AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0461190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461190 MtrunA17_Chr3g0111351 83.088 136 23 0 1 136 9 144 6.90e-83 239
Msa0461190 MtrunA17_Chr3g0111241 80.292 137 19 2 1 136 1 130 1.78e-76 223
Msa0461190 MtrunA17_Chr3g0111281 52.857 140 62 2 1 136 1 140 5.06e-46 146
Msa0461190 MtrunA17_Chr3g0111111 54.167 144 54 4 1 136 1 140 2.37e-45 144
Msa0461190 MtrunA17_Chr3g0111071 56.391 133 54 2 1 132 1 130 4.03e-45 143
Msa0461190 MtrunA17_Chr3g0111081 55.639 133 55 2 1 132 1 130 7.77e-45 143
Msa0461190 MtrunA17_Chr3g0111131 57.692 130 53 2 1 129 1 129 4.32e-43 138
Msa0461190 MtrunA17_Chr3g0111261 50.355 141 60 6 1 136 1 136 2.22e-38 126
Msa0461190 MtrunA17_Chr3g0111221 52.174 115 54 1 22 136 1 114 1.49e-35 119
Msa0461190 MtrunA17_Chr6g0464071 50.365 137 64 3 1 136 1 134 1.61e-35 119
Msa0461190 MtrunA17_Chr3g0104571 45.985 137 70 3 1 135 1 135 7.44e-35 117
Msa0461190 MtrunA17_Chr3g0111191 51.240 121 47 4 1 113 1 117 3.79e-33 112
Msa0461190 MtrunA17_Chr7g0236791 43.478 138 76 2 1 136 1 138 3.82e-31 108
Msa0461190 MtrunA17_Chr3g0111311 60.000 95 35 2 22 116 1 92 2.17e-29 102
Msa0461190 MtrunA17_Chr6g0456951 44.118 136 69 6 1 132 1 133 9.95e-28 99.8
Msa0461190 MtrunA17_Chr6g0468601 41.304 138 70 5 1 132 1 133 1.75e-27 99.0
Msa0461190 MtrunA17_Chr3g0090571 38.158 152 74 5 1 134 1 150 4.91e-27 98.2
Msa0461190 MtrunA17_Chr7g0236801 40.000 140 79 3 1 136 1 139 1.84e-26 96.7
Msa0461190 MtrunA17_Chr6g0468621 41.045 134 73 4 1 132 1 130 5.92e-26 95.1
Msa0461190 MtrunA17_Chr3g0111201 75.926 54 13 0 83 136 3 56 1.28e-25 91.7
Msa0461190 MtrunA17_Chr7g0232011 40.411 146 70 4 1 134 1 141 4.05e-24 90.5
Msa0461190 MtrunA17_Chr3g0111711 49.057 106 45 4 1 100 1 103 1.04e-23 88.6
Msa0461190 MtrunA17_Chr1g0153591 42.276 123 59 3 1 123 1 111 1.82e-23 87.8
Msa0461190 MtrunA17_Chr4g0012121 40.769 130 55 5 17 132 18 139 3.82e-21 83.2
Msa0461190 MtrunA17_Chr6g0456991 43.137 102 52 3 19 117 1 99 6.26e-20 79.0
Msa0461190 MtrunA17_Chr8g0359071 39.091 110 61 3 10 117 11 116 2.22e-19 78.2
Msa0461190 MtrunA17_Chr7g0225821 39.655 116 63 4 8 120 10 121 4.10e-19 77.4
Msa0461190 MtrunA17_Chr7g0231991 41.880 117 59 4 22 132 1 114 4.17e-19 77.4
Msa0461190 MtrunA17_Chr8g0344801 43.158 95 48 4 41 132 4 95 1.56e-18 75.1
Msa0461190 MtrunA17_Chr8g0344791 50.769 65 31 1 66 129 44 108 3.05e-16 69.7
Msa0461190 MtrunA17_Chr8g0344771 42.045 88 49 2 46 132 24 110 8.92e-16 68.6
