Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461700 | XP_039687154.1 | 84.237 | 590 | 49 | 6 | 63 | 624 | 176 | 749 | 0.0 | 952 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461700 | A0A396IRT2 | 84.237 | 590 | 49 | 6 | 63 | 624 | 176 | 749 | 0.0 | 952 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0461700 | Msa0461730 | 0.869207 | 3.681867e-66 | -8.615850e-47 |
| Msa0363350 | Msa0461700 | 0.893190 | 7.917806e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461700 | MtrunA17_Chr3g0102001 | 84.237 | 590 | 49 | 6 | 63 | 624 | 176 | 749 | 0.0 | 952 |
| Msa0461700 | MtrunA17_Chr5g0439061 | 44.781 | 594 | 271 | 15 | 63 | 624 | 176 | 744 | 4.69e-146 | 441 |
| Msa0461700 | MtrunA17_Chr3g0098481 | 52.848 | 316 | 138 | 4 | 312 | 621 | 32 | 342 | 4.31e-109 | 332 |
| Msa0461700 | MtrunA17_Chr3g0098541 | 66.265 | 249 | 45 | 5 | 63 | 290 | 129 | 359 | 2.95e-103 | 317 |
| Msa0461700 | MtrunA17_Chr2g0286601 | 35.879 | 563 | 311 | 11 | 72 | 620 | 163 | 689 | 3.56e-100 | 320 |
| Msa0461700 | MtrunA17_Chr3g0098531 | 50.340 | 294 | 136 | 4 | 333 | 621 | 6 | 294 | 1.83e-97 | 300 |
| Msa0461700 | MtrunA17_Chr2g0286551 | 35.866 | 566 | 286 | 13 | 72 | 620 | 163 | 668 | 1.19e-87 | 286 |
| Msa0461700 | MtrunA17_Chr3g0098301 | 48.065 | 310 | 150 | 4 | 312 | 615 | 98 | 402 | 1.96e-86 | 275 |
| Msa0461700 | MtrunA17_Chr5g0439051 | 66.176 | 204 | 68 | 1 | 421 | 624 | 20 | 222 | 2.29e-86 | 268 |
| Msa0461700 | MtrunA17_Chr5g0439081 | 55.779 | 199 | 86 | 1 | 421 | 619 | 16 | 212 | 7.73e-72 | 230 |
| Msa0461700 | MtrunA17_Chr2g0286561 | 48.095 | 210 | 109 | 0 | 411 | 620 | 5 | 214 | 1.54e-60 | 201 |
| Msa0461700 | MtrunA17_Chr5g0443001 | 35.786 | 299 | 184 | 3 | 312 | 609 | 309 | 600 | 1.99e-46 | 173 |
| Msa0461700 | MtrunA17_Chr2g0297701 | 34.106 | 302 | 189 | 3 | 311 | 609 | 274 | 568 | 8.88e-45 | 168 |
| Msa0461700 | MtrunA17_Chr5g0410201 | 32.680 | 306 | 185 | 4 | 315 | 611 | 33 | 326 | 1.15e-44 | 162 |
| Msa0461700 | MtrunA17_Chr5g0410171 | 33.225 | 307 | 182 | 5 | 315 | 611 | 439 | 732 | 9.18e-44 | 167 |
| Msa0461700 | MtrunA17_Chr5g0410271 | 32.680 | 306 | 185 | 4 | 315 | 611 | 32 | 325 | 9.70e-44 | 159 |
| Msa0461700 | MtrunA17_Chr5g0410341 | 33.876 | 307 | 180 | 5 | 315 | 611 | 451 | 744 | 2.96e-43 | 166 |
| Msa0461700 | MtrunA17_Chr6g0456141 | 32.441 | 299 | 192 | 4 | 315 | 611 | 92 | 382 | 1.74e-41 | 155 |
| Msa0461700 | MtrunA17_Chr2g0297481 | 32.808 | 317 | 198 | 6 | 296 | 609 | 166 | 470 | 3.16e-41 | 156 |
| Msa0461700 | MtrunA17_Chr2g0284501 | 36.656 | 311 | 179 | 5 | 314 | 616 | 367 | 667 | 8.70e-41 | 158 |
| Msa0461700 | MtrunA17_Chr2g0284541 | 37.299 | 311 | 175 | 6 | 314 | 616 | 351 | 649 | 1.34e-40 | 157 |
| Msa0461700 | MtrunA17_Chr6g0457101 | 32.595 | 316 | 198 | 5 | 302 | 611 | 380 | 686 | 7.10e-40 | 155 |
| Msa0461700 | MtrunA17_Chr2g0297681 | 32.500 | 320 | 194 | 7 | 300 | 610 | 383 | 689 | 7.63e-40 | 155 |
| Msa0461700 | MtrunA17_Chr2g0297491 | 32.907 | 313 | 199 | 4 | 300 | 609 | 72 | 376 | 1.10e-39 | 150 |
| Msa0461700 | MtrunA17_Chr2g0297691 | 32.602 | 319 | 193 | 7 | 300 | 609 | 385 | 690 | 5.24e-39 | 153 |
| Msa0461700 | MtrunA17_Chr3g0100741 | 34.028 | 288 | 181 | 4 | 312 | 598 | 304 | 583 | 1.08e-38 | 150 |
| Msa0461700 | MtrunA17_Chr6g0456101 | 32.226 | 301 | 190 | 5 | 315 | 609 | 449 | 741 | 2.12e-38 | 151 |
| Msa0461700 | MtrunA17_Chr5g0410461 | 33.754 | 317 | 192 | 6 | 300 | 609 | 156 | 461 | 4.05e-38 | 147 |
| Msa0461700 | MtrunA17_Chr2g0297651 | 33.542 | 319 | 189 | 9 | 300 | 609 | 385 | 689 | 1.23e-37 | 149 |
| Msa0461700 | MtrunA17_Chr5g0410371 | 34.106 | 302 | 182 | 7 | 316 | 609 | 1 | 293 | 2.17e-36 | 138 |
| Msa0461700 | MtrunA17_Chr3g0100301 | 37.374 | 198 | 122 | 2 | 405 | 601 | 204 | 400 | 1.34e-35 | 139 |
| Msa0461700 | MtrunA17_Chr3g0096941 | 30.392 | 306 | 203 | 4 | 312 | 614 | 305 | 603 | 9.85e-33 | 133 |
| Msa0461700 | MtrunA17_Chr5g0410191 | 35.795 | 176 | 112 | 1 | 436 | 611 | 17 | 191 | 1.50e-32 | 124 |
| Msa0461700 | MtrunA17_Chr2g0297711 | 30.303 | 297 | 192 | 6 | 319 | 609 | 238 | 525 | 2.31e-32 | 131 |
| Msa0461700 | MtrunA17_Chr5g0410581 | 30.847 | 295 | 193 | 5 | 312 | 600 | 495 | 784 | 1.63e-31 | 130 |
| Msa0461700 | MtrunA17_Chr5g0439071 | 30.296 | 406 | 182 | 14 | 72 | 421 | 182 | 542 | 1.20e-30 | 126 |
| Msa0461700 | MtrunA17_Chr5g0439041 | 48.031 | 127 | 63 | 2 | 298 | 421 | 42 | 168 | 2.80e-30 | 118 |
| Msa0461700 | MtrunA17_Chr3g0098511 | 50.980 | 102 | 48 | 1 | 525 | 624 | 1 | 102 | 2.24e-28 | 109 |
| Msa0461700 | MtrunA17_Chr5g0410541 | 37.324 | 142 | 88 | 1 | 436 | 577 | 38 | 178 | 1.09e-21 | 94.0 |
| Msa0461700 | MtrunA17_Chr5g0439031 | 33.333 | 210 | 115 | 5 | 73 | 272 | 7 | 201 | 3.53e-21 | 93.2 |
| Msa0461700 | MtrunA17_Chr5g0410451 | 28.856 | 201 | 139 | 1 | 415 | 611 | 35 | 235 | 2.82e-20 | 90.5 |
| Msa0461700 | MtrunA17_Chr5g0410181 | 33.333 | 132 | 87 | 1 | 480 | 611 | 2 | 132 | 7.55e-18 | 80.5 |
| Msa0461700 | MtrunA17_Chr5g0410511 | 33.108 | 148 | 99 | 0 | 421 | 568 | 2 | 149 | 4.72e-17 | 80.1 |
| Msa0461700 | MtrunA17_Chr1g0211531 | 24.342 | 304 | 216 | 7 | 311 | 607 | 235 | 531 | 7.08e-14 | 74.7 |
| Msa0461700 | MtrunA17_Chr2g0297611 | 37.079 | 89 | 54 | 2 | 426 | 514 | 1 | 87 | 2.94e-13 | 65.9 |
| Msa0461700 | MtrunA17_Chr3g0098291 | 55.556 | 54 | 23 | 1 | 71 | 123 | 182 | 235 | 5.77e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461700 | AT5G35810.1 | 34.202 | 307 | 186 | 4 | 312 | 609 | 31 | 330 | 1.84e-45 | 165 |
| Msa0461700 | AT3G18670.1 | 33.033 | 333 | 208 | 6 | 295 | 624 | 275 | 595 | 1.94e-44 | 167 |
| Msa0461700 | AT3G18670.2 | 33.033 | 333 | 208 | 6 | 295 | 624 | 330 | 650 | 3.47e-44 | 167 |
| Msa0461700 | AT5G04730.1 | 34.177 | 316 | 170 | 7 | 315 | 613 | 297 | 591 | 3.35e-41 | 158 |
| Msa0461700 | AT5G04700.1 | 33.226 | 310 | 187 | 5 | 313 | 613 | 360 | 658 | 5.22e-37 | 147 |
| Msa0461700 | AT3G54065.1 | 36.667 | 210 | 127 | 1 | 407 | 610 | 8 | 217 | 5.22e-37 | 138 |
| Msa0461700 | AT5G04690.1 | 36.441 | 236 | 135 | 4 | 386 | 613 | 386 | 614 | 8.56e-36 | 143 |
| Msa0461700 | AT5G04690.3 | 36.441 | 236 | 135 | 4 | 386 | 613 | 406 | 634 | 9.37e-36 | 143 |
| Msa0461700 | AT5G04690.2 | 36.441 | 236 | 135 | 4 | 386 | 613 | 420 | 648 | 1.05e-35 | 143 |
| Msa0461700 | AT5G04680.2 | 31.661 | 319 | 188 | 7 | 313 | 613 | 224 | 530 | 1.05e-29 | 124 |
| Msa0461700 | AT5G04680.4 | 31.661 | 319 | 188 | 7 | 313 | 613 | 347 | 653 | 1.49e-29 | 124 |
| Msa0461700 | AT5G04680.1 | 31.661 | 319 | 188 | 7 | 313 | 613 | 376 | 682 | 1.51e-29 | 124 |
| Msa0461700 | AT5G04680.3 | 31.661 | 319 | 188 | 7 | 313 | 613 | 333 | 639 | 1.70e-29 | 124 |
Find 132 sgRNAs with CRISPR-Local
Find 415 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACGTGAGAAAGCAATTT+TGG | 0.156280 | 3_3:+60104570 | Msa0461700:CDS |
| TTTGCTTTGTCTTCAGTAAT+TGG | 0.161186 | 3_3:+60105867 | Msa0461700:CDS |
| TCAACTCTTGAACATATTTA+TGG | 0.163849 | 3_3:+60103881 | Msa0461700:CDS |
| GATATACATTAGAAGGAAAT+TGG | 0.184221 | 3_3:+60099512 | Msa0461700:five_prime_UTR |
| CGATTGCTTCATCAACGTTT+AGG | 0.226838 | 3_3:-60102702 | None:intergenic |
| CATATCAATTCTGAAATCTT+TGG | 0.253328 | 3_3:-60105952 | None:intergenic |
