Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508310 | XP_003600780.1 | 97.387 | 574 | 13 | 1 | 1 | 574 | 1 | 572 | 0.0 | 1156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508310 | sp|Q39033|PLCD2_ARATH | 68.330 | 581 | 167 | 6 | 2 | 574 | 10 | 581 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508310 | G7JA07 | 97.387 | 574 | 13 | 1 | 1 | 574 | 1 | 572 | 0.0 | 1156 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0368780 | Msa0508310 | 0.858441 | 8.222176e-63 | -8.615850e-47 |
| Msa0462730 | Msa0508310 | 0.872219 | 3.761505e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508310 | MtrunA17_Chr3g0112551 | 97.387 | 574 | 13 | 1 | 1 | 574 | 1 | 572 | 0.0 | 1156 |
| Msa0508310 | MtrunA17_Chr3g0113531 | 91.429 | 595 | 28 | 3 | 1 | 574 | 1 | 593 | 0.0 | 1016 |
| Msa0508310 | MtrunA17_Chr5g0437081 | 74.003 | 577 | 139 | 5 | 6 | 573 | 14 | 588 | 0.0 | 885 |
| Msa0508310 | MtrunA17_Chr5g0430181 | 61.735 | 588 | 201 | 7 | 6 | 574 | 12 | 594 | 0.0 | 735 |
| Msa0508310 | MtrunA17_Chr5g0437061 | 62.823 | 503 | 154 | 6 | 92 | 573 | 1 | 491 | 0.0 | 630 |
| Msa0508310 | MtrunA17_Chr5g0437041 | 50.000 | 600 | 256 | 8 | 6 | 573 | 19 | 606 | 0.0 | 584 |
| Msa0508310 | MtrunA17_Chr3g0113521 | 50.342 | 584 | 262 | 8 | 6 | 573 | 15 | 586 | 0.0 | 570 |
| Msa0508310 | MtrunA17_Chr3g0113471 | 50.514 | 584 | 261 | 8 | 7 | 573 | 15 | 587 | 0.0 | 567 |
| Msa0508310 | MtrunA17_Chr5g0430191 | 50.785 | 573 | 235 | 10 | 13 | 573 | 35 | 572 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508310 | AT3G08510.2 | 68.330 | 581 | 167 | 6 | 2 | 574 | 10 | 581 | 0.0 | 822 |
| Msa0508310 | AT3G08510.1 | 68.330 | 581 | 167 | 6 | 2 | 574 | 10 | 581 | 0.0 | 822 |
| Msa0508310 | AT3G55940.1 | 66.209 | 583 | 177 | 8 | 2 | 574 | 12 | 584 | 0.0 | 771 |
| Msa0508310 | AT3G08510.4 | 64.372 | 581 | 161 | 7 | 2 | 574 | 10 | 552 | 0.0 | 749 |
| Msa0508310 | AT3G08510.3 | 64.372 | 581 | 161 | 7 | 2 | 574 | 10 | 552 | 0.0 | 749 |
| Msa0508310 | AT2G40116.1 | 59.498 | 558 | 196 | 7 | 32 | 573 | 69 | 612 | 0.0 | 668 |
| Msa0508310 | AT5G58700.3 | 56.485 | 586 | 232 | 7 | 6 | 574 | 18 | 597 | 0.0 | 662 |
| Msa0508310 | AT5G58700.1 | 56.485 | 586 | 232 | 7 | 6 | 574 | 18 | 597 | 0.0 | 662 |
| Msa0508310 | AT5G58700.2 | 62.857 | 490 | 175 | 4 | 88 | 574 | 4 | 489 | 0.0 | 632 |
| Msa0508310 | AT5G58690.2 | 52.659 | 583 | 225 | 7 | 15 | 574 | 5 | 559 | 0.0 | 610 |
| Msa0508310 | AT5G58690.3 | 52.659 | 583 | 225 | 7 | 15 | 574 | 24 | 578 | 0.0 | 609 |
| Msa0508310 | AT5G58690.1 | 52.659 | 583 | 225 | 7 | 15 | 574 | 24 | 578 | 0.0 | 609 |
| Msa0508310 | AT5G58670.1 | 51.034 | 580 | 242 | 6 | 2 | 571 | 9 | 556 | 0.0 | 569 |
| Msa0508310 | AT4G38530.1 | 48.427 | 572 | 249 | 8 | 12 | 571 | 18 | 555 | 0.0 | 531 |
| Msa0508310 | AT3G47290.1 | 39.961 | 513 | 245 | 10 | 63 | 573 | 79 | 530 | 6.74e-120 | 365 |
| Msa0508310 | AT3G47290.2 | 39.842 | 507 | 239 | 11 | 63 | 567 | 79 | 521 | 3.78e-116 | 357 |
| Msa0508310 | AT3G47220.1 | 36.348 | 586 | 288 | 13 | 7 | 573 | 11 | 530 | 8.84e-111 | 341 |
Find 164 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATAATCCATTAAT+TGG | 0.072901 | 3_4:-56177603 | Msa0508310:CDS |
| ATAATAGTTGGTTGCCTTCT+TGG | 0.178944 | 3_4:-56176445 | Msa0508310:CDS |
| AGGATCGAAAACCTCATTAT+TGG | 0.216160 | 3_4:+56177181 | None:intergenic |
| GCAATCATACATGCTATTAA+AGG | 0.227701 | 3_4:-56180451 | Msa0508310:five_prime_UTR |
| CAAATGTTTGACGTCTATTA+AGG | 0.230837 | 3_4:-56178872 | Msa0508310:CDS |
| CCATGCATCCACCCAATTAA+TGG | 0.240859 | 3_4:+56177591 | None:intergenic |
| TAATTAGGTCACTGTATATA+TGG | 0.245203 | 3_4:-56177009 | Msa0508310:intron |
| ATACATGCTATTAAAGGATT+TGG | 0.249059 | 3_4:-56180445 | Msa0508310:five_prime_UTR |
| TGGTTCTTTGGCAGGGTTAT+GGG | 0.259926 | 3_4:-56177292 | Msa0508310:intron |
| TGTAGTCATCTGATGCATTT+TGG | 0.262746 | 3_4:+56178245 | None:intergenic |
| GTGGTTCTTTGGCAGGGTTA+TGG | 0.264327 | 3_4:-56177293 | Msa0508310:intron |
| CTTAGACGTCTCACTTTATC+AGG | 0.266369 | 3_4:+56178157 | None:intergenic |
| CCCGCTTTCTGTTCCGGAGC+TGG | 0.275180 | 3_4:-56176405 | Msa0508310:CDS |
| TTTGATGGCAAATGAGCTTT+AGG | 0.277773 | 3_4:+56177161 | None:intergenic |
| CTTATGCAGGTTGGAATTGC+TGG | 0.289356 | 3_4:-56176509 | Msa0508310:intron |
| TGAATTCCCGCTTTCTGTTC+CGG | 0.306917 | 3_4:-56176411 | Msa0508310:CDS |
| AATATTGTTGGGACCTGTTT+GGG | 0.310488 | 3_4:+56180285 | None:intergenic |
| AGGGTTATGGGAGATCTCTT+TGG | 0.311117 | 3_4:-56177280 | Msa0508310:CDS |
| GGATCGAAAACCTCATTATT+GGG | 0.335505 | 3_4:+56177182 | None:intergenic |
| GGAGGCACCGCCGGAGATAA+AGG | 0.353591 | 3_4:-56180085 | Msa0508310:CDS |
| CTCTGAAGTGCTTCGATGAT+GGG | 0.355533 | 3_4:+56179086 | None:intergenic |
| CTTCGTTGCGTCTGAATATC+CGG | 0.360784 | 3_4:-56178842 | Msa0508310:CDS |
| CCACCTTACTCCTGATCTTC+AGG | 0.370917 | 3_4:-56178800 | Msa0508310:CDS |
