Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363350 | XP_039687154.1 | 87.780 | 491 | 36 | 4 | 11 | 493 | 275 | 749 | 0.0 | 835 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363350 | A0A396IRT2 | 87.780 | 491 | 36 | 4 | 11 | 493 | 275 | 749 | 0.0 | 835 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0363350 | 0.845208 | 4.686183e-59 | -8.615850e-47 |
| Msa0034270 | Msa0363350 | 0.826451 | 2.692789e-54 | -8.615850e-47 |
| Msa0072370 | Msa0363350 | 0.811761 | 5.955879e-51 | -8.615850e-47 |
| Msa0073530 | Msa0363350 | 0.813771 | 2.162046e-51 | -8.615850e-47 |
| Msa0089380 | Msa0363350 | 0.816113 | 6.536470e-52 | -8.615850e-47 |
| Msa0103000 | Msa0363350 | 0.800383 | 1.478928e-48 | -8.615850e-47 |
| Msa0110970 | Msa0363350 | 0.826781 | 2.246592e-54 | -8.615850e-47 |
| Msa0124340 | Msa0363350 | 0.820788 | 5.701009e-53 | -8.615850e-47 |
| Msa0157290 | Msa0363350 | 0.844981 | 5.397696e-59 | -8.615850e-47 |
| Msa0173660 | Msa0363350 | 0.831068 | 2.057650e-55 | -8.615850e-47 |
| Msa0190690 | Msa0363350 | 0.805594 | 1.237840e-49 | -8.615850e-47 |
| Msa0205850 | Msa0363350 | 0.806868 | 6.673793e-50 | -8.615850e-47 |
| Msa0306300 | Msa0363350 | 0.813211 | 2.870890e-51 | -8.615850e-47 |
| Msa0311420 | Msa0363350 | 0.815224 | 1.031664e-51 | -8.615850e-47 |
| Msa0335040 | Msa0363350 | 0.801251 | 9.833664e-49 | -8.615850e-47 |
| Msa0337540 | Msa0363350 | 0.831454 | 1.653865e-55 | -8.615850e-47 |
| Msa0341910 | Msa0363350 | 0.805297 | 1.429153e-49 | -8.615850e-47 |
| Msa0363350 | Msa0417880 | 0.823236 | 1.543765e-53 | -8.615850e-47 |
| Msa0363350 | Msa0436050 | 0.800062 | 1.718739e-48 | -8.615850e-47 |
| Msa0363350 | Msa0461700 | 0.893190 | 7.917806e-75 | -8.615850e-47 |
| Msa0363350 | Msa0461720 | 0.808716 | 2.700762e-50 | -8.615850e-47 |
| Msa0363350 | Msa0461730 | 0.867272 | 1.546289e-65 | -8.615850e-47 |
| Msa0363350 | Msa0484780 | 0.812385 | 4.354724e-51 | -8.615850e-47 |
| Msa0363350 | Msa0503560 | 0.813200 | 2.887011e-51 | -8.615850e-47 |
| Msa0363350 | Msa0503580 | 0.832084 | 1.156505e-55 | -8.615850e-47 |
| Msa0363350 | Msa0507680 | 0.800007 | 1.763889e-48 | -8.615850e-47 |
| Msa0363350 | Msa0516320 | 0.802737 | 4.866637e-49 | -8.615850e-47 |
| Msa0363350 | Msa0534590 | 0.812183 | 4.820456e-51 | -8.615850e-47 |
| Msa0363350 | Msa0548620 | 0.818950 | 1.500278e-52 | -8.615850e-47 |
| Msa0363350 | Msa0548660 | 0.816978 | 4.184269e-52 | -8.615850e-47 |
| Msa0363350 | Msa0590800 | 0.809246 | 2.079919e-50 | -8.615850e-47 |
| Msa0363350 | Msa0601750 | 0.806901 | 6.566765e-50 | -8.615850e-47 |
| Msa0363350 | Msa0609430 | 0.806414 | 8.323402e-50 | -8.615850e-47 |
| Msa0363350 | Msa0616220 | 0.809373 | 1.954285e-50 | -8.615850e-47 |
| Msa0363350 | Msa0620240 | 0.811758 | 5.964410e-51 | -8.615850e-47 |
| Msa0363350 | Msa0650020 | 0.804170 | 2.456450e-49 | -8.615850e-47 |
| Msa0363350 | Msa0657970 | 0.815784 | 7.741897e-52 | -8.615850e-47 |
| Msa0363350 | Msa0684500 | 0.827363 | 1.630270e-54 | -8.615850e-47 |
| Msa0363350 | Msa0704600 | 0.814927 | 1.200509e-51 | -8.615850e-47 |
| Msa0363350 | Msa0749760 | 0.804091 | 2.551627e-49 | -8.615850e-47 |
| Msa0363350 | Msa0824660 | 0.801301 | 9.604920e-49 | -8.615850e-47 |
| Msa0363350 | Msa0828560 | 0.803380 | 3.583085e-49 | -8.615850e-47 |
| Msa0363350 | Msa0880140 | 0.845761 | 3.319420e-59 | -8.615850e-47 |
| Msa0363350 | Msa0906200 | 0.800023 | 1.750758e-48 | -8.615850e-47 |
| Msa0363350 | Msa1010110 | 0.806332 | 8.661525e-50 | -8.615850e-47 |
| Msa0363350 | Msa1019020 | 0.812471 | 4.168836e-51 | -8.615850e-47 |
| Msa0363350 | Msa1082500 | 0.807081 | 6.017210e-50 | -8.615850e-47 |
| Msa0363350 | Msa1104000 | 0.821310 | 4.321778e-53 | -8.615850e-47 |
| Msa0363350 | Msa1108160 | 0.810985 | 8.779562e-51 | -8.615850e-47 |
| Msa0363350 | Msa1133000 | 0.814324 | 1.632805e-51 | -8.615850e-47 |
| Msa0363350 | Msa1139810 | 0.809721 | 1.644719e-50 | -8.615850e-47 |
| Msa0363350 | Msa1147570 | 0.804467 | 2.129987e-49 | -8.615850e-47 |
| Msa0363350 | Msa1152510 | 0.802692 | 4.973244e-49 | -8.615850e-47 |
| Msa0363350 | Msa1278840 | 0.804757 | 1.852806e-49 | -8.615850e-47 |
| Msa0363350 | Msa1452120 | 0.826409 | 2.756801e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363350 | MtrunA17_Chr3g0102001 | 87.780 | 491 | 36 | 4 | 11 | 493 | 275 | 749 | 0.0 | 835 |
| Msa0363350 | MtrunA17_Chr5g0439061 | 51.126 | 444 | 184 | 8 | 70 | 493 | 314 | 744 | 1.79e-137 | 414 |
| Msa0363350 | MtrunA17_Chr3g0098481 | 52.848 | 316 | 138 | 4 | 181 | 490 | 32 | 342 | 2.36e-111 | 333 |
| Msa0363350 | MtrunA17_Chr3g0098531 | 49.832 | 297 | 139 | 4 | 202 | 493 | 6 | 297 | 1.74e-99 | 301 |
| Msa0363350 | MtrunA17_Chr2g0286601 | 37.908 | 459 | 243 | 9 | 35 | 489 | 269 | 689 | 1.95e-91 | 293 |
| Msa0363350 | MtrunA17_Chr3g0098301 | 48.065 | 310 | 150 | 4 | 181 | 484 | 98 | 402 | 1.73e-88 | 276 |
| Msa0363350 | MtrunA17_Chr5g0439051 | 66.176 | 204 | 68 | 1 | 290 | 493 | 20 | 222 | 2.73e-88 | 270 |
| Msa0363350 | MtrunA17_Chr2g0286551 | 38.377 | 456 | 232 | 10 | 41 | 489 | 255 | 668 | 1.14e-81 | 266 |
| Msa0363350 | MtrunA17_Chr5g0439081 | 55.779 | 199 | 86 | 1 | 290 | 488 | 16 | 212 | 1.37e-73 | 231 |
| Msa0363350 | MtrunA17_Chr2g0286561 | 48.095 | 210 | 109 | 0 | 280 | 489 | 5 | 214 | 4.61e-62 | 202 |
| Msa0363350 | MtrunA17_Chr3g0098541 | 71.127 | 142 | 33 | 2 | 19 | 159 | 225 | 359 | 9.26e-60 | 200 |
| Msa0363350 | MtrunA17_Chr5g0443001 | 35.786 | 299 | 184 | 3 | 181 | 478 | 309 | 600 | 8.50e-48 | 174 |
| Msa0363350 | MtrunA17_Chr2g0297701 | 34.106 | 302 | 189 | 3 | 180 | 478 | 274 | 568 | 5.96e-46 | 169 |
| Msa0363350 | MtrunA17_Chr5g0410201 | 32.680 | 306 | 185 | 4 | 184 | 480 | 33 | 326 | 1.29e-45 | 162 |
| Msa0363350 | MtrunA17_Chr5g0410171 | 33.225 | 307 | 182 | 5 | 184 | 480 | 439 | 732 | 2.90e-45 | 169 |
| Msa0363350 | MtrunA17_Chr5g0410271 | 32.680 | 306 | 185 | 4 | 184 | 480 | 32 | 325 | 1.03e-44 | 159 |
| Msa0363350 | MtrunA17_Chr5g0410341 | 33.876 | 307 | 180 | 5 | 184 | 480 | 451 | 744 | 1.54e-44 | 167 |
| Msa0363350 | MtrunA17_Chr2g0284501 | 36.656 | 311 | 179 | 5 | 183 | 485 | 367 | 667 | 4.64e-42 | 159 |
| Msa0363350 | MtrunA17_Chr6g0456141 | 32.107 | 299 | 193 | 4 | 184 | 480 | 92 | 382 | 7.92e-42 | 153 |
| Msa0363350 | MtrunA17_Chr2g0284541 | 37.500 | 312 | 173 | 7 | 183 | 485 | 351 | 649 | 8.41e-42 | 158 |
| Msa0363350 | MtrunA17_Chr2g0297481 | 32.808 | 317 | 198 | 6 | 165 | 478 | 166 | 470 | 8.66e-42 | 155 |
| Msa0363350 | MtrunA17_Chr6g0457101 | 32.781 | 302 | 191 | 4 | 182 | 480 | 394 | 686 | 4.39e-41 | 156 |
| Msa0363350 | MtrunA17_Chr2g0297681 | 32.500 | 320 | 194 | 7 | 169 | 479 | 383 | 689 | 6.25e-41 | 156 |
| Msa0363350 | MtrunA17_Chr2g0297491 | 32.907 | 313 | 199 | 4 | 169 | 478 | 72 | 376 | 1.59e-40 | 150 |
| Msa0363350 | MtrunA17_Chr2g0297691 | 32.602 | 319 | 193 | 7 | 169 | 478 | 385 | 690 | 2.33e-40 | 154 |
| Msa0363350 | MtrunA17_Chr3g0100741 | 34.028 | 288 | 181 | 4 | 181 | 467 | 304 | 583 | 8.70e-40 | 151 |
| Msa0363350 | MtrunA17_Chr6g0456101 | 32.226 | 301 | 190 | 5 | 184 | 478 | 449 | 741 | 1.72e-39 | 152 |
| Msa0363350 | MtrunA17_Chr2g0297651 | 33.542 | 319 | 189 | 9 | 169 | 478 | 385 | 689 | 1.02e-38 | 149 |
| Msa0363350 | MtrunA17_Chr5g0410461 | 33.754 | 317 | 192 | 6 | 169 | 478 | 156 | 461 | 2.13e-38 | 145 |
| Msa0363350 | MtrunA17_Chr5g0410371 | 34.106 | 302 | 182 | 7 | 185 | 478 | 1 | 293 | 5.08e-37 | 138 |
| Msa0363350 | MtrunA17_Chr3g0100301 | 37.374 | 198 | 122 | 2 | 274 | 470 | 204 | 400 | 1.68e-36 | 139 |
| Msa0363350 | MtrunA17_Chr3g0096941 | 30.872 | 298 | 195 | 5 | 181 | 477 | 305 | 592 | 1.24e-33 | 134 |