Msa0461190 MtrunA17_Chr8g0357331 43.836 73 40 1 59 131 11 82 6.90e-15 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 28 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAAGCCTATTTATTTAA+AGG 0.144544 3_3:+59299031 None:intergenic
CCTAATTCTGATATCAAATA+TGG 0.235651 3_3:-59299212 Msa0461190:CDS
ATGTACTCCTTTAAATAAAT+AGG 0.242272 3_3:-59299038 Msa0461190:three_prime_UTR
CCATATTTGATATCAGAATT+AGG 0.279617 3_3:+59299212 None:intergenic
GTCTTCTTGCTTGCTGTATT+CGG 0.286162 3_3:-59299940 Msa0461190:intron
AAACAATAGTATATTGTAAC+TGG 0.385926 3_3:-59300017 Msa0461190:five_prime_UTR
ATCAATCAATGGCTAATGTT+AGG 0.420426 3_3:-59299978 Msa0461190:exon
TAATATATATCTAGCATCAT+AGG 0.427895 3_3:+59299068 None:intergenic
GCATGAGACCAACATAAGTT+AGG 0.446047 3_3:+59299278 None:intergenic
TTCTCGATGAAGAAAATAGA+AGG 0.459780 3_3:-59299443 Msa0461190:CDS
AAAATAGAAGGAGGAAAGTG+TGG 0.480331 3_3:-59299431 Msa0461190:CDS
AAATAGGCTTCTTATGTGCA+TGG 0.486854 3_3:-59299022 Msa0461190:three_prime_UTR
TGGCTGTCGTTGCTTTGTCA+CGG 0.496191 3_3:-59299366 Msa0461190:CDS
GGCTGTCGTTGCTTTGTCAC+GGG 0.498421 3_3:-59299365 Msa0461190:CDS
GTCTTCTGCTTCAGAGATAG+AGG 0.504252 3_3:+59299178 None:intergenic
TCATGCTGAATGCATAAGAA+AGG 0.509862 3_3:-59299261 Msa0461190:CDS
AATAGGCTTCTTATGTGCAT+GGG 0.513352 3_3:-59299021 Msa0461190:three_prime_UTR
AAATAGAAGGAGGAAAGTGT+GGG 0.529716 3_3:-59299430 Msa0461190:CDS
AGAAGTGTGGCGCACCAACC+AGG 0.533376 3_3:+59299329 None:intergenic
AGGAACTACCTAACTTATGT+TGG 0.546452 3_3:-59299286 Msa0461190:CDS
CATGCTGAATGCATAAGAAA+GGG 0.550324 3_3:-59299260 Msa0461190:CDS
GCATAAGACATGCTGATGAA+AGG 0.562460 3_3:+59298994 None:intergenic
AATGCATAAGAAAGGGTAGT+GGG 0.610428 3_3:-59299253 Msa0461190:CDS
AGCAGAAGACTCATTCAAGA+TGG 0.618191 3_3:-59299165 Msa0461190:CDS
GAATGCATAAGAAAGGGTAG+TGG 0.639235 3_3:-59299254 Msa0461190:CDS
AGAAGGAGGAAAGTGTGGGG+AGG 0.641895 3_3:-59299426 Msa0461190:CDS
AATAGAAGGAGGAAAGTGTG+GGG 0.656331 3_3:-59299429 Msa0461190:CDS
TCGATGAAGAAAATAGAAGG+AGG 0.675646 3_3:-59299440 Msa0461190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTTTTTTAATTAG+CGG + chr3_3:59299182-59299201 None:intergenic 10.0%
!!! TAAAGTTAGTAAATAATTTT+AGG - chr3_3:59299260-59299279 Msa0461190:CDS 10.0%
!!! AGTTTTTTTTTTTTAATTAG+CGG + chr3_3:59299182-59299201 None:intergenic 10.0%
!!! TAAAGTTAGTAAATAATTTT+AGG - chr3_3:59299260-59299279 Msa0461190:CDS 10.0%
!! AAACAATAGTATATTGTAAC+TGG - chr3_3:59298970-59298989 Msa0461190:three_prime_UTR 20.0%
!! AATGCAAGAATGATATATAT+TGG + chr3_3:59299097-59299116 None:intergenic 20.0%
!! TAGAAATTAACTATCATATG+TGG - chr3_3:59299132-59299151 Msa0461190:CDS 20.0%
