Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462730 | XP_003600780.1 | 97.561 | 574 | 12 | 1 | 1 | 574 | 1 | 572 | 0.0 | 1156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462730 | sp|Q39033|PLCD2_ARATH | 68.158 | 581 | 168 | 6 | 2 | 574 | 10 | 581 | 0.0 | 819 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462730 | G7JA07 | 97.561 | 574 | 12 | 1 | 1 | 574 | 1 | 572 | 0.0 | 1156 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0086090 | Msa0462730 | 0.800843 | 1.191547e-48 | -8.615850e-47 |
| Msa0462730 | Msa0508310 | 0.872219 | 3.761505e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462730 | MtrunA17_Chr3g0112551 | 97.561 | 574 | 12 | 1 | 1 | 574 | 1 | 572 | 0.0 | 1156 |
| Msa0462730 | MtrunA17_Chr3g0113531 | 91.597 | 595 | 27 | 3 | 1 | 574 | 1 | 593 | 0.0 | 1015 |
| Msa0462730 | MtrunA17_Chr5g0437081 | 74.177 | 577 | 138 | 5 | 6 | 573 | 14 | 588 | 0.0 | 884 |
| Msa0462730 | MtrunA17_Chr5g0430181 | 61.395 | 588 | 203 | 7 | 6 | 574 | 12 | 594 | 0.0 | 730 |
| Msa0462730 | MtrunA17_Chr5g0437061 | 62.425 | 503 | 156 | 6 | 92 | 573 | 1 | 491 | 0.0 | 625 |
| Msa0462730 | MtrunA17_Chr5g0437041 | 49.667 | 600 | 258 | 8 | 6 | 573 | 19 | 606 | 0.0 | 580 |
| Msa0462730 | MtrunA17_Chr3g0113521 | 50.171 | 584 | 263 | 8 | 6 | 573 | 15 | 586 | 0.0 | 569 |
| Msa0462730 | MtrunA17_Chr3g0113471 | 50.342 | 584 | 262 | 8 | 7 | 573 | 15 | 587 | 0.0 | 564 |
| Msa0462730 | MtrunA17_Chr5g0430191 | 50.611 | 573 | 236 | 10 | 13 | 573 | 35 | 572 | 0.0 | 542 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462730 | AT3G08510.2 | 68.158 | 581 | 168 | 6 | 2 | 574 | 10 | 581 | 0.0 | 819 |
| Msa0462730 | AT3G08510.1 | 68.158 | 581 | 168 | 6 | 2 | 574 | 10 | 581 | 0.0 | 819 |
| Msa0462730 | AT3G55940.1 | 66.038 | 583 | 178 | 8 | 2 | 574 | 12 | 584 | 0.0 | 768 |
| Msa0462730 | AT3G08510.4 | 64.200 | 581 | 162 | 7 | 2 | 574 | 10 | 552 | 0.0 | 747 |
| Msa0462730 | AT3G08510.3 | 64.200 | 581 | 162 | 7 | 2 | 574 | 10 | 552 | 0.0 | 747 |
| Msa0462730 | AT2G40116.1 | 59.140 | 558 | 198 | 7 | 32 | 573 | 69 | 612 | 0.0 | 662 |
| Msa0462730 | AT5G58700.3 | 56.314 | 586 | 233 | 7 | 6 | 574 | 18 | 597 | 0.0 | 657 |
| Msa0462730 | AT5G58700.1 | 56.314 | 586 | 233 | 7 | 6 | 574 | 18 | 597 | 0.0 | 657 |
| Msa0462730 | AT5G58700.2 | 62.857 | 490 | 175 | 4 | 88 | 574 | 4 | 489 | 0.0 | 631 |
| Msa0462730 | AT5G58690.2 | 52.316 | 583 | 227 | 7 | 15 | 574 | 5 | 559 | 0.0 | 603 |
| Msa0462730 | AT5G58690.3 | 52.316 | 583 | 227 | 7 | 15 | 574 | 24 | 578 | 0.0 | 603 |
| Msa0462730 | AT5G58690.1 | 52.316 | 583 | 227 | 7 | 15 | 574 | 24 | 578 | 0.0 | 603 |
| Msa0462730 | AT5G58670.1 | 50.515 | 582 | 242 | 5 | 2 | 571 | 9 | 556 | 0.0 | 568 |
| Msa0462730 | AT4G38530.1 | 48.427 | 572 | 249 | 8 | 12 | 571 | 18 | 555 | 0.0 | 529 |
| Msa0462730 | AT3G47290.1 | 39.726 | 511 | 245 | 10 | 65 | 573 | 81 | 530 | 5.33e-119 | 362 |
| Msa0462730 | AT3G47290.2 | 39.604 | 505 | 239 | 11 | 65 | 567 | 81 | 521 | 3.80e-115 | 354 |
| Msa0462730 | AT3G47220.1 | 36.177 | 586 | 289 | 12 | 7 | 573 | 11 | 530 | 2.37e-110 | 340 |
Find 159 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATAATCCATTAAT+TGG | 0.072901 | 3_3:-61859452 | Msa0462730:CDS |
| ATAATAGTTGGTTGCCTTCT+TGG | 0.178944 | 3_3:-61858283 | Msa0462730:CDS |
| AGGATCGAAAACCTCATTAT+TGG | 0.216160 | 3_3:+61859030 | None:intergenic |
| CAAATGTTTGACGTCTATTA+AGG | 0.230837 | 3_3:-61860614 | Msa0462730:CDS |
| GCAATCGTACATGCTATTAA+AGG | 0.239109 | 3_3:-61862206 | Msa0462730:five_prime_UTR |
| CCATGCATCCACCCAATTAA+TGG | 0.240859 | 3_3:+61859440 | None:intergenic |
| TAATTAGGTCACTGTATATA+TGG | 0.245203 | 3_3:-61858858 | Msa0462730:intron |
| GTACATGCTATTAAAGGATT+TGG | 0.257484 | 3_3:-61862200 | Msa0462730:five_prime_UTR |
| TGGTTCTTTGGCAGGGTTAT+GGG | 0.259926 | 3_3:-61859141 | Msa0462730:intron |
| GGTGCTGACTTTGGCCAAAA+AGG | 0.261231 | 3_3:+61857926 | None:intergenic |
| TGTAGTCATCTGATGCATTT+TGG | 0.262746 | 3_3:+61859987 | None:intergenic |
| GTGGTTCTTTGGCAGGGTTA+TGG | 0.264327 | 3_3:-61859142 | Msa0462730:intron |
| CTTAGACGTCTCACTTTATC+AGG | 0.266369 | 3_3:+61859899 | None:intergenic |
| CCCGCTTTCTGTTCCGGAGC+TGG | 0.275180 | 3_3:-61858243 | Msa0462730:CDS |
| TTTGATGGCAAATGAGCTTT+AGG | 0.277773 | 3_3:+61859010 | None:intergenic |
| CTTATGCAGGTTGGAATTGC+TGG | 0.289356 | 3_3:-61858347 | Msa0462730:intron |
| TGAATTCCCGCTTTCTGTTC+CGG | 0.306917 | 3_3:-61858249 | Msa0462730:CDS |
| AATATTGTTGGGACCTGTTT+GGG | 0.310488 | 3_3:+61862040 | None:intergenic |
| AGGGTTATGGGAGATCTCTT+TGG | 0.311117 | 3_3:-61859129 | Msa0462730:CDS |
| GGATCGAAAACCTCATTATT+GGG | 0.335505 | 3_3:+61859031 | None:intergenic |
| GGTCATAATTCTTATCTAAC+TGG | 0.348463 | 3_3:-61860882 | Msa0462730:CDS |
| CTCTGAAGTGCTTCGATGAT+GGG | 0.355533 | 3_3:+61860828 | None:intergenic |
| CGCTTAATTGCCATTCATGC+TGG | 0.358294 | 3_3:-61859962 | Msa0462730:CDS |
| CTTCGTTGCGTCTGAATATC+CGG | 0.360784 | 3_3:-61860584 | Msa0462730:CDS |
| GAGTTATTGAATTGGATATA+TGG | 0.361839 | 3_3:-61860797 | Msa0462730:CDS |
| CCACCTTACTCCTGATCTTC+AGG | 0.370917 | 3_3:-61860542 | Msa0462730:CDS |
| AAATATTGTTGGGACCTGTT+TGG | 0.371843 | 3_3:+61862039 | None:intergenic |
| TAGATGGTTACTCAAACATT+TGG | 0.373406 | 3_3:-61860396 | Msa0462730:CDS |
| TCACAGAAGGGAAAGCCTTT+AGG | 0.380419 | 3_3:-61860237 | Msa0462730:CDS |
| ATGTCTGAGAAGGATGATTT+TGG | 0.381957 | 3_3:-61858188 | Msa0462730:CDS |