| Msa0363350 | MtrunA17_Chr5g0410191 | 36.932 | 176 | 110 | 1 | 305 | 480 | 17 | 191 | 4.00e-33 | 124 |
| Msa0363350 | MtrunA17_Chr2g0297711 | 30.303 | 297 | 192 | 6 | 188 | 478 | 238 | 525 | 4.26e-33 | 132 |
| Msa0363350 | MtrunA17_Chr5g0410581 | 30.847 | 295 | 193 | 5 | 181 | 469 | 495 | 784 | 1.55e-32 | 132 |
| Msa0363350 | MtrunA17_Chr5g0439041 | 48.031 | 127 | 63 | 2 | 167 | 290 | 42 | 168 | 1.19e-30 | 118 |
| Msa0363350 | MtrunA17_Chr3g0098511 | 52.525 | 99 | 45 | 1 | 394 | 490 | 1 | 99 | 2.43e-30 | 114 |
| Msa0363350 | MtrunA17_Chr5g0439071 | 31.228 | 285 | 128 | 9 | 44 | 290 | 288 | 542 | 8.26e-23 | 101 |
| Msa0363350 | MtrunA17_Chr5g0410541 | 37.324 | 142 | 88 | 1 | 305 | 446 | 38 | 178 | 4.04e-22 | 94.7 |
| Msa0363350 | MtrunA17_Chr5g0410451 | 29.557 | 203 | 135 | 3 | 284 | 480 | 35 | 235 | 2.91e-20 | 90.1 |
| Msa0363350 | MtrunA17_Chr5g0410181 | 33.333 | 132 | 87 | 1 | 349 | 480 | 2 | 132 | 1.67e-18 | 82.0 |
| Msa0363350 | MtrunA17_Chr5g0410511 | 33.108 | 148 | 99 | 0 | 290 | 437 | 2 | 149 | 4.60e-17 | 79.7 |
| Msa0363350 | MtrunA17_Chr1g0211531 | 24.342 | 304 | 216 | 7 | 180 | 476 | 235 | 531 | 2.83e-14 | 75.1 |
| Msa0363350 | MtrunA17_Chr2g0297611 | 36.264 | 91 | 56 | 2 | 295 | 385 | 1 | 89 | 1.41e-13 | 66.6 |
| Msa0363350 | MtrunA17_Chr5g0439031 | 43.056 | 72 | 32 | 1 | 70 | 141 | 139 | 201 | 5.92e-12 | 65.9 |
| Msa0363350 | MtrunA17_Chr3g0100921 | 28.030 | 132 | 95 | 0 | 339 | 470 | 2 | 133 | 3.03e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363350 | AT5G35810.1 | 34.202 | 307 | 186 | 4 | 181 | 478 | 31 | 330 | 1.77e-46 | 165 |
| Msa0363350 | AT3G18670.1 | 33.033 | 333 | 208 | 6 | 164 | 493 | 275 | 595 | 9.51e-46 | 169 |
| Msa0363350 | AT3G18670.2 | 33.033 | 333 | 208 | 6 | 164 | 493 | 330 | 650 | 1.23e-45 | 169 |
| Msa0363350 | AT5G04730.1 | 34.177 | 316 | 170 | 7 | 184 | 482 | 297 | 591 | 4.28e-42 | 159 |
| Msa0363350 | AT5G04700.1 | 33.226 | 310 | 187 | 5 | 182 | 482 | 360 | 658 | 4.90e-38 | 147 |
| Msa0363350 | AT3G54065.1 | 36.667 | 210 | 127 | 1 | 276 | 479 | 8 | 217 | 1.00e-37 | 138 |
| Msa0363350 | AT5G04690.3 | 36.441 | 236 | 135 | 4 | 255 | 482 | 406 | 634 | 4.58e-37 | 145 |
| Msa0363350 | AT5G04690.1 | 36.441 | 236 | 135 | 4 | 255 | 482 | 386 | 614 | 4.80e-37 | 144 |
| Msa0363350 | AT5G04690.2 | 36.441 | 236 | 135 | 4 | 255 | 482 | 420 | 648 | 4.84e-37 | 145 |
| Msa0363350 | AT5G04680.2 | 31.661 | 319 | 188 | 7 | 182 | 482 | 224 | 530 | 2.14e-30 | 124 |
| Msa0363350 | AT5G04680.4 | 31.661 | 319 | 188 | 7 | 182 | 482 | 347 | 653 | 2.19e-30 | 125 |
| Msa0363350 | AT5G04680.3 | 31.661 | 319 | 188 | 7 | 182 | 482 | 333 | 639 | 2.22e-30 | 125 |
| Msa0363350 | AT5G04680.1 | 31.661 | 319 | 188 | 7 | 182 | 482 | 376 | 682 | 2.57e-30 | 125 |
Find 137 sgRNAs with CRISPR-Local
Find 407 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTATACCCTTGGCCTTTC+AGG | 0.155662 | 3_1:-55685057 | Msa0363350:CDS |
| TAAACGTGAGAAAGCAATTT+TGG | 0.156280 | 3_1:-55684066 | Msa0363350:CDS |
| TTTGCTTTGTCTTCAGTAAT+TGG | 0.161186 | 3_1:-55682769 | Msa0363350:CDS |
| TCAACTCTTGAACATATTTA+TGG | 0.163849 | 3_1:-55684755 | Msa0363350:CDS |
| GATATACATTAGAAGGAAAT+TGG | 0.184221 | 3_1:-55689057 | Msa0363350:five_prime_UTR |
| CGATTGCTTCATCAACGTTT+AGG | 0.226838 | 3_1:+55685933 | None:intergenic |
| CATATCAATTCTGAAATCTT+TGG | 0.253328 | 3_1:+55682684 | None:intergenic |
| CCATTGTTGTTGAGGCATTA+AGG | 0.256438 | 3_1:-55683899 | Msa0363350:CDS |
| TTCCAAGTTAAGGTCGTATA+TGG | 0.261111 | 3_1:+55683962 | None:intergenic |
| CTTAAATATAAGAATGAAAA+AGG | 0.283570 | 3_1:-55688872 | Msa0363350:five_prime_UTR |
| GTGGCATATAAAATGGTTTC+AGG | 0.287876 | 3_1:-55683733 | Msa0363350:intron |
| AGCGACGAACATTGCAATAA+TGG | 0.298105 | 3_1:+55682621 | None:intergenic |
| AATGATCAGATACCTTGATT+TGG | 0.300428 | 3_1:+55684622 | None:intergenic |
| TATGCCAAGGAAACTTCTTT+TGG | 0.300612 | 3_1:-55682665 | Msa0363350:CDS |
| ATTGACATGGATAACAATAA+TGG | 0.308005 | 3_1:-55688761 | Msa0363350:five_prime_UTR |
| AAAACTATGCCACATGTCTT+TGG | 0.311259 | 3_1:-55685098 | Msa0363350:CDS |
| GATTGCTTCATCAACGTTTA+GGG | 0.311454 | 3_1:+55685934 | None:intergenic |
| TAACATGTGTCGTAGTTCTT+TGG | 0.318984 | 3_1:+55685866 | None:intergenic |
| ACTCACATCTCCTGTTGGTT+TGG | 0.320602 | 3_1:+55684672 | None:intergenic |
| AAATGATGTGGCATATAAAA+TGG | 0.339034 | 3_1:-55683740 | Msa0363350:CDS |
| GTTCCAATCTCGATCACTTT+TGG | 0.346166 | 3_1:+55683782 | None:intergenic |
| ATGATCAGATACCTTGATTT+GGG | 0.347565 | 3_1:+55684623 | None:intergenic |
| ATGGTGGTCTGTGGTCTTCA+AGG | 0.353236 | 3_1:+55689537 | None:intergenic |
| TATCCCTTTAGCATGTCTTC+TGG | 0.357300 | 3_1:+55689076 | None:intergenic |
| CTAAAGGGATATACATTAGA+AGG | 0.366591 | 3_1:-55689064 | Msa0363350:five_prime_UTR |
| GTAGTAGCAGCACTCCTTGC+CGG | 0.383621 | 3_1:-55682883 | Msa0363350:CDS |
| ATTTCTATTGTGCTAAACTT+AGG | 0.384788 | 3_1:+55689004 | None:intergenic |
| TATATTTATATGTATGATGT+TGG | 0.391082 | 3_1:-55682276 | Msa0363350:three_prime_UTR |
| TCTCACTTCTTTATTGCTCA+TGG | 0.398104 | 3_1:+55689518 | None:intergenic |
| TCTCTTCCTCATCCACCCCT+TGG | 0.401557 | 3_1:+55683829 | None:intergenic |
| ATCACTTGTCTTTGGCACTT+TGG | 0.403980 | 3_1:+55682456 | None:intergenic |
| GAATCCTTATGAATCGTACT+TGG | 0.409285 | 3_1:-55684704 | Msa0363350:CDS |
| GTGCCAAAGACAAGTGATAA+GGG | 0.412267 | 3_1:-55682451 | Msa0363350:CDS |
| AAAGCGGATACAAGATGATA+TGG | 0.412635 | 3_1:-55687208 | Msa0363350:five_prime_UTR |
| GATCGAGATTGGAACATATC+TGG | 0.414209 | 3_1:-55683774 | Msa0363350:CDS |
| TTTGGTCAATAAGAAAGAAA+TGG | 0.416646 | 3_1:+55682587 | None:intergenic |
| ACCCTTGGCCTTTCAGGAGT+TGG | 0.424978 | 3_1:-55685051 | Msa0363350:intron |
| ATGGAGAATCGTATTGTTGA+AGG | 0.428871 | 3_1:-55684736 | Msa0363350:CDS |
| AATCCCAAAAGAAGTTTCCT+TGG | 0.428987 | 3_1:+55682661 | None:intergenic |
| GATATATGTGAATGTATCAT+AGG | 0.438316 | 3_1:-55688809 | Msa0363350:five_prime_UTR |
| ATATACATTAGAAGGAAATT+GGG | 0.442411 | 3_1:-55689056 | Msa0363350:five_prime_UTR |
| CTCTCAAACTTCTTGCTACT+AGG | 0.447146 | 3_1:-55687244 | Msa0363350:five_prime_UTR |
| TTCCATATACGACCTTAACT+TGG | 0.451334 | 3_1:-55683964 | Msa0363350:CDS |
| CTACCAAAAGTGATCGAGAT+TGG | 0.451436 | 3_1:-55683785 | Msa0363350:CDS |
| TTTGATTTCAACCCAAATCA+AGG | 0.452198 | 3_1:-55684634 | Msa0363350:intron |
| GCAGGCCTTCCTTCCAATGC+TGG | 0.454814 | 3_1:+55682802 | None:intergenic |
| GGCGGCAACAGAAGTGAAAC+AGG | 0.460466 | 3_1:-55682829 | Msa0363350:CDS |
| ATCGTCATTCAAAACAAACT+TGG | 0.462988 | 3_1:-55687275 | Msa0363350:five_prime_UTR |
| GTTTCACTTCTGTTGCCGCC+TGG | 0.465087 | 3_1:+55682832 | None:intergenic |
| TGCTTAGCAAAAGATATAAG+TGG | 0.467290 | 3_1:+55685810 | None:intergenic |
| ATCTCCTGTTGGTTTGGCAC+CGG | 0.473422 | 3_1:+55684678 | None:intergenic |
| GTTCTAACTGTGAAATGCTC+TGG | 0.475307 | 3_1:+55683009 | None:intergenic |
| AAATGGCATAGTTGAAATAG+TGG | 0.476650 | 3_1:-55684012 | Msa0363350:CDS |
| TATGAATCGTACTTGGGAAC+CGG | 0.477276 | 3_1:-55684697 | Msa0363350:CDS |
| GTTCCCAAGTACGATTCATA+AGG | 0.479991 | 3_1:+55684700 | None:intergenic |
| GGAACCGGTGCCAAACCAAC+AGG | 0.484101 | 3_1:-55684682 | Msa0363350:CDS |
| TTTGTATACATCTATACCCT+TGG | 0.487312 | 3_1:-55685066 | Msa0363350:CDS |
| AGTGCCAAAGACAAGTGATA+AGG | 0.491616 | 3_1:-55682452 | Msa0363350:CDS |
| TGAAACAGGTGAACCAGCAT+TGG | 0.494721 | 3_1:-55682815 | Msa0363350:CDS |
| TTGGCTTGTTCAAATAATAA+CGG | 0.499778 | 3_1:-55682390 | Msa0363350:three_prime_UTR |
| CATGAAGACCTGGTAACAAA+AGG | 0.500056 | 3_1:-55682943 | Msa0363350:CDS |
| CCACCACAATCACTTCTACC+TGG | 0.501326 | 3_1:+55688668 | None:intergenic |
| GTTCCACTCACATCTCCTGT+TGG | 0.501336 | 3_1:+55684667 | None:intergenic |