| AAATATTGTTGGGACCTGTT+TGG | 0.371843 | 3_4:+56180284 | None:intergenic |
| TAGATGGTTACTCAAACATT+TGG | 0.373406 | 3_4:-56178654 | Msa0508310:CDS |
| TCACAGAAGGGAAAGCCTTT+AGG | 0.380419 | 3_4:-56178495 | Msa0508310:CDS |
| ATGTCTGAGAAGGATGATTT+TGG | 0.381957 | 3_4:-56176350 | Msa0508310:CDS |
| TATATGGCCTAATGACTCTA+AGG | 0.383342 | 3_4:-56179039 | Msa0508310:CDS |
| CATTCCACTATTCCACCTTT+AGG | 0.387588 | 3_4:+56178193 | None:intergenic |
| GCCACTTTGGCCTGAAGATC+AGG | 0.391390 | 3_4:+56178790 | None:intergenic |
| CGCTTAATTGCTATTCATGC+TGG | 0.391854 | 3_4:-56178220 | Msa0508310:CDS |
| AGGAGTAAGGTGGTCTTCTA+AGG | 0.392968 | 3_4:+56178810 | None:intergenic |
| GAGTGATTGAATTGGATATA+TGG | 0.394919 | 3_4:-56179055 | Msa0508310:CDS |
| GGTCATAATTCATATCTAAC+TGG | 0.395881 | 3_4:-56179140 | Msa0508310:CDS |
| AGCTTAGAAGTTTAGCTACT+AGG | 0.401385 | 3_4:-56176201 | Msa0508310:three_prime_UTR |
| TAAAATTCAATGAAATACTA+AGG | 0.405027 | 3_4:+56180402 | None:intergenic |
| GACATGGCACATGGCATCCT+TGG | 0.405375 | 3_4:+56180318 | None:intergenic |
| TTTAGGTGAGGAAGAAGCTT+GGG | 0.412186 | 3_4:-56178478 | Msa0508310:CDS |
| TCTCTGAAGTGCTTCGATGA+TGG | 0.421908 | 3_4:+56179085 | None:intergenic |
| ACGAGTACAAATATGTGTTA+TGG | 0.424472 | 3_4:+56176123 | None:intergenic |
| AGGTGTTAGAGTGATTGAAT+TGG | 0.428703 | 3_4:-56179063 | Msa0508310:CDS |
| TCCTACCTCAGAAACCTTGA+AGG | 0.435352 | 3_4:-56178616 | Msa0508310:CDS |
| ACCTGTGTGGGAACTAAGAA+AGG | 0.437355 | 3_4:-56176312 | Msa0508310:CDS |
| CATACCCTTGCATAGAAGTC+TGG | 0.448430 | 3_4:+56176933 | None:intergenic |
| TCTCCTTCGCGGGAATGTAA+TGG | 0.452778 | 3_4:+56176275 | None:intergenic |
| AATTCTGAAGAAATATTGTT+GGG | 0.452852 | 3_4:+56180274 | None:intergenic |
| GATGATGTTGATGTCCTTCA+TGG | 0.454017 | 3_4:-56179017 | Msa0508310:CDS |
| TCTTCTAAGGTTATTACAAC+CGG | 0.454332 | 3_4:+56178823 | None:intergenic |
| CAAATTATAATCCATTAATT+GGG | 0.455647 | 3_4:-56177602 | Msa0508310:CDS |
| ATGCGAAGCAGCGCCAGCTC+CGG | 0.456222 | 3_4:+56176392 | None:intergenic |
| CATATGGAAAAGAAATTGTC+AGG | 0.456553 | 3_4:-56178099 | Msa0508310:intron |
| GTCCAACGTGGGTCCCAAAC+AGG | 0.458551 | 3_4:-56180298 | Msa0508310:five_prime_UTR |
| AGATTCCGATGAAGCGGAAA+AGG | 0.459147 | 3_4:-56178272 | Msa0508310:CDS |
| CCTTGAAGCTAAAGAAGAAA+AGG | 0.464912 | 3_4:-56178529 | Msa0508310:CDS |
| AAATCATGCTTGGAAAGTTA+AGG | 0.464924 | 3_4:+56176054 | None:intergenic |
| AAGGTACTCCTTAGGCGGCT+TGG | 0.465613 | 3_4:+56178548 | None:intergenic |
| GAAAAGGCTGCTGAAACATA+TGG | 0.467059 | 3_4:-56178115 | Msa0508310:CDS |
| CTAACTAACCTGAGCCACTT+TGG | 0.472125 | 3_4:+56178777 | None:intergenic |
| ATAGTACCGCCTCTCAAACT+AGG | 0.474142 | 3_4:+56178444 | None:intergenic |
| CAAGCTTCTTCCTCACCTAA+AGG | 0.476073 | 3_4:+56178480 | None:intergenic |
| GAGGTAATGCGTGTACCTTT+CGG | 0.479808 | 3_4:+56177627 | None:intergenic |
| GTTTATCTTAAATACCCTCT+TGG | 0.480633 | 3_4:-56176179 | Msa0508310:three_prime_UTR |
| GACGTCAAACATTTGATAAG+TGG | 0.483251 | 3_4:+56178880 | None:intergenic |
| AGCTAAAGAAGAAAAGGAAA+AGG | 0.484145 | 3_4:-56178523 | Msa0508310:CDS |
| AACAAAACCGCATCCTCCAT+TGG | 0.486065 | 3_4:+56177235 | None:intergenic |
| CCATTAATTGGGTGGATGCA+TGG | 0.487420 | 3_4:-56177591 | Msa0508310:CDS |
| AAATTCTGAAGAAATATTGT+TGG | 0.489349 | 3_4:+56180273 | None:intergenic |
| TATCATCGTTACTCCGATGA+AGG | 0.489870 | 3_4:-56180057 | Msa0508310:CDS |
| AAGATCTCTACGATCAATGA+TGG | 0.489914 | 3_4:+56179951 | None:intergenic |
| TCTTCAGGCCAAAGTGGCTC+AGG | 0.489930 | 3_4:-56178785 | Msa0508310:intron |
| CAAAGTCAACAGATAATAGT+TGG | 0.492685 | 3_4:-56176457 | Msa0508310:CDS |
| AATTAGGTCACTGTATATAT+GGG | 0.492839 | 3_4:-56177008 | Msa0508310:intron |
| GATGGTTGCATTTAACATGC+AGG | 0.494100 | 3_4:-56177562 | Msa0508310:intron |
| TTGGTTGCCTTCTTGGAATG+AGG | 0.497276 | 3_4:-56176438 | Msa0508310:CDS |
| TAAAGAAGAAAAGGAAAAGG+AGG | 0.506940 | 3_4:-56178520 | Msa0508310:CDS |
| TGTCGATGAAGATGATCTTA+AGG | 0.513054 | 3_4:-56178302 | Msa0508310:CDS |
| TCCTTCAAGGTTTCTGAGGT+AGG | 0.514356 | 3_4:+56178615 | None:intergenic |
| GAAAACTGGTCCCAATAATG+AGG | 0.515061 | 3_4:-56177192 | Msa0508310:CDS |
| CGGTACTATAGCTGATTACA+AGG | 0.516593 | 3_4:-56178430 | Msa0508310:intron |
| GTTGTATTTATCTCCTTCGC+GGG | 0.517351 | 3_4:+56176265 | None:intergenic |
| ATCGTTACTCCGATGAAGGC+GGG | 0.518193 | 3_4:-56180053 | Msa0508310:CDS |
| ATCGGAGACGGAGGCACCGC+CGG | 0.519846 | 3_4:-56180094 | Msa0508310:CDS |
| CAAGGAATGTTTAAAGCCAA+TGG | 0.521167 | 3_4:-56177251 | Msa0508310:CDS |
| TGTCAAATGTAAATCATGCT+TGG | 0.521267 | 3_4:+56176044 | None:intergenic |
| AGGTGAAAGAAATTCCTTCA+AGG | 0.523272 | 3_4:+56178602 | None:intergenic |
| GAAGCCTAAAGGTGGAATAG+TGG | 0.523615 | 3_4:-56178197 | Msa0508310:CDS |
| TTAGCTTCAAGGTACTCCTT+AGG | 0.524662 | 3_4:+56178540 | None:intergenic |
| TCTGAAGTGCTTCGATGATG+GGG | 0.528251 | 3_4:+56179087 | None:intergenic |