| GGAGGCACCGCCGGAGATAA+AGG | 0.382295 | 3_3:-61861845 | Msa0462730:CDS |
| CATTCCACTATTCCACCTTT+AGG | 0.387588 | 3_3:+61859935 | None:intergenic |
| GCCACTTTGGCCTGAAGATC+AGG | 0.391390 | 3_3:+61860532 | None:intergenic |
| TATATGGCCAAATGACTCTA+AGG | 0.397917 | 3_3:-61860781 | Msa0462730:CDS |
| TTTGGGACCCACGTTGGAAA+TGG | 0.404363 | 3_3:+61862057 | None:intergenic |
| TAAAATTCAATGAAATACTA+AGG | 0.405027 | 3_3:+61862157 | None:intergenic |
| ACATCATCCTTAGAGTCATT+TGG | 0.405986 | 3_3:+61860774 | None:intergenic |
| TTTAGGTGATGAAGAAGCTT+GGG | 0.407451 | 3_3:-61860220 | Msa0462730:CDS |
| GAAATGGCACATGGCATCCT+TGG | 0.421287 | 3_3:+61862073 | None:intergenic |
| TCTCTGAAGTGCTTCGATGA+TGG | 0.421908 | 3_3:+61860827 | None:intergenic |
| ACGAGTACAAATATGTGTTA+TGG | 0.424472 | 3_3:+61857885 | None:intergenic |
| AGGTGTTAGAGTTATTGAAT+TGG | 0.437110 | 3_3:-61860805 | Msa0462730:CDS |
| TTCCAACGTGGGTCCCAAAC+AGG | 0.438218 | 3_3:-61862053 | Msa0462730:five_prime_UTR |
| ACCTCCCCACTTGAGATACT+TGG | 0.439420 | 3_3:-61857972 | Msa0462730:intron |
| TCTTCTAGTGTTATTACAAC+CGG | 0.444726 | 3_3:+61860565 | None:intergenic |
| CATACCCTTGCATAGAAGTC+TGG | 0.448430 | 3_3:+61858782 | None:intergenic |
| TCTCCTTCGCGGGAATGTAA+TGG | 0.452778 | 3_3:+61858113 | None:intergenic |
| AATTCTGAAGAAATATTGTT+GGG | 0.452852 | 3_3:+61862029 | None:intergenic |
| GATGATGTTGATGTCCTTCA+TGG | 0.454017 | 3_3:-61860759 | Msa0462730:CDS |
| CAAATTATAATCCATTAATT+GGG | 0.455647 | 3_3:-61859451 | Msa0462730:CDS |
| ATGCGAAGCAGCGCCAGCTC+CGG | 0.456222 | 3_3:+61858230 | None:intergenic |
| CATATGGAAAAGAAATTGTC+AGG | 0.456553 | 3_3:-61859841 | Msa0462730:intron |
| AGATTCCGATGAAGCGGAAA+AGG | 0.459147 | 3_3:-61860014 | Msa0462730:CDS |
| TTTAGGCTTCCCAGCATGAA+TGG | 0.462118 | 3_3:+61859952 | None:intergenic |
| CCTTGAAGCTAAAGAAGAAA+AGG | 0.464912 | 3_3:-61860271 | Msa0462730:CDS |
| AAATCATGCTTGGAAAGTTA+AGG | 0.464924 | 3_3:+61857816 | None:intergenic |
| AAGGTACTCCTTAGGCGGCT+TGG | 0.465613 | 3_3:+61860290 | None:intergenic |
| GAAAAGGCTGCTGAAACATA+TGG | 0.467059 | 3_3:-61859857 | Msa0462730:CDS |
| CTAACTAACCTGAGCCACTT+TGG | 0.472125 | 3_3:+61860519 | None:intergenic |
| ATAGTACCGCCTCTCAAACT+AGG | 0.474142 | 3_3:+61860186 | None:intergenic |
| GAGGTAATGCGTGTACCTTT+CGG | 0.479808 | 3_3:+61859476 | None:intergenic |
| TATCATCGTTACTCCGATGA+AGG | 0.484028 | 3_3:-61861817 | Msa0462730:CDS |
| AGCTAAAGAAGAAAAGGAAA+AGG | 0.484145 | 3_3:-61860265 | Msa0462730:CDS |
| AACAAAACCGCATCCTCCAT+TGG | 0.486065 | 3_3:+61859084 | None:intergenic |
| CCATTAATTGGGTGGATGCA+TGG | 0.487420 | 3_3:-61859440 | Msa0462730:CDS |
| AAATTCTGAAGAAATATTGT+TGG | 0.489349 | 3_3:+61862028 | None:intergenic |
| TCTTCAGGCCAAAGTGGCTC+AGG | 0.489930 | 3_3:-61860527 | Msa0462730:intron |
| TCACATTATTACATATTCAC+TGG | 0.491218 | 3_3:-61860903 | Msa0462730:CDS |
| CAAAGTCAACAGATAATAGT+TGG | 0.492685 | 3_3:-61858295 | Msa0462730:CDS |
| AATTAGGTCACTGTATATAT+GGG | 0.492839 | 3_3:-61858857 | Msa0462730:intron |
| GATGGTTGCATTTAACATGC+AGG | 0.494100 | 3_3:-61859411 | Msa0462730:intron |
| CAAGCTTCTTCATCACCTAA+AGG | 0.494465 | 3_3:+61860222 | None:intergenic |
| TTGGTTGCCTTCTTGGAATG+AGG | 0.497276 | 3_3:-61858276 | Msa0462730:CDS |
| CTTTAGGTGATGAAGAAGCT+TGG | 0.501759 | 3_3:-61860221 | Msa0462730:CDS |
| TAAAGAAGAAAAGGAAAAGG+AGG | 0.506940 | 3_3:-61860262 | Msa0462730:CDS |
| ATGCAAGATGGTGCTGACTT+TGG | 0.509067 | 3_3:+61857917 | None:intergenic |
| TGTCGATGAAGATGATCTTA+AGG | 0.513054 | 3_3:-61860044 | Msa0462730:CDS |
| GAAAACTGGTCCCAATAATG+AGG | 0.515061 | 3_3:-61859041 | Msa0462730:CDS |
| TCCTTTGAGGTTTCTGAGGT+AGG | 0.515273 | 3_3:+61860357 | None:intergenic |
| CGGTACTATAGCTGATTACA+AGG | 0.516593 | 3_3:-61860172 | Msa0462730:intron |
| GTTGTATTTATCTCCTTCGC+GGG | 0.517351 | 3_3:+61858103 | None:intergenic |
| ATCGTTACTCCGATGAAGGC+GGG | 0.518193 | 3_3:-61861813 | Msa0462730:CDS |
| ATCGGAGACGGAGGCACCGC+CGG | 0.519846 | 3_3:-61861854 | Msa0462730:CDS |
| CAAGGAATGTTTAAAGCCAA+TGG | 0.521167 | 3_3:-61859100 | Msa0462730:CDS |
| GAAGCCTAAAGGTGGAATAG+TGG | 0.523615 | 3_3:-61859939 | Msa0462730:CDS |
| TTAGCTTCAAGGTACTCCTT+AGG | 0.524662 | 3_3:+61860282 | None:intergenic |
| TCTGAAGTGCTTCGATGATG+GGG | 0.528251 | 3_3:+61860829 | None:intergenic |
| AAGATCTCCACGATCAATGA+TGG | 0.528390 | 3_3:+61861711 | None:intergenic |
| TGGCCTGAAGATCAGGAGTA+AGG | 0.530572 | 3_3:+61860539 | None:intergenic |
| TGTCATGATCCCGCCTTCAT+CGG | 0.531322 | 3_3:+61861804 | None:intergenic |
| GCTTAATTGCCATTCATGCT+GGG | 0.532116 | 3_3:-61859961 | Msa0462730:CDS |
| CATATCAACCAAGCCGCCTA+AGG | 0.532591 | 3_3:-61860298 | Msa0462730:CDS |
| TGATAAAGTTCCTTTATCTC+CGG | 0.533476 | 3_3:+61861835 | None:intergenic |
| TGTTGTATTTATCTCCTTCG+CGG | 0.535824 | 3_3:+61858102 | None:intergenic |
| ATTATAATCCATTAATTGGG+TGG | 0.536189 | 3_3:-61859448 | Msa0462730:CDS |
| AGGTGAAAGAAATTCCTTTG+AGG | 0.539167 | 3_3:+61860344 | None:intergenic |
| GGAAAAGGAGGAATCACAGA+AGG | 0.541089 | 3_3:-61860250 | Msa0462730:CDS |
| AAAACACAGCGTATCGGAGA+CGG | 0.544068 | 3_3:-61861866 | Msa0462730:CDS |
| TTTAAAGCCAATGGAGGATG+CGG | 0.547215 | 3_3:-61859091 | Msa0462730:CDS |
| CATGACAATAGATAATAAAG+TGG | 0.548639 | 3_3:-61857845 | Msa0462730:three_prime_UTR |
| ATGTTACTTCATTCAATCCA+AGG | 0.549197 | 3_3:-61862090 | Msa0462730:five_prime_UTR |
| GCCAGCTCCGGAACAGAAAG+CGG | 0.549635 | 3_3:+61858242 | None:intergenic |
