AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1405830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405830 MtrunA17_Chr1g0162571 96.289 485 18 0 1 485 1 485 0.0 962
Msa1405830 MtrunA17_Chr4g0034141 66.186 485 160 3 1 485 1 481 0.0 677
Msa1405830 MtrunA17_Chr3g0141271 54.008 474 209 7 13 482 89 557 7.00e-178 510
Msa1405830 MtrunA17_Chr1g0154381 49.791 478 232 6 8 483 52 523 7.06e-170 489
Msa1405830 MtrunA17_Chr1g0162581 82.869 251 39 1 1 247 1 251 6.55e-153 435
Msa1405830 MtrunA17_Chr1g0162591 80.992 242 46 0 244 485 3 244 5.58e-147 420
Msa1405830 MtrunA17_Chr2g0322321 38.819 474 269 8 14 482 22 479 4.02e-107 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405830 AT5G42650.1 49.789 474 231 5 12 483 49 517 1.83e-168 485
Msa1405830 AT4G15440.1 40.409 391 220 5 94 482 4 383 1.15e-88 276

Find 96 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTGAAGATGGGCTTTC+TGG 0.162729 tig0023172:+68208 Msa1405830:CDS
CTTGCTCCACTTGCAACTTT+AGG 0.254713 tig0023172:+68379 Msa1405830:CDS
TCAAGATAATTGAAAATCTT+AGG 0.276501 tig0023172:-68406 None:intergenic
TTTCTATGGGTTAATTGGTT+TGG 0.354085 tig0023172:-67690 None:intergenic
TGCTATGACTCTTGGGTTTG+AGG 0.356639 tig0023172:-67945 None:intergenic
TTCATAGAGCTTCTTGTAAG+AGG 0.382252 tig0023172:-69681 None:intergenic
GTCCTAAAATGTTTGATACT+TGG 0.383207 tig0023172:+68344 Msa1405830:CDS
GGATTGGGAATTGATTCTTT+AGG 0.384415 tig0023172:-69817 None:intergenic
AGAAGAATTTGTCTCTTCCT+TGG 0.393328 tig0023172:-67856 None:intergenic
TTGTGGCGAAAAGGTTTGTT+GGG 0.398673 tig0023172:+70146 Msa1405830:CDS
CCAATCCTCTTCAAATGGTT+AGG 0.410637 tig0023172:+69833 Msa1405830:CDS
TTTGTGGCGAAAAGGTTTGT+TGG 0.415748 tig0023172:+70145 Msa1405830:CDS
CCTAACCATTTGAAGAGGAT+TGG 0.428897 tig0023172:-69833 None:intergenic
CGATGATCCTGAGGTGTTTG+TGG 0.431397 tig0023172:+70129 Msa1405830:CDS
TCTAAAAGTGCTATGACTCT+TGG 0.437203 tig0023172:-67953 None:intergenic
CTTTCGCCACAAAAGATCCT+AGG 0.437991 tig0023172:+70101 Msa1405830:CDS
TATATGTAATTAACAAAGAA+TGG 0.438837 tig0023172:-70483 None:intergenic
CTAACCATTTGAAGAGGATT+GGG 0.438902 tig0023172:-69832 None:intergenic
CTGAGGTGTTTGTGGCGAAA+AGG 0.446198 tig0023172:+70137 Msa1405830:CDS
CTAAAAGTGCTATGACTCTT+GGG 0.446715 tig0023172:-67952 None:intergenic
CCTTTCCTGCTTGTTTGACA+AGG 0.452440 tig0023172:+68452 Msa1405830:CDS
AATTCCCAATCCTCTTCAAA+TGG 0.458136 tig0023172:+69828 Msa1405830:CDS
AAAGGGAGGCCATAGCTGCC+TGG 0.458877 tig0023172:-67794 None:intergenic
CCTTTGATAAGTGCATGGTT+TGG 0.464225 tig0023172:-68106 None:intergenic
CAAAGATCGGTCCGATGAAA+GGG 0.467580 tig0023172:-67811 None:intergenic
GCGGAGAATAAGCAATGTCC+TGG 0.477764 tig0023172:+70232 Msa1405830:CDS
AAACAAATCCCAGGCAGCTA+TGG 0.478988 tig0023172:+67785 Msa1405830:CDS
TCTTGGGTTTGAGGAAATGA+AGG 0.480085 tig0023172:-67936 None:intergenic
GCATATTGATAAGGCACAGC+AGG 0.481391 tig0023172:-69995 None:intergenic
TCAAAGATCGGTCCGATGAA+AGG 0.483475 tig0023172:-67812 None:intergenic