| TCACATTATTACATATTCAC+CGG | 0.529900 | 3_4:-56179161 | Msa0508310:CDS |
| TGGCCTGAAGATCAGGAGTA+AGG | 0.530572 | 3_4:+56178797 | None:intergenic |
| TGTCATGATCCCGCCTTCAT+CGG | 0.531322 | 3_4:+56180044 | None:intergenic |
| CATATCAACCAAGCCGCCTA+AGG | 0.532591 | 3_4:-56178556 | Msa0508310:CDS |
| TTTGGGACCCACGTTGGACA+TGG | 0.533632 | 3_4:+56180302 | None:intergenic |
| TGTTGTATTTATCTCCTTCG+CGG | 0.535824 | 3_4:+56176264 | None:intergenic |
| ATTATAATCCATTAATTGGG+TGG | 0.536189 | 3_4:-56177599 | Msa0508310:CDS |
| GGAAAAGGAGGAATCACAGA+AGG | 0.541089 | 3_4:-56178508 | Msa0508310:CDS |
| CATGATAATAGATAATAAAG+TGG | 0.542789 | 3_4:-56176083 | Msa0508310:three_prime_UTR |
| AAAACACAGCGTATCGGAGA+CGG | 0.544068 | 3_4:-56180106 | Msa0508310:CDS |
| TTTAAAGCCAATGGAGGATG+CGG | 0.547215 | 3_4:-56177242 | Msa0508310:CDS |
| ATTCATGCTGGGAAGCCTAA+AGG | 0.548804 | 3_4:-56178208 | Msa0508310:CDS |
| ATGTTACTTCATTCAATCCA+AGG | 0.549197 | 3_4:-56180335 | Msa0508310:five_prime_UTR |
| GCCAGCTCCGGAACAGAAAG+CGG | 0.549635 | 3_4:+56176404 | None:intergenic |
| AAGTGAGTCACAGCTCGAAA+AGG | 0.551984 | 3_4:-56178131 | Msa0508310:CDS |
| CCAGCTCCGGAACAGAAAGC+GGG | 0.556338 | 3_4:+56176405 | None:intergenic |
| GCTTAATTGCTATTCATGCT+GGG | 0.557069 | 3_4:-56178219 | Msa0508310:CDS |
| CTTCAATCAGAAAGCTTCTG+AGG | 0.557081 | 3_4:+56180013 | None:intergenic |
| TGATAAAGCTCCTTTATCTC+CGG | 0.557185 | 3_4:+56180075 | None:intergenic |
| TAGTACCGCCTCTCAAACTA+GGG | 0.558608 | 3_4:+56178445 | None:intergenic |
| TGAAGATGATCTTAAGGAGG+AGG | 0.558834 | 3_4:-56178296 | Msa0508310:CDS |
| ACAATGGTAAACTCATATCT+TGG | 0.558961 | 3_4:+56179183 | None:intergenic |
| CTTTAGGTGAGGAAGAAGCT+TGG | 0.561320 | 3_4:-56178479 | Msa0508310:CDS |
| CGGATATTCAGACGCAACGA+AGG | 0.561402 | 3_4:+56178843 | None:intergenic |
| CCCACGTTGGACATGGCACA+TGG | 0.561580 | 3_4:+56180309 | None:intergenic |
| TAATGGATTATAATTTGATG+AGG | 0.561590 | 3_4:+56177608 | None:intergenic |
| GTGGATGCATGGAGCTCAGA+TGG | 0.561990 | 3_4:-56177580 | Msa0508310:CDS |
| ACCCCAGTGGAAGGTAAAAG+AGG | 0.562878 | 3_4:+56179883 | None:intergenic |
| ACATCATCCTTAGAGTCATT+AGG | 0.562946 | 3_4:+56179032 | None:intergenic |
| TGCAAGATGGTGATGACACT+TGG | 0.566067 | 3_4:+56176156 | None:intergenic |
| CCTGTGTGGGAACTAAGAAA+GGG | 0.567649 | 3_4:-56176311 | Msa0508310:CDS |
| TCCTGATCTTCAGGCCAAAG+TGG | 0.568046 | 3_4:-56178791 | Msa0508310:CDS |
| CATCGTTACTCCGATGAAGG+CGG | 0.573076 | 3_4:-56180054 | Msa0508310:CDS |
| ATCTCCAGACTTCTATGCAA+GGG | 0.579812 | 3_4:-56176937 | Msa0508310:intron |
| CCCTTTCTTAGTTCCCACAC+AGG | 0.581225 | 3_4:+56176311 | None:intergenic |
| GCTTCAAGGTACTCCTTAGG+CGG | 0.582171 | 3_4:+56178543 | None:intergenic |
| AGATCTCTTTGGTTGATGCA+AGG | 0.584104 | 3_4:-56177269 | Msa0508310:CDS |
| GTGATGACACTTGGCCAAGA+GGG | 0.584450 | 3_4:+56176165 | None:intergenic |
| CTGAAGTGCTTCGATGATGG+GGG | 0.585163 | 3_4:+56179088 | None:intergenic |
| GTCACTGTATATATGGGAGA+AGG | 0.587116 | 3_4:-56177002 | Msa0508310:CDS |
| TCAAATACCTCATTCCAAGA+AGG | 0.587279 | 3_4:+56176431 | None:intergenic |
| CATCTCCAGACTTCTATGCA+AGG | 0.588070 | 3_4:-56176938 | Msa0508310:CDS |
| AAATTCCTTCAAGGTTTCTG+AGG | 0.588145 | 3_4:+56178611 | None:intergenic |
| AAACATTTGATAAGTGGCAC+AGG | 0.590787 | 3_4:+56178886 | None:intergenic |
| AAGAGGATTACCCCAGTGGA+AGG | 0.591185 | 3_4:+56179874 | None:intergenic |
| GACCTGTTTGGGACCCACGT+TGG | 0.593100 | 3_4:+56180296 | None:intergenic |
| GGAGGAAGATTCCGATGAAG+CGG | 0.594226 | 3_4:-56178278 | Msa0508310:CDS |
| GTTCCATTACATTCCCGCGA+AGG | 0.594715 | 3_4:-56176278 | Msa0508310:CDS |
| GGTAAACTTACATTCCATGA+AGG | 0.597062 | 3_4:+56179003 | None:intergenic |
| AGTTAGATATGAATTATGAC+CGG | 0.599354 | 3_4:+56179142 | None:intergenic |
| TTCTATCTTTAGCAAAACAG+TGG | 0.603639 | 3_4:-56178325 | Msa0508310:intron |
| GAAGGGAAAGCCTTTAGGTG+AGG | 0.605224 | 3_4:-56178490 | Msa0508310:CDS |
| GAAAAGGAGGAATCACAGAA+GGG | 0.605582 | 3_4:-56178507 | Msa0508310:CDS |
| CGATGAAGATGATCTTAAGG+AGG | 0.606898 | 3_4:-56178299 | Msa0508310:CDS |
| AAAGAAGTCCCTAGTTTGAG+AGG | 0.608524 | 3_4:-56178453 | Msa0508310:CDS |
| AATATGTAATAATGTGACAA+TGG | 0.610020 | 3_4:+56179167 | None:intergenic |
| TGGAACTTAAAGATGCAAGA+TGG | 0.627322 | 3_4:+56176143 | None:intergenic |
| CTGTATATATGGGAGAAGGA+TGG | 0.631132 | 3_4:-56176998 | Msa0508310:CDS |
| ACAAACATGCTTACCTGTGT+GGG | 0.631770 | 3_4:-56176324 | Msa0508310:CDS |
| TGAATATGACATGTCTGAGA+AGG | 0.639315 | 3_4:-56176360 | Msa0508310:CDS |
| TAAAGCTCCTTTATCTCCGG+CGG | 0.645354 | 3_4:+56180078 | None:intergenic |
| TTAGGTGAGGAAGAAGCTTG+GGG | 0.646891 | 3_4:-56178477 | Msa0508310:CDS |
| GCCATGTGCCATGTCCAACG+TGG | 0.648375 | 3_4:-56180310 | Msa0508310:five_prime_UTR |
| GGTGATGACACTTGGCCAAG+AGG | 0.656047 | 3_4:+56176164 | None:intergenic |
