AlfalfaGEDB | Msa0086090

M. sativa cultivar zhongmu-4 / Msa0086090

KEGG: -
GO: -
PFAM: PF02496.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0086090	sp\|P37219\|ASR2_SOLLC	66.667	69	23	0	197	265	25	93	5.02e-16	75.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0086090	G7IBZ5	80.208	288	24	5	1	286	1	257	4.87e-62	206

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0086090	0.842967	1.871187e-58	-8.615850e-47
Msa0004350	Msa0086090	0.805997	1.018902e-49	-8.615850e-47
Msa0006700	Msa0086090	0.824216	9.102511e-54	-8.615850e-47
Msa0008330	Msa0086090	0.837200	5.981431e-57	-8.615850e-47
Msa0008850	Msa0086090	0.872182	3.870175e-67	-8.615850e-47
Msa0011720	Msa0086090	0.806425	8.279524e-50	-8.615850e-47
Msa0011850	Msa0086090	0.800577	1.349989e-48	-8.615850e-47
Msa0017120	Msa0086090	0.855041	8.232570e-62	-8.615850e-47
Msa0020630	Msa0086090	0.831762	1.388840e-55	-8.615850e-47
Msa0024680	Msa0086090	0.824977	6.025914e-54	-8.615850e-47

Showing 1 to 10 of 768 entries

Previous1 2 3 4 5…77Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0086090	MtrunA17_Chr1g0201791	80.208	288	24	5	1	286	1	257	9.38e-66	206
Msa0086090	MtrunA17_Chr6g0464351	70.330	91	27	0	195	285	20	110	5.21e-18	77.8
Msa0086090	MtrunA17_Chr6g0472131	69.231	91	25	1	195	285	20	107	1.26e-15	71.2

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 106 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACCACTGGCGGCTA+CGG	0.502509	1_2:-66677964	Msa0086090:CDS
AAAACCACTGGTGGTGGCTA+CGG	0.535946	1_2:-66678063	Msa0086090:CDS
AACAAAACATCATACTCTAC+AGG	0.515763	1_2:-66678315	Msa0086090:CDS
AAGAAGAAACACCATTTCTT+TGG	0.248898	1_2:-66676565	Msa0086090:CDS
AAGACCCAGAGAACGCTCAC+AGG	0.577440	1_2:-66676702	Msa0086090:CDS
AATGAAACATCTGGTGGCTA+TGG	0.540775	1_2:-66678141	Msa0086090:CDS
AATGATGACCAGCCATCTGG+TGG	0.714048	1_2:-66678252	Msa0086090:CDS
AATTACCAAAGCAAAACCGC+CGG	0.640922	1_2:+66677750	None:intergenic
ACAACCACGGGTGGCGGATA+TGG	0.315139	1_2:-66678012	Msa0086090:CDS
ACAACCACTGGAGGCGGCTA+CGG	0.519220	1_2:-66677913	Msa0086090:CDS

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAACATCATACTCTAC+AGG	-	chr1_2:66676344-66676363	Msa0086090:three_prime_UTR	30.0%
TCTAATAATGAAACATCTGG+TGG	-	chr1_2:66676512-66676531	Msa0086090:three_prime_UTR	30.0%
GGAGAGATTAAATAGCAATT+AGG	+	chr1_2:66676957-66676976	None:intergenic	30.0%
AATGATTATCTCAAACATCG+TGG	+	chr1_2:66677453-66677472	None:intergenic	30.0%
AAGCCTATAACAAATACGAA+CGG	-	chr1_2:66677669-66677688	Msa0086090:intron	30.0%
GTTACGCTATAAATAGACAT+AGG	-	chr1_2:66677826-66677845	Msa0086090:CDS	30.0%
TCATGAGAAAAAGGAAACAA+AGG	-	chr1_2:66678048-66678067	Msa0086090:CDS	30.0%
AAGAAGAAACACCATTTCTT+TGG	-	chr1_2:66678094-66678113	Msa0086090:CDS	30.0%
CATATGTTCATCCAAAGAAA+TGG	+	chr1_2:66678108-66678127	None:intergenic	30.0%
ATAAGCACACAAGCATATTA+TGG	-	chr1_2:66678147-66678166	Msa0086090:CDS	30.0%