| ATTCATGCTGGGAAGCCTAA+AGG | 0.550977 | 3_3:-61859950 | Msa0462730:CDS |
| AAGCGAGTCACAGCTCGAAA+AGG | 0.551984 | 3_3:-61859873 | Msa0462730:CDS |
| CCAGCTCCGGAACAGAAAGC+GGG | 0.556338 | 3_3:+61858243 | None:intergenic |
| CTTCAATCAGAAAGCTTCTG+AGG | 0.557081 | 3_3:+61861773 | None:intergenic |
| TAGTACCGCCTCTCAAACTA+GGG | 0.558608 | 3_3:+61860187 | None:intergenic |
| TGAAGATGATCTTAAGGAGG+AGG | 0.558834 | 3_3:-61860038 | Msa0462730:CDS |
| ACAATGGTAAACTCATATCT+TGG | 0.558961 | 3_3:+61860925 | None:intergenic |
| CGGATATTCAGACGCAACGA+AGG | 0.561402 | 3_3:+61860585 | None:intergenic |
| TAATGGATTATAATTTGATG+AGG | 0.561590 | 3_3:+61859457 | None:intergenic |
| GTGGATGCATGGAGCTCAGA+TGG | 0.561990 | 3_3:-61859429 | Msa0462730:CDS |
| ACCCCAGTGGAAGGTAAAAG+AGG | 0.562878 | 3_3:+61861643 | None:intergenic |
| TCCTGATCTTCAGGCCAAAG+TGG | 0.568046 | 3_3:-61860533 | Msa0462730:CDS |
| CATCGTTACTCCGATGAAGG+CGG | 0.573076 | 3_3:-61861814 | Msa0462730:CDS |
| CCTGTGTGGGAACTAAGAAA+CGG | 0.577952 | 3_3:-61858149 | Msa0462730:CDS |
| ATCTCCAGACTTCTATGCAA+GGG | 0.579812 | 3_3:-61858786 | Msa0462730:intron |
| GCTTCAAGGTACTCCTTAGG+CGG | 0.582171 | 3_3:+61860285 | None:intergenic |
| AGATCTCTTTGGTTGATGCA+AGG | 0.584104 | 3_3:-61859118 | Msa0462730:CDS |
| CTGAAGTGCTTCGATGATGG+GGG | 0.585163 | 3_3:+61860830 | None:intergenic |
| GTCACTGTATATATGGGAGA+AGG | 0.587116 | 3_3:-61858851 | Msa0462730:CDS |
| TCAAATACCTCATTCCAAGA+AGG | 0.587279 | 3_3:+61858269 | None:intergenic |
| CATCTCCAGACTTCTATGCA+AGG | 0.588070 | 3_3:-61858787 | Msa0462730:CDS |
| AAGAGGATTACCCCAGTGGA+AGG | 0.591185 | 3_3:+61861634 | None:intergenic |
| GACCTGTTTGGGACCCACGT+TGG | 0.592592 | 3_3:+61862051 | None:intergenic |
| GGAGGAAGATTCCGATGAAG+CGG | 0.594226 | 3_3:-61860020 | Msa0462730:CDS |
| GTTCCATTACATTCCCGCGA+AGG | 0.594715 | 3_3:-61858116 | Msa0462730:CDS |
| AAATTCCTTTGAGGTTTCTG+AGG | 0.594965 | 3_3:+61860353 | None:intergenic |
| GGTAAACTTACATTCCATGA+AGG | 0.597062 | 3_3:+61860745 | None:intergenic |
| TTCTATCTTTAGCAAAACAG+TGG | 0.603639 | 3_3:-61860067 | Msa0462730:intron |
| GAAAAGGAGGAATCACAGAA+GGG | 0.605582 | 3_3:-61860249 | Msa0462730:CDS |
| CGATGAAGATGATCTTAAGG+AGG | 0.606898 | 3_3:-61860041 | Msa0462730:CDS |
| AAAGAAGTCCCTAGTTTGAG+AGG | 0.608524 | 3_3:-61860195 | Msa0462730:CDS |
| AAACATTTGATAAGTGCCAC+AGG | 0.609405 | 3_3:+61860628 | None:intergenic |
| CCATGTGCCATTTCCAACGT+GGG | 0.610730 | 3_3:-61862064 | Msa0462730:five_prime_UTR |
| TCCTACCTCAGAAACCTCAA+AGG | 0.616696 | 3_3:-61860358 | Msa0462730:CDS |
| TAAAGTTCCTTTATCTCCGG+CGG | 0.616964 | 3_3:+61861838 | None:intergenic |
| AATATGTAATAATGTGACAA+TGG | 0.622860 | 3_3:+61860909 | None:intergenic |
| CCGTTTCTTAGTTCCCACAC+AGG | 0.623175 | 3_3:+61858149 | None:intergenic |
| GCCATGTGCCATTTCCAACG+TGG | 0.625456 | 3_3:-61862065 | Msa0462730:five_prime_UTR |
| CCCACGTTGGAAATGGCACA+TGG | 0.625697 | 3_3:+61862064 | None:intergenic |
| TGGAACTTAAAGATGCAAGA+TGG | 0.627322 | 3_3:+61857905 | None:intergenic |
| CTGTATATATGGGAGAAGGA+TGG | 0.631132 | 3_3:-61858847 | Msa0462730:CDS |
| ACAAACATGCTTACCTGTGT+GGG | 0.631770 | 3_3:-61858162 | Msa0462730:CDS |
| TGAATATGACATGTCTGAGA+AGG | 0.639315 | 3_3:-61858198 | Msa0462730:CDS |
| CAGGACATTGACGACTCCTG+TGG | 0.642402 | 3_3:-61860644 | Msa0462730:CDS |
| ACACAAGCCATCATTGATCG+TGG | 0.646149 | 3_3:-61861718 | Msa0462730:CDS |
| TTAGGTGATGAAGAAGCTTG+GGG | 0.654802 | 3_3:-61860219 | Msa0462730:CDS |
| AATAGTGGAATGTCTCAAAG+TGG | 0.664523 | 3_3:-61859924 | Msa0462730:CDS |
| GACAAACATGCTTACCTGTG+TGG | 0.665048 | 3_3:-61858163 | Msa0462730:CDS |
| CCAGTGGAAGGTAAAAGAGG+AGG | 0.668421 | 3_3:+61861646 | None:intergenic |
| CCTGAAGATCAGGAGTAAGG+TGG | 0.674793 | 3_3:+61860542 | None:intergenic |
| GGAATGTTTAAAGCCAATGG+AGG | 0.677096 | 3_3:-61859097 | Msa0462730:CDS |
| CATGCTGGGAAGCCTAAAGG+TGG | 0.677747 | 3_3:-61859947 | Msa0462730:CDS |
| ATATTGCGAGTGTATCCGAA+AGG | 0.679225 | 3_3:-61859491 | Msa0462730:CDS |
| GAAGTCCCTAGTTTGAGAGG+CGG | 0.688180 | 3_3:-61860192 | Msa0462730:CDS |
| ACACAGCGTATCGGAGACGG+AGG | 0.693737 | 3_3:-61861863 | Msa0462730:CDS |
| GTAAAAGAGGATTACCCCAG+TGG | 0.701192 | 3_3:+61861630 | None:intergenic |
| ATCATCGAAGCACTTCAGAG+AGG | 0.734048 | 3_3:-61860825 | Msa0462730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGATAAATCAATTTT+GGG | + | chr3_3:61858859-61858878 | None:intergenic | 10.0% |
| !!! | ATTTTTAGATAAATCAATTT+TGG | + | chr3_3:61858860-61858879 | None:intergenic | 10.0% |
| !! | ATAAATTATTTCAATAACAA+AGG | + | chr3_3:61861497-61861516 | None:intergenic | 10.0% |
| !! | TAAAATTCAATGAAATACTA+AGG | + | chr3_3:61857896-61857915 | None:intergenic | 15.0% |
| !!! | TTTTAGATAAATCAATTTTG+GGG | + | chr3_3:61858858-61858877 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCCATTAAT+TGG | - | chr3_3:61860598-61860617 | Msa0462730:CDS | 15.0% |
| !! | CAAATTATAATCCATTAATT+GGG | - | chr3_3:61860599-61860618 | Msa0462730:CDS | 15.0% |
| !!! | TAAGATTTAAGATGATTTAT+GGG | - | chr3_3:61861292-61861311 | Msa0462730:intron | 15.0% |
| !! | TCAAATAAAATAATTCATAC+AGG | + | chr3_3:61861318-61861337 | None:intergenic | 15.0% |
| !!! | GTCATGAGTTAATTATTTTT+TGG | + | chr3_3:61857935-61857954 | None:intergenic | 20.0% |
| !!! | AATTCTGAAGAAATATTGTT+GGG | + | chr3_3:61858024-61858043 | None:intergenic | 20.0% |
| !!! | AAATTCTGAAGAAATATTGT+TGG | + | chr3_3:61858025-61858044 | None:intergenic | 20.0% |