| AATAGTGGAATGTCTCAAAG+TGG | 0.664523 | 3_4:-56178182 | Msa0508310:CDS |
| GACAAACATGCTTACCTGTG+TGG | 0.665048 | 3_4:-56176325 | Msa0508310:CDS |
| CCAGTGGAAGGTAAAAGAGG+AGG | 0.668421 | 3_4:+56179886 | None:intergenic |
| CCATGTGCCATGTCCAACGT+GGG | 0.672668 | 3_4:-56180309 | Msa0508310:five_prime_UTR |
| CCTGAAGATCAGGAGTAAGG+TGG | 0.674793 | 3_4:+56178800 | None:intergenic |
| GGAATGTTTAAAGCCAATGG+AGG | 0.677096 | 3_4:-56177248 | Msa0508310:CDS |
| CATGCTGGGAAGCCTAAAGG+TGG | 0.677747 | 3_4:-56178205 | Msa0508310:CDS |
| ATATTGCGAGTGTATCCGAA+AGG | 0.679225 | 3_4:-56177642 | Msa0508310:CDS |
| GAAGTCCCTAGTTTGAGAGG+CGG | 0.688180 | 3_4:-56178450 | Msa0508310:CDS |
| ACACAGCGTATCGGAGACGG+AGG | 0.693737 | 3_4:-56180103 | Msa0508310:CDS |
| GTAAAAGAGGATTACCCCAG+TGG | 0.701192 | 3_4:+56179870 | None:intergenic |
| ATCATCGAAGCACTTCAGAG+AGG | 0.734048 | 3_4:-56179083 | Msa0508310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGATAAATCAATTTT+GGG | + | chr3_4:56177010-56177029 | None:intergenic | 10.0% |
| !!! | ATTTTTAGATAAATCAATTT+TGG | + | chr3_4:56177011-56177030 | None:intergenic | 10.0% |
| !! | ATTAAATATTATTTAATGGA+CGG | - | chr3_4:56178612-56178631 | Msa0508310:CDS | 10.0% |
| !! | TAAAATTCAATGAAATACTA+AGG | + | chr3_4:56176042-56176061 | None:intergenic | 15.0% |
| !!! | TTTTAGATAAATCAATTTTG+GGG | + | chr3_4:56177009-56177028 | None:intergenic | 15.0% |
| !! | TCAAATCTATAAATTATGTT+TGG | + | chr3_4:56177035-56177054 | None:intergenic | 15.0% |
| !! | AATGTTGTATATAAATTGAA+AGG | - | chr3_4:56178048-56178067 | Msa0508310:intron | 15.0% |
| !! | TTTGATTATGAGTTATTAAA+CGG | + | chr3_4:56178539-56178558 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCCATTAAT+TGG | - | chr3_4:56178838-56178857 | Msa0508310:CDS | 15.0% |
| !! | CAAATTATAATCCATTAATT+GGG | - | chr3_4:56178839-56178858 | Msa0508310:CDS | 15.0% |
| !!! | TAAGATTTAAGATGATTTAT+GGG | - | chr3_4:56179532-56179551 | Msa0508310:intron | 15.0% |
| !! | TCAAATAAAATAATTCATAC+AGG | + | chr3_4:56179558-56179577 | None:intergenic | 15.0% |
| !!! | TAATTTTTTATGGAAAAATG+TGG | + | chr3_4:56180473-56180492 | None:intergenic | 15.0% |
| !!! | GTCATGAGTTAATTATTTTT+TGG | + | chr3_4:56176081-56176100 | None:intergenic | 20.0% |
| !!! | AATTCTGAAGAAATATTGTT+GGG | + | chr3_4:56176170-56176189 | None:intergenic | 20.0% |
| !!! | AAATTCTGAAGAAATATTGT+TGG | + | chr3_4:56176171-56176190 | None:intergenic | 20.0% |
| !!! | ATTTAATTTAAAAGCCAACA+AGG | + | chr3_4:56176596-56176615 | None:intergenic | 20.0% |
| !!! | GTAATTTTTATGAACTATGT+TGG | - | chr3_4:56177196-56177215 | Msa0508310:CDS | 20.0% |
| !! | AATATGTAATAATGTGACAA+TGG | + | chr3_4:56177277-56177296 | None:intergenic | 20.0% |
| !! | TATCTCATATTTCTTTAATC+CGG | + | chr3_4:56178466-56178485 | None:intergenic | 20.0% |
| !!! | TAATGGATTATAATTTGATG+AGG | + | chr3_4:56178836-56178855 | None:intergenic | 20.0% |
| !!! | ATGATAAATTATTTTTGCTG+TGG | - | chr3_4:56179125-56179144 | Msa0508310:CDS | 20.0% |
| !!! | TGATAAATTATTTTTGCTGT+GGG | - | chr3_4:56179126-56179145 | Msa0508310:CDS | 20.0% |
| !!! | CTAAGATTTAAGATGATTTA+TGG | - | chr3_4:56179531-56179550 | Msa0508310:intron | 20.0% |
| !!! | TTTTCATAACAGTATCAAAA+GGG | + | chr3_4:56179961-56179980 | None:intergenic | 20.0% |
| !!! | TTTTTCATAACAGTATCAAA+AGG | + | chr3_4:56179962-56179981 | None:intergenic | 20.0% |
| !! | CATGATAATAGATAATAAAG+TGG | - | chr3_4:56180358-56180377 | Msa0508310:five_prime_UTR | 20.0% |
| ! | ATACATGCTATTAAAGGATT+TGG | - | chr3_4:56175996-56176015 | Msa0508310:intron | 25.0% |
| !! | GAATTTTCTGTGCTTATTAT+AGG | - | chr3_4:56176185-56176204 | Msa0508310:three_prime_UTR | 25.0% |
| ! | AATTTGTGTGTTAGAATCAA+AGG | - | chr3_4:56176945-56176964 | Msa0508310:CDS | 25.0% |
| !!! | TTATAGATTTGAGTTGCTTT+TGG | - | chr3_4:56177043-56177062 | Msa0508310:intron | 25.0% |
| ! | TTAATAATTCAACACTCAAG+TGG | + | chr3_4:56177163-56177182 | None:intergenic | 25.0% |
| ! | TCACATTATTACATATTCAC+CGG | - | chr3_4:56177280-56177299 | Msa0508310:CDS | 25.0% |
| ! | AGTTAGATATGAATTATGAC+CGG | + | chr3_4:56177302-56177321 | None:intergenic | 25.0% |
| ! | TGTTGGAGATATAATTCAAA+CGG | + | chr3_4:56177462-56177481 | None:intergenic | 25.0% |
| ! | ATAAATTCTCGTCAAATTGT+TGG | + | chr3_4:56177479-56177498 | None:intergenic | 25.0% |
| ! | GTTGTCATTAGTAAAATACA+TGG | + | chr3_4:56177502-56177521 | None:intergenic | 25.0% |
| !! | AACCATCTAAAATTTGAACA+GGG | + | chr3_4:56177776-56177795 | None:intergenic | 25.0% |
| !! | TAACCATCTAAAATTTGAAC+AGG | + | chr3_4:56177777-56177796 | None:intergenic | 25.0% |
| !!! | ATCCTTTTTTTAAGTGAATC+AGG | + | chr3_4:56177862-56177881 | None:intergenic | 25.0% |
| !! | TCTAATTTTGTATGTGAGAT+TGG | - | chr3_4:56178074-56178093 | Msa0508310:intron | 25.0% |
| !! | TATAATTTTACCTGTTGCAT+TGG | - | chr3_4:56178414-56178433 | Msa0508310:intron | 25.0% |