| GTATTCTTCACTGTGCCATC+CGG | 0.504088 | 3_1:-55688601 | Msa0363350:five_prime_UTR |
| TGAAACACTGATGGAATTGA+AGG | 0.504191 | 3_1:+55689561 | None:intergenic |
| CACATGGATCAGTATACTAA+AGG | 0.504814 | 3_1:-55683039 | Msa0363350:intron |
| ACTACTTCTAATGCTGCAAA+TGG | 0.506668 | 3_1:-55685768 | Msa0363350:intron |
| TCATAGGAGAAGGTGGTGAA+AGG | 0.507023 | 3_1:-55688793 | Msa0363350:five_prime_UTR |
| CTAAGAAGATCAATGTAAAG+TGG | 0.514162 | 3_1:+55682490 | None:intergenic |
| TCTCCAGAAGACATGCTAAA+GGG | 0.519808 | 3_1:-55689079 | Msa0363350:five_prime_UTR |
| CTTGATGCTGCAAGGTGCAA+AGG | 0.522226 | 3_1:+55688842 | None:intergenic |
| TGAATCCTCTTGATGCTGCA+AGG | 0.522236 | 3_1:+55688834 | None:intergenic |
| AACAAAGATGACAAAACAGC+TGG | 0.522635 | 3_1:-55682985 | Msa0363350:CDS |
| AAGTATACTGCTTCAAACAT+AGG | 0.527221 | 3_1:+55682362 | None:intergenic |
| TATATGCCACATCATTTGCA+AGG | 0.529923 | 3_1:+55683746 | None:intergenic |
| GTGAACCAGCATTGGAAGGA+AGG | 0.530748 | 3_1:-55682807 | Msa0363350:CDS |
| GGAAGAAGCTTGCGTTCAGA+TGG | 0.532689 | 3_1:+55685156 | None:intergenic |
| AAAGATCTTATTCGAAGCAA+TGG | 0.536817 | 3_1:-55688629 | Msa0363350:five_prime_UTR |
| TATAAACTGCGTACCTTCAG+TGG | 0.541428 | 3_1:+55689470 | None:intergenic |
| ATGAAGCAATCGAATATTGT+CGG | 0.541968 | 3_1:-55685922 | Msa0363350:five_prime_UTR |
| CAGAAGAACCATTGTTGTTG+AGG | 0.542648 | 3_1:-55683907 | Msa0363350:CDS |
| TCAACGTTTAGGGTTCCTGC+AGG | 0.543035 | 3_1:+55685944 | None:intergenic |
| ATATTTCATGATCTAATCCA+AGG | 0.544119 | 3_1:-55683846 | Msa0363350:CDS |
| TCTAATCCAAGGGGTGGATG+AGG | 0.548428 | 3_1:-55683835 | Msa0363350:CDS |
| CAAGAAATCACATGAAGACC+TGG | 0.549895 | 3_1:-55682953 | Msa0363350:CDS |
| CACTTCTTTATTGCTCATGG+TGG | 0.550626 | 3_1:+55689521 | None:intergenic |
| TGGTAACAAAAGGTAGTGAA+TGG | 0.552482 | 3_1:-55682933 | Msa0363350:CDS |
| GTCTCCAGAAGACATGCTAA+AGG | 0.552591 | 3_1:-55689080 | Msa0363350:five_prime_UTR |
| CTATCAAAAGGTATACCTGC+AGG | 0.557521 | 3_1:-55685959 | Msa0363350:intron |
| TTAAGGTCGTATATGGAACT+TGG | 0.559940 | 3_1:+55683969 | None:intergenic |
| ATTTCAGAATTGATATGCCA+AGG | 0.560690 | 3_1:-55682678 | Msa0363350:CDS |
| TACCAACTCCTGAAAGGCCA+AGG | 0.563628 | 3_1:+55685049 | None:intergenic |
| TTGCACCTTGCAGCATCAAG+AGG | 0.564363 | 3_1:-55688839 | Msa0363350:five_prime_UTR |
| CCTTAATGCCTCAACAACAA+TGG | 0.566172 | 3_1:+55683899 | None:intergenic |
| TGGAAGAAGCTTGCGTTCAG+AGG | 0.568522 | 3_1:+55685122 | None:intergenic |
| CTACACGTGGCAGTAAATGA+TGG | 0.568764 | 3_1:-55688959 | Msa0363350:five_prime_UTR |
| GCTACTGCATACAAAGTCAC+AGG | 0.569943 | 3_1:+55682520 | None:intergenic |
| AATCCTTATGAATCGTACTT+GGG | 0.574175 | 3_1:-55684703 | Msa0363350:CDS |
| AGCAAGTGACTGAATAAATG+AGG | 0.575232 | 3_1:+55682545 | None:intergenic |
| GCTACATCAAGCACTGTACC+AGG | 0.575420 | 3_1:-55682850 | Msa0363350:CDS |
| ATATGTATGATGTTGGATTG+TGG | 0.575658 | 3_1:-55682269 | Msa0363350:three_prime_UTR |
| TTATTGCTCATGGTGGTCTG+TGG | 0.578497 | 3_1:+55689528 | None:intergenic |
| AAGGAAGTATTTAATTGACA+TGG | 0.578660 | 3_1:-55688774 | Msa0363350:five_prime_UTR |
| AAAGCAAATGCATCAAATGC+AGG | 0.578955 | 3_1:+55682784 | None:intergenic |
| TGTGAATGTATCATAGGAGA+AGG | 0.583544 | 3_1:-55688803 | Msa0363350:five_prime_UTR |
| ATATGGAAGAGAAAGACAAA+AGG | 0.583591 | 3_1:-55685182 | Msa0363350:CDS |
| CTTCAAGGTTGAAACACTGA+TGG | 0.588634 | 3_1:+55689552 | None:intergenic |
| AAACCAGGTAGAAGTGATTG+TGG | 0.592057 | 3_1:-55688671 | Msa0363350:five_prime_UTR |
| TTCGAGAAGTGAGTATGGAT+AGG | 0.593626 | 3_1:+55682713 | None:intergenic |
| GACACTTACCAACTCCTGAA+AGG | 0.593684 | 3_1:+55685043 | None:intergenic |
| TATTTCATGATCTAATCCAA+GGG | 0.595954 | 3_1:-55683845 | Msa0363350:CDS |
| ACAGGTGAACCAGCATTGGA+AGG | 0.599054 | 3_1:-55682811 | Msa0363350:CDS |
| TACAGTGCTTGATGTAGCGA+AGG | 0.603317 | 3_1:+55682855 | None:intergenic |
| CTAGTAGCAAGAAGTTTGAG+AGG | 0.605951 | 3_1:+55687245 | None:intergenic |
| GACACCACACACACCACTGA+AGG | 0.606720 | 3_1:-55689483 | Msa0363350:intron |
| ATAGAAATCAACAAAAGTAG+AGG | 0.623346 | 3_1:-55688989 | Msa0363350:five_prime_UTR |
| TGCCAAAGACAAGTGATAAG+GGG | 0.626830 | 3_1:-55682450 | Msa0363350:CDS |
| ATGATGAAGTGAAAATGTGT+TGG | 0.626914 | 3_1:-55682409 | Msa0363350:three_prime_UTR |
| TCATGATCTAATCCAAGGGG+TGG | 0.632793 | 3_1:-55683841 | Msa0363350:CDS |
| GCGGATACAAGATGATATGG+TGG | 0.635479 | 3_1:-55687205 | Msa0363350:five_prime_UTR |
| GAAACACTGATGGAATTGAA+GGG | 0.635941 | 3_1:+55689562 | None:intergenic |
| TGATGTAGCGAAGGAAACAC+CGG | 0.642955 | 3_1:+55682864 | None:intergenic |
| GCCAAAGACAAGTGATAAGG+GGG | 0.646133 | 3_1:-55682449 | Msa0363350:CDS |
| AGGCCCTCAGCCTTCAAAAG+CGG | 0.649354 | 3_1:-55687224 | Msa0363350:five_prime_UTR |
| TAGCGAAGGAAACACCGGCA+AGG | 0.651641 | 3_1:+55682869 | None:intergenic |
| ACCAACTCCTGAAAGGCCAA+GGG | 0.656443 | 3_1:+55685050 | None:intergenic |
| GAATGTATCATAGGAGAAGG+TGG | 0.662333 | 3_1:-55688800 | Msa0363350:five_prime_UTR |
| CTACTGCATACAAAGTCACA+GGG | 0.663393 | 3_1:+55682521 | None:intergenic |
| TATCTCATCAAGTTTAAACC+AGG | 0.665314 | 3_1:-55688686 | Msa0363350:five_prime_UTR |
| TGCAGGAGATAACAAAGATG+AGG | 0.668983 | 3_1:-55684111 | Msa0363350:intron |
| TAGAGGAACAGCACTACACG+TGG | 0.671680 | 3_1:-55688972 | Msa0363350:five_prime_UTR |
| AAACCAACAGGAGATGTGAG+TGG | 0.671744 | 3_1:-55684670 | Msa0363350:CDS |
| GTGCAGCCTTGCAAATGATG+TGG | 0.672833 | 3_1:-55683752 | Msa0363350:CDS |
| CGTACCTTCAGTGGTGTGTG+TGG | 0.673777 | 3_1:+55689479 | None:intergenic |
| CCAGGTAGAAGTGATTGTGG+TGG | 0.676500 | 3_1:-55688668 | Msa0363350:five_prime_UTR |
| ATTTCATGATCTAATCCAAG+GGG | 0.703327 | 3_1:-55683844 | Msa0363350:CDS |
| ACATCAAGCACTGTACCAGG+CGG | 0.758516 | 3_1:-55682847 | Msa0363350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAATAAAAAAAT+TGG | + | chr3_1:55685645-55685664 | None:intergenic | 0.0% |
| !!! | TTTTTCATTCTTATATTTAA+GGG | + | chr3_1:55682879-55682898 | None:intergenic | 10.0% |
| !!! | TTTTAATCTATAATAAGTTA+TGG | + | chr3_1:55683634-55683653 | None:intergenic | 10.0% |
| !! | AATATACATAAATATTAGTA+CGG | + | chr3_1:55684405-55684424 | None:intergenic | 10.0% |
| !!! | TTTTTAAAACACTATATATT+TGG | - | chr3_1:55684841-55684860 | Msa0363350:intron | 10.0% |
| !! | TAAAAAATAAAAAAATTGGT+GGG | + | chr3_1:55685641-55685660 | None:intergenic | 10.0% |
| !! | ATAAAAAATAAAAAAATTGG+TGG | + | chr3_1:55685642-55685661 | None:intergenic | 10.0% |
| !!! | TATTAGTGATTAATTTTCAT+CGG | + | chr3_1:55682405-55682424 | None:intergenic | 15.0% |
| !! | ATAATATAAAAATATGCTGA+AGG | - | chr3_1:55682506-55682525 | Msa0363350:CDS | 15.0% |
| !!! | CTTTTTCATTCTTATATTTA+AGG | + | chr3_1:55682880-55682899 | None:intergenic | 15.0% |
| !! | CTTAAATATAAGAATGAAAA+AGG | - | chr3_1:55682878-55682897 | Msa0363350:CDS | 15.0% |
| !!! | CATATTATGAATTTTGTATT+TGG | - | chr3_1:55683224-55683243 | Msa0363350:intron | 15.0% |
| !! | TTTATGAATGTGTAAAATAT+TGG | + | chr3_1:55684020-55684039 | None:intergenic | 15.0% |
| !!! | TAATAATTTAGAATCAGTTT+TGG | + | chr3_1:55684202-55684221 | None:intergenic | 15.0% |
| !!! | TTTAATGAATTTTGTCAATA+GGG | + | chr3_1:55684720-55684739 | None:intergenic | 15.0% |
| !!! | TTTTAATGAATTTTGTCAAT+AGG | + | chr3_1:55684721-55684740 | None:intergenic | 15.0% |
| !!! | TTATTGATAATTGTTTGTTA+TGG | - | chr3_1:55685116-55685135 | Msa0363350:CDS | 15.0% |
| !!! | TATTGATAATTGTTTGTTAT+GGG | - | chr3_1:55685117-55685136 | Msa0363350:CDS | 15.0% |
| !! | AAAAATGCATAATATATTCA+AGG | + | chr3_1:55685257-55685276 | None:intergenic | 15.0% |
| !! | GAAAAGAAATAAGAATTTAT+TGG | - | chr3_1:55685372-55685391 | Msa0363350:intron | 15.0% |