!!! TTTTTTTTTTTAATTAGCGG+AGG + chr3_3:59299179-59299198 None:intergenic 20.0%
!!! ATGGTAATAATTCTCTTTTA+TGG + chr3_3:59299325-59299344 None:intergenic 20.0%
!! AAGAGAATTATTACCATAAA+AGG - chr3_3:59299328-59299347 Msa0461190:CDS 20.0%
!! ACTTCTTTCTATTAAAAAGA+AGG - chr3_3:59299675-59299694 Msa0461190:intron 20.0%
!! TAATATATATCTAGCATCAT+AGG + chr3_3:59299922-59299941 None:intergenic 20.0%
!! ATGTACTCCTTTAAATAAAT+AGG - chr3_3:59299949-59299968 Msa0461190:CDS 20.0%
!! TAAGAAGCCTATTTATTTAA+AGG + chr3_3:59299959-59299978 None:intergenic 20.0%
!! AAACAATAGTATATTGTAAC+TGG - chr3_3:59298970-59298989 Msa0461190:three_prime_UTR 20.0%
!! AATGCAAGAATGATATATAT+TGG + chr3_3:59299097-59299116 None:intergenic 20.0%
!! TAGAAATTAACTATCATATG+TGG - chr3_3:59299132-59299151 Msa0461190:CDS 20.0%
!!! TTTTTTTTTTTAATTAGCGG+AGG + chr3_3:59299179-59299198 None:intergenic 20.0%
!!! ATGGTAATAATTCTCTTTTA+TGG + chr3_3:59299325-59299344 None:intergenic 20.0%
!! AAGAGAATTATTACCATAAA+AGG - chr3_3:59299328-59299347 Msa0461190:CDS 20.0%
!! ACTTCTTTCTATTAAAAAGA+AGG - chr3_3:59299675-59299694 Msa0461190:intron 20.0%
!! TAATATATATCTAGCATCAT+AGG + chr3_3:59299922-59299941 None:intergenic 20.0%
!! ATGTACTCCTTTAAATAAAT+AGG - chr3_3:59299949-59299968 Msa0461190:CDS 20.0%
!! TAAGAAGCCTATTTATTTAA+AGG + chr3_3:59299959-59299978 None:intergenic 20.0%
!! TCTTTTGATCAATCAATCAA+TGG - chr3_3:59298998-59299017 Msa0461190:three_prime_UTR 25.0%
!! TCAAAAACAGTTTCCTTTTA+TGG + chr3_3:59299344-59299363 None:intergenic 25.0%
! AAAATTATGGGAAATGCTAA+CGG + chr3_3:59299454-59299473 None:intergenic 25.0%
!! CTTTTTAATAGAAAGAAGTG+TGG + chr3_3:59299674-59299693 None:intergenic 25.0%
! TTCTATTAAAAAGAAGGTTG+AGG - chr3_3:59299681-59299700 Msa0461190:intron 25.0%
! CCATATTTGATATCAGAATT+AGG + chr3_3:59299778-59299797 None:intergenic 25.0%
! CCTAATTCTGATATCAAATA+TGG - chr3_3:59299775-59299794 Msa0461190:intron 25.0%
!! TCTTTTGATCAATCAATCAA+TGG - chr3_3:59298998-59299017 Msa0461190:three_prime_UTR 25.0%
!! TCAAAAACAGTTTCCTTTTA+TGG + chr3_3:59299344-59299363 None:intergenic 25.0%
! AAAATTATGGGAAATGCTAA+CGG + chr3_3:59299454-59299473 None:intergenic 25.0%
!! CTTTTTAATAGAAAGAAGTG+TGG + chr3_3:59299674-59299693 None:intergenic 25.0%
! TTCTATTAAAAAGAAGGTTG+AGG - chr3_3:59299681-59299700 Msa0461190:intron 25.0%
! CCATATTTGATATCAGAATT+AGG + chr3_3:59299778-59299797 None:intergenic 25.0%
! CCTAATTCTGATATCAAATA+TGG - chr3_3:59299775-59299794 Msa0461190:intron 25.0%