GGTTTGGTTCAGTTGTGTCT+AGG 0.483967 tig0023172:-68090 None:intergenic
CCTTGTCAAACAAGCAGGAA+AGG 0.488909 tig0023172:-68452 None:intergenic
TAGTGGGAGCTCTTTGTTGG+TGG 0.491046 tig0023172:-67762 None:intergenic
TTTGTGTAGATTGTTATTGG+TGG 0.498822 tig0023172:+70273 Msa1405830:CDS
GCACAACATTCCACTCCAAA+AGG 0.500433 tig0023172:-70438 None:intergenic
GAAACTATCCTTGGTGATCA+AGG 0.500468 tig0023172:+68322 Msa1405830:CDS
AACCCTTCTGAAACTATCCT+TGG 0.510155 tig0023172:+68313 Msa1405830:CDS
TTCAGAACCAACATGCCTCC+AGG 0.517385 tig0023172:+67911 Msa1405830:CDS
AATTCAAACACTAGAAGCCT+TGG 0.519083 tig0023172:-70377 None:intergenic
CGGGGTAACAATTCAGTCGT+TGG 0.523983 tig0023172:+69922 Msa1405830:CDS
GATGGGCTTTCTGGTAAAAG+TGG 0.524979 tig0023172:+68217 Msa1405830:CDS
CATTGCTTATTCTCCGCTGA+AGG 0.529891 tig0023172:-70226 None:intergenic
AGCTATGGCCTCCCTTTCAT+CGG 0.539465 tig0023172:+67800 Msa1405830:CDS
TAGACAACTGATTTAACTAA+CGG 0.540239 tig0023172:-69953 None:intergenic
AAGGGAGGCCATAGCTGCCT+GGG 0.542022 tig0023172:-67793 None:intergenic
TAGTCGTGTCGGTCAAAGAT+CGG 0.543279 tig0023172:-67824 None:intergenic
TTTAAGACTATACTTTCTGA+TGG 0.546680 tig0023172:+68178 Msa1405830:CDS
CCGTGGTAAAACAAGAAGGC+GGG 0.547105 tig0023172:+69903 Msa1405830:CDS
CCAAACCATGCACTTATCAA+AGG 0.547827 tig0023172:+68106 Msa1405830:CDS
ACCGCAGGCTTCAACGCATA+CGG 0.548311 tig0023172:+69791 Msa1405830:CDS
CTTGTCAAACAAGCAGGAAA+GGG 0.552808 tig0023172:-68451 None:intergenic
GCGAAAAGGTTTGTTGGGGA+AGG 0.554378 tig0023172:+70151 Msa1405830:CDS
AAAGTATAGTCTTAAAGAGA+GGG 0.558116 tig0023172:-68171 None:intergenic
GAAAGTATAGTCTTAAAGAG+AGG 0.560352 tig0023172:-68172 None:intergenic
CACGACTACTTCTACAACCA+AGG 0.569461 tig0023172:+67839 Msa1405830:CDS
AGCCTTGGTGAGTGAAGTAA+TGG 0.570221 tig0023172:-70362 None:intergenic
AGAAACCTTTGATAAGTGCA+TGG 0.573003 tig0023172:-68111 None:intergenic
TTTCGCCACAAAAGATCCTA+GGG 0.574619 tig0023172:+70102 Msa1405830:CDS
TCTCACCTTGTCAAACAAGC+AGG 0.589767 tig0023172:-68457 None:intergenic
ACGAACCTAACCATTTGAAG+AGG 0.591274 tig0023172:-69838 None:intergenic
TCAATATGCAAAAGCAAGAG+AGG 0.593501 tig0023172:+70009 Msa1405830:CDS
GAAGGGACCTGGAGGCATGT+TGG 0.593712 tig0023172:-67918 None:intergenic
TCACCAAGGATAGTTTCAGA+AGG 0.597461 tig0023172:-68316 None:intergenic
AGCACAACAAGATTCTTCCC+AGG 0.597965 tig0023172:-70250 None:intergenic
TCAGGATCATCGAAAACCCT+AGG 0.598482 tig0023172:-70118 None:intergenic
CACCAAGGATAGTTTCAGAA+GGG 0.600780 tig0023172:-68315 None:intergenic
AGATAATTGAAAATCTTAGG+AGG 0.601465 tig0023172:-68403 None:intergenic
TTTGAGGAAATGAAGGGACC+TGG 0.609736 tig0023172:-67929 None:intergenic
AGCACATACACGGTAACCAC+CGG 0.615577 tig0023172:-68065 None:intergenic
ATCAAGAGTTTCATCAACCA+TGG 0.616420 tig0023172:+67715 Msa1405830:exon
TTCAAATGGTTAGGTTCGTG+CGG 0.618289 tig0023172:+69842 Msa1405830:CDS
TACCATTACTTCACTCACCA+AGG 0.619737 tig0023172:+70360 Msa1405830:CDS