| !! | AAAAAATAAAAAAATTGGTG+GGG | + | chr3_1:55685640-55685659 | None:intergenic | 15.0% |
| !!! | ATATTTCTAATGAACAAAAA+AGG | + | chr3_1:55685724-55685743 | None:intergenic | 15.0% |
| !!! | ATATTTGATTTAGTCTATTT+TGG | + | chr3_1:55686333-55686352 | None:intergenic | 15.0% |
| !! | AAATATAAATTGAAACCATT+TGG | - | chr3_1:55686347-55686366 | Msa0363350:intron | 15.0% |
| !!! | TTTTTTTATTCTCAAAATGA+GGG | + | chr3_1:55686449-55686468 | None:intergenic | 15.0% |
| !! | TAAAAATGCAATGATATATT+TGG | + | chr3_1:55687322-55687341 | None:intergenic | 15.0% |
| !!! | TTATTATTTTAAATCAAGGA+CGG | - | chr3_1:55687348-55687367 | Msa0363350:intron | 15.0% |
| !!! | TTTTGAAATATGCATTATTT+TGG | + | chr3_1:55688113-55688132 | None:intergenic | 15.0% |
| !! | TATATTTATATGTATGATGT+TGG | - | chr3_1:55689474-55689493 | Msa0363350:intron | 15.0% |
| !! | TTACTACTTGGAAAAAAAAA+TGG | + | chr3_1:55682646-55682665 | None:intergenic | 20.0% |
| !! | ATATACATTAGAAGGAAATT+GGG | - | chr3_1:55682694-55682713 | Msa0363350:CDS | 20.0% |
| !! | AGATTAAAAGTTGAATATGA+TGG | - | chr3_1:55683645-55683664 | Msa0363350:intron | 20.0% |
| !! | GATTAAAAGTTGAATATGAT+GGG | - | chr3_1:55683646-55683665 | Msa0363350:intron | 20.0% |
| !! | AAGTAAATAATTACACTTGA+TGG | + | chr3_1:55683880-55683899 | None:intergenic | 20.0% |
| !!! | AGAAAGGATAAAAAAAGTAT+AGG | - | chr3_1:55684147-55684166 | Msa0363350:intron | 20.0% |
| !! | ATTAATTTCTTTAACTAGTG+CGG | - | chr3_1:55684359-55684378 | Msa0363350:intron | 20.0% |
| !! | ATATTATATTGCAACAGATT+TGG | - | chr3_1:55684420-55684439 | Msa0363350:intron | 20.0% |
| !!! | AATTTTGATTAATGTGAAGT+TGG | - | chr3_1:55685025-55685044 | Msa0363350:intron | 20.0% |
| !!! | AACTAATAACTGTTTTTTAG+TGG | - | chr3_1:55685209-55685228 | Msa0363350:intron | 20.0% |
| !!! | ATTTATTGGTTGATTAAATG+AGG | - | chr3_1:55685386-55685405 | Msa0363350:intron | 20.0% |
| !!! | TTTATTGGTTGATTAAATGA+GGG | - | chr3_1:55685387-55685406 | Msa0363350:intron | 20.0% |
| !! | TATAATTTAACTACTTCCTT+CGG | + | chr3_1:55685489-55685508 | None:intergenic | 20.0% |
| !! | TTTATATTATGACAAAGACA+AGG | + | chr3_1:55685547-55685566 | None:intergenic | 20.0% |
| !!! | TATTTTCTTAGAAGATTTAG+AGG | - | chr3_1:55686130-55686149 | Msa0363350:intron | 20.0% |
| !!! | CTTTTTTTATTCTCAAAATG+AGG | + | chr3_1:55686450-55686469 | None:intergenic | 20.0% |
| !!! | TGTTTTCAAAATTTGCTTAA+AGG | - | chr3_1:55686927-55686946 | Msa0363350:intron | 20.0% |
| !!! | GTTTTCAAAATTTGCTTAAA+GGG | - | chr3_1:55686928-55686947 | Msa0363350:intron | 20.0% |
| !!! | TTTTCAAAATTTGCTTAAAG+GGG | - | chr3_1:55686929-55686948 | Msa0363350:intron | 20.0% |
| !! | ATGAAATGTCCTTAATTAAA+AGG | + | chr3_1:55687450-55687469 | None:intergenic | 20.0% |
| !!! | CATTTTTATTTTCCAAGTTA+AGG | + | chr3_1:55687801-55687820 | None:intergenic | 20.0% |
| !!! | TATTTCTTTTCTTTCAAATC+AGG | - | chr3_1:55688040-55688059 | Msa0363350:intron | 20.0% |
| !! | TATAAAGAAAAATATCCTCT+GGG | + | chr3_1:55688324-55688343 | None:intergenic | 20.0% |
| !! | TTATAAAGAAAAATATCCTC+TGG | + | chr3_1:55688325-55688344 | None:intergenic | 20.0% |
| !!! | CTTTATAATTTTAACACCTT+CGG | - | chr3_1:55688337-55688356 | Msa0363350:intron | 20.0% |
| !! | GTATTATGAGGATATTTATT+AGG | + | chr3_1:55688407-55688426 | None:intergenic | 20.0% |
| !!! | TTACCAATGATTTTTTTTGC+CGG | - | chr3_1:55682307-55682326 | Msa0363350:intron | 25.0% |
| ! | CATAATATATGCAAAGTTCA+GGG | + | chr3_1:55682341-55682360 | None:intergenic | 25.0% |
| ! | TAAGCTTAACTCAGTTAATA+AGG | + | chr3_1:55682370-55682389 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | - | chr3_1:55682608-55682627 | Msa0363350:CDS | 25.0% |
| ! | GATATACATTAGAAGGAAAT+TGG | - | chr3_1:55682693-55682712 | Msa0363350:CDS | 25.0% |
| ! | ATTTCTATTGTGCTAAACTT+AGG | + | chr3_1:55682749-55682768 | None:intergenic | 25.0% |
| ! | ATAGAAATCAACAAAAGTAG+AGG | - | chr3_1:55682761-55682780 | Msa0363350:CDS | 25.0% |
| ! | AATCTTAAGTCACAAAAATG+AGG | - | chr3_1:55682847-55682866 | Msa0363350:CDS | 25.0% |
| ! | GATATATGTGAATGTATCAT+AGG | - | chr3_1:55682941-55682960 | Msa0363350:CDS | 25.0% |
| !!! | AAGGAAGTATTTAATTGACA+TGG | - | chr3_1:55682976-55682995 | Msa0363350:CDS | 25.0% |
| ! | ATTGACATGGATAACAATAA+TGG | - | chr3_1:55682989-55683008 | Msa0363350:CDS | 25.0% |
| ! | AATTACCAAAAAATTCTCTC+CGG | + | chr3_1:55683171-55683190 | None:intergenic | 25.0% |
| ! | GAATTCATGAATTTCTATGT+CGG | - | chr3_1:55683460-55683479 | Msa0363350:intron | 25.0% |
| !!! | ATAATGACTTAAGGTTTTGA+TGG | + | chr3_1:55683767-55683786 | None:intergenic | 25.0% |
| ! | GACTTATGTATAATGACTTA+AGG | + | chr3_1:55683776-55683795 | None:intergenic | 25.0% |
| !!! | TTATTGATTTATAAGCGATG+TGG | - | chr3_1:55683818-55683837 | Msa0363350:CDS | 25.0% |
| !!! | TATTGATTTATAAGCGATGT+GGG | - | chr3_1:55683819-55683838 | Msa0363350:CDS | 25.0% |
| ! | ATAATGCTCAAATAAGCTAA+TGG | - | chr3_1:55684099-55684118 | Msa0363350:CDS | 25.0% |
| ! | AACTCCTTTACTCAAAATTA+AGG | + | chr3_1:55684982-55685001 | None:intergenic | 25.0% |
| !!! | TAATAACTGTTTTTTAGTGG+TGG | - | chr3_1:55685212-55685231 | Msa0363350:intron | 25.0% |
| ! | TTCCAAAACGATATTTCAAA+AGG | - | chr3_1:55685462-55685481 | Msa0363350:intron | 25.0% |
| ! | TTAATATTTCCGTTCTTCAT+AGG | + | chr3_1:55685522-55685541 | None:intergenic | 25.0% |
| !!! | GTCGTGATATTTTTTCTATT+TGG | - | chr3_1:55686061-55686080 | Msa0363350:intron | 25.0% |
| !!! | ATATTTTTTCTATTTGGCCA+GGG | - | chr3_1:55686067-55686086 | Msa0363350:intron | 25.0% |
| ! | AAGATTTAGAGGAATAGATA+AGG | - | chr3_1:55686141-55686160 | Msa0363350:intron | 25.0% |
| ! | GGCTATTACAATGATTAAAA+TGG | - | chr3_1:55686162-55686181 | Msa0363350:intron | 25.0% |
| ! | TGAGAATAAAAAAAGCAGTA+TGG | - | chr3_1:55686455-55686474 | Msa0363350:intron | 25.0% |
| !!! | AAATTAAGCTATGTTTTTGC+AGG | - | chr3_1:55686537-55686556 | Msa0363350:intron | 25.0% |
| !! | TTTTGCAGGATCTAAAAATA+TGG | - | chr3_1:55686551-55686570 | Msa0363350:intron | 25.0% |
| ! | ATCCCAAATGAAAAATGTTT+GGG | + | chr3_1:55686878-55686897 | None:intergenic | 25.0% |
| ! | CCATAAAACAATAACAATCA+AGG | + | chr3_1:55686906-55686925 | None:intergenic | 25.0% |
| !!! | CCTTGATTGTTATTGTTTTA+TGG | - | chr3_1:55686903-55686922 | Msa0363350:intron | 25.0% |
| ! | TCAACTCTTGAACATATTTA+TGG | - | chr3_1:55686995-55687014 | Msa0363350:intron | 25.0% |
| !!! | GATTAACGACCTTTTAATTA+AGG | - | chr3_1:55687438-55687457 | Msa0363350:intron | 25.0% |
| ! | ATAACATAAATGAAACTTGC+AGG | - | chr3_1:55687622-55687641 | Msa0363350:intron | 25.0% |
| !! | TAAGTTTTGCAGAAATCTTT+GGG | + | chr3_1:55687666-55687685 | None:intergenic | 25.0% |
| !! | TTAAGTTTTGCAGAAATCTT+TGG | + | chr3_1:55687667-55687686 | None:intergenic | 25.0% |
| !!! | TTTTGAAAAGTGCAATAAAG+AGG | - | chr3_1:55687879-55687898 | Msa0363350:intron | 25.0% |
| ! | ATATTTCATGATCTAATCCA+AGG | - | chr3_1:55687904-55687923 | Msa0363350:intron | 25.0% |
| ! | TATTTCATGATCTAATCCAA+GGG | - | chr3_1:55687905-55687924 | Msa0363350:intron | 25.0% |
| ! | AAATGATGTGGCATATAAAA+TGG | - | chr3_1:55688010-55688029 | Msa0363350:intron | 25.0% |
| ! | ATTTACAGTCACAATTTAAG+TGG | + | chr3_1:55688177-55688196 | None:intergenic | 25.0% |
| ! | TGTAAATGTGTTTGCAATTT+GGG | - | chr3_1:55688190-55688209 | Msa0363350:intron | 25.0% |
| !!! | CATATCAATTCTGAAATCTT+TGG | + | chr3_1:55689069-55689088 | None:intergenic | 25.0% |
| ! | TTTGGTCAATAAGAAAGAAA+TGG | + | chr3_1:55689166-55689185 | None:intergenic | 25.0% |
| !!! | TTGGCTTGTTCAAATAATAA+CGG | - | chr3_1:55689360-55689379 | Msa0363350:intron | 25.0% |
| GCATAATATATGCAAAGTTC+AGG | + | chr3_1:55682342-55682361 | None:intergenic | 30.0% | |