| !! | TTCAATGCTTTTATTGTTAC+CGG | - | chr3_4:56178444-56178463 | Msa0508310:CDS | 25.0% |
| ! | ATGAGATAAATATTTGTCCT+TGG | - | chr3_4:56178478-56178497 | Msa0508310:CDS | 25.0% |
| ! | TTTCCAACTTGACAAAATAA+CGG | - | chr3_4:56178575-56178594 | Msa0508310:CDS | 25.0% |
| ! | CATTTATATTCAATCAGCTT+TGG | - | chr3_4:56178687-56178706 | Msa0508310:intron | 25.0% |
| ! | ATTATAATCCATTAATTGGG+TGG | - | chr3_4:56178842-56178861 | Msa0508310:CDS | 25.0% |
| !! | TTTTGTCTTGAATTTCTCTT+TGG | - | chr3_4:56179029-56179048 | Msa0508310:CDS | 25.0% |
| !! | TGCTTTTCTTACTCTTAATT+AGG | - | chr3_4:56179417-56179436 | Msa0508310:intron | 25.0% |
| ! | TAATTAGGTCACTGTATATA+TGG | - | chr3_4:56179432-56179451 | Msa0508310:intron | 25.0% |
| ! | AATTAGGTCACTGTATATAT+GGG | - | chr3_4:56179433-56179452 | Msa0508310:intron | 25.0% |
| ! | AATATATGGATGCTATAACT+TGG | + | chr3_4:56179818-56179837 | None:intergenic | 25.0% |
| ! | GGAAGAGTTTGAAAAATATA+TGG | + | chr3_4:56179832-56179851 | None:intergenic | 25.0% |
| ! | AATAAGTGATAACTTCTCTT+CGG | - | chr3_4:56179876-56179895 | Msa0508310:intron | 25.0% |
| ! | TAATTGATAAACTCTTATGC+AGG | - | chr3_4:56179919-56179938 | Msa0508310:CDS | 25.0% |
| GCAATCATACATGCTATTAA+AGG | - | chr3_4:56175990-56176009 | Msa0508310:intron | 30.0% | |
| ! | ATGTTACTTCATTCAATCCA+AGG | - | chr3_4:56176106-56176125 | Msa0508310:three_prime_UTR | 30.0% |
| ! | AGTGACAAAATTGGTTTAAG+AGG | - | chr3_4:56176672-56176691 | Msa0508310:intron | 30.0% |
| !! | CTCGCTTTTAAGTGTATATT+TGG | - | chr3_4:56176798-56176817 | Msa0508310:intron | 30.0% |
| !! | ATCTACAACTCACTTTTAGT+CGG | + | chr3_4:56176876-56176895 | None:intergenic | 30.0% |
| ! | TAGATAAAGTGCTTTGTGTT+TGG | - | chr3_4:56176891-56176910 | Msa0508310:intron | 30.0% |
| AATCAAAGGCTACAAATAGT+AGG | - | chr3_4:56176959-56176978 | Msa0508310:CDS | 30.0% | |
| ACAATGGTAAACTCATATCT+TGG | + | chr3_4:56177261-56177280 | None:intergenic | 30.0% | |
| GGTCATAATTCATATCTAAC+TGG | - | chr3_4:56177301-56177320 | Msa0508310:intron | 30.0% | |
| GAGTGATTGAATTGGATATA+TGG | - | chr3_4:56177386-56177405 | Msa0508310:intron | 30.0% | |
| ACAAAATGATGCAATCTTAC+AGG | - | chr3_4:56177520-56177539 | Msa0508310:intron | 30.0% | |
| CAAATGTTTGACGTCTATTA+AGG | - | chr3_4:56177569-56177588 | Msa0508310:CDS | 30.0% | |
| !! | TCTTCTAAGGTTATTACAAC+CGG | + | chr3_4:56177621-56177640 | None:intergenic | 30.0% |
| TAGATGGTTACTCAAACATT+TGG | - | chr3_4:56177787-56177806 | Msa0508310:intron | 30.0% | |
| CACCTGATTCACTTAAAAAA+AGG | - | chr3_4:56177857-56177876 | Msa0508310:intron | 30.0% | |
| AGCTAAAGAAGAAAAGGAAA+AGG | - | chr3_4:56177918-56177937 | Msa0508310:intron | 30.0% | |
| TAAAGAAGAAAAGGAAAAGG+AGG | - | chr3_4:56177921-56177940 | Msa0508310:intron | 30.0% | |
| ! | ATTTTGTATGTGAGATTGGT+TGG | - | chr3_4:56178078-56178097 | Msa0508310:intron | 30.0% |
| TTCTATCTTTAGCAAAACAG+TGG | - | chr3_4:56178116-56178135 | Msa0508310:CDS | 30.0% | |
| CATATGGAAAAGAAATTGTC+AGG | - | chr3_4:56178342-56178361 | Msa0508310:intron | 30.0% | |
| TAAATATTTGTCCTTGGCAA+TGG | - | chr3_4:56178484-56178503 | Msa0508310:CDS | 30.0% | |
| !! | TTTCCGTTATTTTGTCAAGT+TGG | + | chr3_4:56178581-56178600 | None:intergenic | 30.0% |
| ! | TTAATGGACGGAAATGATAT+CGG | - | chr3_4:56178624-56178643 | Msa0508310:CDS | 30.0% |
| TATATAACAAGAAACCTGTG+AGG | - | chr3_4:56178931-56178950 | Msa0508310:intron | 30.0% | |
| ACGGCTACTAATTGAAAATT+TGG | - | chr3_4:56178960-56178979 | Msa0508310:intron | 30.0% | |
| CGGCTACTAATTGAAAATTT+GGG | - | chr3_4:56178961-56178980 | Msa0508310:intron | 30.0% | |
| GGCTACTAATTGAAAATTTG+GGG | - | chr3_4:56178962-56178981 | Msa0508310:intron | 30.0% | |
| !!! | TAAATTATTTTTGCTGTGGG+TGG | - | chr3_4:56179129-56179148 | Msa0508310:CDS | 30.0% |
| ! | CCAGTTTTCAATAGAAAATC+AGG | + | chr3_4:56179238-56179257 | None:intergenic | 30.0% |
| ! | CCTGATTTTCTATTGAAAAC+TGG | - | chr3_4:56179235-56179254 | Msa0508310:intron | 30.0% |
| ! | ACCTTCAAAGTAGTTTTTGA+TGG | + | chr3_4:56179298-56179317 | None:intergenic | 30.0% |
| ! | TTTGAGTAGTGACTTTTACA+AGG | - | chr3_4:56179339-56179358 | Msa0508310:intron | 30.0% |
| ! | TTGAGTAGTGACTTTTACAA+GGG | - | chr3_4:56179340-56179359 | Msa0508310:intron | 30.0% |
| CTCTAGACTTGATTATAACA+AGG | - | chr3_4:56179391-56179410 | Msa0508310:intron | 30.0% | |
| ATTAAGCTGAAAACAGCTTA+TGG | + | chr3_4:56179649-56179668 | None:intergenic | 30.0% | |
| TAACTTGGAACATAACTGTT+TGG | + | chr3_4:56179803-56179822 | None:intergenic | 30.0% | |
| TTCATATCTAATAGACTGCA+AGG | + | chr3_4:56179853-56179872 | None:intergenic | 30.0% | |
| CAAAGTCAACAGATAATAGT+TGG | - | chr3_4:56179984-56180003 | Msa0508310:CDS | 30.0% | |
| GTTTATCTTAAATACCCTCT+TGG | - | chr3_4:56180262-56180281 | Msa0508310:five_prime_UTR | 30.0% | |
| ACGAGTACAAATATGTGTTA+TGG | + | chr3_4:56180321-56180340 | None:intergenic | 30.0% | |
| AAATCATGCTTGGAAAGTTA+AGG | + | chr3_4:56180390-56180409 | None:intergenic | 30.0% | |