CTCCCACTAAAACAAATCCC+AGG 0.620738 tig0023172:+67776 Msa1405830:CDS
GGAGGTCCTAAAGTTGCAAG+TGG 0.621056 tig0023172:-68385 None:intergenic
GGTGAAAATGATATTGTGGC+AGG 0.623250 tig0023172:-69771 None:intergenic
ATGCCGTCGACAAAATTCAC+CGG 0.626098 tig0023172:+68046 Msa1405830:CDS
CGGAGAATAAGCAATGTCCT+GGG 0.627055 tig0023172:+70233 Msa1405830:CDS
CTTGGGTTTGAGGAAATGAA+GGG 0.627221 tig0023172:-67935 None:intergenic
AGAACCGTGGTAAAACAAGA+AGG 0.628597 tig0023172:+69899 Msa1405830:CDS
CGTGGTAAAACAAGAAGGCG+GGG 0.636206 tig0023172:+69904 Msa1405830:CDS
ACCGTATGCGTTGAAGCCTG+CGG 0.636771 tig0023172:-69792 None:intergenic
AGATCGGTCCGATGAAAGGG+AGG 0.641720 tig0023172:-67808 None:intergenic
GGTTGTAGAAGTAGTCGTGT+CGG 0.648313 tig0023172:-67835 None:intergenic
ACGGCATGAAAGTGCCGTCG+AGG 0.649630 tig0023172:-68030 None:intergenic
AGAAACTGAAGAGCCTTCAG+CGG 0.651912 tig0023172:+70213 Msa1405830:CDS
GAAGAGGATCGGGAAAGATG+CGG 0.653874 tig0023172:-67978 None:intergenic
CTGCGGTGAAAATGATATTG+TGG 0.674126 tig0023172:-69775 None:intergenic
TGTGGCGAAAAGGTTTGTTG+GGG 0.675322 tig0023172:+70147 Msa1405830:CDS
GAGGAAATGAAGGGACCTGG+AGG 0.681898 tig0023172:-67926 None:intergenic
ACCGTGGTAAAACAAGAAGG+CGG 0.694175 tig0023172:+69902 Msa1405830:CDS
CCGTCGACAAAATTCACCGG+TGG 0.696972 tig0023172:+68049 Msa1405830:CDS
TGTCTAGGTAAGCACATACA+CGG 0.697884 tig0023172:-68075 None:intergenic
GCAGGCTTCAACGCATACGG+TGG 0.702595 tig0023172:+69794 Msa1405830:CDS
AGAGATACACAAAGAACTCG+CGG 0.711179 tig0023172:+69868 Msa1405830:CDS
CGCGGACGAGATAAGAACCG+TGG 0.717719 tig0023172:+69886 Msa1405830:CDS
ACTTGTGAAGAGTCATGACG+CGG 0.719978 tig0023172:+70036 Msa1405830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCACTTTTTTTTTTTTTTT+TGG - tig0023172:69199-69218 None:intergenic 10.0%
!! AAAAAAAAAAAAAAGTGATA+TGG + tig0023172:69200-69219 Msa1405830:intron 10.0%
!!! AAATTAATTGTTCTTTTTTT+GGG + tig0023172:69279-69298 Msa1405830:intron 10.0%
!!! ATCAAAATCTAAATATTTTA+AGG + tig0023172:69556-69575 Msa1405830:intron 10.0%
!!! AAAGAGTGAATATTTTATTA+AGG + tig0023172:68777-68796 Msa1405830:intron 15.0%
!!! AAGAGTGAATATTTTATTAA+GGG + tig0023172:68778-68797 Msa1405830:intron 15.0%
!!! GAAATTAATTGTTCTTTTTT+TGG + tig0023172:69278-69297 Msa1405830:intron 15.0%
!!! CTTTGTTGTTTTTATAATTA+TGG + tig0023172:69335-69354 Msa1405830:intron 15.0%
!! TATATGTAATTAACAAAGAA+TGG - tig0023172:70486-70505 None:intergenic 15.0%
!!! AAACTCTTGATATTTTCTAT+GGG - tig0023172:67706-67725 None:intergenic 20.0%
!!! AGATTGTTGAATTGTATTTT+TGG - tig0023172:67892-67911 None:intergenic 20.0%
!! TCAAGATAATTGAAAATCTT+AGG - tig0023172:68409-68428 None:intergenic 20.0%
!! CAAATGCTACAATTAAAAAT+TGG - tig0023172:68696-68715 None:intergenic 20.0%
!!! ACTCATTAACTTGATTTTTA+AGG - tig0023172:68821-68840 None:intergenic 20.0%
!! AACTAATAACTAAAAAGCAA+TGG + tig0023172:69094-69113 Msa1405830:intron 20.0%
!! AAAAAGTGAAAACTATATTG+TGG + tig0023172:69151-69170 Msa1405830:intron 20.0%
