CDS | 45.0% | |
AAGCTGGCCAATGAAACCAT+CGG | + | chr3_1:68842803-68842822 | Msa0370910:CDS | 45.0% | |
GTGGTTTCCGATGGTTTCAT+TGG | - | chr3_1:68842813-68842832 | None:intergenic | 45.0% | |
! | AATGGTTAAGTGTGTCGGTG+TGG | - | chr3_1:68842832-68842851 | None:intergenic | 45.0% |
CCGACACACTTAACCATTTC+AGG | + | chr3_1:68842834-68842853 | Msa0370910:CDS | 45.0% | |
GAGTTTCTTCAAGAGGTTGC+TGG | + | chr3_1:68842879-68842898 | Msa0370910:CDS | 45.0% | |
! | TTTTCCTCTACTAGGCAGCT+TGG | - | chr3_1:68843255-68843274 | None:intergenic | 45.0% |
ATTTGCAGCATCCCTTATGC+AGG | - | chr3_1:68843517-68843536 | None:intergenic | 45.0% | |
AACATCAAAGGCAGAGGATG+TGG | + | chr3_1:68843549-68843568 | Msa0370910:CDS | 45.0% | |
CATTGGAGTACGCTCCAAAT+CGG | - | chr3_1:68843575-68843594 | None:intergenic | 45.0% | |
TAGACCGAAAAGTTGCTTGG+TGG | + | chr3_1:68843596-68843615 | Msa0370910:CDS | 45.0% | |
!! | TTGATGGTGAAGGCAACTCA+AGG | + | chr3_1:68843676-68843695 | Msa0370910:CDS | 45.0% |
! | TGATGGTGAAGGCAACTCAA+GGG | + | chr3_1:68843677-68843696 | Msa0370910:CDS | 45.0% |
! | ATTTGAGGTGGGGTGGAAGA+AGG | - | chr3_1:68839728-68839747 | None:intergenic | 50.0% |
AGGCAATCGTCCTTCACCTT+AGG | - | chr3_1:68839891-68839910 | None:intergenic | 50.0% | |
GGTGAAGGACGATTGCCTTA+TGG | + | chr3_1:68839893-68839912 | Msa0370910:CDS | 50.0% | |
AGGACGATTGCCTTATGGTG+AGG | + | chr3_1:68839898-68839917 | Msa0370910:CDS | 50.0% | |
GGACGATTGCCTTATGGTGA+GGG | + | chr3_1:68839899-68839918 | Msa0370910:CDS | 50.0% | |
GACGATTGCCTTATGGTGAG+GGG | + | chr3_1:68839900-68839919 | Msa0370910:CDS | 50.0% | |
AAAGCAGACCCAGCAGAAAC+AGG | - | chr3_1:68839969-68839988 | None:intergenic | 50.0% | |
TCTCGTCATGTCTTCACCCT+CGG | + | chr3_1:68840017-68840036 | Msa0370910:CDS | 50.0% | |
! | TGGTGGATGATACCACGTGT+TGG | + | chr3_1:68840275-68840294 | Msa0370910:CDS | 50.0% |
GGTGGATGATACCACGTGTT+GGG | + | chr3_1:68840276-68840295 | Msa0370910:CDS | 50.0% | |
ATCCGCAAGCGATGTTCCAA+TGG | + | chr3_1:68840301-68840320 | Msa0370910:CDS | 50.0% | |
GCTTTAGCTGGTTATTGGGG+AGG | + | chr3_1:68841494-68841513 | Msa0370910:CDS | 50.0% | |
GTGGAACCAGCTGACTGAAT+TGG | - | chr3_1:68841572-68841591 | None:intergenic | 50.0% | |
! | ATTCAGTCAGCTGGTTCCAC+AGG | + | chr3_1:68841572-68841591 | Msa0370910:CDS | 50.0% |
! | TTCAGTCAGCTGGTTCCACA+GGG | + | chr3_1:68841573-68841592 | Msa0370910:CDS | 50.0% |
AGATATAGCCATGGACAGCC+TGG | + | chr3_1:68841604-68841623 | Msa0370910:CDS | 50.0% | |
ACATTAGGTTCAGGGTACGG+TGG | + | chr3_1:68841749-68841768 | Msa0370910:CDS | 50.0% | |
!! | TGCAGTAGCAAGAGCATCTG+AGG | + | chr3_1:68841997-68842016 | Msa0370910:CDS | 50.0% |
ACTTGGAACATGTCCCAGTC+TGG | - | chr3_1:68842109-68842128 | None:intergenic | 50.0% | |
CTATTGCTCTTGCTGCAGCA+TGG | - | chr3_1:68842250-68842269 | None:intergenic | 50.0% | |
CATGCTGCAGCAAGAGCAAT+AGG | + | chr3_1:68842248-68842267 | Msa0370910:CDS | 50.0% | |
CTTTCCAAGCTGCCTAGTAG+AGG | + | chr3_1:68843248-68843267 | Msa0370910:CDS | 50.0% | |
! | AAGTTGCTTGGTGGACATGC+AGG | + | chr3_1:68843605-68843624 | Msa0370910:CDS | 50.0% |
TCACGTTGCCCCTCACCATA+AGG | - | chr3_1:68839911-68839930 | None:intergenic | 55.0% | |
GGAGAAGGGATGAGACTCAC+CGG | - | chr3_1:68840049-68840068 | None:intergenic | 55.0% | |
CTTGCGGATTTCCCAACACG+TGG | - | chr3_1:68840290-68840309 | None:intergenic | 55.0% | |
CGAAACGCTCCATCCAACAC+AGG | - | chr3_1:68840437-68840456 | None:intergenic | 55.0% | |
GCGTTTCGCGCAACTTTGCA+AGG | + | chr3_1:68840449-68840468 | Msa0370910:CDS | 55.0% | |
GCTGCAGCAAGAGCAATAGG+TGG | + | chr3_1:68842251-68842270 | Msa0370910:CDS | 55.0% | |
ATTGCCAAGGAGCAGGAAGC+TGG | + | chr3_1:68842787-68842806 | Msa0370910:CDS | 55.0% | |
! | TGTGTCGGTGTGGTTTCCGA+TGG | - | chr3_1:68842822-68842841 | None:intergenic | 55.0% |
! | TTGCTTGGTGGACATGCAGG+AGG | + | chr3_1:68843608-68843627 | Msa0370910:CDS | 55.0% |