| !!! | ATTTAATTTAAAAGCCAACA+AGG | + | chr3_3:61858445-61858464 | None:intergenic | 20.0% |
| !! | TCAACTCTATAAATTATGTT+TGG | + | chr3_3:61858884-61858903 | None:intergenic | 20.0% |
| !!! | GTAATTTTTATGAACTATGT+TGG | - | chr3_3:61859045-61859064 | Msa0462730:CDS | 20.0% |
| !! | AATATGTAATAATGTGACAA+TGG | + | chr3_3:61859144-61859163 | None:intergenic | 20.0% |
| !! | AATGTTGTATATAAATTGCA+AGG | - | chr3_3:61859915-61859934 | Msa0462730:CDS | 20.0% |
| !! | TTTAATCCAGTAACAATAAA+AGG | + | chr3_3:61860320-61860339 | None:intergenic | 20.0% |
| !!! | CATTTATATTCAATTAGCTT+TGG | - | chr3_3:61860447-61860466 | Msa0462730:intron | 20.0% |
| !!! | TAATGGATTATAATTTGATG+AGG | + | chr3_3:61860596-61860615 | None:intergenic | 20.0% |
| !!! | ATGATATATTATTTTTGCTG+TGG | - | chr3_3:61860885-61860904 | Msa0462730:CDS | 20.0% |
| !!! | TGATATATTATTTTTGCTGT+GGG | - | chr3_3:61860886-61860905 | Msa0462730:CDS | 20.0% |
| !!! | CTAAGATTTAAGATGATTTA+TGG | - | chr3_3:61861291-61861310 | Msa0462730:intron | 20.0% |
| !! | CGAAGAATTAGAAAAATATA+TGG | + | chr3_3:61861603-61861622 | None:intergenic | 20.0% |
| !!! | TTTAACTTAAATTCCCTTTT+TGG | - | chr3_3:61862110-61862129 | Msa0462730:five_prime_UTR | 20.0% |
| !! | GAATTTTCTGTGCTTATTAT+AGG | - | chr3_3:61858039-61858058 | Msa0462730:intron | 25.0% |
| !!! | CTCACTTTTAAGTGTATATT+TGG | - | chr3_3:61858647-61858666 | Msa0462730:intron | 25.0% |
| ! | TCACATTATTACATATTCAC+TGG | - | chr3_3:61859147-61859166 | Msa0462730:intron | 25.0% |
| ! | GAGTTATTGAATTGGATATA+TGG | - | chr3_3:61859253-61859272 | Msa0462730:intron | 25.0% |
| ! | TGTTGGAGATATAATTCAAA+CGG | + | chr3_3:61859329-61859348 | None:intergenic | 25.0% |
| ! | GTTGTCATTAGTAAAATACA+TGG | + | chr3_3:61859369-61859388 | None:intergenic | 25.0% |
| !! | AACCATCTAAAATTTGAACA+GGG | + | chr3_3:61859643-61859662 | None:intergenic | 25.0% |
| !! | TAACCATCTAAAATTTGAAC+AGG | + | chr3_3:61859644-61859663 | None:intergenic | 25.0% |
| !!! | ATCCTTTTTTTAAGTGAATC+AGG | + | chr3_3:61859729-61859748 | None:intergenic | 25.0% |
| ! | AATCTCACATACAAAATTAG+AGG | + | chr3_3:61859942-61859961 | None:intergenic | 25.0% |
| !! | TCTAATTTTGTATGTGAGAT+TGG | - | chr3_3:61859941-61859960 | Msa0462730:CDS | 25.0% |
| !! | TATAATTTTACCTGTTGCAT+TGG | - | chr3_3:61860281-61860300 | Msa0462730:CDS | 25.0% |
| !! | TTCAATCCTTTTATTGTTAC+TGG | - | chr3_3:61860311-61860330 | Msa0462730:CDS | 25.0% |
| ! | TAAATATTTGTCCTTGACAA+TGG | - | chr3_3:61860351-61860370 | Msa0462730:CDS | 25.0% |
| ! | ATTATAATCCATTAATTGGG+TGG | - | chr3_3:61860602-61860621 | Msa0462730:CDS | 25.0% |
| !! | TTTTGTCTTGAATTTCTCTT+TGG | - | chr3_3:61860789-61860808 | Msa0462730:CDS | 25.0% |
| !! | TGCTTTTCTTACTCTTAATT+AGG | - | chr3_3:61861177-61861196 | Msa0462730:intron | 25.0% |
| ! | TAATTAGGTCACTGTATATA+TGG | - | chr3_3:61861192-61861211 | Msa0462730:intron | 25.0% |
| ! | AATTAGGTCACTGTATATAT+GGG | - | chr3_3:61861193-61861212 | Msa0462730:intron | 25.0% |
| ! | AAATATATGGATGCTATAAC+TGG | + | chr3_3:61861590-61861609 | None:intergenic | 25.0% |
| ! | TAATTGATAAACTCTTATGC+AGG | - | chr3_3:61861690-61861709 | Msa0462730:CDS | 25.0% |
| !! | TTTTCATACCAGTATCAAAA+GGG | + | chr3_3:61861732-61861751 | None:intergenic | 25.0% |
| !! | TTTTTCATACCAGTATCAAA+AGG | + | chr3_3:61861733-61861752 | None:intergenic | 25.0% |
| ! | CATCTGATACAAGTTAAAAT+AGG | - | chr3_3:61861999-61862018 | Msa0462730:five_prime_UTR | 25.0% |
| ! | CATGACAATAGATAATAAAG+TGG | - | chr3_3:61862205-61862224 | Msa0462730:five_prime_UTR | 25.0% |
| GTACATGCTATTAAAGGATT+TGG | - | chr3_3:61857850-61857869 | Msa0462730:three_prime_UTR | 30.0% | |
| ! | ATGTTACTTCATTCAATCCA+AGG | - | chr3_3:61857960-61857979 | Msa0462730:three_prime_UTR | 30.0% |
| TGATAAAGTTCCTTTATCTC+CGG | + | chr3_3:61858218-61858237 | None:intergenic | 30.0% | |
| ! | AGTGACAAAATTGGTTTAAG+AGG | - | chr3_3:61858521-61858540 | Msa0462730:intron | 30.0% |
| CATGTAAAGTGGTTTATGTT+TGG | + | chr3_3:61858619-61858638 | None:intergenic | 30.0% | |
| GAGTTACATTACATGTAAAG+TGG | + | chr3_3:61858630-61858649 | None:intergenic | 30.0% | |
| ! | TAGATAAAGTGCTTTGTGTT+TGG | - | chr3_3:61858740-61858759 | Msa0462730:intron | 30.0% |
| AATCTGTGTGTTAGAATCAA+AGG | - | chr3_3:61858794-61858813 | Msa0462730:CDS | 30.0% | |
| AATCAAAGGCTACAAATAGT+AGG | - | chr3_3:61858808-61858827 | Msa0462730:CDS | 30.0% | |
| !! | TTATAGAGTTGAGTTGCTTT+TGG | - | chr3_3:61858892-61858911 | Msa0462730:intron | 30.0% |
| ACAATGGTAAACTCATATCT+TGG | + | chr3_3:61859128-61859147 | None:intergenic | 30.0% | |
| GGTCATAATTCTTATCTAAC+TGG | - | chr3_3:61859168-61859187 | Msa0462730:intron | 30.0% | |
| AGGTGTTAGAGTTATTGAAT+TGG | - | chr3_3:61859245-61859264 | Msa0462730:intron | 30.0% | |
| ATGAATTCTCGTCAAATTGT+TGG | + | chr3_3:61859346-61859365 | None:intergenic | 30.0% | |
| ACAAAATGATGCAATCTTAC+AGG | - | chr3_3:61859387-61859406 | Msa0462730:intron | 30.0% | |
| CAAATGTTTGACGTCTATTA+AGG | - | chr3_3:61859436-61859455 | Msa0462730:CDS | 30.0% | |
| ! | TCTTCTAGTGTTATTACAAC+CGG | + | chr3_3:61859488-61859507 | None:intergenic | 30.0% |
| TAGATGGTTACTCAAACATT+TGG | - | chr3_3:61859654-61859673 | Msa0462730:intron | 30.0% | |
| CACCTGATTCACTTAAAAAA+AGG | - | chr3_3:61859724-61859743 | Msa0462730:intron | 30.0% | |
| AGCTAAAGAAGAAAAGGAAA+AGG | - | chr3_3:61859785-61859804 | Msa0462730:intron | 30.0% | |
| TAAAGAAGAAAAGGAAAAGG+AGG | - | chr3_3:61859788-61859807 | Msa0462730:intron | 30.0% | |