ATCAATCAATGGCTAATGTT+AGG - chr3_3:59299009-59299028 Msa0461190:three_prime_UTR 30.0%
TTACCCACAAAATTTAGCAA+CGG - chr3_3:59299205-59299224 Msa0461190:CDS 30.0%
! TTTCCGTTGCTAAATTTTGT+GGG + chr3_3:59299211-59299230 None:intergenic 30.0%
! ATTTCCGTTGCTAAATTTTG+TGG + chr3_3:59299212-59299231 None:intergenic 30.0%
ACTGGTTAAGGATATGAAAA+AGG + chr3_3:59299419-59299438 None:intergenic 30.0%
AAATTATGGGAAATGCTAAC+GGG + chr3_3:59299453-59299472 None:intergenic 30.0%
TTCTCGATGAAGAAAATAGA+AGG - chr3_3:59299544-59299563 Msa0461190:intron 30.0%
!! CAATTTAATTTTTGTGACGC+TGG - chr3_3:59299595-59299614 Msa0461190:intron 30.0%
! CATGTCTTATGCTTTTGTTA+GGG - chr3_3:59300004-59300023 Msa0461190:five_prime_UTR 30.0%
ATCAATCAATGGCTAATGTT+AGG - chr3_3:59299009-59299028 Msa0461190:three_prime_UTR 30.0%
TTACCCACAAAATTTAGCAA+CGG - chr3_3:59299205-59299224 Msa0461190:CDS 30.0%
! TTTCCGTTGCTAAATTTTGT+GGG + chr3_3:59299211-59299230 None:intergenic 30.0%
! ATTTCCGTTGCTAAATTTTG+TGG + chr3_3:59299212-59299231 None:intergenic 30.0%
ACTGGTTAAGGATATGAAAA+AGG + chr3_3:59299419-59299438 None:intergenic 30.0%
AAATTATGGGAAATGCTAAC+GGG + chr3_3:59299453-59299472 None:intergenic 30.0%
TTCTCGATGAAGAAAATAGA+AGG - chr3_3:59299544-59299563 Msa0461190:intron 30.0%
!! CAATTTAATTTTTGTGACGC+TGG - chr3_3:59299595-59299614 Msa0461190:intron 30.0%
! CATGTCTTATGCTTTTGTTA+GGG - chr3_3:59300004-59300023 Msa0461190:five_prime_UTR 30.0%
!!! AATTTTAGGTTCCTGCTAAC+CGG - chr3_3:59299274-59299293 Msa0461190:CDS 35.0%
TCGATGAAGAAAATAGAAGG+AGG - chr3_3:59299547-59299566 Msa0461190:intron 35.0%
AAAATAGAAGGAGGAAAGTG+TGG - chr3_3:59299556-59299575 Msa0461190:intron 35.0%
! AAATAGAAGGAGGAAAGTGT+GGG - chr3_3:59299557-59299576 Msa0461190:intron 35.0%
AGGAACTACCTAACTTATGT+TGG - chr3_3:59299701-59299720 Msa0461190:intron 35.0%
TCATGCTGAATGCATAAGAA+AGG - chr3_3:59299726-59299745 Msa0461190:intron 35.0%
CATGCTGAATGCATAAGAAA+GGG - chr3_3:59299727-59299746 Msa0461190:intron 35.0%
AATGCATAAGAAAGGGTAGT+GGG - chr3_3:59299734-59299753 Msa0461190:intron 35.0%
AAATAGGCTTCTTATGTGCA+TGG - chr3_3:59299965-59299984 Msa0461190:CDS 35.0%
AATAGGCTTCTTATGTGCAT+GGG - chr3_3:59299966-59299985 Msa0461190:CDS 35.0%
! GCATGTCTTATGCTTTTGTT+AGG - chr3_3:59300003-59300022 Msa0461190:five_prime_UTR 35.0%
!!! AATTTTAGGTTCCTGCTAAC+CGG - chr3_3:59299274-59299293 Msa0461190:CDS 35.0%
TCGATGAAGAAAATAGAAGG+AGG - chr3_3:59299547-59299566 Msa0461190:intron 35.0%
AAAATAGAAGGAGGAAAGTG+TGG - chr3_3:59299556-59299575 Msa0461190:intron 35.0%
! AAATAGAAGGAGGAAAGTGT+GGG - chr3_3:59299557-59299576 Msa0461190:intron 35.0%