!! AAAAAGTGATATGGTTATTA+CGG + tig0023172:69209-69228 Msa1405830:intron 20.0%
!!! CATGATTTTGATCTTAAATA+AGG - tig0023172:69422-69441 None:intergenic 20.0%
!!! CATGAATCTAAATTTTACTT+TGG - tig0023172:69533-69552 None:intergenic 20.0%
!! TCTCTAACATTAAATTGTTA+CGG + tig0023172:69652-69671 Msa1405830:intron 20.0%
!!! GATATTTTCTATGGGTTAAT+TGG - tig0023172:67698-67717 None:intergenic 25.0%
!! GAAACTCTTGATATTTTCTA+TGG - tig0023172:67707-67726 None:intergenic 25.0%
!! AAAGTATAGTCTTAAAGAGA+GGG - tig0023172:68174-68193 None:intergenic 25.0%
!! TTTAAGACTATACTTTCTGA+TGG + tig0023172:68178-68197 Msa1405830:CDS 25.0%
!!! GTTTTAATGAGATTGAAGAT+GGG + tig0023172:68200-68219 Msa1405830:CDS 25.0%
!! AACCAAGTATCAAACATTTT+AGG - tig0023172:68349-68368 None:intergenic 25.0%
! AGATAATTGAAAATCTTAGG+AGG - tig0023172:68406-68425 None:intergenic 25.0%
! CAAAAAGATCCTATGTTTAA+GGG - tig0023172:68494-68513 None:intergenic 25.0%
! AAAATCAAGTTAATGAGTCA+AGG + tig0023172:68823-68842 Msa1405830:intron 25.0%
! GAAAAACTCAGCTTAATAAA+GGG - tig0023172:68995-69014 None:intergenic 25.0%
! AGAAAAACTCAGCTTAATAA+AGG - tig0023172:68996-69015 None:intergenic 25.0%
!! AGTTTAAAGTAGTAAGTTTG+TGG + tig0023172:69044-69063 Msa1405830:intron 25.0%
! CAAACATAATAATGATGTCT+AGG + tig0023172:69492-69511 Msa1405830:intron 25.0%
!! TAGACAACTGATTTAACTAA+CGG - tig0023172:69956-69975 None:intergenic 25.0%
! AAAAAGGGTGAAATGATATT+TGG + tig0023172:70070-70089 Msa1405830:CDS 25.0%
!!! AGTTGTTGAAGTATGTTTTT+TGG + tig0023172:70179-70198 Msa1405830:CDS 25.0%
!!! AAGTATGTTTTTTGGTCTAA+TGG + tig0023172:70187-70206 Msa1405830:CDS 25.0%
!!! AGTATGTTTTTTGGTCTAAT+GGG + tig0023172:70188-70207 Msa1405830:CDS 25.0%
! TTTCTATGGGTTAATTGGTT+TGG - tig0023172:67693-67712 None:intergenic 30.0%
! GAAAGTATAGTCTTAAAGAG+AGG - tig0023172:68175-68194 None:intergenic 30.0%
!! GGTTTTAATGAGATTGAAGA+TGG + tig0023172:68199-68218 Msa1405830:CDS 30.0%
!! TTTTAACTCTATTGTGAGTG+TGG + tig0023172:68249-68268 Msa1405830:CDS 30.0%
GTCCTAAAATGTTTGATACT+TGG + tig0023172:68344-68363 Msa1405830:CDS 30.0%
! TGAAGATATTTTGCTACGTA+CGG + tig0023172:68426-68445 Msa1405830:CDS 30.0%
CCAAAAAGATCCTATGTTTA+AGG - tig0023172:68495-68514 None:intergenic 30.0%
! CCTTAAACATAGGATCTTTT+TGG + tig0023172:68492-68511 Msa1405830:intron 30.0%
ATTGTGGTGAAAATGTGATA+TGG + tig0023172:69167-69186 Msa1405830:intron 30.0%
! CAAGATAAAAGTTGACTTCT+TGG + tig0023172:69244-69263 Msa1405830:intron 30.0%
!! CTTGCTTTTGCATATTGATA+AGG - tig0023172:70007-70026 None:intergenic 30.0%
! GCTTTTGTGTAGATTGTTAT+TGG + tig0023172:70270-70289 Msa1405830:CDS 30.0%
! TTTGTGTAGATTGTTATTGG+TGG + tig0023172:70273-70292 Msa1405830:CDS 30.0%
!!! GAGACTAAAAATGTTGCTTT+TGG + tig0023172:70328-70347 Msa1405830:CDS 30.0%
!!! TCTTGTTTTGTTCTTCCTTT+TGG + tig0023172:70423-70442 Msa1405830:three_prime_UTR 30.0%
ATCAAGAGTTTCATCAACCA+TGG + tig0023172:67715-67734 Msa1405830:exon 35.0%