| ! | ATTTTGTATGTGAGATTGGT+TGG | - | chr3_3:61859945-61859964 | Msa0462730:CDS | 30.0% |
| TTCTATCTTTAGCAAAACAG+TGG | - | chr3_3:61859983-61860002 | Msa0462730:CDS | 30.0% | |
| CATATGGAAAAGAAATTGTC+AGG | - | chr3_3:61860209-61860228 | Msa0462730:CDS | 30.0% | |
| TATATAACAAGAAACCTGTG+AGG | - | chr3_3:61860691-61860710 | Msa0462730:intron | 30.0% | |
| ACGGCTACTAATTGAAAATT+TGG | - | chr3_3:61860720-61860739 | Msa0462730:intron | 30.0% | |
| CGGCTACTAATTGAAAATTT+GGG | - | chr3_3:61860721-61860740 | Msa0462730:intron | 30.0% | |
| GGCTACTAATTGAAAATTTG+GGG | - | chr3_3:61860722-61860741 | Msa0462730:intron | 30.0% | |
| !!! | TATATTATTTTTGCTGTGGG+TGG | - | chr3_3:61860889-61860908 | Msa0462730:CDS | 30.0% |
| ! | CCAGTTTTCAATAGAAAATC+AGG | + | chr3_3:61860998-61861017 | None:intergenic | 30.0% |
| ! | CCTGATTTTCTATTGAAAAC+TGG | - | chr3_3:61860995-61861014 | Msa0462730:intron | 30.0% |
| ! | ACCTTCAAAGTAGTTTTTGA+TGG | + | chr3_3:61861058-61861077 | None:intergenic | 30.0% |
| ! | TTTGAGTAGTGACTTTTACA+AGG | - | chr3_3:61861099-61861118 | Msa0462730:intron | 30.0% |
| ! | TTGAGTAGTGACTTTTACAA+GGG | - | chr3_3:61861100-61861119 | Msa0462730:intron | 30.0% |
| CTCTAGACTTGATTATAACA+AGG | - | chr3_3:61861151-61861170 | Msa0462730:intron | 30.0% | |
| ATTAAGCTGAAAACAGCTTA+TGG | + | chr3_3:61861409-61861428 | None:intergenic | 30.0% | |
| TTCCATAAGCTCTCTAATAT+AGG | - | chr3_3:61861428-61861447 | Msa0462730:intron | 30.0% | |
| AACCTATATTAGAGAGCTTA+TGG | + | chr3_3:61861433-61861452 | None:intergenic | 30.0% | |
| ATAACTGGAACATAACTGTT+TGG | + | chr3_3:61861575-61861594 | None:intergenic | 30.0% | |
| AATAAGTGATAACTTCCCTT+CGG | - | chr3_3:61861647-61861666 | Msa0462730:CDS | 30.0% | |
| CAAAGTCAACAGATAATAGT+TGG | - | chr3_3:61861755-61861774 | Msa0462730:CDS | 30.0% | |
| !!! | AATAGGTGTTGTTGCTTTTA+AGG | - | chr3_3:61862016-61862035 | Msa0462730:five_prime_UTR | 30.0% |
| !! | ATAGGGTGTATTTTTGCAAA+TGG | + | chr3_3:61862053-61862072 | None:intergenic | 30.0% |
| ACGAGTACAAATATGTGTTA+TGG | + | chr3_3:61862168-61862187 | None:intergenic | 30.0% | |
| GCAATCGTACATGCTATTAA+AGG | - | chr3_3:61857844-61857863 | Msa0462730:three_prime_UTR | 35.0% | |
| AATATTGTTGGGACCTGTTT+GGG | + | chr3_3:61858013-61858032 | None:intergenic | 35.0% | |
| AAATATTGTTGGGACCTGTT+TGG | + | chr3_3:61858014-61858033 | None:intergenic | 35.0% | |
| ! | GTAATCCTCTTTTACCTTGT+TGG | - | chr3_3:61858428-61858447 | Msa0462730:intron | 35.0% |
| AAAAGCCAACAAGGTAAAAG+AGG | + | chr3_3:61858436-61858455 | None:intergenic | 35.0% | |
| ! | CAATTTTGTCACTCGAAACA+AGG | + | chr3_3:61858514-61858533 | None:intergenic | 35.0% |
| ! | CTTGTTTCGAGTGACAAAAT+TGG | - | chr3_3:61858512-61858531 | Msa0462730:intron | 35.0% |
| !! | GTGTATATTTGGTTCTGCAT+TGG | - | chr3_3:61858658-61858677 | Msa0462730:intron | 35.0% |
| !! | GCACTTGAAAAGCACTTATA+AGG | - | chr3_3:61858914-61858933 | Msa0462730:intron | 35.0% |
| ACTATGTTGGTGTGTGATAA+TGG | - | chr3_3:61859058-61859077 | Msa0462730:CDS | 35.0% | |
| ! | CTGTTTCTTTGTGTGATTTC+AGG | - | chr3_3:61859098-61859117 | Msa0462730:CDS | 35.0% |
| TATATGGCCAAATGACTCTA+AGG | - | chr3_3:61859269-61859288 | Msa0462730:intron | 35.0% | |
| ACATCATCCTTAGAGTCATT+TGG | + | chr3_3:61859279-61859298 | None:intergenic | 35.0% | |
| GGTAAACTTACATTCCATGA+AGG | + | chr3_3:61859308-61859327 | None:intergenic | 35.0% | |
| AAACATTTGATAAGTGCCAC+AGG | + | chr3_3:61859425-61859444 | None:intergenic | 35.0% | |
| ! | AGCCCTGTTCAAATTTTAGA+TGG | - | chr3_3:61859638-61859657 | Msa0462730:intron | 35.0% |
| !! | AAATTCCTTTGAGGTTTCTG+AGG | + | chr3_3:61859700-61859719 | None:intergenic | 35.0% |
| AGGTGAAAGAAATTCCTTTG+AGG | + | chr3_3:61859709-61859728 | None:intergenic | 35.0% | |
| !! | CCTTTTCTTCTTTAGCTTCA+AGG | + | chr3_3:61859782-61859801 | None:intergenic | 35.0% |
| CCTTGAAGCTAAAGAAGAAA+AGG | - | chr3_3:61859779-61859798 | Msa0462730:intron | 35.0% | |
| TTTAGGTGATGAAGAAGCTT+GGG | - | chr3_3:61859830-61859849 | Msa0462730:intron | 35.0% | |
| TGTCGATGAAGATGATCTTA+AGG | - | chr3_3:61860006-61860025 | Msa0462730:CDS | 35.0% | |
| ! | TGTAGTCATCTGATGCATTT+TGG | + | chr3_3:61860066-61860085 | None:intergenic | 35.0% |
| ! | AATAGTGGAATGTCTCAAAG+TGG | - | chr3_3:61860126-61860145 | Msa0462730:intron | 35.0% |
| TTCTTAGATGGCATATCGAA+CGG | - | chr3_3:61860388-61860407 | Msa0462730:CDS | 35.0% | |
| TCTTGAATTTCTCTTTGGTG+AGG | - | chr3_3:61860794-61860813 | Msa0462730:CDS | 35.0% | |
| AATGTCTTGATACAGCTGAA+AGG | + | chr3_3:61860842-61860861 | None:intergenic | 35.0% | |
| ! | CAAGGAATGTTTAAAGCCAA+TGG | - | chr3_3:61860950-61860969 | Msa0462730:intron | 35.0% |
| GGATCGAAAACCTCATTATT+GGG | + | chr3_3:61861022-61861041 | None:intergenic | 35.0% | |
| AGGATCGAAAACCTCATTAT+TGG | + | chr3_3:61861023-61861042 | None:intergenic | 35.0% | |
| ! | TTTGATGGCAAATGAGCTTT+AGG | + | chr3_3:61861043-61861062 | None:intergenic | 35.0% |
| GCCATCAAAAACTACTTTGA+AGG | - | chr3_3:61861054-61861073 | Msa0462730:intron | 35.0% | |
| ! | CAAAAACTACTTTGAAGGTG+AGG | - | chr3_3:61861059-61861078 | Msa0462730:intron | 35.0% |
| ACGAAAACAGCTTATAAGCA+AGG | - | chr3_3:61861453-61861472 | Msa0462730:intron | 35.0% | |
| TGATAAACTCTTATGCAGGT+TGG | - | chr3_3:61861694-61861713 | Msa0462730:CDS | 35.0% | |
| ATAATAGTTGGTTGCCTTCT+TGG | - | chr3_3:61861767-61861786 | Msa0462730:CDS | 35.0% | |