| CCATTGTTGTTGAGGCATTA+AGG | 0.256438 | 3_3:+60104737 | Msa0461700:CDS |
| TTCCAAGTTAAGGTCGTATA+TGG | 0.261111 | 3_3:-60104674 | None:intergenic |
| CTTAAATATAAGAATGAAAA+AGG | 0.283570 | 3_3:+60099697 | Msa0461700:five_prime_UTR |
| GTGGCATATAAAATGGTTTC+AGG | 0.287876 | 3_3:+60104903 | Msa0461700:CDS |
| AGCGACGAACATTGCAATAA+TGG | 0.298105 | 3_3:-60106015 | None:intergenic |
| AATGATCAGATACCTTGATT+TGG | 0.300428 | 3_3:-60104014 | None:intergenic |
| TATGCCAAGGAAACTTCTTT+TGG | 0.300612 | 3_3:+60105971 | Msa0461700:CDS |
| TAACATGTGTCGTAGTTCTT+TGG | 0.306623 | 3_3:-60102769 | None:intergenic |
| ATTGACATGGATAACAATAA+TGG | 0.308005 | 3_3:+60099808 | Msa0461700:exon |
| AAAACTATGCCACATGTCTT+TGG | 0.311259 | 3_3:+60103538 | Msa0461700:CDS |
| GATTGCTTCATCAACGTTTA+GGG | 0.311454 | 3_3:-60102701 | None:intergenic |
| ACTCACATCTCCTGTTGGTT+TGG | 0.320602 | 3_3:-60103964 | None:intergenic |
| AAATGATGTGGCATATAAAA+TGG | 0.339034 | 3_3:+60104896 | Msa0461700:CDS |
| GTTCCAATCTCGATCACTTT+TGG | 0.346166 | 3_3:-60104854 | None:intergenic |
| ATGATCAGATACCTTGATTT+GGG | 0.347565 | 3_3:-60104013 | None:intergenic |
| ATGGTGGTCTGTGGTCTTCA+AGG | 0.353236 | 3_3:-60099032 | None:intergenic |
| TATCCCTTTAGCATGTCTTC+TGG | 0.357300 | 3_3:-60099493 | None:intergenic |
| CTAAAGGGATATACATTAGA+AGG | 0.366591 | 3_3:+60099505 | Msa0461700:five_prime_UTR |
| GTAGTAGCAGCACTCCTTGC+CGG | 0.383621 | 3_3:+60105753 | Msa0461700:CDS |
| ATTTCTATTGTGCTAAACTT+AGG | 0.384788 | 3_3:-60099565 | None:intergenic |
| TATATTTATATGTATGATGT+TGG | 0.391082 | 3_3:+60106360 | Msa0461700:three_prime_UTR |
| TCTCACTTCTTTATTGCTCA+TGG | 0.398104 | 3_3:-60099051 | None:intergenic |
| TCTCTTCCTCATCCACCCCT+TGG | 0.401557 | 3_3:-60104807 | None:intergenic |
| ATCACTTGTCTTTGGCACTT+TGG | 0.403980 | 3_3:-60106180 | None:intergenic |
| GAATCCTTATGAATCGTACT+TGG | 0.409285 | 3_3:+60103932 | Msa0461700:CDS |
| GTGCCAAAGACAAGTGATAA+GGG | 0.412267 | 3_3:+60106185 | Msa0461700:CDS |
| AAAGCGGATACAAGATGATA+TGG | 0.412635 | 3_3:+60101427 | Msa0461700:CDS |
| GATCGAGATTGGAACATATC+TGG | 0.414209 | 3_3:+60104862 | Msa0461700:CDS |
| TTTGGTCAATAAGAAAGAAA+TGG | 0.416646 | 3_3:-60106049 | None:intergenic |
| ATGGAGAATCGTATTGTTGA+AGG | 0.428871 | 3_3:+60103900 | Msa0461700:CDS |
| AATCCCAAAAGAAGTTTCCT+TGG | 0.428987 | 3_3:-60105975 | None:intergenic |
| GATATATGTGAATGTATCAT+AGG | 0.438316 | 3_3:+60099760 | Msa0461700:five_prime_UTR |
| ATATACATTAGAAGGAAATT+GGG | 0.442411 | 3_3:+60099513 | Msa0461700:five_prime_UTR |
| CTCTCAAACTTCTTGCTACT+AGG | 0.447146 | 3_3:+60101391 | Msa0461700:CDS |
| TTCCATATACGACCTTAACT+TGG | 0.451334 | 3_3:+60104672 | Msa0461700:CDS |
| CTACCAAAAGTGATCGAGAT+TGG | 0.451436 | 3_3:+60104851 | Msa0461700:CDS |
| TTTGATTTCAACCCAAATCA+AGG | 0.452198 | 3_3:+60104002 | Msa0461700:CDS |
| GCAGGCCTTCCTTCCAATGC+TGG | 0.454814 | 3_3:-60105834 | None:intergenic |
| GGCGGCAACAGAAGTGAAAC+AGG | 0.460466 | 3_3:+60105807 | Msa0461700:CDS |
| ATCGTCATTCAAAACAAACT+TGG | 0.462988 | 3_3:+60101360 | Msa0461700:CDS |
| GTTTCACTTCTGTTGCCGCC+TGG | 0.465087 | 3_3:-60105804 | None:intergenic |
| TGCTTAGCAAAAGATATAAG+TGG | 0.467290 | 3_3:-60102826 | None:intergenic |
| ATCTCCTGTTGGTTTGGCAC+CGG | 0.473422 | 3_3:-60103958 | None:intergenic |
| GTTCTAACTGTGAAATGCTC+TGG | 0.475307 | 3_3:-60105627 | None:intergenic |
| AAATGGCATAGTTGAAATAG+TGG | 0.476650 | 3_3:+60104624 | Msa0461700:CDS |
| TATGAATCGTACTTGGGAAC+CGG | 0.477276 | 3_3:+60103939 | Msa0461700:CDS |
| GTTCCCAAGTACGATTCATA+AGG | 0.479991 | 3_3:-60103936 | None:intergenic |
| GGAACCGGTGCCAAACCAAC+AGG | 0.484101 | 3_3:+60103954 | Msa0461700:CDS |
| AGTGCCAAAGACAAGTGATA+AGG | 0.491616 | 3_3:+60106184 | Msa0461700:CDS |
| TGAAACAGGTGAACCAGCAT+TGG | 0.494721 | 3_3:+60105821 | Msa0461700:CDS |
| TTGGCTTGTTCAAATAATAA+CGG | 0.499778 | 3_3:+60106246 | Msa0461700:three_prime_UTR |
| CATGAAGACCTGGTAACAAA+AGG | 0.500056 | 3_3:+60105693 | Msa0461700:CDS |
| CCACCACAATCACTTCTACC+TGG | 0.501326 | 3_3:-60099901 | None:intergenic |
| GTTCCACTCACATCTCCTGT+TGG | 0.501336 | 3_3:-60103969 | None:intergenic |
| GTATTCTTCACTGTGCCATC+CGG | 0.504088 | 3_3:+60099968 | Msa0461700:CDS |
| TGAAACACTGATGGAATTGA+AGG | 0.504191 | 3_3:-60099008 | None:intergenic |
| CACATGGATCAGTATACTAA+AGG | 0.504814 | 3_3:+60105597 | Msa0461700:intron |
| ACTACTTCTAATGCTGCAAA+TGG | 0.506668 | 3_3:+60102868 | Msa0461700:CDS |
| TCATAGGAGAAGGTGGTGAA+AGG | 0.507023 | 3_3:+60099776 | Msa0461700:five_prime_UTR |
| CTAAGAAGATCAATGTAAAG+TGG | 0.514162 | 3_3:-60106146 | None:intergenic |
| TCTCCAGAAGACATGCTAAA+GGG | 0.519808 | 3_3:+60099490 | Msa0461700:five_prime_UTR |
| CTTGATGCTGCAAGGTGCAA+AGG | 0.522226 | 3_3:-60099727 | None:intergenic |
| TGAATCCTCTTGATGCTGCA+AGG | 0.522236 | 3_3:-60099735 | None:intergenic |
| AACAAAGATGACAAAACAGC+TGG | 0.522635 | 3_3:+60105651 | Msa0461700:CDS |
| AAGTATACTGCTTCAAACAT+AGG | 0.527221 | 3_3:-60106274 | None:intergenic |
| TATATGCCACATCATTTGCA+AGG | 0.529923 | 3_3:-60104890 | None:intergenic |
| GTGAACCAGCATTGGAAGGA+AGG | 0.530748 | 3_3:+60105829 | Msa0461700:CDS |
| GGAAGAAGCTTGCGTTCAGA+TGG | 0.532689 | 3_3:-60103480 | None:intergenic |
| AAAGATCTTATTCGAAGCAA+TGG | 0.536817 | 3_3:+60099940 | Msa0461700:intron |
| TATAAACTGCGTACCTTCAG+TGG | 0.541428 | 3_3:-60099099 | None:intergenic |
| ATGAAGCAATCGAATATTGT+CGG | 0.541968 | 3_3:+60102713 | Msa0461700:CDS |
| CAGAAGAACCATTGTTGTTG+AGG | 0.542648 | 3_3:+60104729 | Msa0461700:CDS |
| TCAACGTTTAGGGTTCCTGC+AGG | 0.543035 | 3_3:-60102691 | None:intergenic |
| ATATTTCATGATCTAATCCA+AGG | 0.544119 | 3_3:+60104790 | Msa0461700:CDS |
| TCTAATCCAAGGGGTGGATG+AGG | 0.548428 | 3_3:+60104801 | Msa0461700:CDS |
| CAAGAAATCACATGAAGACC+TGG | 0.549895 | 3_3:+60105683 | Msa0461700:CDS |
| CACTTCTTTATTGCTCATGG+TGG | 0.550626 | 3_3:-60099048 | None:intergenic |
| TGGTAACAAAAGGTAGTGAA+TGG | 0.552482 | 3_3:+60105703 | Msa0461700:CDS |
| GTCTCCAGAAGACATGCTAA+AGG | 0.552591 | 3_3:+60099489 | Msa0461700:five_prime_UTR |
| ATGAGATGGGAGAAAGAAAG+TGG | 0.557230 | 3_3:-60098972 | None:intergenic |
| CTATCAAAAGGTATACCTGC+AGG | 0.557521 | 3_3:+60102676 | Msa0461700:intron |
| TTAAGGTCGTATATGGAACT+TGG | 0.559940 | 3_3:-60104667 | None:intergenic |
| ATTTCAGAATTGATATGCCA+AGG | 0.560690 | 3_3:+60105958 | Msa0461700:CDS |
| TTGCACCTTGCAGCATCAAG+AGG | 0.564363 | 3_3:+60099730 | Msa0461700:five_prime_UTR |
| CCTTAATGCCTCAACAACAA+TGG | 0.566172 | 3_3:-60104737 | None:intergenic |
| TGGAAGAAGCTTGCGTTCAG+AGG | 0.568522 | 3_3:-60103514 | None:intergenic |
| CTACACGTGGCAGTAAATGA+TGG | 0.568764 | 3_3:+60099610 | Msa0461700:five_prime_UTR |
| GCTACTGCATACAAAGTCAC+AGG | 0.569943 | 3_3:-60106116 | None:intergenic |
| AATCCTTATGAATCGTACTT+GGG | 0.574175 | 3_3:+60103933 | Msa0461700:CDS |
| AGCAAGTGACTGAATAAATG+AGG | 0.575232 | 3_3:-60106091 | None:intergenic |
| GCTACATCAAGCACTGTACC+AGG | 0.575420 | 3_3:+60105786 | Msa0461700:CDS |
| ATATGTATGATGTTGGATTG+TGG | 0.575658 | 3_3:+60106367 | Msa0461700:three_prime_UTR |
| TTATTGCTCATGGTGGTCTG+TGG | 0.578497 | 3_3:-60099041 | None:intergenic |
| AAGGAAGTATTTAATTGACA+TGG | 0.578660 | 3_3:+60099795 | Msa0461700:five_prime_UTR |
| AAAGCAAATGCATCAAATGC+AGG | 0.578955 | 3_3:-60105852 | None:intergenic |