AGGAACTACCTAACTTATGT+TGG - chr3_3:59299701-59299720 Msa0461190:intron 35.0%
TCATGCTGAATGCATAAGAA+AGG - chr3_3:59299726-59299745 Msa0461190:intron 35.0%
CATGCTGAATGCATAAGAAA+GGG - chr3_3:59299727-59299746 Msa0461190:intron 35.0%
AATGCATAAGAAAGGGTAGT+GGG - chr3_3:59299734-59299753 Msa0461190:intron 35.0%
AAATAGGCTTCTTATGTGCA+TGG - chr3_3:59299965-59299984 Msa0461190:CDS 35.0%
AATAGGCTTCTTATGTGCAT+GGG - chr3_3:59299966-59299985 Msa0461190:CDS 35.0%
! GCATGTCTTATGCTTTTGTT+AGG - chr3_3:59300003-59300022 Msa0461190:five_prime_UTR 35.0%
!! GTCTTCTTGCTTGCTGTATT+CGG - chr3_3:59299047-59299066 Msa0461190:three_prime_UTR 40.0%
! AATAGAAGGAGGAAAGTGTG+GGG - chr3_3:59299558-59299577 Msa0461190:intron 40.0%
! AATTTTTGTGACGCTGGTGA+TGG - chr3_3:59299601-59299620 Msa0461190:intron 40.0%
GCATGAGACCAACATAAGTT+AGG + chr3_3:59299712-59299731 None:intergenic 40.0%
GAATGCATAAGAAAGGGTAG+TGG - chr3_3:59299733-59299752 Msa0461190:intron 40.0%
AGCAGAAGACTCATTCAAGA+TGG - chr3_3:59299822-59299841 Msa0461190:intron 40.0%
GCATAAGACATGCTGATGAA+AGG + chr3_3:59299996-59300015 None:intergenic 40.0%
!! GTCTTCTTGCTTGCTGTATT+CGG - chr3_3:59299047-59299066 Msa0461190:three_prime_UTR 40.0%
! AATAGAAGGAGGAAAGTGTG+GGG - chr3_3:59299558-59299577 Msa0461190:intron 40.0%
! AATTTTTGTGACGCTGGTGA+TGG - chr3_3:59299601-59299620 Msa0461190:intron 40.0%
GCATGAGACCAACATAAGTT+AGG + chr3_3:59299712-59299731 None:intergenic 40.0%
GAATGCATAAGAAAGGGTAG+TGG - chr3_3:59299733-59299752 Msa0461190:intron 40.0%
AGCAGAAGACTCATTCAAGA+TGG - chr3_3:59299822-59299841 Msa0461190:intron 40.0%
GCATAAGACATGCTGATGAA+AGG + chr3_3:59299996-59300015 None:intergenic 40.0%
!! TTTTAATTAGCGGAGGCCAG+AGG + chr3_3:59299172-59299191 None:intergenic 45.0%
GTCTTCTGCTTCAGAGATAG+AGG + chr3_3:59299812-59299831 None:intergenic 45.0%
!! TTTTAATTAGCGGAGGCCAG+AGG + chr3_3:59299172-59299191 None:intergenic 45.0%
GTCTTCTGCTTCAGAGATAG+AGG + chr3_3:59299812-59299831 None:intergenic 45.0%
!! TATTATAAGAATAAAATTAT+GGG + chr3_3:59299466-59299485 None:intergenic 5.0%
!! ATATTATAAGAATAAAATTA+TGG + chr3_3:59299467-59299486 None:intergenic 5.0%
!! TTATTCTTATAATATAATAA+TGG - chr3_3:59299472-59299491 Msa0461190:intron 5.0%
!! TATTATAAGAATAAAATTAT+GGG + chr3_3:59299466-59299485 None:intergenic 5.0%
!! ATATTATAAGAATAAAATTA+TGG + chr3_3:59299467-59299486 None:intergenic 5.0%
!! TTATTCTTATAATATAATAA+TGG - chr3_3:59299472-59299491 Msa0461190:intron 5.0%
CATATCCTTAACCAGTGCCC+CGG - chr3_3:59299423-59299442 Msa0461190:CDS 50.0%