| TCAAATACCTCATTCCAAGA+AGG | + | chr3_3:61861784-61861803 | None:intergenic | 35.0% | |
| TGAATATGACATGTCTGAGA+AGG | - | chr3_3:61861852-61861871 | Msa0462730:CDS | 35.0% | |
| ! | ATGTCTGAGAAGGATGATTT+TGG | - | chr3_3:61861862-61861881 | Msa0462730:CDS | 35.0% |
| TGTTGTATTTATCTCCTTCG+CGG | + | chr3_3:61861951-61861970 | None:intergenic | 35.0% | |
| TGGAACTTAAAGATGCAAGA+TGG | + | chr3_3:61862148-61862167 | None:intergenic | 35.0% | |
| ACCGAAAAAACACAGCGTAT+CGG | - | chr3_3:61858178-61858197 | Msa0462730:CDS | 40.0% | |
| !!! | TCCGATACGCTGTGTTTTTT+CGG | + | chr3_3:61858182-61858201 | None:intergenic | 40.0% |
| TAAAGTTCCTTTATCTCCGG+CGG | + | chr3_3:61858215-61858234 | None:intergenic | 40.0% | |
| TATCATCGTTACTCCGATGA+AGG | - | chr3_3:61858233-61858252 | Msa0462730:CDS | 40.0% | |
| CTTCAATCAGAAAGCTTCTG+AGG | + | chr3_3:61858280-61858299 | None:intergenic | 40.0% | |
| AAGATCTCCACGATCAATGA+TGG | + | chr3_3:61858342-61858361 | None:intergenic | 40.0% | |
| TCAACACTCAAGTGCATGTT+TGG | + | chr3_3:61859004-61859023 | None:intergenic | 40.0% | |
| GATGATGTTGATGTCCTTCA+TGG | - | chr3_3:61859291-61859310 | Msa0462730:intron | 40.0% | |
| ! | TTAGCTTCAAGGTACTCCTT+AGG | + | chr3_3:61859771-61859790 | None:intergenic | 40.0% |
| GAAAAGGAGGAATCACAGAA+GGG | - | chr3_3:61859801-61859820 | Msa0462730:intron | 40.0% | |
| CAAGCTTCTTCATCACCTAA+AGG | + | chr3_3:61859831-61859850 | None:intergenic | 40.0% | |
| CTTTAGGTGATGAAGAAGCT+TGG | - | chr3_3:61859829-61859848 | Msa0462730:intron | 40.0% | |
| TTAGGTGATGAAGAAGCTTG+GGG | - | chr3_3:61859831-61859850 | Msa0462730:intron | 40.0% | |
| AAAGAAGTCCCTAGTTTGAG+AGG | - | chr3_3:61859855-61859874 | Msa0462730:CDS | 40.0% | |
| CGGTACTATAGCTGATTACA+AGG | - | chr3_3:61859878-61859897 | Msa0462730:CDS | 40.0% | |
| CGATGAAGATGATCTTAAGG+AGG | - | chr3_3:61860009-61860028 | Msa0462730:CDS | 40.0% | |
| TGAAGATGATCTTAAGGAGG+AGG | - | chr3_3:61860012-61860031 | Msa0462730:CDS | 40.0% | |
| GCTTAATTGCCATTCATGCT+GGG | - | chr3_3:61860089-61860108 | Msa0462730:intron | 40.0% | |
| CATTCCACTATTCCACCTTT+AGG | + | chr3_3:61860118-61860137 | None:intergenic | 40.0% | |
| CTTAGACGTCTCACTTTATC+AGG | + | chr3_3:61860154-61860173 | None:intergenic | 40.0% | |
| GAAAAGGCTGCTGAAACATA+TGG | - | chr3_3:61860193-61860212 | Msa0462730:CDS | 40.0% | |
| ! | TGTTGGTGAAACCATTGTCA+AGG | + | chr3_3:61860365-61860384 | None:intergenic | 40.0% |
| TCACCAACAGTCTTCTTAGA+TGG | - | chr3_3:61860376-61860395 | Msa0462730:CDS | 40.0% | |
| ATGCCATCTAAGAAGACTGT+TGG | + | chr3_3:61860382-61860401 | None:intergenic | 40.0% | |
| !! | CTTTGGAACAAACACATTGC+AGG | - | chr3_3:61860464-61860483 | Msa0462730:intron | 40.0% |
| TTGATCCTCTGATTGTTGAC+AGG | - | chr3_3:61860521-61860540 | Msa0462730:intron | 40.0% | |
| ATATTGCGAGTGTATCCGAA+AGG | - | chr3_3:61860559-61860578 | Msa0462730:CDS | 40.0% | |
| GATGGTTGCATTTAACATGC+AGG | - | chr3_3:61860639-61860658 | Msa0462730:CDS | 40.0% | |
| ! | TTTTCAATTAGTAGCCGTGC+TGG | + | chr3_3:61860718-61860737 | None:intergenic | 40.0% |
| ! | AGATCTCTTTGGTTGATGCA+AGG | - | chr3_3:61860932-61860951 | Msa0462730:CDS | 40.0% |
| ! | GGAATGTTTAAAGCCAATGG+AGG | - | chr3_3:61860953-61860972 | Msa0462730:intron | 40.0% |
| ! | TTTAAAGCCAATGGAGGATG+CGG | - | chr3_3:61860959-61860978 | Msa0462730:intron | 40.0% |
| GAAAACTGGTCCCAATAATG+AGG | - | chr3_3:61861009-61861028 | Msa0462730:intron | 40.0% | |
| CTCAAATCTCAAAGCCGTAA+AGG | + | chr3_3:61861085-61861104 | None:intergenic | 40.0% | |
| GTCTAGAGACACTTGAATGA+CGG | + | chr3_3:61861139-61861158 | None:intergenic | 40.0% | |
| GTCACTGTATATATGGGAGA+AGG | - | chr3_3:61861199-61861218 | Msa0462730:intron | 40.0% | |
| CTGTATATATGGGAGAAGGA+TGG | - | chr3_3:61861203-61861222 | Msa0462730:intron | 40.0% | |
| ATCTCCAGACTTCTATGCAA+GGG | - | chr3_3:61861264-61861283 | Msa0462730:intron | 40.0% | |
| !! | GAAATGATAGAAGCACCGAA+GGG | + | chr3_3:61861665-61861684 | None:intergenic | 40.0% |
| !! | AGAAATGATAGAAGCACCGA+AGG | + | chr3_3:61861666-61861685 | None:intergenic | 40.0% |
| ! | TCTGAGAAGGATGATTTTGG+TGG | - | chr3_3:61861865-61861884 | Msa0462730:CDS | 40.0% |
| ACAAACATGCTTACCTGTGT+GGG | - | chr3_3:61861888-61861907 | Msa0462730:exon | 40.0% | |
| GTTGTATTTATCTCCTTCGC+GGG | + | chr3_3:61861950-61861969 | None:intergenic | 40.0% | |
| AAGTGGGGAGGTGATAAATA+GGG | + | chr3_3:61862070-61862089 | None:intergenic | 40.0% | |
| AAAGCCAAGTATCTCAAGTG+GGG | + | chr3_3:61862085-61862104 | None:intergenic | 40.0% | |
| GAAAGCCAAGTATCTCAAGT+GGG | + | chr3_3:61862086-61862105 | None:intergenic | 40.0% | |
| AGAAAGCCAAGTATCTCAAG+TGG | + | chr3_3:61862087-61862106 | None:intergenic | 40.0% | |
| AAAACACAGCGTATCGGAGA+CGG | - | chr3_3:61858184-61858203 | Msa0462730:CDS | 45.0% | |
| ACACAAGCCATCATTGATCG+TGG | - | chr3_3:61858332-61858351 | Msa0462730:CDS | 45.0% | |
| ! | CTCCTCTTTTACCTTCCACT+GGG | - | chr3_3:61858405-61858424 | Msa0462730:intron | 45.0% |
| ! | TCCTCTTTTACCTTCCACTG+GGG | - | chr3_3:61858406-61858425 | Msa0462730:intron | 45.0% |
| GTAAAAGAGGATTACCCCAG+TGG | + | chr3_3:61858423-61858442 | None:intergenic | 45.0% | |
| CAAGTGCATGTTTGGATCTG+CGG | + | chr3_3:61858996-61859015 | None:intergenic | 45.0% | |
| ! | TCTGAAGTGCTTCGATGATG+GGG | + | chr3_3:61859224-61859243 | None:intergenic | 45.0% |
| !! | CTCTGAAGTGCTTCGATGAT+GGG | + | chr3_3:61859225-61859244 | None:intergenic | 45.0% |