| TGTGAATGTATCATAGGAGA+AGG | 0.583544 | 3_3:+60099766 | Msa0461700:five_prime_UTR |
| ATATGGAAGAGAAAGACAAA+AGG | 0.583591 | 3_3:+60103454 | Msa0461700:CDS |
| CTTCAAGGTTGAAACACTGA+TGG | 0.588634 | 3_3:-60099017 | None:intergenic |
| AAACCAGGTAGAAGTGATTG+TGG | 0.592057 | 3_3:+60099898 | Msa0461700:CDS |
| TTCGAGAAGTGAGTATGGAT+AGG | 0.593626 | 3_3:-60105923 | None:intergenic |
| TATTTCATGATCTAATCCAA+GGG | 0.595954 | 3_3:+60104791 | Msa0461700:CDS |
| ACAGGTGAACCAGCATTGGA+AGG | 0.599054 | 3_3:+60105825 | Msa0461700:CDS |
| TACAGTGCTTGATGTAGCGA+AGG | 0.603317 | 3_3:-60105781 | None:intergenic |
| CTAGTAGCAAGAAGTTTGAG+AGG | 0.605951 | 3_3:-60101390 | None:intergenic |
| GACACCACACACACCACTGA+AGG | 0.606720 | 3_3:+60099086 | Msa0461700:five_prime_UTR |
| ATAGAAATCAACAAAAGTAG+AGG | 0.623346 | 3_3:+60099580 | Msa0461700:five_prime_UTR |
| TGCCAAAGACAAGTGATAAG+GGG | 0.626830 | 3_3:+60106186 | Msa0461700:CDS |
| ATGATGAAGTGAAAATGTGT+TGG | 0.626914 | 3_3:+60106227 | Msa0461700:three_prime_UTR |
| TCATGATCTAATCCAAGGGG+TGG | 0.632793 | 3_3:+60104795 | Msa0461700:CDS |
| GCGGATACAAGATGATATGG+TGG | 0.635479 | 3_3:+60101430 | Msa0461700:CDS |
| GAAACACTGATGGAATTGAA+GGG | 0.635941 | 3_3:-60099007 | None:intergenic |
| TGATGTAGCGAAGGAAACAC+CGG | 0.642955 | 3_3:-60105772 | None:intergenic |
| GCCAAAGACAAGTGATAAGG+GGG | 0.646133 | 3_3:+60106187 | Msa0461700:CDS |
| AGGCCCTCAGCCTTCAAAAG+CGG | 0.649354 | 3_3:+60101411 | Msa0461700:CDS |
| TAGCGAAGGAAACACCGGCA+AGG | 0.651641 | 3_3:-60105767 | None:intergenic |
| GAATGTATCATAGGAGAAGG+TGG | 0.662333 | 3_3:+60099769 | Msa0461700:five_prime_UTR |
| CTACTGCATACAAAGTCACA+GGG | 0.663393 | 3_3:-60106115 | None:intergenic |
| TATCTCATCAAGTTTAAACC+AGG | 0.665314 | 3_3:+60099883 | Msa0461700:CDS |
| TGCAGGAGATAACAAAGATG+AGG | 0.668983 | 3_3:+60104525 | Msa0461700:intron |
| TAGAGGAACAGCACTACACG+TGG | 0.671680 | 3_3:+60099597 | Msa0461700:five_prime_UTR |
| AAACCAACAGGAGATGTGAG+TGG | 0.671744 | 3_3:+60103966 | Msa0461700:CDS |
| GTGCAGCCTTGCAAATGATG+TGG | 0.672833 | 3_3:+60104884 | Msa0461700:CDS |
| CGTACCTTCAGTGGTGTGTG+TGG | 0.673777 | 3_3:-60099090 | None:intergenic |
| CCAGGTAGAAGTGATTGTGG+TGG | 0.676500 | 3_3:+60099901 | Msa0461700:CDS |
| ATTTCATGATCTAATCCAAG+GGG | 0.703327 | 3_3:+60104792 | Msa0461700:CDS |
| ACATCAAGCACTGTACCAGG+CGG | 0.758516 | 3_3:+60105789 | Msa0461700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAATAAAAAAAT+TGG | - | chr3_3:60102530-60102549 | None:intergenic | 0.0% |
| !!! | TTTTTCATTCTTATATTTAA+GGG | - | chr3_3:60099698-60099717 | None:intergenic | 10.0% |
| !!! | TTTTAATCTATAATAAGTTA+TGG | - | chr3_3:60100453-60100472 | None:intergenic | 10.0% |
| !! | AATATACATAAATATTAGTA+CGG | - | chr3_3:60101290-60101309 | None:intergenic | 10.0% |
| !!! | TTTTTAAAACACTATATATT+TGG | + | chr3_3:60101726-60101745 | Msa0461700:intron | 10.0% |
| !! | TAAAAAATAAAAAAATTGGT+GGG | - | chr3_3:60102526-60102545 | None:intergenic | 10.0% |
| !! | ATAAAAAATAAAAAAATTGG+TGG | - | chr3_3:60102527-60102546 | None:intergenic | 10.0% |
| !!! | TATTAGTGATTAATTTTCAT+CGG | - | chr3_3:60099224-60099243 | None:intergenic | 15.0% |
| !! | ATAATATAAAAATATGCTGA+AGG | + | chr3_3:60099325-60099344 | Msa0461700:intron | 15.0% |
| !!! | CTTTTTCATTCTTATATTTA+AGG | - | chr3_3:60099699-60099718 | None:intergenic | 15.0% |
| !! | CTTAAATATAAGAATGAAAA+AGG | + | chr3_3:60099697-60099716 | Msa0461700:five_prime_UTR | 15.0% |
| !!! | CATATTATGAATTTTGTATT+TGG | + | chr3_3:60100043-60100062 | Msa0461700:CDS | 15.0% |
| !! | TTTATGAATGTGTAAAATAT+TGG | - | chr3_3:60100905-60100924 | None:intergenic | 15.0% |
| !!! | TAATAATTTAGAATCAGTTT+TGG | - | chr3_3:60101087-60101106 | None:intergenic | 15.0% |
| !!! | TTTAATGAATTTTGTCAATA+GGG | - | chr3_3:60101605-60101624 | None:intergenic | 15.0% |
| !!! | TTTTAATGAATTTTGTCAAT+AGG | - | chr3_3:60101606-60101625 | None:intergenic | 15.0% |
| !!! | TTATTGATAATTGTTTGTTA+TGG | + | chr3_3:60102001-60102020 | Msa0461700:intron | 15.0% |
| !!! | TATTGATAATTGTTTGTTAT+GGG | + | chr3_3:60102002-60102021 | Msa0461700:intron | 15.0% |
| !! | AAAAATGCATAATATATTCA+AGG | - | chr3_3:60102142-60102161 | None:intergenic | 15.0% |
| !! | GAAAAGAAATAAGAATTTAT+TGG | + | chr3_3:60102257-60102276 | Msa0461700:intron | 15.0% |
| !! | AAAAAATAAAAAAATTGGTG+GGG | - | chr3_3:60102525-60102544 | None:intergenic | 15.0% |
| !!! | ATATTTCTAATGAACAAAAA+AGG | - | chr3_3:60102609-60102628 | None:intergenic | 15.0% |
| !!! | ATATTTGATTTAGTCTATTT+TGG | - | chr3_3:60103219-60103238 | None:intergenic | 15.0% |
| !! | AAATATAAATTGAAACCATT+TGG | + | chr3_3:60103233-60103252 | Msa0461700:intron | 15.0% |
| !!! | TTTTTTTATTCTCAAAATGA+GGG | - | chr3_3:60103335-60103354 | None:intergenic | 15.0% |
| !! | TAAAAATGCAATGATATATT+TGG | - | chr3_3:60104208-60104227 | None:intergenic | 15.0% |
| !!! | TTATTATTTTAAATCAAGGA+CGG | + | chr3_3:60104234-60104253 | Msa0461700:intron | 15.0% |
| !!! | TTTTGAAATATGCATTATTT+TGG | - | chr3_3:60104999-60105018 | None:intergenic | 15.0% |
| !! | TATATTTATATGTATGATGT+TGG | + | chr3_3:60106360-60106379 | Msa0461700:three_prime_UTR | 15.0% |
| !! | TTACTACTTGGAAAAAAAAA+TGG | - | chr3_3:60099465-60099484 | None:intergenic | 20.0% |
| !! | ATATACATTAGAAGGAAATT+GGG | + | chr3_3:60099513-60099532 | Msa0461700:five_prime_UTR | 20.0% |
| !! | AGATTAAAAGTTGAATATGA+TGG | + | chr3_3:60100464-60100483 | Msa0461700:intron | 20.0% |
| !! | GATTAAAAGTTGAATATGAT+GGG | + | chr3_3:60100465-60100484 | Msa0461700:intron | 20.0% |
| !! | AAGTAAATAATTACACTTGA+TGG | - | chr3_3:60100765-60100784 | None:intergenic | 20.0% |
| !!! | AGAAAGGATAAAAAAAGTAT+AGG | + | chr3_3:60101032-60101051 | Msa0461700:intron | 20.0% |
| !! | ATTAATTTCTTTAACTAGTG+CGG | + | chr3_3:60101244-60101263 | Msa0461700:intron | 20.0% |
| !! | ATATTATATTGCAACAGATT+TGG | + | chr3_3:60101305-60101324 | Msa0461700:intron | 20.0% |
| !!! | AATTTTGATTAATGTGAAGT+TGG | + | chr3_3:60101910-60101929 | Msa0461700:intron | 20.0% |
| !!! | AACTAATAACTGTTTTTTAG+TGG | + | chr3_3:60102094-60102113 | Msa0461700:intron | 20.0% |
| !!! | ATTTATTGGTTGATTAAATG+AGG | + | chr3_3:60102271-60102290 | Msa0461700:intron | 20.0% |
| !!! | TTTATTGGTTGATTAAATGA+GGG | + | chr3_3:60102272-60102291 | Msa0461700:intron | 20.0% |
| !! | TATAATTTAACTACTTCCTT+CGG | - | chr3_3:60102374-60102393 | None:intergenic | 20.0% |
| !! | TTTATATTATGACAAAGACA+AGG | - | chr3_3:60102432-60102451 | None:intergenic | 20.0% |
| !!! | TATTTTCTTAGAAGATTTAG+AGG | + | chr3_3:60103016-60103035 | Msa0461700:intron | 20.0% |
| !!! | CTTTTTTTATTCTCAAAATG+AGG | - | chr3_3:60103336-60103355 | None:intergenic | 20.0% |
| !!! | TGTTTTCAAAATTTGCTTAA+AGG | + | chr3_3:60103813-60103832 | Msa0461700:intron | 20.0% |
| !!! | GTTTTCAAAATTTGCTTAAA+GGG | + | chr3_3:60103814-60103833 | Msa0461700:intron | 20.0% |
| !!! | TTTTCAAAATTTGCTTAAAG+GGG | + | chr3_3:60103815-60103834 | Msa0461700:intron | 20.0% |
| !! | GTCTTAAATATAAGTGAAAT+TGG | - | chr3_3:60104077-60104096 | None:intergenic | 20.0% |
| !! | ATGAAATGTCCTTAATTAAA+AGG | - | chr3_3:60104336-60104355 | None:intergenic | 20.0% |
| !!! | CATTTTTATTTTCCAAGTTA+AGG | - | chr3_3:60104687-60104706 | None:intergenic | 20.0% |