ATATCCTTAACCAGTGCCCC+GGG - chr3_3:59299424-59299443 Msa0461190:CDS 50.0%
! TGGCTGTCGTTGCTTTGTCA+CGG - chr3_3:59299621-59299640 Msa0461190:intron 50.0%
!!! GTGTTTTGACTCAGCCTGGT+TGG - chr3_3:59299644-59299663 Msa0461190:intron 50.0%
CATATCCTTAACCAGTGCCC+CGG - chr3_3:59299423-59299442 Msa0461190:CDS 50.0%
ATATCCTTAACCAGTGCCCC+GGG - chr3_3:59299424-59299443 Msa0461190:CDS 50.0%
! TGGCTGTCGTTGCTTTGTCA+CGG - chr3_3:59299621-59299640 Msa0461190:intron 50.0%
!!! GTGTTTTGACTCAGCCTGGT+TGG - chr3_3:59299644-59299663 Msa0461190:intron 50.0%
CATGCTTAACCAGTGTCCCG+GGG + chr3_3:59299302-59299321 None:intergenic 55.0%
GCATGCTTAACCAGTGTCCC+GGG + chr3_3:59299303-59299322 None:intergenic 55.0%
GGCATGCTTAACCAGTGTCC+CGG + chr3_3:59299304-59299323 None:intergenic 55.0%
TATCCTTAACCAGTGCCCCG+GGG - chr3_3:59299425-59299444 Msa0461190:CDS 55.0%
! AGAAGGAGGAAAGTGTGGGG+AGG - chr3_3:59299561-59299580 Msa0461190:intron 55.0%
! GGCTGTCGTTGCTTTGTCAC+GGG - chr3_3:59299622-59299641 Msa0461190:intron 55.0%
!!! ACGGGTGTTTTGACTCAGCC+TGG - chr3_3:59299640-59299659 Msa0461190:intron 55.0%
CATGCTTAACCAGTGTCCCG+GGG + chr3_3:59299302-59299321 None:intergenic 55.0%
GCATGCTTAACCAGTGTCCC+GGG + chr3_3:59299303-59299322 None:intergenic 55.0%
GGCATGCTTAACCAGTGTCC+CGG + chr3_3:59299304-59299323 None:intergenic 55.0%
TATCCTTAACCAGTGCCCCG+GGG - chr3_3:59299425-59299444 Msa0461190:CDS 55.0%
! AGAAGGAGGAAAGTGTGGGG+AGG - chr3_3:59299561-59299580 Msa0461190:intron 55.0%
! GGCTGTCGTTGCTTTGTCAC+GGG - chr3_3:59299622-59299641 Msa0461190:intron 55.0%
!!! ACGGGTGTTTTGACTCAGCC+TGG - chr3_3:59299640-59299659 Msa0461190:intron 55.0%
GGCATGTATCCGCTTGCCTC+TGG - chr3_3:59299153-59299172 Msa0461190:CDS 60.0%
! AAATGCTAACGGGTGCCCCG+GGG + chr3_3:59299443-59299462 None:intergenic 60.0%
! GAAATGCTAACGGGTGCCCC+GGG + chr3_3:59299444-59299463 None:intergenic 60.0%
! GGAAATGCTAACGGGTGCCC+CGG + chr3_3:59299445-59299464 None:intergenic 60.0%
! AGAAGTGTGGCGCACCAACC+AGG + chr3_3:59299661-59299680 None:intergenic 60.0%
GGCATGTATCCGCTTGCCTC+TGG - chr3_3:59299153-59299172 Msa0461190:CDS 60.0%
! AAATGCTAACGGGTGCCCCG+GGG + chr3_3:59299443-59299462 None:intergenic 60.0%
! GAAATGCTAACGGGTGCCCC+GGG + chr3_3:59299444-59299463 None:intergenic 60.0%
! GGAAATGCTAACGGGTGCCC+CGG + chr3_3:59299445-59299464 None:intergenic 60.0%
! AGAAGTGTGGCGCACCAACC+AGG + chr3_3:59299661-59299680 None:intergenic 60.0%
TAGCGGAGGCCAGAGGCAAG+CGG + chr3_3:59299165-59299184 None:intergenic 65.0%
GTTCCTGCTAACCGGTGCCC+CGG - chr3_3:59299282-59299301 Msa0461190:CDS 65.0%