Showing 1 to 10 of 284 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	66676251	66678430	66676251	ID=Msa0086090;Name=Msa0086090
chr1_2	mRNA	66676251	66678430	66676251	ID=Msa0086090-mRNA-1;Parent=Msa0086090;Name=Msa0086090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|0.5\|1\|1\|1\|2\|310\|286
chr1_2	exon	66676251	66676746	66676251	ID=Msa0086090-mRNA-1:exon:22496;Parent=Msa0086090-mRNA-1
chr1_2	exon	66677756	66678430	66677756	ID=Msa0086090-mRNA-1:exon:22495;Parent=Msa0086090-mRNA-1
chr1_2	CDS	66677756	66678430	66677756	ID=Msa0086090-mRNA-1:cds;Parent=Msa0086090-mRNA-1
chr1_2	CDS	66676561	66676746	66676561	ID=Msa0086090-mRNA-1:cds;Parent=Msa0086090-mRNA-1
chr1_2	three_prime_UTR	66676251	66676560	66676251	ID=Msa0086090-mRNA-1:three_prime_utr;Parent=Msa0086090-mRNA-1

Gene Sequence

>Msa0086090

ATGTCTGATGAAGAGAACCGTAGCCGTGGCCTCTTCCATCACAAGAAGCATGATGATGATGATAGTAGGCCTATAGACACTGACAGTGGTTACAACAAAACATCATACTCTACAGGTGATGACTATGATTCTGGTTATAACAAAAAAACATCGTACAATGATGACCAGCCATCTGGTGGTGGTTACAATAAAACATCATATGGTAATGACAATTCTGGTGGTGACTATGAAACTGGTTACAATAAGAACACTGATAATTACTCTAATAATGAAACATCTGGTGGCTATGGTGCCAAAACAACCACTGGTGGCGGCTACGGCGGTGGTTATGGTGACTCTGACACCAAAACCACTGGTGGTGGCTACGGTGGTGGTTATGGTGACTCTGACACCAAAACAACCACGGGTGGCGGATATGGTGGTGGTTATGGTGACTCTGACACTAAAACAACCACTGGCGGCTACGGTGGTGGTTATGGTGATTCTGACACTAAAACAACCACTGGAGGCGGCTACGGTGGTGGATATGGTGACTCTGACACCAAAACCACCACCGGTGGTGGTTATGGTGACGATCGTCGTGAAGACGTTGATTATAAGAACGAGGAGAAACGCCACAGCAAAGATGAGCATCTTGGTGAGTTAGGTGCTGCAGCTGCCGGCGGTTTTGCTTTGTATGAGAAGCAAAAGTCAGAGAAAGACCCAGAGAACGCTCACAGGCACAAGATAGAAGAAGAAGTTGCAGAAGCAGCTGCAGTGGGATCTGGTGGGTTCGCCTTCCATGAGCATCATGAGAAAAAGGAAACAAAGGAGGAAGAAGAGGAAGCTCAGGGAAAGAAGAAACACCATTTCTTTGGATGA

Protein sequence

>Msa0086090

MSDEENRSRGLFHHKKHDDDDSRPIDTDSGYNKTSYSTGDDYDSGYNKKTSYNDDQPSGGGYNKTSYGNDNSGGDYETGYNKNTDNYSNNETSGGYGAKTTTGGGYGGGYGDSDTKTTGGGYGGGYGDSDTKTTTGGGYGGGYGDSDTKTTTGGYGGGYGDSDTKTTTGGGYGGGYGDSDTKTTTGGGYGDDRREDVDYKNEEKRHSKDEHLGELGAAAAGGFALYEKQKSEKDPENAHRHKIEEEVAEAAAVGSGGFAFHEHHEKKETKEEEEEAQGKKKHHFFG*