| TGTCAAATGTAAATCATGCT+TGG | + | chr3_4:56180400-56180419 | None:intergenic | 30.0% | |
| AATATTGTTGGGACCTGTTT+GGG | + | chr3_4:56176159-56176178 | None:intergenic | 35.0% | |
| AAATATTGTTGGGACCTGTT+TGG | + | chr3_4:56176160-56176179 | None:intergenic | 35.0% | |
| TGATAAAGCTCCTTTATCTC+CGG | + | chr3_4:56176369-56176388 | None:intergenic | 35.0% | |
| AAGATCTCTACGATCAATGA+TGG | + | chr3_4:56176493-56176512 | None:intergenic | 35.0% | |
| ! | GTAATCCTCTTTTACCTTGT+TGG | - | chr3_4:56176579-56176598 | Msa0508310:intron | 35.0% |
| AAAAGCCAACAAGGTAAAAG+AGG | + | chr3_4:56176587-56176606 | None:intergenic | 35.0% | |
| ! | CAATTTTGTCACTCGAAACA+AGG | + | chr3_4:56176665-56176684 | None:intergenic | 35.0% |
| ! | CTTGTTTCGAGTGACAAAAT+TGG | - | chr3_4:56176663-56176682 | Msa0508310:intron | 35.0% |
| CATGTAACGTGGTTTATGTT+TGG | + | chr3_4:56176770-56176789 | None:intergenic | 35.0% | |
| GAGTTACATTACATGTAACG+TGG | + | chr3_4:56176781-56176800 | None:intergenic | 35.0% | |
| !! | GTGTATATTTGGTTCTGCAT+TGG | - | chr3_4:56176809-56176828 | Msa0508310:intron | 35.0% |
| !! | GCACTTGAAAAGCACTTATA+AGG | - | chr3_4:56177065-56177084 | Msa0508310:intron | 35.0% |
| ! | CTGTTTCTTTGTGTGATTTC+AGG | - | chr3_4:56177231-56177250 | Msa0508310:CDS | 35.0% |
| AGGTGTTAGAGTGATTGAAT+TGG | - | chr3_4:56177378-56177397 | Msa0508310:intron | 35.0% | |
| TATATGGCCTAATGACTCTA+AGG | - | chr3_4:56177402-56177421 | Msa0508310:intron | 35.0% | |
| ACATCATCCTTAGAGTCATT+AGG | + | chr3_4:56177412-56177431 | None:intergenic | 35.0% | |
| GGTAAACTTACATTCCATGA+AGG | + | chr3_4:56177441-56177460 | None:intergenic | 35.0% | |
| AAACATTTGATAAGTGGCAC+AGG | + | chr3_4:56177558-56177577 | None:intergenic | 35.0% | |
| GACGTCAAACATTTGATAAG+TGG | + | chr3_4:56177564-56177583 | None:intergenic | 35.0% | |
| ! | AGCCCTGTTCAAATTTTAGA+TGG | - | chr3_4:56177771-56177790 | Msa0508310:intron | 35.0% |
| AAATTCCTTCAAGGTTTCTG+AGG | + | chr3_4:56177833-56177852 | None:intergenic | 35.0% | |
| AGGTGAAAGAAATTCCTTCA+AGG | + | chr3_4:56177842-56177861 | None:intergenic | 35.0% | |
| !! | CCTTTTCTTCTTTAGCTTCA+AGG | + | chr3_4:56177915-56177934 | None:intergenic | 35.0% |
| CCTTGAAGCTAAAGAAGAAA+AGG | - | chr3_4:56177912-56177931 | Msa0508310:intron | 35.0% | |
| TGTCGATGAAGATGATCTTA+AGG | - | chr3_4:56178139-56178158 | Msa0508310:CDS | 35.0% | |
| ! | TGTAGTCATCTGATGCATTT+TGG | + | chr3_4:56178199-56178218 | None:intergenic | 35.0% |
| ! | GCTTAATTGCTATTCATGCT+GGG | - | chr3_4:56178222-56178241 | Msa0508310:CDS | 35.0% |
| ! | AATAGTGGAATGTCTCAAAG+TGG | - | chr3_4:56178259-56178278 | Msa0508310:CDS | 35.0% |
| TCTTGAATTTCTCTTTGGTG+AGG | - | chr3_4:56179034-56179053 | Msa0508310:CDS | 35.0% | |
| AATGTCTTGATACAGCTGAA+AGG | + | chr3_4:56179082-56179101 | None:intergenic | 35.0% | |
| ! | CAAGGAATGTTTAAAGCCAA+TGG | - | chr3_4:56179190-56179209 | Msa0508310:CDS | 35.0% |
| GGATCGAAAACCTCATTATT+GGG | + | chr3_4:56179262-56179281 | None:intergenic | 35.0% | |
| AGGATCGAAAACCTCATTAT+TGG | + | chr3_4:56179263-56179282 | None:intergenic | 35.0% | |
| ! | TTTGATGGCAAATGAGCTTT+AGG | + | chr3_4:56179283-56179302 | None:intergenic | 35.0% |
| GCCATCAAAAACTACTTTGA+AGG | - | chr3_4:56179294-56179313 | Msa0508310:intron | 35.0% | |
| ! | CAAAAACTACTTTGAAGGTG+AGG | - | chr3_4:56179299-56179318 | Msa0508310:intron | 35.0% |
| !! | TTCCATAAGCTCTCTAAGAT+AGG | - | chr3_4:56179668-56179687 | Msa0508310:intron | 35.0% |
| AACCTATCTTAGAGAGCTTA+TGG | + | chr3_4:56179673-56179692 | None:intergenic | 35.0% | |
| ! | ACGAAAACAGCTTTTAAGCA+AGG | - | chr3_4:56179693-56179712 | Msa0508310:intron | 35.0% |
| TGATAAACTCTTATGCAGGT+TGG | - | chr3_4:56179923-56179942 | Msa0508310:CDS | 35.0% | |
| ATAATAGTTGGTTGCCTTCT+TGG | - | chr3_4:56179996-56180015 | Msa0508310:CDS | 35.0% | |
| TCAAATACCTCATTCCAAGA+AGG | + | chr3_4:56180013-56180032 | None:intergenic | 35.0% | |
| TGAATATGACATGTCTGAGA+AGG | - | chr3_4:56180081-56180100 | Msa0508310:CDS | 35.0% | |
| ! | ATGTCTGAGAAGGATGATTT+TGG | - | chr3_4:56180091-56180110 | Msa0508310:CDS | 35.0% |
| TGTTGTATTTATCTCCTTCG+CGG | + | chr3_4:56180180-56180199 | None:intergenic | 35.0% | |
| AGCTTAGAAGTTTAGCTACT+AGG | - | chr3_4:56180240-56180259 | Msa0508310:five_prime_UTR | 35.0% | |
| TGGAACTTAAAGATGCAAGA+TGG | + | chr3_4:56180301-56180320 | None:intergenic | 35.0% | |
| ! | GACAATCAAGAGTCTTTTAG+TGG | - | chr3_4:56180416-56180435 | Msa0508310:five_prime_UTR | 35.0% |
| ACCGAAAAAACACAGCGTAT+CGG | - | chr3_4:56176329-56176348 | Msa0508310:CDS | 40.0% | |
| !!! | TCCGATACGCTGTGTTTTTT+CGG | + | chr3_4:56176333-56176352 | None:intergenic | 40.0% |
| TATCATCGTTACTCCGATGA+AGG | - | chr3_4:56176384-56176403 | Msa0508310:CDS | 40.0% | |
| CTTCAATCAGAAAGCTTCTG+AGG | + | chr3_4:56176431-56176450 | None:intergenic | 40.0% | |