GAGGTGGGGTGGAAGAAGGT+TGG | - | chr3_1:68839724-68839743 | None:intergenic | 60.0% | |
TCTTCACCCTCGGCACTCTC+CGG | + | chr3_1:68840027-68840046 | Msa0370910:CDS | 60.0% | |
! | CTTGCTAGCTGTGGCGTCGA+TGG | + | chr3_1:68841695-68841714 | Msa0370910:CDS | 60.0% |
TTGGCCAGCTTCCTGCTCCT+TGG | - | chr3_1:68842794-68842813 | None:intergenic | 60.0% | |
GGCAGAGGATGTGGCCGATT+TGG | + | chr3_1:68843558-68843577 | Msa0370910:CDS | 60.0% | |
! | CTTGGTGGACATGCAGGAGG+AGG | + | chr3_1:68843611-68843630 | Msa0370910:CDS | 60.0% |
!! | GACTCACCGGAGAGTGCCGA+GGG | - | chr3_1:68840036-68840055 | None:intergenic | 65.0% |
!! | AGACTCACCGGAGAGTGCCG+AGG | - | chr3_1:68840037-68840056 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 68839552 | 68843958 | 68839552 | ID=Msa0370910;Name=Msa0370910 |
chr3_1 | mRNA | 68839552 | 68843958 | 68839552 | ID=Msa0370910-mRNA-1;Parent=Msa0370910;Name=Msa0370910-mRNA-1;_AED=0.10;_eAED=0.10;_QI=135|0.91|0.92|1|0.83|0.84|13|239|796 |
chr3_1 | exon | 68839552 | 68840048 | 68839552 | ID=Msa0370910-mRNA-1:exon:14518;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68840238 | 68840509 | 68840238 | ID=Msa0370910-mRNA-1:exon:14519;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68840623 | 68840713 | 68840623 | ID=Msa0370910-mRNA-1:exon:14520;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68840810 | 68840950 | 68840810 | ID=Msa0370910-mRNA-1:exon:14521;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68841064 | 68841171 | 68841064 | ID=Msa0370910-mRNA-1:exon:14522;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68841257 | 68841376 | 68841257 | ID=Msa0370910-mRNA-1:exon:14523;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68841475 | 68841885 | 68841475 | ID=Msa0370910-mRNA-1:exon:14524;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68841985 | 68842126 | 68841985 | ID=Msa0370910-mRNA-1:exon:14525;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68842224 | 68842283 | 68842224 | ID=Msa0370910-mRNA-1:exon:14526;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68842496 | 68842638 | 68842496 | ID=Msa0370910-mRNA-1:exon:14527;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68842734 | 68842900 | 68842734 | ID=Msa0370910-mRNA-1:exon:14528;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68843243 | 68843331 | 68843243 | ID=Msa0370910-mRNA-1:exon:14529;Parent=Msa0370910-mRNA-1 |
chr3_1 | exon | 68843435 | 68843958 | 68843435 | ID=Msa0370910-mRNA-1:exon:14530;Parent=Msa0370910-mRNA-1 |
chr3_1 | five_prime_UTR | 68839552 | 68839686 | 68839552 | ID=Msa0370910-mRNA-1:five_prime_utr;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68839687 | 68840048 | 68839687 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68840238 | 68840509 | 68840238 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68840623 | 68840713 | 68840623 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68840810 | 68840950 | 68840810 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68841064 | 68841171 | 68841064 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68841257 | 68841376 | 68841257 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68841475 | 68841885 | 68841475 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68841985 | 68842126 | 68841985 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68842224 | 68842283 | 68842224 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68842496 | 68842638 | 68842496 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68842734 | 68842900 | 68842734 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68843243 | 68843331 | 68843243 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | CDS | 68843435 | 68843719 | 68843435 | ID=Msa0370910-mRNA-1:cds;Parent=Msa0370910-mRNA-1 |
chr3_1 | three_prime_UTR | 68843720 | 68843958 | 68843720 | ID=Msa0370910-mRNA-1:three_prime_utr;Parent=Msa0370910-mRNA-1 |
Gene Sequence |
Protein sequence |