!!! TTCTTGTTTTGAAGATGCCA+TGG - tig0023172:67735-67754 None:intergenic 35.0%
AGAAGAATTTGTCTCTTCCT+TGG - tig0023172:67859-67878 None:intergenic 35.0%
!! CTAAAAGTGCTATGACTCTT+GGG - tig0023172:67955-67974 None:intergenic 35.0%
!! TCTAAAAGTGCTATGACTCT+TGG - tig0023172:67956-67975 None:intergenic 35.0%
!! TTTTTGTTGTCGAAGAGGAT+CGG - tig0023172:67992-68011 None:intergenic 35.0%
AGAAACCTTTGATAAGTGCA+TGG - tig0023172:68114-68133 None:intergenic 35.0%
! TGACTTCTTGGTCTTTCATT+CGG + tig0023172:69256-69275 Msa1405830:intron 35.0%
AACATTAAATTGTTACGGCC+AGG + tig0023172:69657-69676 Msa1405830:intron 35.0%
TTCATAGAGCTTCTTGTAAG+AGG - tig0023172:69684-69703 None:intergenic 35.0%
TTAAACGAAGCAGAAAAAGC+CGG + tig0023172:69731-69750 Msa1405830:CDS 35.0%
! GGATTGGGAATTGATTCTTT+AGG - tig0023172:69820-69839 None:intergenic 35.0%
AATTCCCAATCCTCTTCAAA+TGG + tig0023172:69828-69847 Msa1405830:CDS 35.0%
CTAACCATTTGAAGAGGATT+GGG - tig0023172:69835-69854 None:intergenic 35.0%
TCAATATGCAAAAGCAAGAG+AGG + tig0023172:70009-70028 Msa1405830:CDS 35.0%
!!! GCGGCTTTTGAGATAAAAAA+GGG + tig0023172:70055-70074 Msa1405830:CDS 35.0%
AATTCAAACACTAGAAGCCT+TGG - tig0023172:70380-70399 None:intergenic 35.0%
!! TTTTGTTCTTCCTTTTGGAG+TGG + tig0023172:70428-70447 Msa1405830:three_prime_UTR 35.0%
! TTTTAGTGGGAGCTCTTTGT+TGG - tig0023172:67768-67787 None:intergenic 40.0%
!!! TGCCTGGGATTTGTTTTAGT+GGG - tig0023172:67781-67800 None:intergenic 40.0%
CTTGGGTTTGAGGAAATGAA+GGG - tig0023172:67938-67957 None:intergenic 40.0%
TCTTGGGTTTGAGGAAATGA+AGG - tig0023172:67939-67958 None:intergenic 40.0%
!! TTTTGTTGTCGAAGAGGATC+GGG - tig0023172:67991-68010 None:intergenic 40.0%
!!! CGACTTTTTTGTTGTCGAAG+AGG - tig0023172:67997-68016 None:intergenic 40.0%
TGTCTAGGTAAGCACATACA+CGG - tig0023172:68078-68097 None:intergenic 40.0%
CCTTTGATAAGTGCATGGTT+TGG - tig0023172:68109-68128 None:intergenic 40.0%
CCAAACCATGCACTTATCAA+AGG + tig0023172:68106-68125 Msa1405830:CDS 40.0%
!! AACCCTTCTGAAACTATCCT+TGG + tig0023172:68313-68332 Msa1405830:CDS 40.0%
CACCAAGGATAGTTTCAGAA+GGG - tig0023172:68318-68337 None:intergenic 40.0%
TCACCAAGGATAGTTTCAGA+AGG - tig0023172:68319-68338 None:intergenic 40.0%
! GAAACTATCCTTGGTGATCA+AGG + tig0023172:68322-68341 Msa1405830:CDS 40.0%
!!! TTTTAGGACCTTGATCACCA+AGG - tig0023172:68333-68352 None:intergenic 40.0%
CTTGTCAAACAAGCAGGAAA+GGG - tig0023172:68454-68473 None:intergenic 40.0%
CATACCACACCCTTAAACAT+AGG + tig0023172:68482-68501 Msa1405830:intron 40.0%
AGATCCTATGTTTAAGGGTG+TGG - tig0023172:68489-68508 None:intergenic 40.0%
TTGCTTAACATGTGCCCTAA+TGG + tig0023172:68953-68972 Msa1405830:intron 40.0%
TGCTTAACATGTGCCCTAAT+GGG + tig0023172:68954-68973 Msa1405830:intron 40.0%
! GGCTTCGCTTCTTTTTAAAC+CGG - tig0023172:69753-69772 None:intergenic 40.0%
GGTGAAAATGATATTGTGGC+AGG - tig0023172:69774-69793 None:intergenic 40.0%
CTGCGGTGAAAATGATATTG+TGG - tig0023172:69778-69797 None:intergenic 40.0%