| GATTAGAGTTATTCCTTGTT+TGG | + | chr3_1:55682624-55682643 | None:intergenic | 30.0% | |
| CTAAAGGGATATACATTAGA+AGG | - | chr3_1:55682686-55682705 | Msa0363350:CDS | 30.0% | |
| TATCTCATCAAGTTTAAACC+AGG | - | chr3_1:55683064-55683083 | Msa0363350:intron | 30.0% | |
| AAAGATCTTATTCGAAGCAA+TGG | - | chr3_1:55683121-55683140 | Msa0363350:intron | 30.0% | |
| TTTCTAATGTGTGCAATGTT+TGG | - | chr3_1:55683484-55683503 | Msa0363350:intron | 30.0% | |
| TTGCATTGAAATGAGTGTTA+AGG | - | chr3_1:55683585-55683604 | Msa0363350:intron | 30.0% | |
| ! | TAAAAGTTGAATATGATGGG+AGG | - | chr3_1:55683649-55683668 | Msa0363350:intron | 30.0% |
| !! | ATGGTTTGTTTAACAACCTT+AGG | - | chr3_1:55684118-55684137 | Msa0363350:intron | 30.0% |
| TATCCTTTCTTAATTGCCTA+AGG | + | chr3_1:55684137-55684156 | None:intergenic | 30.0% | |
| ! | TTTTGAATGACGATAAGATC+AGG | + | chr3_1:55684469-55684488 | None:intergenic | 30.0% |
| ATCGTCATTCAAAACAAACT+TGG | - | chr3_1:55684475-55684494 | Msa0363350:intron | 30.0% | |
| TTCTTAGTTACCATGAAGTT+TGG | - | chr3_1:55684679-55684698 | Msa0363350:CDS | 30.0% | |
| ATATACCTAACCAAACTTCA+TGG | + | chr3_1:55684692-55684711 | None:intergenic | 30.0% | |
| CAAAATTAAGGCTTCAACTA+TGG | + | chr3_1:55684970-55684989 | None:intergenic | 30.0% | |
| !! | GAAGCCTTAATTTTGAGTAA+AGG | - | chr3_1:55684975-55684994 | Msa0363350:intron | 30.0% |
| TGCATAATATATTCAAGGTC+CGG | + | chr3_1:55685252-55685271 | None:intergenic | 30.0% | |
| ! | TGATTAAATGAGGGTATACT+AGG | - | chr3_1:55685396-55685415 | Msa0363350:intron | 30.0% |
| GGAATAGTAACGCTAAATTA+AGG | + | chr3_1:55685446-55685465 | None:intergenic | 30.0% | |
| !!! | GTCCTTTTGAAATATCGTTT+TGG | + | chr3_1:55685467-55685486 | None:intergenic | 30.0% |
| ! | CTTATCCCATTTTCCTTTTA+AGG | - | chr3_1:55685600-55685619 | Msa0363350:intron | 30.0% |
| ACAAGCCTTAAAAGGAAAAT+GGG | + | chr3_1:55685608-55685627 | None:intergenic | 30.0% | |
| AACAAGCCTTAAAAGGAAAA+TGG | + | chr3_1:55685609-55685628 | None:intergenic | 30.0% | |
| ! | GCATCTTATTTCATCTTTAG+AGG | + | chr3_1:55685678-55685697 | None:intergenic | 30.0% |
| TGTTATGACACACTATCAAA+AGG | - | chr3_1:55685779-55685798 | Msa0363350:CDS | 30.0% | |
| ATGAAGCAATCGAATATTGT+CGG | - | chr3_1:55685828-55685847 | Msa0363350:CDS | 30.0% | |
| ! | TTCTTTGGACATAACTTTTG+TGG | + | chr3_1:55685872-55685891 | None:intergenic | 30.0% |
| TGCTTAGCAAAAGATATAAG+TGG | + | chr3_1:55685943-55685962 | None:intergenic | 30.0% | |
| !!! | GATATTTTTTCTATTTGGCC+AGG | - | chr3_1:55686066-55686085 | Msa0363350:intron | 30.0% |
| !! | TCTGAAGTAGATAAGGATTT+TGG | - | chr3_1:55686090-55686109 | Msa0363350:intron | 30.0% |
| ! | CTGAAGTAGATAAGGATTTT+GGG | - | chr3_1:55686091-55686110 | Msa0363350:intron | 30.0% |
| ! | TGAAGTAGATAAGGATTTTG+GGG | - | chr3_1:55686092-55686111 | Msa0363350:intron | 30.0% |
| ATGATTAAAATGGTCCAATG+CGG | - | chr3_1:55686172-55686191 | Msa0363350:intron | 30.0% | |
| !! | TTTGGATTTTTCGAAATCCA+AGG | + | chr3_1:55686315-55686334 | None:intergenic | 30.0% |
| CTCAGAGAAAATTTATGCTA+TGG | + | chr3_1:55686407-55686426 | None:intergenic | 30.0% | |
| !! | TAAATTTTCTCTGAGAGACA+TGG | - | chr3_1:55686412-55686431 | Msa0363350:intron | 30.0% |
| ATATGGAAGAGAAAGACAAA+AGG | - | chr3_1:55686568-55686587 | Msa0363350:intron | 30.0% | |
| TTTGTATACATCTATACCCT+TGG | - | chr3_1:55686684-55686703 | Msa0363350:intron | 30.0% | |
| ATCTTACTTGAACACAACAT+CGG | - | chr3_1:55686761-55686780 | Msa0363350:intron | 30.0% | |
| GATCCCAAATGAAAAATGTT+TGG | + | chr3_1:55686879-55686898 | None:intergenic | 30.0% | |
| GGGTTGAAGAAATTAAAAAG+AGG | - | chr3_1:55686949-55686968 | Msa0363350:intron | 30.0% | |
| AATCCTTATGAATCGTACTT+GGG | - | chr3_1:55687047-55687066 | Msa0363350:intron | 30.0% | |
| ! | TTTGATTTCAACCCAAATCA+AGG | - | chr3_1:55687116-55687135 | Msa0363350:intron | 30.0% |
| ATGATCAGATACCTTGATTT+GGG | + | chr3_1:55687130-55687149 | None:intergenic | 30.0% | |
| AATGATCAGATACCTTGATT+TGG | + | chr3_1:55687131-55687150 | None:intergenic | 30.0% | |
| !! | AAGGTATCTGATCATTTTAG+TGG | - | chr3_1:55687135-55687154 | Msa0363350:intron | 30.0% |
| ! | CATTTCGATTTGATCATAAG+TGG | - | chr3_1:55687221-55687240 | Msa0363350:five_prime_UTR | 30.0% |
| AACGGTTGTAAAACAATCAT+TGG | + | chr3_1:55687402-55687421 | None:intergenic | 30.0% | |
| !! | GATTGTTTTACAACCGTTTT+TGG | - | chr3_1:55687404-55687423 | Msa0363350:intron | 30.0% |
| TAGTAACACACAGATCAATT+TGG | + | chr3_1:55687531-55687550 | None:intergenic | 30.0% | |
| ! | AAATTGATCTGTGTGTTACT+AGG | - | chr3_1:55687530-55687549 | Msa0363350:intron | 30.0% |
| ! | TAAACGTGAGAAAGCAATTT+TGG | - | chr3_1:55687684-55687703 | Msa0363350:intron | 30.0% |
| AAATGGCATAGTTGAAATAG+TGG | - | chr3_1:55687738-55687757 | Msa0363350:intron | 30.0% | |
| ATTTCATGATCTAATCCAAG+GGG | - | chr3_1:55687906-55687925 | Msa0363350:intron | 30.0% | |
| ! | CATCGAATTTTAAACTACGA+CGG | + | chr3_1:55688068-55688087 | None:intergenic | 30.0% |
| CTGTAAATGTGTTTGCAATT+TGG | - | chr3_1:55688189-55688208 | Msa0363350:intron | 30.0% | |
| !! | TATTGATTGGTTTGGATACT+GGG | + | chr3_1:55688232-55688251 | None:intergenic | 30.0% |
| ! | TCAAAGACTATTGATTGGTT+TGG | + | chr3_1:55688240-55688259 | None:intergenic | 30.0% |
| ! | CGTCTCTTGTATCTTTTAAT+GGG | + | chr3_1:55688298-55688317 | None:intergenic | 30.0% |
| ! | TCGTCTCTTGTATCTTTTAA+TGG | + | chr3_1:55688299-55688318 | None:intergenic | 30.0% |
| TTTGCTTTGTCTTCAGTAAT+TGG | - | chr3_1:55688981-55689000 | Msa0363350:five_prime_UTR | 30.0% | |
| ATTTCAGAATTGATATGCCA+AGG | - | chr3_1:55689072-55689091 | Msa0363350:five_prime_UTR | 30.0% | |
| ! | ACACAATGTGCTTGTATTTT+TGG | + | chr3_1:55689184-55689203 | None:intergenic | 30.0% |
| CTAAGAAGATCAATGTAAAG+TGG | + | chr3_1:55689263-55689282 | None:intergenic | 30.0% | |
| ATGATGAAGTGAAAATGTGT+TGG | - | chr3_1:55689341-55689360 | Msa0363350:intron | 30.0% | |
| AAGTATACTGCTTCAAACAT+AGG | + | chr3_1:55689391-55689410 | None:intergenic | 30.0% | |
| ATATGTATGATGTTGGATTG+TGG | - | chr3_1:55689481-55689500 | Msa0363350:intron | 30.0% | |
| TCTCACTTCTTTATTGCTCA+TGG | + | chr3_1:55682235-55682254 | None:intergenic | 35.0% | |
| ACTCCGGCAAAAAAAATCAT+TGG | + | chr3_1:55682313-55682332 | None:intergenic | 35.0% | |
| AAAGTTCAGGGTTTAAACTC+CGG | + | chr3_1:55682329-55682348 | None:intergenic | 35.0% | |
| TTAACTGAGTTAAGCTTACG+AGG | - | chr3_1:55682372-55682391 | Msa0363350:three_prime_UTR | 35.0% | |
| CTTAAGTCACAAAAATGAGG+AGG | - | chr3_1:55682850-55682869 | Msa0363350:CDS | 35.0% | |
| TGTGAATGTATCATAGGAGA+AGG | - | chr3_1:55682947-55682966 | Msa0363350:CDS | 35.0% | |
| GACAATGCAGCAAAAAACAA+GGG | + | chr3_1:55683022-55683041 | None:intergenic | 35.0% | |
| AGACAATGCAGCAAAAAACA+AGG | + | chr3_1:55683023-55683042 | None:intergenic | 35.0% | |
| !!! | TGTTTTTTGCTGCATTGTCT+TGG | - | chr3_1:55683023-55683042 | Msa0363350:CDS | 35.0% |
| CAACAACAAACCAATGGTTT+AGG | - | chr3_1:55683714-55683733 | Msa0363350:intron | 35.0% | |
| ! | TGTTGGATTTCAAGTGTGAA+TGG | + | chr3_1:55683851-55683870 | None:intergenic | 35.0% |
| ACACTTGATGGAGATATTGT+TGG | + | chr3_1:55683868-55683887 | None:intergenic | 35.0% | |
| AGAAGTGACTCATATACTTG+AGG | + | chr3_1:55683988-55684007 | None:intergenic | 35.0% | |
| GAAGTAGAGAATGTTCTGTT+GGG | + | chr3_1:55684074-55684093 | None:intergenic | 35.0% | |
| AGAAGTAGAGAATGTTCTGT+TGG | + | chr3_1:55684075-55684094 | None:intergenic | 35.0% | |
| CAACCTTAGGCAATTAAGAA+AGG | - | chr3_1:55684131-55684150 | Msa0363350:intron | 35.0% | |
| TTTCTTTAACTAGTGCGGTA+AGG | - | chr3_1:55684364-55684383 | Msa0363350:intron | 35.0% | |