| !!! | TATTTCTTTTCTTTCAAATC+AGG | + | chr3_3:60104926-60104945 | Msa0461700:intron | 20.0% |
| !! | TATAAAGAAAAATATCCTCT+GGG | - | chr3_3:60105210-60105229 | None:intergenic | 20.0% |
| !! | TTATAAAGAAAAATATCCTC+TGG | - | chr3_3:60105211-60105230 | None:intergenic | 20.0% |
| !!! | CTTTATAATTTTAACACCTT+CGG | + | chr3_3:60105223-60105242 | Msa0461700:intron | 20.0% |
| !! | GTATTATGAGGATATTTATT+AGG | - | chr3_3:60105293-60105312 | None:intergenic | 20.0% |
| ! | GAGAAAAAACAATATGAGAT+GGG | - | chr3_3:60098988-60099007 | None:intergenic | 25.0% |
| !!! | TTACCAATGATTTTTTTTGC+CGG | + | chr3_3:60099126-60099145 | Msa0461700:intron | 25.0% |
| ! | CATAATATATGCAAAGTTCA+GGG | - | chr3_3:60099160-60099179 | None:intergenic | 25.0% |
| ! | TAAGCTTAACTCAGTTAATA+AGG | - | chr3_3:60099189-60099208 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | + | chr3_3:60099427-60099446 | Msa0461700:intron | 25.0% |
| ! | GATATACATTAGAAGGAAAT+TGG | + | chr3_3:60099512-60099531 | Msa0461700:five_prime_UTR | 25.0% |
| ! | ATTTCTATTGTGCTAAACTT+AGG | - | chr3_3:60099568-60099587 | None:intergenic | 25.0% |
| ! | ATAGAAATCAACAAAAGTAG+AGG | + | chr3_3:60099580-60099599 | Msa0461700:five_prime_UTR | 25.0% |
| ! | AATCTTAAGTCACAAAAATG+AGG | + | chr3_3:60099666-60099685 | Msa0461700:five_prime_UTR | 25.0% |
| ! | GATATATGTGAATGTATCAT+AGG | + | chr3_3:60099760-60099779 | Msa0461700:five_prime_UTR | 25.0% |
| !!! | AAGGAAGTATTTAATTGACA+TGG | + | chr3_3:60099795-60099814 | Msa0461700:five_prime_UTR | 25.0% |
| ! | ATTGACATGGATAACAATAA+TGG | + | chr3_3:60099808-60099827 | Msa0461700:exon | 25.0% |
| ! | AATTACCAAAAAATTCTCTC+CGG | - | chr3_3:60099990-60100009 | None:intergenic | 25.0% |
| ! | GAATTCATGAATTTCTATGT+CGG | + | chr3_3:60100279-60100298 | Msa0461700:intron | 25.0% |
| !!! | AGCTGTATTTTGAATATGAT+GGG | + | chr3_3:60100531-60100550 | Msa0461700:intron | 25.0% |
| !!! | ATAATGACTTAAGGTTTTGA+TGG | - | chr3_3:60100652-60100671 | None:intergenic | 25.0% |
| ! | GACTTATGTATAATGACTTA+AGG | - | chr3_3:60100661-60100680 | None:intergenic | 25.0% |
| !!! | TTATTGATTTATAAGCGATG+TGG | + | chr3_3:60100703-60100722 | Msa0461700:intron | 25.0% |
| !!! | TATTGATTTATAAGCGATGT+GGG | + | chr3_3:60100704-60100723 | Msa0461700:intron | 25.0% |
| ! | ATAATGCTCAAATAAGCTAA+TGG | + | chr3_3:60100984-60101003 | Msa0461700:intron | 25.0% |
| ! | AACTCCTTTACTCAAAATTA+AGG | - | chr3_3:60101867-60101886 | None:intergenic | 25.0% |
| !!! | TAATAACTGTTTTTTAGTGG+TGG | + | chr3_3:60102097-60102116 | Msa0461700:intron | 25.0% |
| ! | TTCCAAAACGATATTTCAAA+AGG | + | chr3_3:60102347-60102366 | Msa0461700:intron | 25.0% |
| ! | TTAATATTTCCGTTCTTCAT+AGG | - | chr3_3:60102407-60102426 | None:intergenic | 25.0% |
| !!! | GTCGTGATATTTTTTCTATT+TGG | + | chr3_3:60102947-60102966 | Msa0461700:intron | 25.0% |
| !!! | ATATTTTTTCTATTTGGCCA+GGG | + | chr3_3:60102953-60102972 | Msa0461700:intron | 25.0% |
| ! | AAGATTTAGAGGAATAGATA+AGG | + | chr3_3:60103027-60103046 | Msa0461700:intron | 25.0% |
| ! | GGCTATTACAATGATTAAAA+TGG | + | chr3_3:60103048-60103067 | Msa0461700:intron | 25.0% |
| ! | TGAGAATAAAAAAAGCAGTA+TGG | + | chr3_3:60103341-60103360 | Msa0461700:intron | 25.0% |
| !!! | AAATTAAGCTATGTTTTTGC+AGG | + | chr3_3:60103423-60103442 | Msa0461700:intron | 25.0% |
| !! | TTTTGCAGGATCTAAAAATA+TGG | + | chr3_3:60103437-60103456 | Msa0461700:intron | 25.0% |
| ! | ATCCCAAATGAAAAATGTTT+GGG | - | chr3_3:60103764-60103783 | None:intergenic | 25.0% |
| ! | CCATAAAACAATAACAATCA+AGG | - | chr3_3:60103792-60103811 | None:intergenic | 25.0% |
| !!! | CCTTGATTGTTATTGTTTTA+TGG | + | chr3_3:60103789-60103808 | Msa0461700:intron | 25.0% |
| ! | TCAACTCTTGAACATATTTA+TGG | + | chr3_3:60103881-60103900 | Msa0461700:CDS | 25.0% |
| !!! | GATTAACGACCTTTTAATTA+AGG | + | chr3_3:60104324-60104343 | Msa0461700:intron | 25.0% |
| ! | ATAACATAAATGAAACTTGC+AGG | + | chr3_3:60104508-60104527 | Msa0461700:intron | 25.0% |
| !! | TAAGTTTTGCAGAAATCTTT+GGG | - | chr3_3:60104552-60104571 | None:intergenic | 25.0% |
| !! | TTAAGTTTTGCAGAAATCTT+TGG | - | chr3_3:60104553-60104572 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAGTGCAATAAAG+AGG | + | chr3_3:60104765-60104784 | Msa0461700:CDS | 25.0% |
| ! | ATATTTCATGATCTAATCCA+AGG | + | chr3_3:60104790-60104809 | Msa0461700:CDS | 25.0% |
| ! | TATTTCATGATCTAATCCAA+GGG | + | chr3_3:60104791-60104810 | Msa0461700:CDS | 25.0% |
| ! | AAATGATGTGGCATATAAAA+TGG | + | chr3_3:60104896-60104915 | Msa0461700:CDS | 25.0% |
| ! | ATTTACAGTCACAATTTAAG+TGG | - | chr3_3:60105063-60105082 | None:intergenic | 25.0% |
| ! | TGTAAATGTGTTTGCAATTT+GGG | + | chr3_3:60105076-60105095 | Msa0461700:intron | 25.0% |
| !!! | CATATCAATTCTGAAATCTT+TGG | - | chr3_3:60105955-60105974 | None:intergenic | 25.0% |
| ! | TTTGGTCAATAAGAAAGAAA+TGG | - | chr3_3:60106052-60106071 | None:intergenic | 25.0% |
| !!! | TTGGCTTGTTCAAATAATAA+CGG | + | chr3_3:60106246-60106265 | Msa0461700:three_prime_UTR | 25.0% |
| GGAGAAAAAACAATATGAGA+TGG | - | chr3_3:60098989-60099008 | None:intergenic | 30.0% | |
| GCATAATATATGCAAAGTTC+AGG | - | chr3_3:60099161-60099180 | None:intergenic | 30.0% | |
| GATTAGAGTTATTCCTTGTT+TGG | - | chr3_3:60099443-60099462 | None:intergenic | 30.0% | |
| CTAAAGGGATATACATTAGA+AGG | + | chr3_3:60099505-60099524 | Msa0461700:five_prime_UTR | 30.0% | |
| TATCTCATCAAGTTTAAACC+AGG | + | chr3_3:60099883-60099902 | Msa0461700:CDS | 30.0% | |
| AAAGATCTTATTCGAAGCAA+TGG | + | chr3_3:60099940-60099959 | Msa0461700:intron | 30.0% | |
| TTTCTAATGTGTGCAATGTT+TGG | + | chr3_3:60100303-60100322 | Msa0461700:intron | 30.0% | |
| TTGCATTGAAATGAGTGTTA+AGG | + | chr3_3:60100404-60100423 | Msa0461700:intron | 30.0% | |
| ! | TAAAAGTTGAATATGATGGG+AGG | + | chr3_3:60100468-60100487 | Msa0461700:intron | 30.0% |
| !! | GAGCTGTATTTTGAATATGA+TGG | + | chr3_3:60100530-60100549 | Msa0461700:intron | 30.0% |
| !! | TGTATTTTGAATATGATGGG+AGG | + | chr3_3:60100534-60100553 | Msa0461700:intron | 30.0% |
| !! | ATGGTTTGTTTAACAACCTT+AGG | + | chr3_3:60101003-60101022 | Msa0461700:intron | 30.0% |
| TATCCTTTCTTAATTGCCTA+AGG | - | chr3_3:60101022-60101041 | None:intergenic | 30.0% | |
| ! | TTTTGAATGACGATAAGATC+AGG | - | chr3_3:60101354-60101373 | None:intergenic | 30.0% |
| ATCGTCATTCAAAACAAACT+TGG | + | chr3_3:60101360-60101379 | Msa0461700:CDS | 30.0% | |
| TTCTTAGTTACCATGAAGTT+TGG | + | chr3_3:60101564-60101583 | Msa0461700:intron | 30.0% | |
| ATATACCTAACCAAACTTCA+TGG | - | chr3_3:60101577-60101596 | None:intergenic | 30.0% | |
| CAAAATTAAGGCTTCAACTA+TGG | - | chr3_3:60101855-60101874 | None:intergenic | 30.0% | |
| !! | GAAGCCTTAATTTTGAGTAA+AGG | + | chr3_3:60101860-60101879 | Msa0461700:intron | 30.0% |
| TGCATAATATATTCAAGGTC+CGG | - | chr3_3:60102137-60102156 | None:intergenic | 30.0% | |
| ! | TGATTAAATGAGGGTATACT+AGG | + | chr3_3:60102281-60102300 | Msa0461700:intron | 30.0% |
| GGAATAGTAACGCTAAATTA+AGG | - | chr3_3:60102331-60102350 | None:intergenic | 30.0% | |
| !!! | GTCCTTTTGAAATATCGTTT+TGG | - | chr3_3:60102352-60102371 | None:intergenic | 30.0% |
| ! | CTTATCCCATTTTCCTTTTA+AGG | + | chr3_3:60102485-60102504 | Msa0461700:intron | 30.0% |
| ACAAGCCTTAAAAGGAAAAT+GGG | - | chr3_3:60102493-60102512 | None:intergenic | 30.0% | |
