AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0106540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106540 MtrunA17_Chr1g0162571 96.289 485 18 0 1 485 1 485 0.0 962
Msa0106540 MtrunA17_Chr4g0034141 66.186 485 160 3 1 485 1 481 0.0 677
Msa0106540 MtrunA17_Chr3g0141271 54.008 474 209 7 13 482 89 557 7.00e-178 510
Msa0106540 MtrunA17_Chr1g0154381 49.791 478 232 6 8 483 52 523 7.06e-170 489
Msa0106540 MtrunA17_Chr1g0162581 82.869 251 39 1 1 247 1 251 6.55e-153 435
Msa0106540 MtrunA17_Chr1g0162591 80.992 242 46 0 244 485 3 244 5.58e-147 420
Msa0106540 MtrunA17_Chr2g0322321 38.819 474 269 8 14 482 22 479 4.02e-107 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0106540 AT5G42650.1 49.789 474 231 5 12 483 49 517 1.83e-168 485
Msa0106540 AT4G15440.1 40.409 391 220 5 94 482 4 383 1.15e-88 276

Find 96 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTGAAGATGGGCTTTC+TGG 0.162729 1_3:+15998638 Msa0106540:CDS
CTTGCTCCACTTGCAACTTT+AGG 0.254713 1_3:+15998809 Msa0106540:CDS
TCAAGATAATTGAAAATCTT+AGG 0.276501 1_3:-15998836 None:intergenic
TTTCTATGGGTTAATTGGTT+TGG 0.354085 1_3:-15998120 None:intergenic
TGCTATGACTCTTGGGTTTG+AGG 0.356639 1_3:-15998375 None:intergenic
TTCATAGAGCTTCTTGTAAG+AGG 0.382252 1_3:-16000109 None:intergenic
GTCCTAAAATGTTTGATACT+TGG 0.383207 1_3:+15998774 Msa0106540:CDS
GGATTGGGAATTGATTCTTT+AGG 0.384415 1_3:-16000245 None:intergenic
AGAAGAATTTGTCTCTTCCT+TGG 0.393328 1_3:-15998286 None:intergenic
TTGTGGCGAAAAGGTTTGTT+GGG 0.398673 1_3:+16000574 Msa0106540:CDS
CCAATCCTCTTCAAATGGTT+AGG 0.410637 1_3:+16000261 Msa0106540:CDS
TTTGTGGCGAAAAGGTTTGT+TGG 0.415748 1_3:+16000573 Msa0106540:CDS
CCTAACCATTTGAAGAGGAT+TGG 0.428897 1_3:-16000261 None:intergenic
CGATGATCCTGAGGTGTTTG+TGG 0.431397 1_3:+16000557 Msa0106540:CDS
TCTAAAAGTGCTATGACTCT+TGG 0.437203 1_3:-15998383 None:intergenic
CTTTCGCCACAAAAGATCCT+AGG 0.437991 1_3:+16000529 Msa0106540:CDS
TATATGTAATTAACAAAGAA+TGG 0.438837 1_3:-16000911 None:intergenic
CTAACCATTTGAAGAGGATT+GGG 0.438902 1_3:-16000260 None:intergenic
CTGAGGTGTTTGTGGCGAAA+AGG 0.446198 1_3:+16000565 Msa0106540:CDS
CTAAAAGTGCTATGACTCTT+GGG 0.446715 1_3:-15998382 None:intergenic
CCTTTCCTGCTTGTTTGACA+AGG 0.452440 1_3:+15998882 Msa0106540:CDS
AATTCCCAATCCTCTTCAAA+TGG 0.458136 1_3:+16000256 Msa0106540:CDS
AAAGGGAGGCCATAGCTGCC+TGG 0.458877 1_3:-15998224 None:intergenic
CCTTTGATAAGTGCATGGTT+TGG 0.464225 1_3:-15998536 None:intergenic
CAAAGATCGGTCCGATGAAA+GGG 0.467580 1_3:-15998241 None:intergenic
GCGGAGAATAAGCAATGTCC+TGG 0.477764 1_3:+16000660 Msa0106540:CDS
AAACAAATCCCAGGCAGCTA+TGG 0.478988 1_3:+15998215 Msa0106540:CDS
TCTTGGGTTTGAGGAAATGA+AGG 0.480085 1_3:-15998366 None:intergenic
GCATATTGATAAGGCACAGC+AGG 0.481391 1_3:-16000423 None:intergenic
TCAAAGATCGGTCCGATGAA+AGG 0.483475 1_3:-15998242 None:intergenic
GGTTTGGTTCAGTTGTGTCT+AGG 0.483967 1_3:-15998520 None:intergenic