TTCCTGCTAACCGGTGCCCC+GGG - chr3_3:59299283-59299302 Msa0461190:CDS 65.0%
TAACCAGTGTCCCGGGGCAC+CGG + chr3_3:59299296-59299315 None:intergenic 65.0%
TAGCGGAGGCCAGAGGCAAG+CGG + chr3_3:59299165-59299184 None:intergenic 65.0%
GTTCCTGCTAACCGGTGCCC+CGG - chr3_3:59299282-59299301 Msa0461190:CDS 65.0%
TTCCTGCTAACCGGTGCCCC+GGG - chr3_3:59299283-59299302 Msa0461190:CDS 65.0%
TAACCAGTGTCCCGGGGCAC+CGG + chr3_3:59299296-59299315 None:intergenic 65.0%
TAACCGGTGCCCCGGGACAC+TGG - chr3_3:59299290-59299309 Msa0461190:CDS 70.0%
!! GTGCCCCGGGGCACTGGTTA+AGG + chr3_3:59299431-59299450 None:intergenic 70.0%
TAACCGGTGCCCCGGGACAC+TGG - chr3_3:59299290-59299309 Msa0461190:CDS 70.0%
!! GTGCCCCGGGGCACTGGTTA+AGG + chr3_3:59299431-59299450 None:intergenic 70.0%
!! GTCCCGGGGCACCGGTTAGC+AGG + chr3_3:59299288-59299307 None:intergenic 75.0%
! TAACGGGTGCCCCGGGGCAC+TGG + chr3_3:59299437-59299456 None:intergenic 75.0%
!! GTCCCGGGGCACCGGTTAGC+AGG + chr3_3:59299288-59299307 None:intergenic 75.0%
! TAACGGGTGCCCCGGGGCAC+TGG + chr3_3:59299437-59299456 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 59298958 59300051 59298958 ID=Msa0461190;Name=Msa0461190
chr3_3 mRNA 59298958 59300051 59298958 ID=Msa0461190-mRNA-1;Parent=Msa0461190;Name=Msa0461190-mRNA-1;_AED=0.25;_eAED=0.25;_QI=59|1|1|1|1|1|2|154|136
chr3_3 exon 59298958 59299470 59298958 ID=Msa0461190-mRNA-1:exon:12325;Parent=Msa0461190-mRNA-1
chr3_3 exon 59299941 59300051 59299941 ID=Msa0461190-mRNA-1:exon:12324;Parent=Msa0461190-mRNA-1
chr3_3 five_prime_UTR 59299993 59300051 59299993 ID=Msa0461190-mRNA-1:five_prime_utr;Parent=Msa0461190-mRNA-1
chr3_3 CDS 59299941 59299992 59299941 ID=Msa0461190-mRNA-1:cds;Parent=Msa0461190-mRNA-1
chr3_3 CDS 59299112 59299470 59299112 ID=Msa0461190-mRNA-1:cds;Parent=Msa0461190-mRNA-1
chr3_3 three_prime_UTR 59298958 59299111 59298958 ID=Msa0461190-mRNA-1:three_prime_utr;Parent=Msa0461190-mRNA-1
Gene Sequence

>Msa0461190

ATGGCTAATGTTAGGCTTGCTTCTTTTGCTGTCTTCTTGCTTGCTGTATTCGTAATGTTCTCGATGAAGAAAATAGAAGGAGGAAAGTGTGGGGAGGCTTGCGACACGCAATTTAATTTTTGTGACGCTGGTGATGGCTGTCGTTGCTTTGTCACGGGTGTTTTGACTCAGCCTGGTTGGTGCGCCACACTTCTTTCTATTAAAAAGAAGGTTGAGGAACTACCTAACTTATGTTGGTCTCATGCTGAATGCATAAGAAAGGGTAGTGGGAATTATTGTGCTCATCTTCCTAATTCTGATATCAAATATGGCTTCTGTTTTGCCTCTATCTCTGAAGCAGAAGACTCATTCAAGATGGCAGCTAGCACTATATTCAAAAGAGACTTCTTGAAGATGTCTGTTTCTGCTTAA
Protein sequence

>Msa0461190

MANVRLASFAVFLLAVFVMFSMKKIEGGKCGEACDTQFNFCDAGDGCRCFVTGVLTQPGWCATLLSIKKKVEELPNLCWSHAECIRKGSGNYCAHLPNSDIKYGFCFASISEAEDSFKMAASTIFKRDFLKMSVSA*