| AACAAGCCTTAAAAGGAAAA+TGG | - | chr3_3:60102494-60102513 | None:intergenic | 30.0% | |
| ! | GCATCTTATTTCATCTTTAG+AGG | - | chr3_3:60102563-60102582 | None:intergenic | 30.0% |
| TGTTATGACACACTATCAAA+AGG | + | chr3_3:60102664-60102683 | Msa0461700:intron | 30.0% | |
| ATGAAGCAATCGAATATTGT+CGG | + | chr3_3:60102713-60102732 | Msa0461700:CDS | 30.0% | |
| ! | TTCTTTGGACATAACTTTTG+TGG | - | chr3_3:60102757-60102776 | None:intergenic | 30.0% |
| TGCTTAGCAAAAGATATAAG+TGG | - | chr3_3:60102829-60102848 | None:intergenic | 30.0% | |
| !!! | GATATTTTTTCTATTTGGCC+AGG | + | chr3_3:60102952-60102971 | Msa0461700:intron | 30.0% |
| !! | TCTGAAGTAGATAAGGATTT+TGG | + | chr3_3:60102976-60102995 | Msa0461700:intron | 30.0% |
| ! | CTGAAGTAGATAAGGATTTT+GGG | + | chr3_3:60102977-60102996 | Msa0461700:intron | 30.0% |
| ! | TGAAGTAGATAAGGATTTTG+GGG | + | chr3_3:60102978-60102997 | Msa0461700:intron | 30.0% |
| ATGATTAAAATGGTCCAATG+CGG | + | chr3_3:60103058-60103077 | Msa0461700:intron | 30.0% | |
| !! | TTTGGATTTTTCGAAATCCA+AGG | - | chr3_3:60103201-60103220 | None:intergenic | 30.0% |
| CTCAGAGAAAATTTATGCTA+TGG | - | chr3_3:60103293-60103312 | None:intergenic | 30.0% | |
| !! | TAAATTTTCTCTGAGAGACA+TGG | + | chr3_3:60103298-60103317 | Msa0461700:intron | 30.0% |
| ATATGGAAGAGAAAGACAAA+AGG | + | chr3_3:60103454-60103473 | Msa0461700:CDS | 30.0% | |
| TTTGTATACATCTATACCCT+TGG | + | chr3_3:60103570-60103589 | Msa0461700:intron | 30.0% | |
| ATCTTACTTGAACACAACAT+CGG | + | chr3_3:60103647-60103666 | Msa0461700:intron | 30.0% | |
| GATCCCAAATGAAAAATGTT+TGG | - | chr3_3:60103765-60103784 | None:intergenic | 30.0% | |
| GGGTTGAAGAAATTAAAAAG+AGG | + | chr3_3:60103835-60103854 | Msa0461700:intron | 30.0% | |
| AATCCTTATGAATCGTACTT+GGG | + | chr3_3:60103933-60103952 | Msa0461700:CDS | 30.0% | |
| ! | TTTGATTTCAACCCAAATCA+AGG | + | chr3_3:60104002-60104021 | Msa0461700:CDS | 30.0% |
| ATGATCAGATACCTTGATTT+GGG | - | chr3_3:60104016-60104035 | None:intergenic | 30.0% | |
| AATGATCAGATACCTTGATT+TGG | - | chr3_3:60104017-60104036 | None:intergenic | 30.0% | |
| !! | AAGGTATCTGATCATTTTAG+TGG | + | chr3_3:60104021-60104040 | Msa0461700:intron | 30.0% |
| AATTGGTCAAAGAAAGTTGA+TGG | - | chr3_3:60104060-60104079 | None:intergenic | 30.0% | |
| ! | CATTTCGATTTGATCATAAG+TGG | + | chr3_3:60104107-60104126 | Msa0461700:intron | 30.0% |
| AACGGTTGTAAAACAATCAT+TGG | - | chr3_3:60104288-60104307 | None:intergenic | 30.0% | |
| !! | GATTGTTTTACAACCGTTTT+TGG | + | chr3_3:60104290-60104309 | Msa0461700:intron | 30.0% |
| TAGTAACACACAGATCAATT+TGG | - | chr3_3:60104417-60104436 | None:intergenic | 30.0% | |
| ! | AAATTGATCTGTGTGTTACT+AGG | + | chr3_3:60104416-60104435 | Msa0461700:intron | 30.0% |
| ! | TAAACGTGAGAAAGCAATTT+TGG | + | chr3_3:60104570-60104589 | Msa0461700:CDS | 30.0% |
| AAATGGCATAGTTGAAATAG+TGG | + | chr3_3:60104624-60104643 | Msa0461700:CDS | 30.0% | |
| ATTTCATGATCTAATCCAAG+GGG | + | chr3_3:60104792-60104811 | Msa0461700:CDS | 30.0% | |
| ! | CATCGAATTTTAAACTACGA+CGG | - | chr3_3:60104954-60104973 | None:intergenic | 30.0% |
| CTGTAAATGTGTTTGCAATT+TGG | + | chr3_3:60105075-60105094 | Msa0461700:intron | 30.0% | |
| !! | TATTGATTGGTTTGGATACT+GGG | - | chr3_3:60105118-60105137 | None:intergenic | 30.0% |
| ! | TCAAAGACTATTGATTGGTT+TGG | - | chr3_3:60105126-60105145 | None:intergenic | 30.0% |
| ! | CGTCTCTTGTATCTTTTAAT+GGG | - | chr3_3:60105184-60105203 | None:intergenic | 30.0% |
| ! | TCGTCTCTTGTATCTTTTAA+TGG | - | chr3_3:60105185-60105204 | None:intergenic | 30.0% |
| TTTGCTTTGTCTTCAGTAAT+TGG | + | chr3_3:60105867-60105886 | Msa0461700:CDS | 30.0% | |
| ATTTCAGAATTGATATGCCA+AGG | + | chr3_3:60105958-60105977 | Msa0461700:CDS | 30.0% | |
| ! | ACACAATGTGCTTGTATTTT+TGG | - | chr3_3:60106070-60106089 | None:intergenic | 30.0% |
| CTAAGAAGATCAATGTAAAG+TGG | - | chr3_3:60106149-60106168 | None:intergenic | 30.0% | |
| ATGATGAAGTGAAAATGTGT+TGG | + | chr3_3:60106227-60106246 | Msa0461700:three_prime_UTR | 30.0% | |
| AAGTATACTGCTTCAAACAT+AGG | - | chr3_3:60106277-60106296 | None:intergenic | 30.0% | |
| ATATGTATGATGTTGGATTG+TGG | + | chr3_3:60106367-60106386 | Msa0461700:three_prime_UTR | 30.0% | |
| GAAACACTGATGGAATTGAA+GGG | - | chr3_3:60099010-60099029 | None:intergenic | 35.0% | |
| TGAAACACTGATGGAATTGA+AGG | - | chr3_3:60099011-60099030 | None:intergenic | 35.0% | |
| TCTCACTTCTTTATTGCTCA+TGG | - | chr3_3:60099054-60099073 | None:intergenic | 35.0% | |
| ACTCCGGCAAAAAAAATCAT+TGG | - | chr3_3:60099132-60099151 | None:intergenic | 35.0% | |
| AAAGTTCAGGGTTTAAACTC+CGG | - | chr3_3:60099148-60099167 | None:intergenic | 35.0% | |
| TTAACTGAGTTAAGCTTACG+AGG | + | chr3_3:60099191-60099210 | Msa0461700:intron | 35.0% | |
| CTTAAGTCACAAAAATGAGG+AGG | + | chr3_3:60099669-60099688 | Msa0461700:five_prime_UTR | 35.0% | |
| TGTGAATGTATCATAGGAGA+AGG | + | chr3_3:60099766-60099785 | Msa0461700:five_prime_UTR | 35.0% | |
| GACAATGCAGCAAAAAACAA+GGG | - | chr3_3:60099841-60099860 | None:intergenic | 35.0% | |
| AGACAATGCAGCAAAAAACA+AGG | - | chr3_3:60099842-60099861 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGCTGCATTGTCT+TGG | + | chr3_3:60099842-60099861 | Msa0461700:CDS | 35.0% |
| CAACAACAAACCAATGGTTT+AGG | + | chr3_3:60100599-60100618 | Msa0461700:intron | 35.0% | |
| CACTTGATGGAGATATTGTT+GGG | - | chr3_3:60100752-60100771 | None:intergenic | 35.0% | |
| ACACTTGATGGAGATATTGT+TGG | - | chr3_3:60100753-60100772 | None:intergenic | 35.0% | |
| AGAAGTGACTCATATACTTG+AGG | - | chr3_3:60100873-60100892 | None:intergenic | 35.0% | |
| GAAGTAGAGAATGTTCTGTT+GGG | - | chr3_3:60100959-60100978 | None:intergenic | 35.0% | |
| AGAAGTAGAGAATGTTCTGT+TGG | - | chr3_3:60100960-60100979 | None:intergenic | 35.0% | |
| CAACCTTAGGCAATTAAGAA+AGG | + | chr3_3:60101016-60101035 | Msa0461700:intron | 35.0% | |
| TTTCTTTAACTAGTGCGGTA+AGG | + | chr3_3:60101249-60101268 | Msa0461700:intron | 35.0% | |
| AAAGCGGATACAAGATGATA+TGG | + | chr3_3:60101427-60101446 | Msa0461700:CDS | 35.0% | |
| AGTTACCATGAAGTTTGGTT+AGG | + | chr3_3:60101569-60101588 | Msa0461700:intron | 35.0% | |
| AATCTATGTCACATAGTGTG+AGG | + | chr3_3:60101813-60101832 | Msa0461700:intron | 35.0% | |
| !!! | AACTGTTTTTTAGTGGTGGT+CGG | + | chr3_3:60102101-60102120 | Msa0461700:intron | 35.0% |
| ! | GAGGGTATACTAGGATTAAA+AGG | + | chr3_3:60102290-60102309 | Msa0461700:intron | 35.0% |
| GTAACGCTAAATTAAGGAAG+TGG | - | chr3_3:60102325-60102344 | None:intergenic | 35.0% | |
| AACCAGTATCCTATGAAGAA+CGG | + | chr3_3:60102395-60102414 | Msa0461700:intron | 35.0% | |
| GGGATAAGATTTGTATACTC+AGG | - | chr3_3:60102473-60102492 | None:intergenic | 35.0% | |
| TCAAGTCAACAAGCCTTAAA+AGG | - | chr3_3:60102501-60102520 | None:intergenic | 35.0% | |
| GATTGCTTCATCAACGTTTA+GGG | - | chr3_3:60102704-60102723 | None:intergenic | 35.0% | |
| !!! | AACTTTTGTGGTTTTGACTC+AGG | - | chr3_3:60102745-60102764 | None:intergenic | 35.0% |
| TAACATGTGTCGTAGTTCTT+TGG | - | chr3_3:60102772-60102791 | None:intergenic | 35.0% | |
| ACTACTTCTAATGCTGCAAA+TGG | + | chr3_3:60102868-60102887 | Msa0461700:CDS | 35.0% | |
| !! | GATTTTTCGAAATCCAAGGT+AGG | - | chr3_3:60103197-60103216 | None:intergenic | 35.0% |