| AAAGCGGATACAAGATGATA+TGG | - | chr3_1:55684542-55684561 | Msa0363350:intron | 35.0% | |
| AGTTACCATGAAGTTTGGTT+AGG | - | chr3_1:55684684-55684703 | Msa0363350:CDS | 35.0% | |
| AATCTATGTCACATAGTGTG+AGG | - | chr3_1:55684928-55684947 | Msa0363350:intron | 35.0% | |
| !!! | AACTGTTTTTTAGTGGTGGT+CGG | - | chr3_1:55685216-55685235 | Msa0363350:intron | 35.0% |
| ! | GAGGGTATACTAGGATTAAA+AGG | - | chr3_1:55685405-55685424 | Msa0363350:intron | 35.0% |
| GTAACGCTAAATTAAGGAAG+TGG | + | chr3_1:55685440-55685459 | None:intergenic | 35.0% | |
| AACCAGTATCCTATGAAGAA+CGG | - | chr3_1:55685510-55685529 | Msa0363350:intron | 35.0% | |
| GGGATAAGATTTGTATACTC+AGG | + | chr3_1:55685588-55685607 | None:intergenic | 35.0% | |
| TCAAGTCAACAAGCCTTAAA+AGG | + | chr3_1:55685616-55685635 | None:intergenic | 35.0% | |
| GATTGCTTCATCAACGTTTA+GGG | + | chr3_1:55685819-55685838 | None:intergenic | 35.0% | |
| TAACATGTGTCGTAGTTCTT+TGG | + | chr3_1:55685887-55685906 | None:intergenic | 35.0% | |
| ACTACTTCTAATGCTGCAAA+TGG | - | chr3_1:55685982-55686001 | Msa0363350:intron | 35.0% | |
| !! | GATTTTTCGAAATCCAAGGT+AGG | + | chr3_1:55686311-55686330 | None:intergenic | 35.0% |
| AAAACTATGCCACATGTCTT+TGG | - | chr3_1:55686652-55686671 | Msa0363350:intron | 35.0% | |
| CTTCAAAAACCAAAGACATG+TGG | + | chr3_1:55686664-55686683 | None:intergenic | 35.0% | |
| TTCAGATAACGAGATCAACT+AGG | + | chr3_1:55686737-55686756 | None:intergenic | 35.0% | |
| ! | TCGCCCAAACATTTTTCATT+TGG | - | chr3_1:55686872-55686891 | Msa0363350:intron | 35.0% |
| ! | CGCCCAAACATTTTTCATTT+GGG | - | chr3_1:55686873-55686892 | Msa0363350:intron | 35.0% |
| AGAGGAAGCAAAAACACAAA+TGG | - | chr3_1:55686967-55686986 | Msa0363350:intron | 35.0% | |
| AAGCAAAAACACAAATGGAG+TGG | - | chr3_1:55686972-55686991 | Msa0363350:intron | 35.0% | |
| ATGGAGAATCGTATTGTTGA+AGG | - | chr3_1:55687014-55687033 | Msa0363350:intron | 35.0% | |
| GAATCCTTATGAATCGTACT+TGG | - | chr3_1:55687046-55687065 | Msa0363350:intron | 35.0% | |
| TCACTTGAGTTCTCCAAAAA+CGG | + | chr3_1:55687420-55687439 | None:intergenic | 35.0% | |
| ! | TCTTATCCTTCTGATTTTCG+GGG | + | chr3_1:55687565-55687584 | None:intergenic | 35.0% |
| ! | GTCTTATCCTTCTGATTTTC+GGG | + | chr3_1:55687566-55687585 | None:intergenic | 35.0% |
| ! | CGTCTTATCCTTCTGATTTT+CGG | + | chr3_1:55687567-55687586 | None:intergenic | 35.0% |
| !!! | ATTTTGACTGCAGCAAGAAA+TGG | - | chr3_1:55687721-55687740 | Msa0363350:intron | 35.0% |
| TTAAGGTCGTATATGGAACT+TGG | + | chr3_1:55687784-55687803 | None:intergenic | 35.0% | |
| TTCCATATACGACCTTAACT+TGG | - | chr3_1:55687786-55687805 | Msa0363350:intron | 35.0% | |
| TTCCAAGTTAAGGTCGTATA+TGG | + | chr3_1:55687791-55687810 | None:intergenic | 35.0% | |
| TATATGCCACATCATTTGCA+AGG | + | chr3_1:55688007-55688026 | None:intergenic | 35.0% | |
| GTGGCATATAAAATGGTTTC+AGG | - | chr3_1:55688017-55688036 | Msa0363350:intron | 35.0% | |
| AAAATTCGATGACCTTGATC+AGG | - | chr3_1:55688077-55688096 | Msa0363350:intron | 35.0% | |
| !! | CTATTGATTGGTTTGGATAC+TGG | + | chr3_1:55688233-55688252 | None:intergenic | 35.0% |
| ACTGCTCAAAGACTATTGAT+TGG | + | chr3_1:55688245-55688264 | None:intergenic | 35.0% | |
| AGACATTGTTGAAGCCTAAA+AGG | + | chr3_1:55688269-55688288 | None:intergenic | 35.0% | |
| TTCAGCCAAAAGAGATATTG+AGG | - | chr3_1:55688380-55688399 | Msa0363350:intron | 35.0% | |
| TCAGCCAAAAGAGATATTGA+GGG | - | chr3_1:55688381-55688400 | Msa0363350:intron | 35.0% | |
| GTGTGCAAAAGTAGTTAGAA+GGG | + | chr3_1:55688694-55688713 | None:intergenic | 35.0% | |
| TGTGTGCAAAAGTAGTTAGA+AGG | + | chr3_1:55688695-55688714 | None:intergenic | 35.0% | |
| !! | TCTAACTACTTTTGCACACA+TGG | - | chr3_1:55688695-55688714 | Msa0363350:five_prime_UTR | 35.0% |
| CACATGGATCAGTATACTAA+AGG | - | chr3_1:55688711-55688730 | Msa0363350:five_prime_UTR | 35.0% | |
| AACAAAGATGACAAAACAGC+TGG | - | chr3_1:55688765-55688784 | Msa0363350:five_prime_UTR | 35.0% | |
| ! | ATTCACTACCTTTTGTTACC+AGG | + | chr3_1:55688818-55688837 | None:intergenic | 35.0% |
| TGGTAACAAAAGGTAGTGAA+TGG | - | chr3_1:55688817-55688836 | Msa0363350:five_prime_UTR | 35.0% | |
| AAAGCAAATGCATCAAATGC+AGG | + | chr3_1:55688969-55688988 | None:intergenic | 35.0% | |
| !! | TTCTTTTCGAGAAGTGAGTA+TGG | + | chr3_1:55689045-55689064 | None:intergenic | 35.0% |
| ! | TATGCCAAGGAAACTTCTTT+TGG | - | chr3_1:55689085-55689104 | Msa0363350:five_prime_UTR | 35.0% |
| ! | ATGCCAAGGAAACTTCTTTT+GGG | - | chr3_1:55689086-55689105 | Msa0363350:five_prime_UTR | 35.0% |
| AATCCCAAAAGAAGTTTCCT+TGG | + | chr3_1:55689092-55689111 | None:intergenic | 35.0% | |
| AGCAAGTGACTGAATAAATG+AGG | + | chr3_1:55689208-55689227 | None:intergenic | 35.0% | |
| ATAAGGGGGAGGAAATATAA+AGG | - | chr3_1:55689315-55689334 | Msa0363350:intron | 35.0% | |
| CTTCAAGGTTGAAACACTGA+TGG | + | chr3_1:55682201-55682220 | None:intergenic | 40.0% | |
| CACTTCTTTATTGCTCATGG+TGG | + | chr3_1:55682232-55682251 | None:intergenic | 40.0% | |
| TATAAACTGCGTACCTTCAG+TGG | + | chr3_1:55682283-55682302 | None:intergenic | 40.0% | |
| CTGGAGACACATTTACTACT+TGG | + | chr3_1:55682658-55682677 | None:intergenic | 40.0% | |
| TCTCCAGAAGACATGCTAAA+GGG | - | chr3_1:55682671-55682690 | Msa0363350:CDS | 40.0% | |
| TATCCCTTTAGCATGTCTTC+TGG | + | chr3_1:55682677-55682696 | None:intergenic | 40.0% | |
| AAGTCACAAAAATGAGGAGG+AGG | - | chr3_1:55682853-55682872 | Msa0363350:CDS | 40.0% | |
| GAATGTATCATAGGAGAAGG+TGG | - | chr3_1:55682950-55682969 | Msa0363350:CDS | 40.0% | |
| AAACCAGGTAGAAGTGATTG+TGG | - | chr3_1:55683079-55683098 | Msa0363350:intron | 40.0% | |
| ACCAAAAAATTCTCTCCGGA+TGG | + | chr3_1:55683167-55683186 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr3_1:55683355-55683374 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr3_1:55683358-55683377 | None:intergenic | 40.0% | |
| GATATAGCATTGCTCTTGCT+TGG | - | chr3_1:55683432-55683451 | Msa0363350:intron | 40.0% | |
| ! | GAATATGATGGGAGGTGTAT+TGG | - | chr3_1:55683657-55683676 | Msa0363350:intron | 40.0% |
| CAAGAGCAACAACAAACCAA+TGG | - | chr3_1:55683708-55683727 | Msa0363350:intron | 40.0% | |
| CTCTTTCAGTCCTAAACCAT+TGG | + | chr3_1:55683727-55683746 | None:intergenic | 40.0% | |
| CAACAACAGGTCAATGTTTC+AGG | - | chr3_1:55683917-55683936 | Msa0363350:CDS | 40.0% | |
| !! | ACTTGAGGCCTTGTGATTTT+GGG | + | chr3_1:55683973-55683992 | None:intergenic | 40.0% |
| !! | TACTTGAGGCCTTGTGATTT+TGG | + | chr3_1:55683974-55683993 | None:intergenic | 40.0% |
| TCATGCTAATCAGTGTCTCT+TGG | - | chr3_1:55684229-55684248 | Msa0363350:intron | 40.0% | |
| CATGCTAATCAGTGTCTCTT+GGG | - | chr3_1:55684230-55684249 | Msa0363350:intron | 40.0% | |
| CTAGTAGCAAGAAGTTTGAG+AGG | + | chr3_1:55684508-55684527 | None:intergenic | 40.0% | |
| CTCTCAAACTTCTTGCTACT+AGG | - | chr3_1:55684506-55684525 | Msa0363350:intron | 40.0% | |
| !! | CATCTTGTATCCGCTTTTGA+AGG | + | chr3_1:55684539-55684558 | None:intergenic | 40.0% |
| GAAATGTTGCACACTTACAG+TGG | + | chr3_1:55684585-55684604 | None:intergenic | 40.0% | |
| TATGGGAGAGAGATAAAGTG+TGG | - | chr3_1:55685134-55685153 | Msa0363350:CDS | 40.0% | |
| !!! | ACTGTTTTTTAGTGGTGGTC+GGG | - | chr3_1:55685217-55685236 | Msa0363350:intron | 40.0% |
| CGATATTTCAAAAGGACCGA+AGG | - | chr3_1:55685470-55685489 | Msa0363350:intron | 40.0% | |
| TTCCGTTCTTCATAGGATAC+TGG | + | chr3_1:55685515-55685534 | None:intergenic | 40.0% | |
| ! | CTATCAAAAGGTATACCTGC+AGG | - | chr3_1:55685791-55685810 | Msa0363350:CDS | 40.0% |
| CGATTGCTTCATCAACGTTT+AGG | + | chr3_1:55685820-55685839 | None:intergenic | 40.0% | |
| ATTGAACATCTGACCTACCT+TGG | - | chr3_1:55686295-55686314 | Msa0363350:intron | 40.0% | |