CCTTGTCAAACAAGCAGGAA+AGG 0.488909 1_3:-15998882 None:intergenic
TAGTGGGAGCTCTTTGTTGG+TGG 0.491046 1_3:-15998192 None:intergenic
TTTGTGTAGATTGTTATTGG+TGG 0.498822 1_3:+16000701 Msa0106540:CDS
GCACAACATTCCACTCCAAA+AGG 0.500433 1_3:-16000866 None:intergenic
GAAACTATCCTTGGTGATCA+AGG 0.500468 1_3:+15998752 Msa0106540:CDS
AACCCTTCTGAAACTATCCT+TGG 0.510155 1_3:+15998743 Msa0106540:CDS
TTCAGAACCAACATGCCTCC+AGG 0.517385 1_3:+15998341 Msa0106540:CDS
AATTCAAACACTAGAAGCCT+TGG 0.519083 1_3:-16000805 None:intergenic
CGGGGTAACAATTCAGTCGT+TGG 0.523983 1_3:+16000350 Msa0106540:CDS
GATGGGCTTTCTGGTAAAAG+TGG 0.524979 1_3:+15998647 Msa0106540:CDS
CATTGCTTATTCTCCGCTGA+AGG 0.529891 1_3:-16000654 None:intergenic
AGCTATGGCCTCCCTTTCAT+CGG 0.539465 1_3:+15998230 Msa0106540:CDS
TAGACAACTGATTTAACTAA+CGG 0.540239 1_3:-16000381 None:intergenic
AAGGGAGGCCATAGCTGCCT+GGG 0.542022 1_3:-15998223 None:intergenic
TAGTCGTGTCGGTCAAAGAT+CGG 0.543279 1_3:-15998254 None:intergenic
TTTAAGACTATACTTTCTGA+TGG 0.546680 1_3:+15998608 Msa0106540:CDS
CCGTGGTAAAACAAGAAGGC+GGG 0.547105 1_3:+16000331 Msa0106540:CDS
CCAAACCATGCACTTATCAA+AGG 0.547827 1_3:+15998536 Msa0106540:CDS
ACCGCAGGCTTCAACGCATA+CGG 0.548311 1_3:+16000219 Msa0106540:CDS
CTTGTCAAACAAGCAGGAAA+GGG 0.552808 1_3:-15998881 None:intergenic
GCGAAAAGGTTTGTTGGGGA+AGG 0.554378 1_3:+16000579 Msa0106540:CDS
AAAGTATAGTCTTAAAGAGA+GGG 0.558116 1_3:-15998601 None:intergenic
GAAAGTATAGTCTTAAAGAG+AGG 0.560352 1_3:-15998602 None:intergenic
CACGACTACTTCTACAACCA+AGG 0.569461 1_3:+15998269 Msa0106540:CDS
AGCCTTGGTGAGTGAAGTAA+TGG 0.570221 1_3:-16000790 None:intergenic
AGAAACCTTTGATAAGTGCA+TGG 0.573003 1_3:-15998541 None:intergenic
TTTCGCCACAAAAGATCCTA+GGG 0.574619 1_3:+16000530 Msa0106540:CDS
TCTCACCTTGTCAAACAAGC+AGG 0.589767 1_3:-15998887 None:intergenic
ACGAACCTAACCATTTGAAG+AGG 0.591274 1_3:-16000266 None:intergenic
TCAATATGCAAAAGCAAGAG+AGG 0.593501 1_3:+16000437 Msa0106540:CDS
GAAGGGACCTGGAGGCATGT+TGG 0.593712 1_3:-15998348 None:intergenic
TCACCAAGGATAGTTTCAGA+AGG 0.597461 1_3:-15998746 None:intergenic
AGCACAACAAGATTCTTCCC+AGG 0.597965 1_3:-16000678 None:intergenic
TCAGGATCATCGAAAACCCT+AGG 0.598482 1_3:-16000546 None:intergenic
CACCAAGGATAGTTTCAGAA+GGG 0.600780 1_3:-15998745 None:intergenic
AGATAATTGAAAATCTTAGG+AGG 0.601465 1_3:-15998833 None:intergenic
TTTGAGGAAATGAAGGGACC+TGG 0.609736 1_3:-15998359 None:intergenic
AGCACATACACGGTAACCAC+CGG 0.615577 1_3:-15998495 None:intergenic
ATCAAGAGTTTCATCAACCA+TGG 0.616420 1_3:+15998145 Msa0106540:exon
TTCAAATGGTTAGGTTCGTG+CGG 0.618289 1_3:+16000270 Msa0106540:CDS
TACCATTACTTCACTCACCA+AGG 0.619737 1_3:+16000788 Msa0106540:CDS
CTCCCACTAAAACAAATCCC+AGG 0.620738 1_3:+15998206 Msa0106540:CDS
GGAGGTCCTAAAGTTGCAAG+TGG 0.621056 1_3:-15998815 None:intergenic
GGTGAAAATGATATTGTGGC+AGG 0.623250 1_3:-16000199 None:intergenic
ATGCCGTCGACAAAATTCAC+CGG 0.626098 1_3:+15998476 Msa0106540:CDS
CGGAGAATAAGCAATGTCCT+GGG 0.627055 1_3:+16000661 Msa0106540:CDS