| AAAACTATGCCACATGTCTT+TGG | + | chr3_3:60103538-60103557 | Msa0461700:CDS | 35.0% | |
| CTTCAAAAACCAAAGACATG+TGG | - | chr3_3:60103550-60103569 | None:intergenic | 35.0% | |
| TTCAGATAACGAGATCAACT+AGG | - | chr3_3:60103623-60103642 | None:intergenic | 35.0% | |
| ! | TCGCCCAAACATTTTTCATT+TGG | + | chr3_3:60103758-60103777 | Msa0461700:intron | 35.0% |
| ! | CGCCCAAACATTTTTCATTT+GGG | + | chr3_3:60103759-60103778 | Msa0461700:intron | 35.0% |
| AGAGGAAGCAAAAACACAAA+TGG | + | chr3_3:60103853-60103872 | Msa0461700:intron | 35.0% | |
| AAGCAAAAACACAAATGGAG+TGG | + | chr3_3:60103858-60103877 | Msa0461700:CDS | 35.0% | |
| ATGGAGAATCGTATTGTTGA+AGG | + | chr3_3:60103900-60103919 | Msa0461700:CDS | 35.0% | |
| GAATCCTTATGAATCGTACT+TGG | + | chr3_3:60103932-60103951 | Msa0461700:CDS | 35.0% | |
| TCACTTGAGTTCTCCAAAAA+CGG | - | chr3_3:60104306-60104325 | None:intergenic | 35.0% | |
| ! | TCTTATCCTTCTGATTTTCG+GGG | - | chr3_3:60104451-60104470 | None:intergenic | 35.0% |
| ! | GTCTTATCCTTCTGATTTTC+GGG | - | chr3_3:60104452-60104471 | None:intergenic | 35.0% |
| ! | CGTCTTATCCTTCTGATTTT+CGG | - | chr3_3:60104453-60104472 | None:intergenic | 35.0% |
| !!! | ATTTTGACTGCAGCAAGAAA+TGG | + | chr3_3:60104607-60104626 | Msa0461700:CDS | 35.0% |
| TTAAGGTCGTATATGGAACT+TGG | - | chr3_3:60104670-60104689 | None:intergenic | 35.0% | |
| TTCCATATACGACCTTAACT+TGG | + | chr3_3:60104672-60104691 | Msa0461700:CDS | 35.0% | |
| TTCCAAGTTAAGGTCGTATA+TGG | - | chr3_3:60104677-60104696 | None:intergenic | 35.0% | |
| TATATGCCACATCATTTGCA+AGG | - | chr3_3:60104893-60104912 | None:intergenic | 35.0% | |
| GTGGCATATAAAATGGTTTC+AGG | + | chr3_3:60104903-60104922 | Msa0461700:CDS | 35.0% | |
| AAAATTCGATGACCTTGATC+AGG | + | chr3_3:60104963-60104982 | Msa0461700:intron | 35.0% | |
| !! | CTATTGATTGGTTTGGATAC+TGG | - | chr3_3:60105119-60105138 | None:intergenic | 35.0% |
| ACTGCTCAAAGACTATTGAT+TGG | - | chr3_3:60105131-60105150 | None:intergenic | 35.0% | |
| AGACATTGTTGAAGCCTAAA+AGG | - | chr3_3:60105155-60105174 | None:intergenic | 35.0% | |
| TTCAGCCAAAAGAGATATTG+AGG | + | chr3_3:60105266-60105285 | Msa0461700:intron | 35.0% | |
| TCAGCCAAAAGAGATATTGA+GGG | + | chr3_3:60105267-60105286 | Msa0461700:intron | 35.0% | |
| GTGTGCAAAAGTAGTTAGAA+GGG | - | chr3_3:60105580-60105599 | None:intergenic | 35.0% | |
| TGTGTGCAAAAGTAGTTAGA+AGG | - | chr3_3:60105581-60105600 | None:intergenic | 35.0% | |
| !! | TCTAACTACTTTTGCACACA+TGG | + | chr3_3:60105581-60105600 | Msa0461700:intron | 35.0% |
| CACATGGATCAGTATACTAA+AGG | + | chr3_3:60105597-60105616 | Msa0461700:intron | 35.0% | |
| AACAAAGATGACAAAACAGC+TGG | + | chr3_3:60105651-60105670 | Msa0461700:CDS | 35.0% | |
| ! | ATTCACTACCTTTTGTTACC+AGG | - | chr3_3:60105704-60105723 | None:intergenic | 35.0% |
| TGGTAACAAAAGGTAGTGAA+TGG | + | chr3_3:60105703-60105722 | Msa0461700:CDS | 35.0% | |
| AAAGCAAATGCATCAAATGC+AGG | - | chr3_3:60105855-60105874 | None:intergenic | 35.0% | |
| !! | TTCTTTTCGAGAAGTGAGTA+TGG | - | chr3_3:60105931-60105950 | None:intergenic | 35.0% |
| ! | TATGCCAAGGAAACTTCTTT+TGG | + | chr3_3:60105971-60105990 | Msa0461700:CDS | 35.0% |
| ! | ATGCCAAGGAAACTTCTTTT+GGG | + | chr3_3:60105972-60105991 | Msa0461700:CDS | 35.0% |
| AATCCCAAAAGAAGTTTCCT+TGG | - | chr3_3:60105978-60105997 | None:intergenic | 35.0% | |
| AGCAAGTGACTGAATAAATG+AGG | - | chr3_3:60106094-60106113 | None:intergenic | 35.0% | |
| ATAAGGGGGAGGAAATATAA+AGG | + | chr3_3:60106201-60106220 | Msa0461700:CDS | 35.0% | |
| CTTCAAGGTTGAAACACTGA+TGG | - | chr3_3:60099020-60099039 | None:intergenic | 40.0% | |
| CACTTCTTTATTGCTCATGG+TGG | - | chr3_3:60099051-60099070 | None:intergenic | 40.0% | |
| TATAAACTGCGTACCTTCAG+TGG | - | chr3_3:60099102-60099121 | None:intergenic | 40.0% | |
| CTGGAGACACATTTACTACT+TGG | - | chr3_3:60099477-60099496 | None:intergenic | 40.0% | |
| TCTCCAGAAGACATGCTAAA+GGG | + | chr3_3:60099490-60099509 | Msa0461700:five_prime_UTR | 40.0% | |
| TATCCCTTTAGCATGTCTTC+TGG | - | chr3_3:60099496-60099515 | None:intergenic | 40.0% | |
| AAGTCACAAAAATGAGGAGG+AGG | + | chr3_3:60099672-60099691 | Msa0461700:five_prime_UTR | 40.0% | |
| GAATGTATCATAGGAGAAGG+TGG | + | chr3_3:60099769-60099788 | Msa0461700:five_prime_UTR | 40.0% | |
| AAACCAGGTAGAAGTGATTG+TGG | + | chr3_3:60099898-60099917 | Msa0461700:CDS | 40.0% | |
| ACCAAAAAATTCTCTCCGGA+TGG | - | chr3_3:60099986-60100005 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr3_3:60100174-60100193 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr3_3:60100177-60100196 | None:intergenic | 40.0% | |
| GATATAGCATTGCTCTTGCT+TGG | + | chr3_3:60100251-60100270 | Msa0461700:intron | 40.0% | |
| ! | GAATATGATGGGAGGTGTAT+TGG | + | chr3_3:60100476-60100495 | Msa0461700:intron | 40.0% |
| ! | GAATATGATGGGAGGTGTAT+TGG | + | chr3_3:60100476-60100495 | Msa0461700:intron | 40.0% |
| CAAGAGCAACAACAAACCAA+TGG | + | chr3_3:60100593-60100612 | Msa0461700:intron | 40.0% | |
| CTCTTTCAGTCCTAAACCAT+TGG | - | chr3_3:60100612-60100631 | None:intergenic | 40.0% | |
| ! | TGTTGGGTTTCAAGTGTGAA+TGG | - | chr3_3:60100736-60100755 | None:intergenic | 40.0% |
| CAACAACAGGTCAATGTTTC+AGG | + | chr3_3:60100802-60100821 | Msa0461700:intron | 40.0% | |
| !! | ACTTGAGGCCTTGTGATTTT+GGG | - | chr3_3:60100858-60100877 | None:intergenic | 40.0% |
| !! | TACTTGAGGCCTTGTGATTT+TGG | - | chr3_3:60100859-60100878 | None:intergenic | 40.0% |
| TCATGCTAATCAGTGTCTCT+TGG | + | chr3_3:60101114-60101133 | Msa0461700:intron | 40.0% | |
| CATGCTAATCAGTGTCTCTT+GGG | + | chr3_3:60101115-60101134 | Msa0461700:intron | 40.0% | |
| CTAGTAGCAAGAAGTTTGAG+AGG | - | chr3_3:60101393-60101412 | None:intergenic | 40.0% | |
| CTCTCAAACTTCTTGCTACT+AGG | + | chr3_3:60101391-60101410 | Msa0461700:CDS | 40.0% | |
| !! | CATCTTGTATCCGCTTTTGA+AGG | - | chr3_3:60101424-60101443 | None:intergenic | 40.0% |
| GAAATGTTGCACACTTACAG+TGG | - | chr3_3:60101470-60101489 | None:intergenic | 40.0% | |
| TATGGGAGAGAGATAAAGTG+TGG | + | chr3_3:60102019-60102038 | Msa0461700:intron | 40.0% | |
| !!! | ACTGTTTTTTAGTGGTGGTC+GGG | + | chr3_3:60102102-60102121 | Msa0461700:intron | 40.0% |
| CGATATTTCAAAAGGACCGA+AGG | + | chr3_3:60102355-60102374 | Msa0461700:intron | 40.0% | |
| TTCCGTTCTTCATAGGATAC+TGG | - | chr3_3:60102400-60102419 | None:intergenic | 40.0% | |
| ! | CTATCAAAAGGTATACCTGC+AGG | + | chr3_3:60102676-60102695 | Msa0461700:intron | 40.0% |
| CGATTGCTTCATCAACGTTT+AGG | - | chr3_3:60102705-60102724 | None:intergenic | 40.0% | |
| ATTGAACATCTGACCTACCT+TGG | + | chr3_3:60103181-60103200 | Msa0461700:intron | 40.0% | |
| TGCTTTCTTGTGAGGGAAAT+TGG | - | chr3_3:60103270-60103289 | None:intergenic | 40.0% | |
| TGAGAGACATGGATAGAACA+AGG | + | chr3_3:60103309-60103328 | Msa0461700:intron | 40.0% | |
| ! | AGACATGTGGCATAGTTTTC+TGG | - | chr3_3:60103537-60103556 | None:intergenic | 40.0% |
| GTTCCCAAGTACGATTCATA+AGG | - | chr3_3:60103939-60103958 | None:intergenic | 40.0% | |
| TATGAATCGTACTTGGGAAC+CGG | + | chr3_3:60103939-60103958 | Msa0461700:CDS | 40.0% | |
| ! | CTTATCCTTCTGATTTTCGG+GGG | - | chr3_3:60104450-60104469 | None:intergenic | 40.0% |
| TGCAGGAGATAACAAAGATG+AGG | + | chr3_3:60104525-60104544 | Msa0461700:intron | 40.0% | |