| !! | TCTCTGAAGTGCTTCGATGA+TGG | + | chr3_3:61859226-61859245 | None:intergenic | 45.0% |
| ! | ATCATCGAAGCACTTCAGAG+AGG | - | chr3_3:61859225-61859244 | Msa0462730:intron | 45.0% |
| CTTCGTTGCGTCTGAATATC+CGG | - | chr3_3:61859466-61859485 | Msa0462730:CDS | 45.0% | |
| CTAACTAACCTGAGCCACTT+TGG | + | chr3_3:61859534-61859553 | None:intergenic | 45.0% | |
| ! | AGTGGCTCAGGTTAGTTAGT+TGG | - | chr3_3:61859535-61859554 | Msa0462730:intron | 45.0% |
| TGAACAGGGCTATCAACTGT+CGG | + | chr3_3:61859629-61859648 | None:intergenic | 45.0% | |
| TCCTACCTCAGAAACCTCAA+AGG | - | chr3_3:61859692-61859711 | Msa0462730:intron | 45.0% | |
| !! | TCCTTTGAGGTTTCTGAGGT+AGG | + | chr3_3:61859696-61859715 | None:intergenic | 45.0% |
| GGAAAAGGAGGAATCACAGA+AGG | - | chr3_3:61859800-61859819 | Msa0462730:intron | 45.0% | |
| TCACAGAAGGGAAAGCCTTT+AGG | - | chr3_3:61859813-61859832 | Msa0462730:intron | 45.0% | |
| TAGTACCGCCTCTCAAACTA+GGG | + | chr3_3:61859866-61859885 | None:intergenic | 45.0% | |
| ATAGTACCGCCTCTCAAACT+AGG | + | chr3_3:61859867-61859886 | None:intergenic | 45.0% | |
| AGATTCCGATGAAGCGGAAA+AGG | - | chr3_3:61860036-61860055 | Msa0462730:CDS | 45.0% | |
| CGCTTAATTGCCATTCATGC+TGG | - | chr3_3:61860088-61860107 | Msa0462730:intron | 45.0% | |
| TTTAGGCTTCCCAGCATGAA+TGG | + | chr3_3:61860101-61860120 | None:intergenic | 45.0% | |
| ATTCATGCTGGGAAGCCTAA+AGG | - | chr3_3:61860100-61860119 | Msa0462730:intron | 45.0% | |
| GAAGCCTAAAGGTGGAATAG+TGG | - | chr3_3:61860111-61860130 | Msa0462730:intron | 45.0% | |
| GAATCAAGAGCCAATGCAAC+AGG | + | chr3_3:61860294-61860313 | None:intergenic | 45.0% | |
| GTGAACCTGTCAACAATCAG+AGG | + | chr3_3:61860529-61860548 | None:intergenic | 45.0% | |
| GAGGTAATGCGTGTACCTTT+CGG | + | chr3_3:61860577-61860596 | None:intergenic | 45.0% | |
| CCATGCATCCACCCAATTAA+TGG | + | chr3_3:61860613-61860632 | None:intergenic | 45.0% | |
| CCATTAATTGGGTGGATGCA+TGG | - | chr3_3:61860610-61860629 | Msa0462730:CDS | 45.0% | |
| !! | TTTTGCTGTGGGTGGTTCTT+TGG | - | chr3_3:61860897-61860916 | Msa0462730:CDS | 45.0% |
| TGGTTCTTTGGCAGGGTTAT+GGG | - | chr3_3:61860909-61860928 | Msa0462730:CDS | 45.0% | |
| AGGGTTATGGGAGATCTCTT+TGG | - | chr3_3:61860921-61860940 | Msa0462730:CDS | 45.0% | |
| AACAAAACCGCATCCTCCAT+TGG | + | chr3_3:61860969-61860988 | None:intergenic | 45.0% | |
| ! | CTTTGAAGGTGAGGCCTTTA+CGG | - | chr3_3:61861068-61861087 | Msa0462730:intron | 45.0% |
| CATCTCCAGACTTCTATGCA+AGG | - | chr3_3:61861263-61861282 | Msa0462730:intron | 45.0% | |
| CATACCCTTGCATAGAAGTC+TGG | + | chr3_3:61861271-61861290 | None:intergenic | 45.0% | |
| ! | CTTATGCAGGTTGGAATTGC+TGG | - | chr3_3:61861703-61861722 | Msa0462730:CDS | 45.0% |
| TTGGTTGCCTTCTTGGAATG+AGG | - | chr3_3:61861774-61861793 | Msa0462730:CDS | 45.0% | |
| TGAATTCCCGCTTTCTGTTC+CGG | - | chr3_3:61861801-61861820 | Msa0462730:CDS | 45.0% | |
| GACAAACATGCTTACCTGTG+TGG | - | chr3_3:61861887-61861906 | Msa0462730:exon | 45.0% | |
| CCTGTGTGGGAACTAAGAAA+CGG | - | chr3_3:61861901-61861920 | Msa0462730:exon | 45.0% | |
| CAAGTGGGGAGGTGATAAAT+AGG | + | chr3_3:61862071-61862090 | None:intergenic | 45.0% | |
| !! | GTGCTGACTTTGGCCAAAAA+GGG | + | chr3_3:61862126-61862145 | None:intergenic | 45.0% |
| !! | ATGCAAGATGGTGCTGACTT+TGG | + | chr3_3:61862136-61862155 | None:intergenic | 45.0% |
| GAAATGGCACATGGCATCCT+TGG | + | chr3_3:61857980-61857999 | None:intergenic | 50.0% | |
| !! | CCATGTGCCATTTCCAACGT+GGG | - | chr3_3:61857986-61858005 | Msa0462730:intron | 50.0% |
| ! | TTTGGGACCCACGTTGGAAA+TGG | + | chr3_3:61857996-61858015 | None:intergenic | 50.0% |
| CATCGTTACTCCGATGAAGG+CGG | - | chr3_3:61858236-61858255 | Msa0462730:CDS | 50.0% | |
| ATCGTTACTCCGATGAAGGC+GGG | - | chr3_3:61858237-61858256 | Msa0462730:CDS | 50.0% | |
| TGTCATGATCCCGCCTTCAT+CGG | + | chr3_3:61858249-61858268 | None:intergenic | 50.0% | |
| CCAGTGGAAGGTAAAAGAGG+AGG | + | chr3_3:61858407-61858426 | None:intergenic | 50.0% | |
| ! | CCTCCTCTTTTACCTTCCAC+TGG | - | chr3_3:61858404-61858423 | Msa0462730:intron | 50.0% |
| ACCCCAGTGGAAGGTAAAAG+AGG | + | chr3_3:61858410-61858429 | None:intergenic | 50.0% | |
| AAGAGGATTACCCCAGTGGA+AGG | + | chr3_3:61858419-61858438 | None:intergenic | 50.0% | |
| ! | CTGAAGTGCTTCGATGATGG+GGG | + | chr3_3:61859223-61859242 | None:intergenic | 50.0% |
| CGGATATTCAGACGCAACGA+AGG | + | chr3_3:61859468-61859487 | None:intergenic | 50.0% | |
| CCTGAAGATCAGGAGTAAGG+TGG | + | chr3_3:61859511-61859530 | None:intergenic | 50.0% | |
| CCACCTTACTCCTGATCTTC+AGG | - | chr3_3:61859508-61859527 | Msa0462730:CDS | 50.0% | |
| TGGCCTGAAGATCAGGAGTA+AGG | + | chr3_3:61859514-61859533 | None:intergenic | 50.0% | |
| TCCTGATCTTCAGGCCAAAG+TGG | - | chr3_3:61859517-61859536 | Msa0462730:intron | 50.0% | |
| CATATCAACCAAGCCGCCTA+AGG | - | chr3_3:61859752-61859771 | Msa0462730:intron | 50.0% | |
| ! | GCTTCAAGGTACTCCTTAGG+CGG | + | chr3_3:61859768-61859787 | None:intergenic | 50.0% |
| GAAGTCCCTAGTTTGAGAGG+CGG | - | chr3_3:61859858-61859877 | Msa0462730:CDS | 50.0% | |
| GGAGGAAGATTCCGATGAAG+CGG | - | chr3_3:61860030-61860049 | Msa0462730:CDS | 50.0% | |
| AAGCGAGTCACAGCTCGAAA+AGG | - | chr3_3:61860177-61860196 | Msa0462730:CDS | 50.0% | |
| GTGGTTCTTTGGCAGGGTTA+TGG | - | chr3_3:61860908-61860927 | Msa0462730:CDS | 50.0% | |
| ! | GCTGGAGTCCCTTTTGATAC+TGG | - | chr3_3:61861721-61861740 | Msa0462730:CDS | 50.0% |