! CACAATATCATTTTCACCGC+AGG + tig0023172:69776-69795 Msa1405830:CDS 40.0%
CCTAACCATTTGAAGAGGAT+TGG - tig0023172:69836-69855 None:intergenic 40.0%
CCAATCCTCTTCAAATGGTT+AGG + tig0023172:69833-69852 Msa1405830:CDS 40.0%
ACGAACCTAACCATTTGAAG+AGG - tig0023172:69841-69860 None:intergenic 40.0%
TTCAAATGGTTAGGTTCGTG+CGG + tig0023172:69842-69861 Msa1405830:CDS 40.0%
AGAGATACACAAAGAACTCG+CGG + tig0023172:69868-69887 Msa1405830:CDS 40.0%
AGAACCGTGGTAAAACAAGA+AGG + tig0023172:69899-69918 Msa1405830:CDS 40.0%
!!! CGCGGCTTTTGAGATAAAAA+AGG + tig0023172:70054-70073 Msa1405830:CDS 40.0%
TTTCGCCACAAAAGATCCTA+GGG + tig0023172:70102-70121 Msa1405830:CDS 40.0%
! GAAAACCCTAGGATCTTTTG+TGG - tig0023172:70110-70129 None:intergenic 40.0%
TTTGTGGCGAAAAGGTTTGT+TGG + tig0023172:70145-70164 Msa1405830:CDS 40.0%
! TTGTGGCGAAAAGGTTTGTT+GGG + tig0023172:70146-70165 Msa1405830:CDS 40.0%
TACCATTACTTCACTCACCA+AGG + tig0023172:70360-70379 Msa1405830:CDS 40.0%
CTCCCACTAAAACAAATCCC+AGG + tig0023172:67776-67795 Msa1405830:CDS 45.0%
!!! CTGCCTGGGATTTGTTTTAG+TGG - tig0023172:67782-67801 None:intergenic 45.0%
AAACAAATCCCAGGCAGCTA+TGG + tig0023172:67785-67804 Msa1405830:CDS 45.0%
CAAAGATCGGTCCGATGAAA+GGG - tig0023172:67814-67833 None:intergenic 45.0%
TCAAAGATCGGTCCGATGAA+AGG - tig0023172:67815-67834 None:intergenic 45.0%
! TAGTCGTGTCGGTCAAAGAT+CGG - tig0023172:67827-67846 None:intergenic 45.0%
GGTTGTAGAAGTAGTCGTGT+CGG - tig0023172:67838-67857 None:intergenic 45.0%
CACGACTACTTCTACAACCA+AGG + tig0023172:67839-67858 Msa1405830:CDS 45.0%
TTTGAGGAAATGAAGGGACC+TGG - tig0023172:67932-67951 None:intergenic 45.0%
TGCTATGACTCTTGGGTTTG+AGG - tig0023172:67948-67967 None:intergenic 45.0%
GAAAAACTCAACGTCCTCGA+CGG + tig0023172:68016-68035 Msa1405830:CDS 45.0%
ATGCCGTCGACAAAATTCAC+CGG + tig0023172:68046-68065 Msa1405830:CDS 45.0%
! GGTTTGGTTCAGTTGTGTCT+AGG - tig0023172:68093-68112 None:intergenic 45.0%
! GAGATTGAAGATGGGCTTTC+TGG + tig0023172:68208-68227 Msa1405830:CDS 45.0%
! GATGGGCTTTCTGGTAAAAG+TGG + tig0023172:68217-68236 Msa1405830:CDS 45.0%
CTTGCTCCACTTGCAACTTT+AGG + tig0023172:68379-68398 Msa1405830:CDS 45.0%
CCTTGTCAAACAAGCAGGAA+AGG - tig0023172:68455-68474 None:intergenic 45.0%
CCTTTCCTGCTTGTTTGACA+AGG + tig0023172:68452-68471 Msa1405830:CDS 45.0%
TCTCACCTTGTCAAACAAGC+AGG - tig0023172:68460-68479 None:intergenic 45.0%
! GTGCTAACTTGTGCCCATTA+GGG - tig0023172:68970-68989 None:intergenic 45.0%
ACCGTGGTAAAACAAGAAGG+CGG + tig0023172:69902-69921 Msa1405830:CDS 45.0%
GCATATTGATAAGGCACAGC+AGG - tig0023172:69998-70017 None:intergenic 45.0%
ACTTGTGAAGAGTCATGACG+CGG + tig0023172:70036-70055 Msa1405830:CDS 45.0%
! GATCTTTTGTGGCGAAAGGT+TGG - tig0023172:70099-70118 None:intergenic 45.0%
! CTAGGATCTTTTGTGGCGAA+AGG - tig0023172:70103-70122 None:intergenic 45.0%
CTTTCGCCACAAAAGATCCT+AGG + tig0023172:70101-70120 Msa1405830:CDS 45.0%
TCAGGATCATCGAAAACCCT+AGG - tig0023172:70121-70140 None:intergenic 45.0%