CTTGGGTTTGAGGAAATGAA+GGG 0.627221 1_3:-15998365 None:intergenic
AGAACCGTGGTAAAACAAGA+AGG 0.628597 1_3:+16000327 Msa0106540:CDS
CGTGGTAAAACAAGAAGGCG+GGG 0.636206 1_3:+16000332 Msa0106540:CDS
ACCGTATGCGTTGAAGCCTG+CGG 0.636771 1_3:-16000220 None:intergenic
AGATCGGTCCGATGAAAGGG+AGG 0.641720 1_3:-15998238 None:intergenic
GGTTGTAGAAGTAGTCGTGT+CGG 0.648313 1_3:-15998265 None:intergenic
ACGGCATGAAAGTGCCGTCG+AGG 0.649630 1_3:-15998460 None:intergenic
AGAAACTGAAGAGCCTTCAG+CGG 0.651912 1_3:+16000641 Msa0106540:CDS
GAAGAGGATCGGGAAAGATG+CGG 0.653874 1_3:-15998408 None:intergenic
CTGCGGTGAAAATGATATTG+TGG 0.674126 1_3:-16000203 None:intergenic
TGTGGCGAAAAGGTTTGTTG+GGG 0.675322 1_3:+16000575 Msa0106540:CDS
GAGGAAATGAAGGGACCTGG+AGG 0.681898 1_3:-15998356 None:intergenic
ACCGTGGTAAAACAAGAAGG+CGG 0.694175 1_3:+16000330 Msa0106540:CDS
CCGTCGACAAAATTCACCGG+TGG 0.696972 1_3:+15998479 Msa0106540:CDS
TGTCTAGGTAAGCACATACA+CGG 0.697884 1_3:-15998505 None:intergenic
GCAGGCTTCAACGCATACGG+TGG 0.702595 1_3:+16000222 Msa0106540:CDS
AGAGATACACAAAGAACTCG+CGG 0.711179 1_3:+16000296 Msa0106540:CDS
CGCGGACGAGATAAGAACCG+TGG 0.717719 1_3:+16000314 Msa0106540:CDS
ACTTGTGAAGAGTCATGACG+CGG 0.719978 1_3:+16000464 Msa0106540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCACTTTTTTTTTTTTTT+TGG - chr1_3:15999628-15999647 None:intergenic 10.0%
!! AAAAAAAAAAAAAAGTGATA+TGG + chr1_3:15999628-15999647 Msa0106540:intron 10.0%
!!! AAATTAATTGTTCTTTTTTT+GGG + chr1_3:15999707-15999726 Msa0106540:intron 10.0%
!!! ATCAAAATCTAAATATTTTA+AGG + chr1_3:15999984-16000003 Msa0106540:intron 10.0%
!!! AAAGAGTGAATATTTTATTA+AGG + chr1_3:15999207-15999226 Msa0106540:intron 15.0%
!!! AAGAGTGAATATTTTATTAA+GGG + chr1_3:15999208-15999227 Msa0106540:intron 15.0%
!!! GAAATTAATTGTTCTTTTTT+TGG + chr1_3:15999706-15999725 Msa0106540:intron 15.0%
!!! CTTTGTTGTTTTTATAATTA+TGG + chr1_3:15999763-15999782 Msa0106540:intron 15.0%
!! TATATGTAATTAACAAAGAA+TGG - chr1_3:16000914-16000933 None:intergenic 15.0%
!!! AAACTCTTGATATTTTCTAT+GGG - chr1_3:15998136-15998155 None:intergenic 20.0%
!!! AGATTGTTGAATTGTATTTT+TGG - chr1_3:15998322-15998341 None:intergenic 20.0%
!! TCAAGATAATTGAAAATCTT+AGG - chr1_3:15998839-15998858 None:intergenic 20.0%
!! CAAATGCTACAATTAAAAAT+TGG - chr1_3:15999126-15999145 None:intergenic 20.0%
!!! ACTCATTAACTTGATTTTTA+AGG - chr1_3:15999251-15999270 None:intergenic 20.0%
!! AACTAATAACTAAAAAGCAA+TGG + chr1_3:15999523-15999542 Msa0106540:intron 20.0%
!! AAAAAGTGAAAACTATATTG+TGG + chr1_3:15999580-15999599 Msa0106540:intron 20.0%
!! AAAAAGTGATATGGTTATTA+CGG + chr1_3:15999637-15999656 Msa0106540:intron 20.0%
!!! CATGATTTTGATCTTAAATA+AGG - chr1_3:15999850-15999869 None:intergenic 20.0%
!!! CATGAATCTAAATTTTACTT+TGG - chr1_3:15999961-15999980 None:intergenic 20.0%
!! TCTCTAACATTAAATTGTTA+CGG + chr1_3:16000080-16000099 Msa0106540:intron 20.0%