| TGCTTTCTTGTGAGGGAAAT+TGG | + | chr3_1:55686384-55686403 | None:intergenic | 40.0% | |
| TGAGAGACATGGATAGAACA+AGG | - | chr3_1:55686423-55686442 | Msa0363350:intron | 40.0% | |
| ! | AGACATGTGGCATAGTTTTC+TGG | + | chr3_1:55686651-55686670 | None:intergenic | 40.0% |
| GTTCCCAAGTACGATTCATA+AGG | + | chr3_1:55687053-55687072 | None:intergenic | 40.0% | |
| TATGAATCGTACTTGGGAAC+CGG | - | chr3_1:55687053-55687072 | Msa0363350:intron | 40.0% | |
| ! | CTTATCCTTCTGATTTTCGG+GGG | + | chr3_1:55687564-55687583 | None:intergenic | 40.0% |
| TGCAGGAGATAACAAAGATG+AGG | - | chr3_1:55687639-55687658 | Msa0363350:intron | 40.0% | |
| ! | CAGAAGAACCATTGTTGTTG+AGG | - | chr3_1:55687843-55687862 | Msa0363350:intron | 40.0% |
| CCTTAATGCCTCAACAACAA+TGG | + | chr3_1:55687854-55687873 | None:intergenic | 40.0% | |
| ! | CCATTGTTGTTGAGGCATTA+AGG | - | chr3_1:55687851-55687870 | Msa0363350:intron | 40.0% |
| CTACCAAAAGTGATCGAGAT+TGG | - | chr3_1:55687965-55687984 | Msa0363350:intron | 40.0% | |
| ! | GTTCCAATCTCGATCACTTT+TGG | + | chr3_1:55687971-55687990 | None:intergenic | 40.0% |
| GATCGAGATTGGAACATATC+TGG | - | chr3_1:55687976-55687995 | Msa0363350:intron | 40.0% | |
| !! | ATTGGTTTGGATACTGGGTT+TGG | + | chr3_1:55688227-55688246 | None:intergenic | 40.0% |
| ! | GTCTTTGAGCAGTTCCTTTT+AGG | - | chr3_1:55688252-55688271 | Msa0363350:intron | 40.0% |
| ! | TAGGCCCTCAATATCTCTTT+TGG | + | chr3_1:55688388-55688407 | None:intergenic | 40.0% |
| TGGAGTTAAGAACTGCAGTT+GGG | + | chr3_1:55688458-55688477 | None:intergenic | 40.0% | |
| TGCAGTTCTTAACTCCACTT+GGG | - | chr3_1:55688461-55688480 | Msa0363350:intron | 40.0% | |
| !!! | GGGGGTATTAGCGTATTTTT+CGG | - | chr3_1:55688481-55688500 | Msa0363350:intron | 40.0% |
| !! | GGGGTATTAGCGTATTTTTC+GGG | - | chr3_1:55688482-55688501 | Msa0363350:intron | 40.0% |
| AAAACCAACCCAATCATGAC+TGG | - | chr3_1:55688566-55688585 | Msa0363350:intron | 40.0% | |
| AAACCAACCCAATCATGACT+GGG | - | chr3_1:55688567-55688586 | Msa0363350:intron | 40.0% | |
| AATCCAACCCAGTCATGATT+GGG | + | chr3_1:55688577-55688596 | None:intergenic | 40.0% | |
| ! | AATCATGACTGGGTTGGATT+GGG | - | chr3_1:55688577-55688596 | Msa0363350:intron | 40.0% |
| GTTCTAACTGTGAAATGCTC+TGG | + | chr3_1:55688744-55688763 | None:intergenic | 40.0% | |
| CAAGAAATCACATGAAGACC+TGG | - | chr3_1:55688797-55688816 | Msa0363350:five_prime_UTR | 40.0% | |
| CATGAAGACCTGGTAACAAA+AGG | - | chr3_1:55688807-55688826 | Msa0363350:five_prime_UTR | 40.0% | |
| TTCGAGAAGTGAGTATGGAT+AGG | + | chr3_1:55689040-55689059 | None:intergenic | 40.0% | |
| AGCGACGAACATTGCAATAA+TGG | + | chr3_1:55689132-55689151 | None:intergenic | 40.0% | |
| CTACTGCATACAAAGTCACA+GGG | + | chr3_1:55689232-55689251 | None:intergenic | 40.0% | |
| ATCACTTGTCTTTGGCACTT+TGG | + | chr3_1:55689297-55689316 | None:intergenic | 40.0% | |
| AGTGCCAAAGACAAGTGATA+AGG | - | chr3_1:55689298-55689317 | Msa0363350:intron | 40.0% | |
| GTGCCAAAGACAAGTGATAA+GGG | - | chr3_1:55689299-55689318 | Msa0363350:intron | 40.0% | |
| TGCCAAAGACAAGTGATAAG+GGG | - | chr3_1:55689300-55689319 | Msa0363350:intron | 40.0% | |
| TTATTGCTCATGGTGGTCTG+TGG | + | chr3_1:55682225-55682244 | None:intergenic | 45.0% | |
| GTCTCCAGAAGACATGCTAA+AGG | - | chr3_1:55682670-55682689 | Msa0363350:CDS | 45.0% | |
| CTACACGTGGCAGTAAATGA+TGG | - | chr3_1:55682791-55682810 | Msa0363350:CDS | 45.0% | |
| TGAATCCTCTTGATGCTGCA+AGG | + | chr3_1:55682919-55682938 | None:intergenic | 45.0% | |
| TCATAGGAGAAGGTGGTGAA+AGG | - | chr3_1:55682957-55682976 | Msa0363350:CDS | 45.0% | |
| GTATTCTTCACTGTGCCATC+CGG | - | chr3_1:55683149-55683168 | Msa0363350:intron | 45.0% | |
| !!! | GCCATCCGGAGAGAATTTTT+TGG | - | chr3_1:55683163-55683182 | Msa0363350:intron | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+TGG | + | chr3_1:55683338-55683357 | None:intergenic | 45.0% |
| CATCTCCACCCAAAATCACA+AGG | - | chr3_1:55683962-55683981 | Msa0363350:CDS | 45.0% | |
| !! | TATCCGCTTTTGAAGGCTGA+GGG | + | chr3_1:55684532-55684551 | None:intergenic | 45.0% |
| GCGGATACAAGATGATATGG+TGG | - | chr3_1:55684545-55684564 | Msa0363350:intron | 45.0% | |
| !!! | CTGTTTTTTAGTGGTGGTCG+GGG | - | chr3_1:55685218-55685237 | Msa0363350:intron | 45.0% |
| TCCTTATCTACTTCAGACCC+TGG | + | chr3_1:55686087-55686106 | None:intergenic | 45.0% | |
| CTTCAATCACAACTGCATCG+TGG | + | chr3_1:55686198-55686217 | None:intergenic | 45.0% | |
| TGAAGATCACACCGCAAATG+TGG | - | chr3_1:55686213-55686232 | Msa0363350:intron | 45.0% | |
| AATTGCATCAGCCTCTGCAA+CGG | + | chr3_1:55686246-55686265 | None:intergenic | 45.0% | |
| TTGGAGTCTGATCGTCCAAA+TGG | + | chr3_1:55686365-55686384 | None:intergenic | 45.0% | |
| GCTATGGTGCTTTCTTGTGA+GGG | + | chr3_1:55686391-55686410 | None:intergenic | 45.0% | |
| TGCTATGGTGCTTTCTTGTG+AGG | + | chr3_1:55686392-55686411 | None:intergenic | 45.0% | |
| !! | CGTTCAGAGGCATAGTTTTC+TGG | + | chr3_1:55686618-55686637 | None:intergenic | 45.0% |
| ! | ATCTATACCCTTGGCCTTTC+AGG | - | chr3_1:55686693-55686712 | Msa0363350:intron | 45.0% |
| GACACTTACCAACTCCTGAA+AGG | + | chr3_1:55686710-55686729 | None:intergenic | 45.0% | |
| ! | ACTCACATCTCCTGTTGGTT+TGG | + | chr3_1:55687081-55687100 | None:intergenic | 45.0% |
| AAACCAACAGGAGATGTGAG+TGG | - | chr3_1:55687080-55687099 | Msa0363350:intron | 45.0% | |
| TCATGATCTAATCCAAGGGG+TGG | - | chr3_1:55687909-55687928 | Msa0363350:intron | 45.0% | |
| GGACTGTTTGATCCTGATCA+AGG | + | chr3_1:55688092-55688111 | None:intergenic | 45.0% | |
| TTCGGTAGATAACTCCCAGA+GGG | - | chr3_1:55688355-55688374 | Msa0363350:intron | 45.0% | |
| !! | CTTTTGGCTGAATACCCTCT+GGG | + | chr3_1:55688372-55688391 | None:intergenic | 45.0% |
| !! | TCTTTTGGCTGAATACCCTC+TGG | + | chr3_1:55688373-55688392 | None:intergenic | 45.0% |
| !! | CTGCAGCTGAGAGTATTATG+AGG | + | chr3_1:55688419-55688438 | None:intergenic | 45.0% |
| GTTAAGAACTGCAGTTGGGA+GGG | + | chr3_1:55688454-55688473 | None:intergenic | 45.0% | |
| AGTTAAGAACTGCAGTTGGG+AGG | + | chr3_1:55688455-55688474 | None:intergenic | 45.0% | |
| GTGGAGTTAAGAACTGCAGT+TGG | + | chr3_1:55688459-55688478 | None:intergenic | 45.0% | |
| CTGCAGTTCTTAACTCCACT+TGG | - | chr3_1:55688460-55688479 | Msa0363350:intron | 45.0% | |
| GCAGTTCTTAACTCCACTTG+GGG | - | chr3_1:55688462-55688481 | Msa0363350:intron | 45.0% | |
| CAGTTCTTAACTCCACTTGG+GGG | - | chr3_1:55688463-55688482 | Msa0363350:intron | 45.0% | |
| AATACGCTAATACCCCCAAG+TGG | + | chr3_1:55688478-55688497 | None:intergenic | 45.0% | |
| CAATCCAACCCAGTCATGAT+TGG | + | chr3_1:55688578-55688597 | None:intergenic | 45.0% | |
| ! | CAATCATGACTGGGTTGGAT+TGG | - | chr3_1:55688576-55688595 | Msa0363350:intron | 45.0% |
| TGATGTAGCGAAGGAAACAC+CGG | + | chr3_1:55688889-55688908 | None:intergenic | 45.0% | |
| TACAGTGCTTGATGTAGCGA+AGG | + | chr3_1:55688898-55688917 | None:intergenic | 45.0% | |
| TGAAACAGGTGAACCAGCAT+TGG | - | chr3_1:55688935-55688954 | Msa0363350:five_prime_UTR | 45.0% | |
| !!! | ATGTTCGTCGCTTTTTGCTC+TGG | - | chr3_1:55689140-55689159 | Msa0363350:intron | 45.0% |
| GCTACTGCATACAAAGTCAC+AGG | + | chr3_1:55689233-55689252 | None:intergenic | 45.0% | |
| GCCAAAGACAAGTGATAAGG+GGG | - | chr3_1:55689301-55689320 | Msa0363350:intron | 45.0% | |
| TCCCCCTTATCACTTGTCTT+TGG | + | chr3_1:55689305-55689324 | None:intergenic | 45.0% | |
| AAAGACAAGTGATAAGGGGG+AGG | - | chr3_1:55689304-55689323 | Msa0363350:intron | 45.0% | |
| !!! | TAAATATTCATTTTTATTTT+AGG | + | chr3_1:55683537-55683556 | None:intergenic | 5.0% |
| !!! | ATATTTAATTATTTACTTTT+TGG | - | chr3_1:55683550-55683569 | Msa0363350:intron | 5.0% |
| !!! | ATCATTAATTTTTTTTTTTA+AGG | - | chr3_1:55687262-55687281 | Msa0363350:five_prime_UTR | 5.0% |