! TAGGGTTTTCGATGATCCTG+AGG + tig0023172:70120-70139 Msa1405830:CDS 45.0%
!! TGTGGCGAAAAGGTTTGTTG+GGG + tig0023172:70147-70166 Msa1405830:CDS 45.0%
AGAAACTGAAGAGCCTTCAG+CGG + tig0023172:70213-70232 Msa1405830:CDS 45.0%
CATTGCTTATTCTCCGCTGA+AGG - tig0023172:70229-70248 None:intergenic 45.0%
CGGAGAATAAGCAATGTCCT+GGG + tig0023172:70233-70252 Msa1405830:CDS 45.0%
AGCACAACAAGATTCTTCCC+AGG - tig0023172:70253-70272 None:intergenic 45.0%
AGCCTTGGTGAGTGAAGTAA+TGG - tig0023172:70365-70384 None:intergenic 45.0%
GCACAACATTCCACTCCAAA+AGG - tig0023172:70441-70460 None:intergenic 45.0%
!!! TAATTTTATCAATATATAAT+TGG - tig0023172:68635-68654 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTACTTT+TGG + tig0023172:68929-68948 Msa1405830:intron 5.0%
!!! TTTTTTTTTTTTTTACTTTT+GGG + tig0023172:68930-68949 Msa1405830:intron 5.0%
TAGTGGGAGCTCTTTGTTGG+TGG - tig0023172:67765-67784 None:intergenic 50.0%
AGCTATGGCCTCCCTTTCAT+CGG + tig0023172:67800-67819 Msa1405830:CDS 50.0%
TTCAGAACCAACATGCCTCC+AGG + tig0023172:67911-67930 Msa1405830:CDS 50.0%
GAAGAGGATCGGGAAAGATG+CGG - tig0023172:67981-68000 None:intergenic 50.0%
! CCACCGGTGAATTTTGTCGA+CGG - tig0023172:68052-68071 None:intergenic 50.0%
AGCACATACACGGTAACCAC+CGG - tig0023172:68068-68087 None:intergenic 50.0%
GGAGGTCCTAAAGTTGCAAG+TGG - tig0023172:68388-68407 None:intergenic 50.0%
! CGTGCTAACTTGTGCCCATT+AGG - tig0023172:68971-68990 None:intergenic 50.0%
GAGCTTCTTGTAAGAGGACC+TGG - tig0023172:69678-69697 None:intergenic 50.0%
!!! CCCGCCTTCTTGTTTTACCA+CGG - tig0023172:69906-69925 None:intergenic 50.0%
CCGTGGTAAAACAAGAAGGC+GGG + tig0023172:69903-69922 Msa1405830:CDS 50.0%
CGTGGTAAAACAAGAAGGCG+GGG + tig0023172:69904-69923 Msa1405830:CDS 50.0%
CGGGGTAACAATTCAGTCGT+TGG + tig0023172:69922-69941 Msa1405830:CDS 50.0%
! CGATGATCCTGAGGTGTTTG+TGG + tig0023172:70129-70148 Msa1405830:CDS 50.0%
! CTTTTCGCCACAAACACCTC+AGG - tig0023172:70139-70158 None:intergenic 50.0%
! CTGAGGTGTTTGTGGCGAAA+AGG + tig0023172:70137-70156 Msa1405830:CDS 50.0%
!! GCGAAAAGGTTTGTTGGGGA+AGG + tig0023172:70151-70170 Msa1405830:CDS 50.0%
GCGGAGAATAAGCAATGTCC+TGG + tig0023172:70232-70251 Msa1405830:CDS 50.0%
AGATCGGTCCGATGAAAGGG+AGG - tig0023172:67811-67830 None:intergenic 55.0%
GAGGAAATGAAGGGACCTGG+AGG - tig0023172:67929-67948 None:intergenic 55.0%
CCGTCGACAAAATTCACCGG+TGG + tig0023172:68049-68068 Msa1405830:CDS 55.0%
ACCGCAGGCTTCAACGCATA+CGG + tig0023172:69791-69810 Msa1405830:CDS 55.0%
ACCGTATGCGTTGAAGCCTG+CGG - tig0023172:69795-69814 None:intergenic 55.0%
AAGGGAGGCCATAGCTGCCT+GGG - tig0023172:67796-67815 None:intergenic 60.0%
AAAGGGAGGCCATAGCTGCC+TGG - tig0023172:67797-67816 None:intergenic 60.0%
! GAAGGGACCTGGAGGCATGT+TGG - tig0023172:67921-67940 None:intergenic 60.0%
!! ACGGCATGAAAGTGCCGTCG+AGG - tig0023172:68033-68052 None:intergenic 60.0%
GCAGGCTTCAACGCATACGG+TGG + tig0023172:69794-69813 Msa1405830:CDS 60.0%