!!! GATATTTTCTATGGGTTAAT+TGG - chr1_3:15998128-15998147 None:intergenic 25.0%
!! GAAACTCTTGATATTTTCTA+TGG - chr1_3:15998137-15998156 None:intergenic 25.0%
!! AAAGTATAGTCTTAAAGAGA+GGG - chr1_3:15998604-15998623 None:intergenic 25.0%
!! TTTAAGACTATACTTTCTGA+TGG + chr1_3:15998608-15998627 Msa0106540:CDS 25.0%
!!! GTTTTAATGAGATTGAAGAT+GGG + chr1_3:15998630-15998649 Msa0106540:CDS 25.0%
!! AACCAAGTATCAAACATTTT+AGG - chr1_3:15998779-15998798 None:intergenic 25.0%
! AGATAATTGAAAATCTTAGG+AGG - chr1_3:15998836-15998855 None:intergenic 25.0%
! CAAAAAGATCCTATGTTTAA+GGG - chr1_3:15998924-15998943 None:intergenic 25.0%
! AAAATCAAGTTAATGAGTCA+AGG + chr1_3:15999253-15999272 Msa0106540:intron 25.0%
! GAAAAACTCAGCTTAATAAA+GGG - chr1_3:15999424-15999443 None:intergenic 25.0%
! AGAAAAACTCAGCTTAATAA+AGG - chr1_3:15999425-15999444 None:intergenic 25.0%
!! AGTTTAAAGTAGTAAGTTTG+TGG + chr1_3:15999473-15999492 Msa0106540:intron 25.0%
! CAAACATAATAATGATGTCT+AGG + chr1_3:15999920-15999939 Msa0106540:intron 25.0%
!! TAGACAACTGATTTAACTAA+CGG - chr1_3:16000384-16000403 None:intergenic 25.0%
! AAAAAGGGTGAAATGATATT+TGG + chr1_3:16000498-16000517 Msa0106540:CDS 25.0%
!!! AGTTGTTGAAGTATGTTTTT+TGG + chr1_3:16000607-16000626 Msa0106540:CDS 25.0%
!!! AAGTATGTTTTTTGGTCTAA+TGG + chr1_3:16000615-16000634 Msa0106540:CDS 25.0%
!!! AGTATGTTTTTTGGTCTAAT+GGG + chr1_3:16000616-16000635 Msa0106540:CDS 25.0%
! TTTCTATGGGTTAATTGGTT+TGG - chr1_3:15998123-15998142 None:intergenic 30.0%
! GAAAGTATAGTCTTAAAGAG+AGG - chr1_3:15998605-15998624 None:intergenic 30.0%
!! GGTTTTAATGAGATTGAAGA+TGG + chr1_3:15998629-15998648 Msa0106540:CDS 30.0%
!! TTTTAACTCTATTGTGAGTG+TGG + chr1_3:15998679-15998698 Msa0106540:CDS 30.0%
GTCCTAAAATGTTTGATACT+TGG + chr1_3:15998774-15998793 Msa0106540:CDS 30.0%
! TGAAGATATTTTGCTACGTA+CGG + chr1_3:15998856-15998875 Msa0106540:CDS 30.0%
CCAAAAAGATCCTATGTTTA+AGG - chr1_3:15998925-15998944 None:intergenic 30.0%
! CCTTAAACATAGGATCTTTT+TGG + chr1_3:15998922-15998941 Msa0106540:intron 30.0%
ATTGTGGTGAAAATGTGATA+TGG + chr1_3:15999596-15999615 Msa0106540:intron 30.0%
! CAAGATAAAAGTTGACTTCT+TGG + chr1_3:15999672-15999691 Msa0106540:intron 30.0%
!! CTTGCTTTTGCATATTGATA+AGG - chr1_3:16000435-16000454 None:intergenic 30.0%
! GCTTTTGTGTAGATTGTTAT+TGG + chr1_3:16000698-16000717 Msa0106540:CDS 30.0%
! TTTGTGTAGATTGTTATTGG+TGG + chr1_3:16000701-16000720 Msa0106540:CDS 30.0%
!!! GAGACTAAAAATGTTGCTTT+TGG + chr1_3:16000756-16000775 Msa0106540:CDS 30.0%
!!! TCTTGTTTTGTTCTTCCTTT+TGG + chr1_3:16000851-16000870 Msa0106540:three_prime_UTR 30.0%
ATCAAGAGTTTCATCAACCA+TGG + chr1_3:15998145-15998164 Msa0106540:exon 35.0%
!!! TTCTTGTTTTGAAGATGCCA+TGG - chr1_3:15998165-15998184 None:intergenic 35.0%
AGAAGAATTTGTCTCTTCCT+TGG - chr1_3:15998289-15998308 None:intergenic 35.0%
!! CTAAAAGTGCTATGACTCTT+GGG - chr1_3:15998385-15998404 None:intergenic 35.0%
!! TCTAAAAGTGCTATGACTCT+TGG - chr1_3:15998386-15998405 None:intergenic 35.0%