| ! | CAGAAGAACCATTGTTGTTG+AGG | + | chr3_3:60104729-60104748 | Msa0461700:CDS | 40.0% |
| CCTTAATGCCTCAACAACAA+TGG | - | chr3_3:60104740-60104759 | None:intergenic | 40.0% | |
| ! | CCATTGTTGTTGAGGCATTA+AGG | + | chr3_3:60104737-60104756 | Msa0461700:CDS | 40.0% |
| CTACCAAAAGTGATCGAGAT+TGG | + | chr3_3:60104851-60104870 | Msa0461700:CDS | 40.0% | |
| ! | GTTCCAATCTCGATCACTTT+TGG | - | chr3_3:60104857-60104876 | None:intergenic | 40.0% |
| GATCGAGATTGGAACATATC+TGG | + | chr3_3:60104862-60104881 | Msa0461700:CDS | 40.0% | |
| !! | ATTGGTTTGGATACTGGGTT+TGG | - | chr3_3:60105113-60105132 | None:intergenic | 40.0% |
| ! | GTCTTTGAGCAGTTCCTTTT+AGG | + | chr3_3:60105138-60105157 | Msa0461700:intron | 40.0% |
| ! | TAGGCCCTCAATATCTCTTT+TGG | - | chr3_3:60105274-60105293 | None:intergenic | 40.0% |
| TGGAGTTAAGAACTGCAGTT+GGG | - | chr3_3:60105344-60105363 | None:intergenic | 40.0% | |
| TGCAGTTCTTAACTCCACTT+GGG | + | chr3_3:60105347-60105366 | Msa0461700:intron | 40.0% | |
| !!! | GGGGGTATTAGCGTATTTTT+CGG | + | chr3_3:60105367-60105386 | Msa0461700:intron | 40.0% |
| !! | GGGGTATTAGCGTATTTTTC+GGG | + | chr3_3:60105368-60105387 | Msa0461700:intron | 40.0% |
| AAAACCAACCCAATCATGAC+TGG | + | chr3_3:60105452-60105471 | Msa0461700:intron | 40.0% | |
| AAACCAACCCAATCATGACT+GGG | + | chr3_3:60105453-60105472 | Msa0461700:intron | 40.0% | |
| AATCCAACCCAGTCATGATT+GGG | - | chr3_3:60105463-60105482 | None:intergenic | 40.0% | |
| ! | AATCATGACTGGGTTGGATT+GGG | + | chr3_3:60105463-60105482 | Msa0461700:intron | 40.0% |
| GTTCTAACTGTGAAATGCTC+TGG | - | chr3_3:60105630-60105649 | None:intergenic | 40.0% | |
| CAAGAAATCACATGAAGACC+TGG | + | chr3_3:60105683-60105702 | Msa0461700:CDS | 40.0% | |
| CATGAAGACCTGGTAACAAA+AGG | + | chr3_3:60105693-60105712 | Msa0461700:CDS | 40.0% | |
| TTCGAGAAGTGAGTATGGAT+AGG | - | chr3_3:60105926-60105945 | None:intergenic | 40.0% | |
| AGCGACGAACATTGCAATAA+TGG | - | chr3_3:60106018-60106037 | None:intergenic | 40.0% | |
| CTACTGCATACAAAGTCACA+GGG | - | chr3_3:60106118-60106137 | None:intergenic | 40.0% | |
| ATCACTTGTCTTTGGCACTT+TGG | - | chr3_3:60106183-60106202 | None:intergenic | 40.0% | |
| AGTGCCAAAGACAAGTGATA+AGG | + | chr3_3:60106184-60106203 | Msa0461700:CDS | 40.0% | |
| GTGCCAAAGACAAGTGATAA+GGG | + | chr3_3:60106185-60106204 | Msa0461700:CDS | 40.0% | |
| TGCCAAAGACAAGTGATAAG+GGG | + | chr3_3:60106186-60106205 | Msa0461700:CDS | 40.0% | |
| TTATTGCTCATGGTGGTCTG+TGG | - | chr3_3:60099044-60099063 | None:intergenic | 45.0% | |
| GTCTCCAGAAGACATGCTAA+AGG | + | chr3_3:60099489-60099508 | Msa0461700:five_prime_UTR | 45.0% | |
| CTACACGTGGCAGTAAATGA+TGG | + | chr3_3:60099610-60099629 | Msa0461700:five_prime_UTR | 45.0% | |
| TGAATCCTCTTGATGCTGCA+AGG | - | chr3_3:60099738-60099757 | None:intergenic | 45.0% | |
| TCATAGGAGAAGGTGGTGAA+AGG | + | chr3_3:60099776-60099795 | Msa0461700:five_prime_UTR | 45.0% | |
| GTATTCTTCACTGTGCCATC+CGG | + | chr3_3:60099968-60099987 | Msa0461700:CDS | 45.0% | |
| !!! | GCCATCCGGAGAGAATTTTT+TGG | + | chr3_3:60099982-60100001 | Msa0461700:CDS | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+TGG | - | chr3_3:60100157-60100176 | None:intergenic | 45.0% |
| CATCTCCACCCAAAATCACA+AGG | + | chr3_3:60100847-60100866 | Msa0461700:intron | 45.0% | |
| !! | TATCCGCTTTTGAAGGCTGA+GGG | - | chr3_3:60101417-60101436 | None:intergenic | 45.0% |
| GCGGATACAAGATGATATGG+TGG | + | chr3_3:60101430-60101449 | Msa0461700:CDS | 45.0% | |
| !!! | CTGTTTTTTAGTGGTGGTCG+GGG | + | chr3_3:60102103-60102122 | Msa0461700:intron | 45.0% |
| TCCTTATCTACTTCAGACCC+TGG | - | chr3_3:60102973-60102992 | None:intergenic | 45.0% | |
| CTTCAATCACAACTGCATCG+TGG | - | chr3_3:60103084-60103103 | None:intergenic | 45.0% | |
| TGAAGATCACACCGCAAATG+TGG | + | chr3_3:60103099-60103118 | Msa0461700:intron | 45.0% | |
| AATTGCATCAGCCTCTGCAA+CGG | - | chr3_3:60103132-60103151 | None:intergenic | 45.0% | |
| TTGGAGTCTGATCGTCCAAA+TGG | - | chr3_3:60103251-60103270 | None:intergenic | 45.0% | |
| GCTATGGTGCTTTCTTGTGA+GGG | - | chr3_3:60103277-60103296 | None:intergenic | 45.0% | |
| TGCTATGGTGCTTTCTTGTG+AGG | - | chr3_3:60103278-60103297 | None:intergenic | 45.0% | |
| !! | CGTTCAGAGGCATAGTTTTC+TGG | - | chr3_3:60103504-60103523 | None:intergenic | 45.0% |
| ! | ATCTATACCCTTGGCCTTTC+AGG | + | chr3_3:60103579-60103598 | Msa0461700:intron | 45.0% |
| GACACTTACCAACTCCTGAA+AGG | - | chr3_3:60103596-60103615 | None:intergenic | 45.0% | |
| TCATGATCTAATCCAAGGGG+TGG | + | chr3_3:60104795-60104814 | Msa0461700:CDS | 45.0% | |
| GGACTGTTTGATCCTGATCA+AGG | - | chr3_3:60104978-60104997 | None:intergenic | 45.0% | |
| TTCGGTAGATAACTCCCAGA+GGG | + | chr3_3:60105241-60105260 | Msa0461700:intron | 45.0% | |
| !! | CTTTTGGCTGAATACCCTCT+GGG | - | chr3_3:60105258-60105277 | None:intergenic | 45.0% |
| !! | TCTTTTGGCTGAATACCCTC+TGG | - | chr3_3:60105259-60105278 | None:intergenic | 45.0% |
| !! | CTGCAGCTGAGAGTATTATG+AGG | - | chr3_3:60105305-60105324 | None:intergenic | 45.0% |
| GTTAAGAACTGCAGTTGGGA+GGG | - | chr3_3:60105340-60105359 | None:intergenic | 45.0% | |
| AGTTAAGAACTGCAGTTGGG+AGG | - | chr3_3:60105341-60105360 | None:intergenic | 45.0% | |
| GTGGAGTTAAGAACTGCAGT+TGG | - | chr3_3:60105345-60105364 | None:intergenic | 45.0% | |
| CTGCAGTTCTTAACTCCACT+TGG | + | chr3_3:60105346-60105365 | Msa0461700:intron | 45.0% | |
| GCAGTTCTTAACTCCACTTG+GGG | + | chr3_3:60105348-60105367 | Msa0461700:intron | 45.0% | |
| CAGTTCTTAACTCCACTTGG+GGG | + | chr3_3:60105349-60105368 | Msa0461700:intron | 45.0% | |
| AATACGCTAATACCCCCAAG+TGG | - | chr3_3:60105364-60105383 | None:intergenic | 45.0% | |
| CAATCCAACCCAGTCATGAT+TGG | - | chr3_3:60105464-60105483 | None:intergenic | 45.0% | |
| ! | CAATCATGACTGGGTTGGAT+TGG | + | chr3_3:60105462-60105481 | Msa0461700:intron | 45.0% |
| TGATGTAGCGAAGGAAACAC+CGG | - | chr3_3:60105775-60105794 | None:intergenic | 45.0% | |
| TACAGTGCTTGATGTAGCGA+AGG | - | chr3_3:60105784-60105803 | None:intergenic | 45.0% | |
| TGAAACAGGTGAACCAGCAT+TGG | + | chr3_3:60105821-60105840 | Msa0461700:CDS | 45.0% | |
| !!! | ATGTTCGTCGCTTTTTGCTC+TGG | + | chr3_3:60106026-60106045 | Msa0461700:CDS | 45.0% |
| GCTACTGCATACAAAGTCAC+AGG | - | chr3_3:60106119-60106138 | None:intergenic | 45.0% | |
| GCCAAAGACAAGTGATAAGG+GGG | + | chr3_3:60106187-60106206 | Msa0461700:CDS | 45.0% | |
| TCCCCCTTATCACTTGTCTT+TGG | - | chr3_3:60106191-60106210 | None:intergenic | 45.0% | |
| AAAGACAAGTGATAAGGGGG+AGG | + | chr3_3:60106190-60106209 | Msa0461700:CDS | 45.0% | |
| !!! | TAAATATTCATTTTTATTTT+AGG | - | chr3_3:60100356-60100375 | None:intergenic | 5.0% |
| !!! | ATATTTAATTATTTACTTTT+TGG | + | chr3_3:60100369-60100388 | Msa0461700:intron | 5.0% |
| !!! | ATCATTAATTTTTTTTTTTA+AGG | + | chr3_3:60104148-60104167 | Msa0461700:intron | 5.0% |
| !!! | TCATTAATTTTTTTTTTTAA+GGG | + | chr3_3:60104149-60104168 | Msa0461700:intron | 5.0% |
| !!! | TTTATTATTATTTTAAATCA+AGG | + | chr3_3:60104230-60104249 | Msa0461700:intron | 5.0% |
| ATGGTGGTCTGTGGTCTTCA+AGG | - | chr3_3:60099035-60099054 | None:intergenic | 50.0% | |
| TAGAGGAACAGCACTACACG+TGG | + | chr3_3:60099597-60099616 | Msa0461700:five_prime_UTR | 50.0% | |