| CCGTTTCTTAGTTCCCACAC+AGG | + | chr3_3:61861904-61861923 | None:intergenic | 50.0% | |
| GTTCCATTACATTCCCGCGA+AGG | - | chr3_3:61861934-61861953 | Msa0462730:five_prime_UTR | 50.0% | |
| TCTCCTTCGCGGGAATGTAA+TGG | + | chr3_3:61861940-61861959 | None:intergenic | 50.0% | |
| ACCTCCCCACTTGAGATACT+TGG | - | chr3_3:61862078-61862097 | Msa0462730:five_prime_UTR | 50.0% | |
| !! | GGTGCTGACTTTGGCCAAAA+AGG | + | chr3_3:61862127-61862146 | None:intergenic | 50.0% |
| !! | GCCATGTGCCATTTCCAACG+TGG | - | chr3_3:61857985-61858004 | Msa0462730:intron | 55.0% |
| CCCACGTTGGAAATGGCACA+TGG | + | chr3_3:61857989-61858008 | None:intergenic | 55.0% | |
| TTCCAACGTGGGTCCCAAAC+AGG | - | chr3_3:61857997-61858016 | Msa0462730:intron | 55.0% | |
| TGACGTGCTTGCGTTGCTCT+TGG | - | chr3_3:61858558-61858577 | Msa0462730:intron | 55.0% | |
| GACGTGCTTGCGTTGCTCTT+GGG | - | chr3_3:61858559-61858578 | Msa0462730:intron | 55.0% | |
| CAGGACATTGACGACTCCTG+TGG | - | chr3_3:61859406-61859425 | Msa0462730:intron | 55.0% | |
| ! | GCCACTTTGGCCTGAAGATC+AGG | + | chr3_3:61859521-61859540 | None:intergenic | 55.0% |
| TCTTCAGGCCAAAGTGGCTC+AGG | - | chr3_3:61859523-61859542 | Msa0462730:intron | 55.0% | |
| ! | AAGGTACTCCTTAGGCGGCT+TGG | + | chr3_3:61859763-61859782 | None:intergenic | 55.0% |
| ! | GCGTGCCTTTTCCGCTTCAT+CGG | + | chr3_3:61860044-61860063 | None:intergenic | 55.0% |
| CATGCTGGGAAGCCTAAAGG+TGG | - | chr3_3:61860103-61860122 | Msa0462730:intron | 55.0% | |
| GTGGATGCATGGAGCTCAGA+TGG | - | chr3_3:61860621-61860640 | Msa0462730:CDS | 55.0% | |
| GAAACCTGTGAGGTCCAGCA+CGG | - | chr3_3:61860701-61860720 | Msa0462730:intron | 55.0% | |
| CTGTGGGTGGTTCTTTGGCA+GGG | - | chr3_3:61860902-61860921 | Msa0462730:CDS | 55.0% | |
| GCCAAGTATCTCAAGTGGGG+AGG | + | chr3_3:61862082-61862101 | None:intergenic | 55.0% | |
| ! | GACCTGTTTGGGACCCACGT+TGG | + | chr3_3:61858002-61858021 | None:intergenic | 60.0% |
| ACACAGCGTATCGGAGACGG+AGG | - | chr3_3:61858187-61858206 | Msa0462730:CDS | 60.0% | |
| GCTGTGGGTGGTTCTTTGGC+AGG | - | chr3_3:61860901-61860920 | Msa0462730:CDS | 60.0% | |
| CCAGCTCCGGAACAGAAAGC+GGG | + | chr3_3:61861810-61861829 | None:intergenic | 60.0% | |
| GCCAGCTCCGGAACAGAAAG+CGG | + | chr3_3:61861811-61861830 | None:intergenic | 60.0% | |
| !! | GGAGGCACCGCCGGAGATAA+AGG | - | chr3_3:61858205-61858224 | Msa0462730:CDS | 65.0% |
| GTAGCCGTGCTGGACCTCAC+AGG | + | chr3_3:61860708-61860727 | None:intergenic | 65.0% | |
| CCCGCTTTCTGTTCCGGAGC+TGG | - | chr3_3:61861807-61861826 | Msa0462730:CDS | 65.0% | |
| ATGCGAAGCAGCGCCAGCTC+CGG | + | chr3_3:61861823-61861842 | None:intergenic | 65.0% | |
| !! | ATCGGAGACGGAGGCACCGC+CGG | - | chr3_3:61858196-61858215 | Msa0462730:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 61857825 | 61862247 | 61857825 | ID=Msa0462730;Name=Msa0462730 |
| chr3_3 | mRNA | 61857825 | 61862247 | 61857825 | ID=Msa0462730-mRNA-1;Parent=Msa0462730;Name=Msa0462730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=342|1|1|1|0.88|0.8|10|166|574 |
| chr3_3 | exon | 61857825 | 61857984 | 61857825 | ID=Msa0462730-mRNA-1:exon:13160;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61858061 | 61858360 | 61858061 | ID=Msa0462730-mRNA-1:exon:13159;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61858787 | 61858873 | 61858787 | ID=Msa0462730-mRNA-1:exon:13158;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61858997 | 61859149 | 61858997 | ID=Msa0462730-mRNA-1:exon:13157;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61859412 | 61859529 | 61859412 | ID=Msa0462730-mRNA-1:exon:13156;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61859842 | 61860077 | 61859842 | ID=Msa0462730-mRNA-1:exon:13155;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61860173 | 61860415 | 61860173 | ID=Msa0462730-mRNA-1:exon:13154;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61860528 | 61860663 | 61860528 | ID=Msa0462730-mRNA-1:exon:13153;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61860756 | 61860952 | 61860756 | ID=Msa0462730-mRNA-1:exon:13152;Parent=Msa0462730-mRNA-1 |
| chr3_3 | exon | 61861645 | 61862247 | 61861645 | ID=Msa0462730-mRNA-1:exon:13151;Parent=Msa0462730-mRNA-1 |
| chr3_3 | five_prime_UTR | 61861906 | 61862247 | 61861906 | ID=Msa0462730-mRNA-1:five_prime_utr;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61861645 | 61861905 | 61861645 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61860756 | 61860952 | 61860756 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61860528 | 61860663 | 61860528 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61860173 | 61860415 | 61860173 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61859842 | 61860077 | 61859842 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61859412 | 61859529 | 61859412 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61858997 | 61859149 | 61858997 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61858787 | 61858873 | 61858787 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | CDS | 61858067 | 61858360 | 61858067 | ID=Msa0462730-mRNA-1:cds;Parent=Msa0462730-mRNA-1 |
| chr3_3 | three_prime_UTR | 61858061 | 61858066 | 61858061 | ID=Msa0462730-mRNA-1:three_prime_utr;Parent=Msa0462730-mRNA-1 |
| chr3_3 | three_prime_UTR | 61857825 | 61857984 | 61857825 | ID=Msa0462730-mRNA-1:three_prime_utr;Parent=Msa0462730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