!! TTTTTGTTGTCGAAGAGGAT+CGG - chr1_3:15998422-15998441 None:intergenic 35.0%
AGAAACCTTTGATAAGTGCA+TGG - chr1_3:15998544-15998563 None:intergenic 35.0%
! TGACTTCTTGGTCTTTCATT+CGG + chr1_3:15999684-15999703 Msa0106540:intron 35.0%
AACATTAAATTGTTACGGCC+AGG + chr1_3:16000085-16000104 Msa0106540:intron 35.0%
TTCATAGAGCTTCTTGTAAG+AGG - chr1_3:16000112-16000131 None:intergenic 35.0%
TTAAACGAAGCAGAAAAAGC+CGG + chr1_3:16000159-16000178 Msa0106540:CDS 35.0%
! GGATTGGGAATTGATTCTTT+AGG - chr1_3:16000248-16000267 None:intergenic 35.0%
AATTCCCAATCCTCTTCAAA+TGG + chr1_3:16000256-16000275 Msa0106540:CDS 35.0%
CTAACCATTTGAAGAGGATT+GGG - chr1_3:16000263-16000282 None:intergenic 35.0%
TCAATATGCAAAAGCAAGAG+AGG + chr1_3:16000437-16000456 Msa0106540:CDS 35.0%
!!! GCGGCTTTTGAGATAAAAAA+GGG + chr1_3:16000483-16000502 Msa0106540:CDS 35.0%
AATTCAAACACTAGAAGCCT+TGG - chr1_3:16000808-16000827 None:intergenic 35.0%
!! TTTTGTTCTTCCTTTTGGAG+TGG + chr1_3:16000856-16000875 Msa0106540:three_prime_UTR 35.0%
! TTTTAGTGGGAGCTCTTTGT+TGG - chr1_3:15998198-15998217 None:intergenic 40.0%
!!! TGCCTGGGATTTGTTTTAGT+GGG - chr1_3:15998211-15998230 None:intergenic 40.0%
CTTGGGTTTGAGGAAATGAA+GGG - chr1_3:15998368-15998387 None:intergenic 40.0%
TCTTGGGTTTGAGGAAATGA+AGG - chr1_3:15998369-15998388 None:intergenic 40.0%
!! TTTTGTTGTCGAAGAGGATC+GGG - chr1_3:15998421-15998440 None:intergenic 40.0%
!!! CGACTTTTTTGTTGTCGAAG+AGG - chr1_3:15998427-15998446 None:intergenic 40.0%
TGTCTAGGTAAGCACATACA+CGG - chr1_3:15998508-15998527 None:intergenic 40.0%
CCTTTGATAAGTGCATGGTT+TGG - chr1_3:15998539-15998558 None:intergenic 40.0%
CCAAACCATGCACTTATCAA+AGG + chr1_3:15998536-15998555 Msa0106540:CDS 40.0%
!! AACCCTTCTGAAACTATCCT+TGG + chr1_3:15998743-15998762 Msa0106540:CDS 40.0%
CACCAAGGATAGTTTCAGAA+GGG - chr1_3:15998748-15998767 None:intergenic 40.0%
TCACCAAGGATAGTTTCAGA+AGG - chr1_3:15998749-15998768 None:intergenic 40.0%
! GAAACTATCCTTGGTGATCA+AGG + chr1_3:15998752-15998771 Msa0106540:CDS 40.0%
!!! TTTTAGGACCTTGATCACCA+AGG - chr1_3:15998763-15998782 None:intergenic 40.0%
CTTGTCAAACAAGCAGGAAA+GGG - chr1_3:15998884-15998903 None:intergenic 40.0%
CATACCACACCCTTAAACAT+AGG + chr1_3:15998912-15998931 Msa0106540:intron 40.0%
AGATCCTATGTTTAAGGGTG+TGG - chr1_3:15998919-15998938 None:intergenic 40.0%
TTGCTTAACATGTGCCCTAA+TGG + chr1_3:15999382-15999401 Msa0106540:intron 40.0%
TGCTTAACATGTGCCCTAAT+GGG + chr1_3:15999383-15999402 Msa0106540:intron 40.0%
! GGCTTCGCTTCTTTTTAAAC+CGG - chr1_3:16000181-16000200 None:intergenic 40.0%
GGTGAAAATGATATTGTGGC+AGG - chr1_3:16000202-16000221 None:intergenic 40.0%
CTGCGGTGAAAATGATATTG+TGG - chr1_3:16000206-16000225 None:intergenic 40.0%
! CACAATATCATTTTCACCGC+AGG + chr1_3:16000204-16000223 Msa0106540:CDS 40.0%
CCTAACCATTTGAAGAGGAT+TGG - chr1_3:16000264-16000283 None:intergenic 40.0%
CCAATCCTCTTCAAATGGTT+AGG + chr1_3:16000261-16000280 Msa0106540:CDS 40.0%