| TCAACACTCAAGTGGATGTT+TGG | + | chr3_4:56177155-56177174 | None:intergenic | 40.0% | |
| GATGATGTTGATGTCCTTCA+TGG | - | chr3_4:56177424-56177443 | Msa0508310:intron | 40.0% | |
| ! | TTAGCTTCAAGGTACTCCTT+AGG | + | chr3_4:56177904-56177923 | None:intergenic | 40.0% |
| GAAAAGGAGGAATCACAGAA+GGG | - | chr3_4:56177934-56177953 | Msa0508310:intron | 40.0% | |
| TTTAGGTGAGGAAGAAGCTT+GGG | - | chr3_4:56177963-56177982 | Msa0508310:intron | 40.0% | |
| AAAGAAGTCCCTAGTTTGAG+AGG | - | chr3_4:56177988-56178007 | Msa0508310:intron | 40.0% | |
| CGGTACTATAGCTGATTACA+AGG | - | chr3_4:56178011-56178030 | Msa0508310:intron | 40.0% | |
| CGATGAAGATGATCTTAAGG+AGG | - | chr3_4:56178142-56178161 | Msa0508310:CDS | 40.0% | |
| TGAAGATGATCTTAAGGAGG+AGG | - | chr3_4:56178145-56178164 | Msa0508310:CDS | 40.0% | |
| ! | CGCTTAATTGCTATTCATGC+TGG | - | chr3_4:56178221-56178240 | Msa0508310:CDS | 40.0% |
| CATTCCACTATTCCACCTTT+AGG | + | chr3_4:56178251-56178270 | None:intergenic | 40.0% | |
| CTTAGACGTCTCACTTTATC+AGG | + | chr3_4:56178287-56178306 | None:intergenic | 40.0% | |
| GAAAAGGCTGCTGAAACATA+TGG | - | chr3_4:56178326-56178345 | Msa0508310:intron | 40.0% | |
| ATGCCATCTAAGAAGACAGT+CGG | + | chr3_4:56178515-56178534 | None:intergenic | 40.0% | |
| !! | CTTTGGAACAAACACATTGC+AGG | - | chr3_4:56178704-56178723 | Msa0508310:intron | 40.0% |
| TTGATCCTCTGATTGTTGAC+AGG | - | chr3_4:56178761-56178780 | Msa0508310:intron | 40.0% | |
| ATATTGCGAGTGTATCCGAA+AGG | - | chr3_4:56178799-56178818 | Msa0508310:CDS | 40.0% | |
| GATGGTTGCATTTAACATGC+AGG | - | chr3_4:56178879-56178898 | Msa0508310:CDS | 40.0% | |
| ! | TTTTCAATTAGTAGCCGTGC+TGG | + | chr3_4:56178958-56178977 | None:intergenic | 40.0% |
| ! | AGATCTCTTTGGTTGATGCA+AGG | - | chr3_4:56179172-56179191 | Msa0508310:CDS | 40.0% |
| ! | GGAATGTTTAAAGCCAATGG+AGG | - | chr3_4:56179193-56179212 | Msa0508310:intron | 40.0% |
| ! | TTTAAAGCCAATGGAGGATG+CGG | - | chr3_4:56179199-56179218 | Msa0508310:intron | 40.0% |
| GAAAACTGGTCCCAATAATG+AGG | - | chr3_4:56179249-56179268 | Msa0508310:intron | 40.0% | |
| CTCAAATCTCAAAGCCGTAA+AGG | + | chr3_4:56179325-56179344 | None:intergenic | 40.0% | |
| TCTAGAGACACTTGAATGAC+GGG | + | chr3_4:56179378-56179397 | None:intergenic | 40.0% | |
| GTCTAGAGACACTTGAATGA+CGG | + | chr3_4:56179379-56179398 | None:intergenic | 40.0% | |
| GTCACTGTATATATGGGAGA+AGG | - | chr3_4:56179439-56179458 | Msa0508310:intron | 40.0% | |
| CTGTATATATGGGAGAAGGA+TGG | - | chr3_4:56179443-56179462 | Msa0508310:intron | 40.0% | |
| ATCTCCAGACTTCTATGCAA+GGG | - | chr3_4:56179504-56179523 | Msa0508310:intron | 40.0% | |
| ! | TCTGAGAAGGATGATTTTGG+TGG | - | chr3_4:56180094-56180113 | Msa0508310:CDS | 40.0% |
| ACAAACATGCTTACCTGTGT+GGG | - | chr3_4:56180117-56180136 | Msa0508310:CDS | 40.0% | |
| GTTGTATTTATCTCCTTCGC+GGG | + | chr3_4:56180179-56180198 | None:intergenic | 40.0% | |
| AAAACACAGCGTATCGGAGA+CGG | - | chr3_4:56176335-56176354 | Msa0508310:CDS | 45.0% | |
| TAAAGCTCCTTTATCTCCGG+CGG | + | chr3_4:56176366-56176385 | None:intergenic | 45.0% | |
| ! | CTCCTCTTTTACCTTCCACT+GGG | - | chr3_4:56176556-56176575 | Msa0508310:intron | 45.0% |
| ! | TCCTCTTTTACCTTCCACTG+GGG | - | chr3_4:56176557-56176576 | Msa0508310:intron | 45.0% |
| GTAAAAGAGGATTACCCCAG+TGG | + | chr3_4:56176574-56176593 | None:intergenic | 45.0% | |
| CAAGTGGATGTTTGGATCTG+CGG | + | chr3_4:56177147-56177166 | None:intergenic | 45.0% | |
| ! | TCTGAAGTGCTTCGATGATG+GGG | + | chr3_4:56177357-56177376 | None:intergenic | 45.0% |
| !! | CTCTGAAGTGCTTCGATGAT+GGG | + | chr3_4:56177358-56177377 | None:intergenic | 45.0% |
| !! | TCTCTGAAGTGCTTCGATGA+TGG | + | chr3_4:56177359-56177378 | None:intergenic | 45.0% |
| ! | ATCATCGAAGCACTTCAGAG+AGG | - | chr3_4:56177358-56177377 | Msa0508310:intron | 45.0% |
| CTTCGTTGCGTCTGAATATC+CGG | - | chr3_4:56177599-56177618 | Msa0508310:CDS | 45.0% | |
| AGGAGTAAGGTGGTCTTCTA+AGG | + | chr3_4:56177634-56177653 | None:intergenic | 45.0% | |
| CTAACTAACCTGAGCCACTT+TGG | + | chr3_4:56177667-56177686 | None:intergenic | 45.0% | |
| ! | AGTGGCTCAGGTTAGTTAGT+TGG | - | chr3_4:56177668-56177687 | Msa0508310:intron | 45.0% |
| TCCTACCTCAGAAACCTTGA+AGG | - | chr3_4:56177825-56177844 | Msa0508310:intron | 45.0% | |
| !! | TCCTTCAAGGTTTCTGAGGT+AGG | + | chr3_4:56177829-56177848 | None:intergenic | 45.0% |
| GGAAAAGGAGGAATCACAGA+AGG | - | chr3_4:56177933-56177952 | Msa0508310:intron | 45.0% | |
| TCACAGAAGGGAAAGCCTTT+AGG | - | chr3_4:56177946-56177965 | Msa0508310:intron | 45.0% | |
| CAAGCTTCTTCCTCACCTAA+AGG | + | chr3_4:56177964-56177983 | None:intergenic | 45.0% | |
| CTTTAGGTGAGGAAGAAGCT+TGG | - | chr3_4:56177962-56177981 | Msa0508310:intron | 45.0% | |
| TTAGGTGAGGAAGAAGCTTG+GGG | - | chr3_4:56177964-56177983 | Msa0508310:intron | 45.0% | |
| TAGTACCGCCTCTCAAACTA+GGG | + | chr3_4:56177999-56178018 | None:intergenic | 45.0% | |