CGCGGACGAGATAAGAACCG+TGG + tig0023172:69886-69905 Msa1405830:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0023172 gene 67681 70558 67681 ID=Msa1405830;Name=Msa1405830
tig0023172 mRNA 67681 70558 67681 ID=Msa1405830-mRNA-1;Parent=Msa1405830;Name=Msa1405830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=53|1|1|1|1|1|2|162|485
tig0023172 exon 67681 68473 67681 ID=Msa1405830-mRNA-1:exon:24259;Parent=Msa1405830-mRNA-1
tig0023172 exon 69679 70558 69679 ID=Msa1405830-mRNA-1:exon:24260;Parent=Msa1405830-mRNA-1
tig0023172 five_prime_UTR 67681 67733 67681 ID=Msa1405830-mRNA-1:five_prime_utr;Parent=Msa1405830-mRNA-1
tig0023172 CDS 67734 68473 67734 ID=Msa1405830-mRNA-1:cds;Parent=Msa1405830-mRNA-1
tig0023172 CDS 69679 70396 69679 ID=Msa1405830-mRNA-1:cds;Parent=Msa1405830-mRNA-1
tig0023172 three_prime_UTR 70397 70558 70397 ID=Msa1405830-mRNA-1:three_prime_utr;Parent=Msa1405830-mRNA-1
Gene Sequence

>Msa1405830

ATGGCATCTTCAAAACAAGAACAATCTTCCACCAACAAAGAGCTCCCACTAAAACAAATCCCAGGCAGCTATGGCCTCCCTTTCATCGGACCGATCTTTGACCGACACGACTACTTCTACAACCAAGGAAGAGACAAATTCTTCTCAACAAGAATCCAAAAATACAATTCAACAATCTTCAGAACCAACATGCCTCCAGGTCCCTTCATTTCCTCAAACCCAAGAGTCATAGCACTTTTAGACGCCGCATCTTTCCCGATCCTCTTCGACAACAAAAAAGTCGAAAAACTCAACGTCCTCGACGGCACTTTCATGCCGTCGACAAAATTCACCGGTGGTTACCGTGTATGTGCTTACCTAGACACAACTGAACCAAACCATGCACTTATCAAAGGTTTCTATCTTAATACTCTTTTATTAAGAAAAGACTCTTTTATCCCTCTCTTTAAGACTATACTTTCTGATGGTTTTAATGAGATTGAAGATGGGCTTTCTGGTAAAAGTGGTAAAGCTGATTTTAACTCTATTGTGAGTGTGGCTTCGTTTAACTTCATGTTTAAGCTTTTTTGTGATAATAAGAACCCTTCTGAAACTATCCTTGGTGATCAAGGTCCTAAAATGTTTGATACTTGGTTACTCTTTCAACTTGCTCCACTTGCAACTTTAGGACCTCCTAAGATTTTCAATTATCTTGAAGATATTTTGCTACGTACGGTGCCCTTTCCTGCTTGTTTGACAAGGTCCTCTTACAAGAAGCTCTATGAAGCATTTTCTACTTCAGCTACAACAATTTTAAACGAAGCAGAAAAAGCCGGTTTAAAAAGAAGCGAAGCCTGCCACAATATCATTTTCACCGCAGGCTTCAACGCATACGGTGGCCTAAAGAATCAATTCCCAATCCTCTTCAAATGGTTAGGTTCGTGCGGCGAAGAGATACACAAAGAACTCGCGGACGAGATAAGAACCGTGGTAAAACAAGAAGGCGGGGTAACAATTCAGTCGTTGGAAAAAATGCCGTTAGTTAAATCAGTTGTCTATGAAGCGATGCGAATTGAACCTGCTGTGCCTTATCAATATGCAAAAGCAAGAGAGGATTTACTTGTGAAGAGTCATGACGCGGCTTTTGAGATAAAAAAGGGTGAAATGATATTTGGATACCAACCTTTCGCCACAAAAGATCCTAGGGTTTTCGATGATCCTGAGGTGTTTGTGGCGAAAAGGTTTGTTGGGGAAGGTGCTAAGTTGTTGAAGTATGTTTTTTGGTCTAATGGGAAAGAAACTGAAGAGCCTTCAGCGGAGAATAAGCAATGTCCTGGGAAGAATCTTGTTGTGCTTTTGTGTAGATTGTTATTGGTGGAGTTTTTCTTGCGTTATGATACTTTTGAGATTGAGACTAAAAATGTTGCTTTTGGTGCTTCTGTTACCATTACTTCACTCACCAAGGCTTCTAGTGTTTGA

Protein sequence

>Msa1405830

MASSKQEQSSTNKELPLKQIPGSYGLPFIGPIFDRHDYFYNQGRDKFFSTRIQKYNSTIFRTNMPPGPFISSNPRVIALLDAASFPILFDNKKVEKLNVLDGTFMPSTKFTGGYRVCAYLDTTEPNHALIKGFYLNTLLLRKDSFIPLFKTILSDGFNEIEDGLSGKSGKADFNSIVSVASFNFMFKLFCDNKNPSETILGDQGPKMFDTWLLFQLAPLATLGPPKIFNYLEDILLRTVPFPACLTRSSYKKLYEAFSTSATTILNEAEKAGLKRSEACHNIIFTAGFNAYGGLKNQFPILFKWLGSCGEEIHKELADEIRTVVKQEGGVTIQSLEKMPLVKSVVYEAMRIEPAVPYQYAKAREDLLVKSHDAAFEIKKGEMIFGYQPFATKDPRVFDDPEVFVAKRFVGEGAKLLKYVFWSNGKETEEPSAENKQCPGKNLVVLLCRLLLVEFFLRYDTFEIETKNVAFGASVTITSLTKASSV*