ACGAACCTAACCATTTGAAG+AGG - chr1_3:16000269-16000288 None:intergenic 40.0%
TTCAAATGGTTAGGTTCGTG+CGG + chr1_3:16000270-16000289 Msa0106540:CDS 40.0%
AGAGATACACAAAGAACTCG+CGG + chr1_3:16000296-16000315 Msa0106540:CDS 40.0%
AGAACCGTGGTAAAACAAGA+AGG + chr1_3:16000327-16000346 Msa0106540:CDS 40.0%
!!! CGCGGCTTTTGAGATAAAAA+AGG + chr1_3:16000482-16000501 Msa0106540:CDS 40.0%
TTTCGCCACAAAAGATCCTA+GGG + chr1_3:16000530-16000549 Msa0106540:CDS 40.0%
! GAAAACCCTAGGATCTTTTG+TGG - chr1_3:16000538-16000557 None:intergenic 40.0%
TTTGTGGCGAAAAGGTTTGT+TGG + chr1_3:16000573-16000592 Msa0106540:CDS 40.0%
! TTGTGGCGAAAAGGTTTGTT+GGG + chr1_3:16000574-16000593 Msa0106540:CDS 40.0%
TACCATTACTTCACTCACCA+AGG + chr1_3:16000788-16000807 Msa0106540:CDS 40.0%
CTCCCACTAAAACAAATCCC+AGG + chr1_3:15998206-15998225 Msa0106540:CDS 45.0%
!!! CTGCCTGGGATTTGTTTTAG+TGG - chr1_3:15998212-15998231 None:intergenic 45.0%
AAACAAATCCCAGGCAGCTA+TGG + chr1_3:15998215-15998234 Msa0106540:CDS 45.0%
CAAAGATCGGTCCGATGAAA+GGG - chr1_3:15998244-15998263 None:intergenic 45.0%
TCAAAGATCGGTCCGATGAA+AGG - chr1_3:15998245-15998264 None:intergenic 45.0%
! TAGTCGTGTCGGTCAAAGAT+CGG - chr1_3:15998257-15998276 None:intergenic 45.0%
GGTTGTAGAAGTAGTCGTGT+CGG - chr1_3:15998268-15998287 None:intergenic 45.0%
CACGACTACTTCTACAACCA+AGG + chr1_3:15998269-15998288 Msa0106540:CDS 45.0%
TTTGAGGAAATGAAGGGACC+TGG - chr1_3:15998362-15998381 None:intergenic 45.0%
TGCTATGACTCTTGGGTTTG+AGG - chr1_3:15998378-15998397 None:intergenic 45.0%
GAAAAACTCAACGTCCTCGA+CGG + chr1_3:15998446-15998465 Msa0106540:CDS 45.0%
ATGCCGTCGACAAAATTCAC+CGG + chr1_3:15998476-15998495 Msa0106540:CDS 45.0%
! GGTTTGGTTCAGTTGTGTCT+AGG - chr1_3:15998523-15998542 None:intergenic 45.0%
! GAGATTGAAGATGGGCTTTC+TGG + chr1_3:15998638-15998657 Msa0106540:CDS 45.0%
! GATGGGCTTTCTGGTAAAAG+TGG + chr1_3:15998647-15998666 Msa0106540:CDS 45.0%
CTTGCTCCACTTGCAACTTT+AGG + chr1_3:15998809-15998828 Msa0106540:CDS 45.0%
CCTTGTCAAACAAGCAGGAA+AGG - chr1_3:15998885-15998904 None:intergenic 45.0%
CCTTTCCTGCTTGTTTGACA+AGG + chr1_3:15998882-15998901 Msa0106540:CDS 45.0%
TCTCACCTTGTCAAACAAGC+AGG - chr1_3:15998890-15998909 None:intergenic 45.0%
! GTGCTAACTTGTGCCCATTA+GGG - chr1_3:15999399-15999418 None:intergenic 45.0%
ACCGTGGTAAAACAAGAAGG+CGG + chr1_3:16000330-16000349 Msa0106540:CDS 45.0%
GCATATTGATAAGGCACAGC+AGG - chr1_3:16000426-16000445 None:intergenic 45.0%
ACTTGTGAAGAGTCATGACG+CGG + chr1_3:16000464-16000483 Msa0106540:CDS 45.0%
! GATCTTTTGTGGCGAAAGGT+TGG - chr1_3:16000527-16000546 None:intergenic 45.0%
! CTAGGATCTTTTGTGGCGAA+AGG - chr1_3:16000531-16000550 None:intergenic 45.0%
CTTTCGCCACAAAAGATCCT+AGG + chr1_3:16000529-16000548 Msa0106540:CDS 45.0%
TCAGGATCATCGAAAACCCT+AGG - chr1_3:16000549-16000568 None:intergenic 45.0%
! TAGGGTTTTCGATGATCCTG+AGG + chr1_3:16000548-16000567 Msa0106540:CDS 45.0%
!! TGTGGCGAAAAGGTTTGTTG+GGG + chr1_3:16000575-16000594 Msa0106540:CDS 45.0%