| CTTGATGCTGCAAGGTGCAA+AGG | - | chr3_3:60099730-60099749 | None:intergenic | 50.0% | |
| TTGCACCTTGCAGCATCAAG+AGG | + | chr3_3:60099730-60099749 | Msa0461700:five_prime_UTR | 50.0% | |
| CCACCACAATCACTTCTACC+TGG | - | chr3_3:60099904-60099923 | None:intergenic | 50.0% | |
| CCAGGTAGAAGTGATTGTGG+TGG | + | chr3_3:60099901-60099920 | Msa0461700:CDS | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr3_3:60100164-60100183 | Msa0461700:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr3_3:60100169-60100188 | None:intergenic | 50.0% | |
| GTTGTTGCTCTCGTGACATC+TGG | - | chr3_3:60100789-60100808 | None:intergenic | 50.0% | |
| GATGTCACGAGAGCAACAAC+AGG | + | chr3_3:60100789-60100808 | Msa0461700:intron | 50.0% | |
| !! | TGAGGCCTTGTGATTTTGGG+TGG | - | chr3_3:60100855-60100874 | None:intergenic | 50.0% |
| !! | GTATCCGCTTTTGAAGGCTG+AGG | - | chr3_3:60101418-60101437 | None:intergenic | 50.0% |
| ! | TCAACGTTTAGGGTTCCTGC+AGG | - | chr3_3:60102694-60102713 | None:intergenic | 50.0% |
| ! | GCCAGGGTCTGAAGTAGATA+AGG | + | chr3_3:60102969-60102988 | Msa0461700:intron | 50.0% |
| ACGGCATCGTACCACATTTG+CGG | - | chr3_3:60103113-60103132 | None:intergenic | 50.0% | |
| GGAAGAAGCTTGCGTTCAGA+TGG | - | chr3_3:60103483-60103502 | None:intergenic | 50.0% | |
| TGGAAGAAGCTTGCGTTCAG+AGG | - | chr3_3:60103484-60103503 | None:intergenic | 50.0% | |
| ACCAACTCCTGAAAGGCCAA+GGG | - | chr3_3:60103589-60103608 | None:intergenic | 50.0% | |
| TACCAACTCCTGAAAGGCCA+AGG | - | chr3_3:60103590-60103609 | None:intergenic | 50.0% | |
| TCCTTCCCCCGAAAATCAGA+AGG | + | chr3_3:60104442-60104461 | Msa0461700:intron | 50.0% | |
| !! | TCCTTCTGATTTTCGGGGGA+AGG | - | chr3_3:60104446-60104465 | None:intergenic | 50.0% |
| TCTAATCCAAGGGGTGGATG+AGG | + | chr3_3:60104801-60104820 | Msa0461700:CDS | 50.0% | |
| GTGCAGCCTTGCAAATGATG+TGG | + | chr3_3:60104884-60104903 | Msa0461700:CDS | 50.0% | |
| ATACAAGAGACGACTCCCAG+AGG | + | chr3_3:60105192-60105211 | Msa0461700:intron | 50.0% | |
| ! | CTCTGGGAGTTATCTACCGA+AGG | - | chr3_3:60105242-60105261 | None:intergenic | 50.0% |
| CTTCGGTAGATAACTCCCAG+AGG | + | chr3_3:60105240-60105259 | Msa0461700:intron | 50.0% | |
| CAACCCAGTCATGATTGGGT+TGG | - | chr3_3:60105459-60105478 | None:intergenic | 50.0% | |
| CAACCCAATCATGACTGGGT+TGG | + | chr3_3:60105457-60105476 | Msa0461700:intron | 50.0% | |
| ! | GCTACATCAAGCACTGTACC+AGG | + | chr3_3:60105786-60105805 | Msa0461700:CDS | 50.0% |
| ! | ACATCAAGCACTGTACCAGG+CGG | + | chr3_3:60105789-60105808 | Msa0461700:CDS | 50.0% |
| ! | ACAGGTGAACCAGCATTGGA+AGG | + | chr3_3:60105825-60105844 | Msa0461700:CDS | 50.0% |
| ! | GTGAACCAGCATTGGAAGGA+AGG | + | chr3_3:60105829-60105848 | Msa0461700:CDS | 50.0% |
| GACACCACACACACCACTGA+AGG | + | chr3_3:60099086-60099105 | Msa0461700:five_prime_UTR | 55.0% | |
| CGTACCTTCAGTGGTGTGTG+TGG | - | chr3_3:60099093-60099112 | None:intergenic | 55.0% | |
| AGGCCCTCAGCCTTCAAAAG+CGG | + | chr3_3:60101411-60101430 | Msa0461700:CDS | 55.0% | |
| ! | ACCCTTGGCCTTTCAGGAGT+TGG | + | chr3_3:60103585-60103604 | Msa0461700:intron | 55.0% |
| TCTCTTCCTCATCCACCCCT+TGG | - | chr3_3:60104810-60104829 | None:intergenic | 55.0% | |
| GAACTGCAGTTGGGAGGGAA+CGG | - | chr3_3:60105335-60105354 | None:intergenic | 55.0% | |
| GTAGTAGCAGCACTCCTTGC+CGG | + | chr3_3:60105753-60105772 | Msa0461700:CDS | 55.0% | |
| TAGCGAAGGAAACACCGGCA+AGG | - | chr3_3:60105770-60105789 | None:intergenic | 55.0% | |
| GTTTCACTTCTGTTGCCGCC+TGG | - | chr3_3:60105807-60105826 | None:intergenic | 55.0% | |
| GGCGGCAACAGAAGTGAAAC+AGG | + | chr3_3:60105807-60105826 | Msa0461700:CDS | 55.0% | |
| GCGAGCTTAGCTCAGCTGGT+AGG | - | chr3_3:60102165-60102184 | None:intergenic | 60.0% | |
| CATCGCGAGCTTAGCTCAGC+TGG | - | chr3_3:60102169-60102188 | None:intergenic | 60.0% | |
| CAACTGCATCGTGGCCGCAT+TGG | - | chr3_3:60103075-60103094 | None:intergenic | 60.0% | |
| GTGGTACGATGCCGTTGCAG+AGG | + | chr3_3:60103118-60103137 | Msa0461700:intron | 60.0% | |
| GCAGGCCTTCCTTCCAATGC+TGG | - | chr3_3:60105837-60105856 | None:intergenic | 60.0% | |
| GGTGCGTGCTTACGTGCGTG+TGG | + | chr3_3:60100497-60100516 | Msa0461700:intron | 65.0% | |
| GGTGCGTGCTTACGTGCGTG+TGG | + | chr3_3:60100497-60100516 | Msa0461700:intron | 65.0% | |
| GGTGGTCGGGGTTCGAACTC+CGG | + | chr3_3:60102115-60102134 | Msa0461700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 60098975 | 60106467 | 60098975 | ID=Msa0461700;Name=Msa0461700 |
| chr3_3 | mRNA | 60098975 | 60106467 | 60098975 | ID=Msa0461700-mRNA-1;Parent=Msa0461700;Name=Msa0461700-mRNA-1;_AED=0.05;_eAED=0.06;_QI=478|0.88|0.8|1|0.55|0.4|10|206|624 |
| chr3_3 | exon | 60098975 | 60099107 | 60098975 | ID=Msa0461700-mRNA-1:exon:12535;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60099482 | 60099922 | 60099482 | ID=Msa0461700-mRNA-1:exon:12536;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60099944 | 60100064 | 60099944 | ID=Msa0461700-mRNA-1:exon:12537;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60101322 | 60101471 | 60101322 | ID=Msa0461700-mRNA-1:exon:12538;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60102686 | 60102889 | 60102686 | ID=Msa0461700-mRNA-1:exon:12539;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60103445 | 60103572 | 60103445 | ID=Msa0461700-mRNA-1:exon:12540;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60103855 | 60104023 | 60103855 | ID=Msa0461700-mRNA-1:exon:12541;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60104530 | 60104924 | 60104530 | ID=Msa0461700-mRNA-1:exon:12542;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60105609 | 60106302 | 60105609 | ID=Msa0461700-mRNA-1:exon:12543;Parent=Msa0461700-mRNA-1 |
| chr3_3 | exon | 60106344 | 60106467 | 60106344 | ID=Msa0461700-mRNA-1:exon:12544;Parent=Msa0461700-mRNA-1 |
| chr3_3 | five_prime_UTR | 60098975 | 60099107 | 60098975 | ID=Msa0461700-mRNA-1:five_prime_utr;Parent=Msa0461700-mRNA-1 |
| chr3_3 | five_prime_UTR | 60099482 | 60099826 | 60099482 | ID=Msa0461700-mRNA-1:five_prime_utr;Parent=Msa0461700-mRNA-1 |
| chr3_3 | CDS | 60099827 | 60099922 | 60099827 | ID=Msa0461700-mRNA-1:cds;Parent=Msa0461700-mRNA-1 |
| chr3_3 | CDS | 60099944 | 60100064 | 60099944 | ID=Msa0461700-mRNA-1:cds;Parent=Msa0461700-mRNA-1 |
| chr3_3 | CDS | 60101322 | 60101471 | 60101322 | ID=Msa0461700-mRNA-1:cds;Parent=Msa0461700-mRNA-1 |
| chr3_3 | CDS | 60102686 | 60102889 | 60102686 | ID=Msa0461700-mRNA-1:cds;Parent=Msa0461700-mRNA-1 |
| chr3_3 | CDS | 60103445 | 60103572 | 60103445 | ID=Msa0461700-mRNA-1:cds;Parent=Msa0461700-mRNA-1 |
| chr3_3 | CDS | 60103855 | 60104023 | 60103855 | ID=Msa0461700-mRNA-1:cds;Parent=Msa0461700-mRNA-1 |
| chr3_3 | CDS | 60104530 | 60104924 | 60104530 | ID=Msa0461700-mRNA-1:cds;Parent=Msa0461700-mRNA-1 |
| chr3_3 | CDS | 60105609 | 60106220 | 60105609 | ID=Msa0461700-mRNA-1:cds;Parent=Msa0461700-mRNA-1 |
| chr3_3 | three_prime_UTR | 60106221 | 60106302 | 60106221 | ID=Msa0461700-mRNA-1:three_prime_utr;Parent=Msa0461700-mRNA-1 |
| chr3_3 | three_prime_UTR | 60106344 | 60106467 | 60106344 | ID=Msa0461700-mRNA-1:three_prime_utr;Parent=Msa0461700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