| !!! | TCATTAATTTTTTTTTTTAA+GGG | - | chr3_1:55687263-55687282 | Msa0363350:five_prime_UTR | 5.0% |
| !!! | TTTATTATTATTTTAAATCA+AGG | - | chr3_1:55687344-55687363 | Msa0363350:intron | 5.0% |
| ATGGTGGTCTGTGGTCTTCA+AGG | + | chr3_1:55682216-55682235 | None:intergenic | 50.0% | |
| TAGAGGAACAGCACTACACG+TGG | - | chr3_1:55682778-55682797 | Msa0363350:CDS | 50.0% | |
| CTTGATGCTGCAAGGTGCAA+AGG | + | chr3_1:55682911-55682930 | None:intergenic | 50.0% | |
| TTGCACCTTGCAGCATCAAG+AGG | - | chr3_1:55682911-55682930 | Msa0363350:CDS | 50.0% | |
| CCACCACAATCACTTCTACC+TGG | + | chr3_1:55683085-55683104 | None:intergenic | 50.0% | |
| CCAGGTAGAAGTGATTGTGG+TGG | - | chr3_1:55683082-55683101 | Msa0363350:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr3_1:55683345-55683364 | Msa0363350:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr3_1:55683350-55683369 | None:intergenic | 50.0% | |
| GTTGTTGCTCTCGTGACATC+TGG | + | chr3_1:55683904-55683923 | None:intergenic | 50.0% | |
| GATGTCACGAGAGCAACAAC+AGG | - | chr3_1:55683904-55683923 | Msa0363350:CDS | 50.0% | |
| !! | TGAGGCCTTGTGATTTTGGG+TGG | + | chr3_1:55683970-55683989 | None:intergenic | 50.0% |
| !! | GTATCCGCTTTTGAAGGCTG+AGG | + | chr3_1:55684533-55684552 | None:intergenic | 50.0% |
| ! | TCAACGTTTAGGGTTCCTGC+AGG | + | chr3_1:55685809-55685828 | None:intergenic | 50.0% |
| ! | GCCAGGGTCTGAAGTAGATA+AGG | - | chr3_1:55686083-55686102 | Msa0363350:intron | 50.0% |
| ACGGCATCGTACCACATTTG+CGG | + | chr3_1:55686227-55686246 | None:intergenic | 50.0% | |
| GGAAGAAGCTTGCGTTCAGA+TGG | + | chr3_1:55686597-55686616 | None:intergenic | 50.0% | |
| TGGAAGAAGCTTGCGTTCAG+AGG | + | chr3_1:55686598-55686617 | None:intergenic | 50.0% | |
| ACCAACTCCTGAAAGGCCAA+GGG | + | chr3_1:55686703-55686722 | None:intergenic | 50.0% | |
| TACCAACTCCTGAAAGGCCA+AGG | + | chr3_1:55686704-55686723 | None:intergenic | 50.0% | |
| !! | ATCTCCTGTTGGTTTGGCAC+CGG | + | chr3_1:55687075-55687094 | None:intergenic | 50.0% |
| GTTCCACTCACATCTCCTGT+TGG | + | chr3_1:55687086-55687105 | None:intergenic | 50.0% | |
| TCCTTCCCCCGAAAATCAGA+AGG | - | chr3_1:55687556-55687575 | Msa0363350:intron | 50.0% | |
| !! | TCCTTCTGATTTTCGGGGGA+AGG | + | chr3_1:55687560-55687579 | None:intergenic | 50.0% |
| TCTAATCCAAGGGGTGGATG+AGG | - | chr3_1:55687915-55687934 | Msa0363350:intron | 50.0% | |
| GTGCAGCCTTGCAAATGATG+TGG | - | chr3_1:55687998-55688017 | Msa0363350:intron | 50.0% | |
| ATACAAGAGACGACTCCCAG+AGG | - | chr3_1:55688306-55688325 | Msa0363350:intron | 50.0% | |
| ! | CTCTGGGAGTTATCTACCGA+AGG | + | chr3_1:55688356-55688375 | None:intergenic | 50.0% |
| CTTCGGTAGATAACTCCCAG+AGG | - | chr3_1:55688354-55688373 | Msa0363350:intron | 50.0% | |
| CAACCCAGTCATGATTGGGT+TGG | + | chr3_1:55688573-55688592 | None:intergenic | 50.0% | |
| CAACCCAATCATGACTGGGT+TGG | - | chr3_1:55688571-55688590 | Msa0363350:intron | 50.0% | |
| ! | GCTACATCAAGCACTGTACC+AGG | - | chr3_1:55688900-55688919 | Msa0363350:five_prime_UTR | 50.0% |
| ! | ACATCAAGCACTGTACCAGG+CGG | - | chr3_1:55688903-55688922 | Msa0363350:five_prime_UTR | 50.0% |
| ! | ACAGGTGAACCAGCATTGGA+AGG | - | chr3_1:55688939-55688958 | Msa0363350:five_prime_UTR | 50.0% |
| ! | GTGAACCAGCATTGGAAGGA+AGG | - | chr3_1:55688943-55688962 | Msa0363350:five_prime_UTR | 50.0% |
| GACACCACACACACCACTGA+AGG | - | chr3_1:55682267-55682286 | Msa0363350:three_prime_UTR | 55.0% | |
| CGTACCTTCAGTGGTGTGTG+TGG | + | chr3_1:55682274-55682293 | None:intergenic | 55.0% | |
| AGGCCCTCAGCCTTCAAAAG+CGG | - | chr3_1:55684526-55684545 | Msa0363350:intron | 55.0% | |
| ! | ACCCTTGGCCTTTCAGGAGT+TGG | - | chr3_1:55686699-55686718 | Msa0363350:intron | 55.0% |
| TCTCTTCCTCATCCACCCCT+TGG | + | chr3_1:55687924-55687943 | None:intergenic | 55.0% | |
| GAACTGCAGTTGGGAGGGAA+CGG | + | chr3_1:55688449-55688468 | None:intergenic | 55.0% | |
| GTAGTAGCAGCACTCCTTGC+CGG | - | chr3_1:55688867-55688886 | Msa0363350:five_prime_UTR | 55.0% | |
| TAGCGAAGGAAACACCGGCA+AGG | + | chr3_1:55688884-55688903 | None:intergenic | 55.0% | |
| GTTTCACTTCTGTTGCCGCC+TGG | + | chr3_1:55688921-55688940 | None:intergenic | 55.0% | |
| GGCGGCAACAGAAGTGAAAC+AGG | - | chr3_1:55688921-55688940 | Msa0363350:five_prime_UTR | 55.0% | |
| GCGAGCTTAGCTCAGCTGGT+AGG | + | chr3_1:55685280-55685299 | None:intergenic | 60.0% | |
| CATCGCGAGCTTAGCTCAGC+TGG | + | chr3_1:55685284-55685303 | None:intergenic | 60.0% | |
| CAACTGCATCGTGGCCGCAT+TGG | + | chr3_1:55686189-55686208 | None:intergenic | 60.0% | |
| GTGGTACGATGCCGTTGCAG+AGG | - | chr3_1:55686232-55686251 | Msa0363350:intron | 60.0% | |
| ! | GGAACCGGTGCCAAACCAAC+AGG | - | chr3_1:55687068-55687087 | Msa0363350:intron | 60.0% |
| GCAGGCCTTCCTTCCAATGC+TGG | + | chr3_1:55688951-55688970 | None:intergenic | 60.0% | |
| GGTGCGTGCTTACGTGCGTG+TGG | - | chr3_1:55683678-55683697 | Msa0363350:intron | 65.0% | |
| GGTGGTCGGGGTTCGAACTC+CGG | - | chr3_1:55685230-55685249 | Msa0363350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 55682191 | 55689581 | 55682191 | ID=Msa0363350;Name=Msa0363350 |
| chr3_1 | mRNA | 55682191 | 55689581 | 55682191 | ID=Msa0363350-mRNA-1;Parent=Msa0363350;Name=Msa0363350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=849|1|0.88|1|0.5|0.33|9|206|493 |
| chr3_1 | exon | 55682191 | 55682314 | 55682191 | ID=Msa0363350-mRNA-1:exon:10185;Parent=Msa0363350-mRNA-1 |
| chr3_1 | exon | 55682356 | 55683049 | 55682356 | ID=Msa0363350-mRNA-1:exon:10184;Parent=Msa0363350-mRNA-1 |
| chr3_1 | exon | 55683734 | 55684128 | 55683734 | ID=Msa0363350-mRNA-1:exon:10183;Parent=Msa0363350-mRNA-1 |
| chr3_1 | exon | 55684635 | 55684823 | 55684635 | ID=Msa0363350-mRNA-1:exon:10182;Parent=Msa0363350-mRNA-1 |
| chr3_1 | exon | 55685052 | 55685213 | 55685052 | ID=Msa0363350-mRNA-1:exon:10181;Parent=Msa0363350-mRNA-1 |
| chr3_1 | exon | 55685769 | 55685971 | 55685769 | ID=Msa0363350-mRNA-1:exon:10180;Parent=Msa0363350-mRNA-1 |
| chr3_1 | exon | 55687186 | 55687335 | 55687186 | ID=Msa0363350-mRNA-1:exon:10179;Parent=Msa0363350-mRNA-1 |
| chr3_1 | exon | 55688588 | 55689109 | 55688588 | ID=Msa0363350-mRNA-1:exon:10178;Parent=Msa0363350-mRNA-1 |
| chr3_1 | exon | 55689484 | 55689581 | 55689484 | ID=Msa0363350-mRNA-1:exon:10177;Parent=Msa0363350-mRNA-1 |
| chr3_1 | five_prime_UTR | 55689484 | 55689581 | 55689484 | ID=Msa0363350-mRNA-1:five_prime_utr;Parent=Msa0363350-mRNA-1 |
| chr3_1 | five_prime_UTR | 55688588 | 55689109 | 55688588 | ID=Msa0363350-mRNA-1:five_prime_utr;Parent=Msa0363350-mRNA-1 |
| chr3_1 | five_prime_UTR | 55687186 | 55687335 | 55687186 | ID=Msa0363350-mRNA-1:five_prime_utr;Parent=Msa0363350-mRNA-1 |
| chr3_1 | five_prime_UTR | 55685893 | 55685971 | 55685893 | ID=Msa0363350-mRNA-1:five_prime_utr;Parent=Msa0363350-mRNA-1 |
| chr3_1 | CDS | 55685769 | 55685892 | 55685769 | ID=Msa0363350-mRNA-1:cds;Parent=Msa0363350-mRNA-1 |
| chr3_1 | CDS | 55685052 | 55685213 | 55685052 | ID=Msa0363350-mRNA-1:cds;Parent=Msa0363350-mRNA-1 |
| chr3_1 | CDS | 55684635 | 55684823 | 55684635 | ID=Msa0363350-mRNA-1:cds;Parent=Msa0363350-mRNA-1 |
| chr3_1 | CDS | 55683734 | 55684128 | 55683734 | ID=Msa0363350-mRNA-1:cds;Parent=Msa0363350-mRNA-1 |
| chr3_1 | CDS | 55682438 | 55683049 | 55682438 | ID=Msa0363350-mRNA-1:cds;Parent=Msa0363350-mRNA-1 |
| chr3_1 | three_prime_UTR | 55682356 | 55682437 | 55682356 | ID=Msa0363350-mRNA-1:three_prime_utr;Parent=Msa0363350-mRNA-1 |
| chr3_1 | three_prime_UTR | 55682191 | 55682314 | 55682191 | ID=Msa0363350-mRNA-1:three_prime_utr;Parent=Msa0363350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