AGAAACTGAAGAGCCTTCAG+CGG + chr1_3:16000641-16000660 Msa0106540:CDS 45.0%
CATTGCTTATTCTCCGCTGA+AGG - chr1_3:16000657-16000676 None:intergenic 45.0%
CGGAGAATAAGCAATGTCCT+GGG + chr1_3:16000661-16000680 Msa0106540:CDS 45.0%
AGCACAACAAGATTCTTCCC+AGG - chr1_3:16000681-16000700 None:intergenic 45.0%
AGCCTTGGTGAGTGAAGTAA+TGG - chr1_3:16000793-16000812 None:intergenic 45.0%
GCACAACATTCCACTCCAAA+AGG - chr1_3:16000869-16000888 None:intergenic 45.0%
!!! TAATTTTATCAATATATAAT+TGG - chr1_3:15999065-15999084 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTACTTT+TGG + chr1_3:15999358-15999377 Msa0106540:intron 5.0%
!!! TTTTTTTTTTTTTTACTTTT+GGG + chr1_3:15999359-15999378 Msa0106540:intron 5.0%
TAGTGGGAGCTCTTTGTTGG+TGG - chr1_3:15998195-15998214 None:intergenic 50.0%
AGCTATGGCCTCCCTTTCAT+CGG + chr1_3:15998230-15998249 Msa0106540:CDS 50.0%
TTCAGAACCAACATGCCTCC+AGG + chr1_3:15998341-15998360 Msa0106540:CDS 50.0%
GAAGAGGATCGGGAAAGATG+CGG - chr1_3:15998411-15998430 None:intergenic 50.0%
! CCACCGGTGAATTTTGTCGA+CGG - chr1_3:15998482-15998501 None:intergenic 50.0%
AGCACATACACGGTAACCAC+CGG - chr1_3:15998498-15998517 None:intergenic 50.0%
GGAGGTCCTAAAGTTGCAAG+TGG - chr1_3:15998818-15998837 None:intergenic 50.0%
! CGTGCTAACTTGTGCCCATT+AGG - chr1_3:15999400-15999419 None:intergenic 50.0%
GAGCTTCTTGTAAGAGGACC+TGG - chr1_3:16000106-16000125 None:intergenic 50.0%
!!! CCCGCCTTCTTGTTTTACCA+CGG - chr1_3:16000334-16000353 None:intergenic 50.0%
CCGTGGTAAAACAAGAAGGC+GGG + chr1_3:16000331-16000350 Msa0106540:CDS 50.0%
CGTGGTAAAACAAGAAGGCG+GGG + chr1_3:16000332-16000351 Msa0106540:CDS 50.0%
CGGGGTAACAATTCAGTCGT+TGG + chr1_3:16000350-16000369 Msa0106540:CDS 50.0%
! CGATGATCCTGAGGTGTTTG+TGG + chr1_3:16000557-16000576 Msa0106540:CDS 50.0%
! CTTTTCGCCACAAACACCTC+AGG - chr1_3:16000567-16000586 None:intergenic 50.0%
! CTGAGGTGTTTGTGGCGAAA+AGG + chr1_3:16000565-16000584 Msa0106540:CDS 50.0%
!! GCGAAAAGGTTTGTTGGGGA+AGG + chr1_3:16000579-16000598 Msa0106540:CDS 50.0%
GCGGAGAATAAGCAATGTCC+TGG + chr1_3:16000660-16000679 Msa0106540:CDS 50.0%
AGATCGGTCCGATGAAAGGG+AGG - chr1_3:15998241-15998260 None:intergenic 55.0%
GAGGAAATGAAGGGACCTGG+AGG - chr1_3:15998359-15998378 None:intergenic 55.0%
CCGTCGACAAAATTCACCGG+TGG + chr1_3:15998479-15998498 Msa0106540:CDS 55.0%
ACCGCAGGCTTCAACGCATA+CGG + chr1_3:16000219-16000238 Msa0106540:CDS 55.0%
ACCGTATGCGTTGAAGCCTG+CGG - chr1_3:16000223-16000242 None:intergenic 55.0%
AAGGGAGGCCATAGCTGCCT+GGG - chr1_3:15998226-15998245 None:intergenic 60.0%
AAAGGGAGGCCATAGCTGCC+TGG - chr1_3:15998227-15998246 None:intergenic 60.0%
! GAAGGGACCTGGAGGCATGT+TGG - chr1_3:15998351-15998370 None:intergenic 60.0%
!! ACGGCATGAAAGTGCCGTCG+AGG - chr1_3:15998463-15998482 None:intergenic 60.0%
GCAGGCTTCAACGCATACGG+TGG + chr1_3:16000222-16000241 Msa0106540:CDS 60.0%
CGCGGACGAGATAAGAACCG+TGG + chr1_3:16000314-16000333 Msa0106540:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 15998111 16000986 15998111 ID=Msa0106540;Name=Msa0106540
chr1_3 mRNA 15998111 16000986 15998111 ID=Msa0106540-mRNA-1;Parent=Msa0106540;Name=Msa0106540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=53|1|1|1|1|1|2|162|485
chr1_3 exon 15998111 15998903 15998111 ID=Msa0106540-mRNA-1:exon:6064;Parent=Msa0106540-mRNA-1
chr1_3 exon 16000107 16000986 16000107 ID=Msa0106540-mRNA-1:exon:6065;Parent=Msa0106540-mRNA-1
chr1_3 five_prime_UTR 15998111 15998163 15998111 ID=Msa0106540-mRNA-1:five_prime_utr;Parent=Msa0106540-mRNA-1
chr1_3 CDS 15998164 15998903 15998164 ID=Msa0106540-mRNA-1:cds;Parent=Msa0106540-mRNA-1
chr1_3 CDS 16000107 16000824 16000107 ID=Msa0106540-mRNA-1:cds;Parent=Msa0106540-mRNA-1
chr1_3 three_prime_UTR 16000825 16000986 16000825 ID=Msa0106540-mRNA-1:three_prime_utr;Parent=Msa0106540-mRNA-1
Gene Sequence

>Msa0106540

ATGGCATCTTCAAAACAAGAACAATCTTCCACCAACAAAGAGCTCCCACTAAAACAAATCCCAGGCAGCTATGGCCTCCCTTTCATCGGACCGATCTTTGACCGACACGACTACTTCTACAACCAAGGAAGAGACAAATTCTTCTCAACAAGAATCCAAAAATACAATTCAACAATCTTCAGAACCAACATGCCTCCAGGTCCCTTCATTTCCTCAAACCCAAGAGTCATAGCACTTTTAGACGCCGCATCTTTCCCGATCCTCTTCGACAACAAAAAAGTCGAAAAACTCAACGTCCTCGACGGCACTTTCATGCCGTCGACAAAATTCACCGGTGGTTACCGTGTATGTGCTTACCTAGACACAACTGAACCAAACCATGCACTTATCAAAGGTTTCTATCTTAATACTCTTTTATTAAGAAAAGACTCTTTTATCCCTCTCTTTAAGACTATACTTTCTGATGGTTTTAATGAGATTGAAGATGGGCTTTCTGGTAAAAGTGGTAAAGCTGATTTTAACTCTATTGTGAGTGTGGCTTCGTTTAACTTCATGTTTAAGCTTTTTTGTGATAATAAGAACCCTTCTGAAACTATCCTTGGTGATCAAGGTCCTAAAATGTTTGATACTTGGTTACTCTTTCAACTTGCTCCACTTGCAACTTTAGGACCTCCTAAGATTTTCAATTATCTTGAAGATATTTTGCTACGTACGGTGCCCTTTCCTGCTTGTTTGACAAGGTCCTCTTACAAGAAGCTCTATGAAGCATTTTCTACTTCAGCTACAACAATTTTAAACGAAGCAGAAAAAGCCGGTTTAAAAAGAAGCGAAGCCTGCCACAATATCATTTTCACCGCAGGCTTCAACGCATACGGTGGCCTAAAGAATCAATTCCCAATCCTCTTCAAATGGTTAGGTTCGTGCGGCGAAGAGATACACAAAGAACTCGCGGACGAGATAAGAACCGTGGTAAAACAAGAAGGCGGGGTAACAATTCAGTCGTTGGAAAAAATGCCGTTAGTTAAATCAGTTGTCTATGAAGCGATGCGAATTGAACCTGCTGTGCCTTATCAATATGCAAAAGCAAGAGAGGATTTACTTGTGAAGAGTCATGACGCGGCTTTTGAGATAAAAAAGGGTGAAATGATATTTGGATACCAACCTTTCGCCACAAAAGATCCTAGGGTTTTCGATGATCCTGAGGTGTTTGTGGCGAAAAGGTTTGTTGGGGAAGGTGCTAAGTTGTTGAAGTATGTTTTTTGGTCTAATGGGAAAGAAACTGAAGAGCCTTCAGCGGAGAATAAGCAATGTCCTGGGAAGAATCTTGTTGTGCTTTTGTGTAGATTGTTATTGGTGGAGTTTTTCTTGCGTTATGATACTTTTGAGATTGAGACTAAAAATGTTGCTTTTGGTGCTTCTGTTACCATTACTTCACTCACCAAGGCTTCTAGTGTTTGA

Protein sequence

>Msa0106540

MASSKQEQSSTNKELPLKQIPGSYGLPFIGPIFDRHDYFYNQGRDKFFSTRIQKYNSTIFRTNMPPGPFISSNPRVIALLDAASFPILFDNKKVEKLNVLDGTFMPSTKFTGGYRVCAYLDTTEPNHALIKGFYLNTLLLRKDSFIPLFKTILSDGFNEIEDGLSGKSGKADFNSIVSVASFNFMFKLFCDNKNPSETILGDQGPKMFDTWLLFQLAPLATLGPPKIFNYLEDILLRTVPFPACLTRSSYKKLYEAFSTSATTILNEAEKAGLKRSEACHNIIFTAGFNAYGGLKNQFPILFKWLGSCGEEIHKELADEIRTVVKQEGGVTIQSLEKMPLVKSVVYEAMRIEPAVPYQYAKAREDLLVKSHDAAFEIKKGEMIFGYQPFATKDPRVFDDPEVFVAKRFVGEGAKLLKYVFWSNGKETEEPSAENKQCPGKNLVVLLCRLLLVEFFLRYDTFEIETKNVAFGASVTITSLTKASSV*