| ATAGTACCGCCTCTCAAACT+AGG | + | chr3_4:56178000-56178019 | None:intergenic | 45.0% | |
| AGATTCCGATGAAGCGGAAA+AGG | - | chr3_4:56178169-56178188 | Msa0508310:CDS | 45.0% | |
| ATTCATGCTGGGAAGCCTAA+AGG | - | chr3_4:56178233-56178252 | Msa0508310:CDS | 45.0% | |
| GAAGCCTAAAGGTGGAATAG+TGG | - | chr3_4:56178244-56178263 | Msa0508310:CDS | 45.0% | |
| AAGTGAGTCACAGCTCGAAA+AGG | - | chr3_4:56178310-56178329 | Msa0508310:CDS | 45.0% | |
| GAATCAAGAGCCAATGCAAC+AGG | + | chr3_4:56178427-56178446 | None:intergenic | 45.0% | |
| ! | TCACCGACTGTCTTCTTAGA+TGG | - | chr3_4:56178509-56178528 | Msa0508310:CDS | 45.0% |
| TGGACGGAAATGATATCGGA+CGG | - | chr3_4:56178628-56178647 | Msa0508310:CDS | 45.0% | |
| GTGAACCTGTCAACAATCAG+AGG | + | chr3_4:56178769-56178788 | None:intergenic | 45.0% | |
| GAGGTAATGCGTGTACCTTT+CGG | + | chr3_4:56178817-56178836 | None:intergenic | 45.0% | |
| CCATGCATCCACCCAATTAA+TGG | + | chr3_4:56178853-56178872 | None:intergenic | 45.0% | |
| CCATTAATTGGGTGGATGCA+TGG | - | chr3_4:56178850-56178869 | Msa0508310:CDS | 45.0% | |
| !! | TTTTGCTGTGGGTGGTTCTT+TGG | - | chr3_4:56179137-56179156 | Msa0508310:CDS | 45.0% |
| TGGTTCTTTGGCAGGGTTAT+GGG | - | chr3_4:56179149-56179168 | Msa0508310:CDS | 45.0% | |
| AGGGTTATGGGAGATCTCTT+TGG | - | chr3_4:56179161-56179180 | Msa0508310:CDS | 45.0% | |
| AACAAAACCGCATCCTCCAT+TGG | + | chr3_4:56179209-56179228 | None:intergenic | 45.0% | |
| ! | CTTTGAAGGTGAGGCCTTTA+CGG | - | chr3_4:56179308-56179327 | Msa0508310:intron | 45.0% |
| CATCTCCAGACTTCTATGCA+AGG | - | chr3_4:56179503-56179522 | Msa0508310:intron | 45.0% | |
| CATACCCTTGCATAGAAGTC+TGG | + | chr3_4:56179511-56179530 | None:intergenic | 45.0% | |
| ! | CTTATGCAGGTTGGAATTGC+TGG | - | chr3_4:56179932-56179951 | Msa0508310:CDS | 45.0% |
| TTGGTTGCCTTCTTGGAATG+AGG | - | chr3_4:56180003-56180022 | Msa0508310:CDS | 45.0% | |
| TGAATTCCCGCTTTCTGTTC+CGG | - | chr3_4:56180030-56180049 | Msa0508310:CDS | 45.0% | |
| GACAAACATGCTTACCTGTG+TGG | - | chr3_4:56180116-56180135 | Msa0508310:CDS | 45.0% | |
| ACCTGTGTGGGAACTAAGAA+AGG | - | chr3_4:56180129-56180148 | Msa0508310:exon | 45.0% | |
| CCTGTGTGGGAACTAAGAAA+GGG | - | chr3_4:56180130-56180149 | Msa0508310:exon | 45.0% | |
| ! | TGCAAGATGGTGATGACACT+TGG | + | chr3_4:56180288-56180307 | None:intergenic | 45.0% |
| !! | AGTAATTAAATATTATTTAA+TGG | - | chr3_4:56178608-56178627 | Msa0508310:CDS | 5.0% |
| CATCGTTACTCCGATGAAGG+CGG | - | chr3_4:56176387-56176406 | Msa0508310:CDS | 50.0% | |
| ATCGTTACTCCGATGAAGGC+GGG | - | chr3_4:56176388-56176407 | Msa0508310:CDS | 50.0% | |
| TGTCATGATCCCGCCTTCAT+CGG | + | chr3_4:56176400-56176419 | None:intergenic | 50.0% | |
| CCAGTGGAAGGTAAAAGAGG+AGG | + | chr3_4:56176558-56176577 | None:intergenic | 50.0% | |
| ! | CCTCCTCTTTTACCTTCCAC+TGG | - | chr3_4:56176555-56176574 | Msa0508310:intron | 50.0% |
| ACCCCAGTGGAAGGTAAAAG+AGG | + | chr3_4:56176561-56176580 | None:intergenic | 50.0% | |
| AAGAGGATTACCCCAGTGGA+AGG | + | chr3_4:56176570-56176589 | None:intergenic | 50.0% | |
| ! | TGACCTGCTTGTGTTGCTCT+TGG | - | chr3_4:56176709-56176728 | Msa0508310:intron | 50.0% |
| ! | GACCTGCTTGTGTTGCTCTT+GGG | - | chr3_4:56176710-56176729 | Msa0508310:intron | 50.0% |
| TACCCAAGAGCAACACAAGC+AGG | + | chr3_4:56176715-56176734 | None:intergenic | 50.0% | |
| ! | CTGAAGTGCTTCGATGATGG+GGG | + | chr3_4:56177356-56177375 | None:intergenic | 50.0% |
| CGGATATTCAGACGCAACGA+AGG | + | chr3_4:56177601-56177620 | None:intergenic | 50.0% | |
| CCTGAAGATCAGGAGTAAGG+TGG | + | chr3_4:56177644-56177663 | None:intergenic | 50.0% | |
| CCACCTTACTCCTGATCTTC+AGG | - | chr3_4:56177641-56177660 | Msa0508310:CDS | 50.0% | |
| TGGCCTGAAGATCAGGAGTA+AGG | + | chr3_4:56177647-56177666 | None:intergenic | 50.0% | |
| TCCTGATCTTCAGGCCAAAG+TGG | - | chr3_4:56177650-56177669 | Msa0508310:CDS | 50.0% | |
| CATATCAACCAAGCCGCCTA+AGG | - | chr3_4:56177885-56177904 | Msa0508310:intron | 50.0% | |
| ! | GCTTCAAGGTACTCCTTAGG+CGG | + | chr3_4:56177901-56177920 | None:intergenic | 50.0% |
| GAAGGGAAAGCCTTTAGGTG+AGG | - | chr3_4:56177951-56177970 | Msa0508310:intron | 50.0% | |
| GAAGTCCCTAGTTTGAGAGG+CGG | - | chr3_4:56177991-56178010 | Msa0508310:intron | 50.0% | |
| GGAGGAAGATTCCGATGAAG+CGG | - | chr3_4:56178163-56178182 | Msa0508310:CDS | 50.0% | |
| AGTCGGTGAAACCATTGCCA+AGG | + | chr3_4:56178498-56178517 | None:intergenic | 50.0% | |
| GTGGTTCTTTGGCAGGGTTA+TGG | - | chr3_4:56179148-56179167 | Msa0508310:CDS | 50.0% | |
| CCCTTTCTTAGTTCCCACAC+AGG | + | chr3_4:56180133-56180152 | None:intergenic | 50.0% | |
| GTTCCATTACATTCCCGCGA+AGG | - | chr3_4:56180163-56180182 | Msa0508310:five_prime_UTR | 50.0% | |
| TCTCCTTCGCGGGAATGTAA+TGG | + | chr3_4:56180169-56180188 | None:intergenic | 50.0% | |
| GTGATGACACTTGGCCAAGA+GGG | + | chr3_4:56180279-56180298 | None:intergenic | 50.0% | |
| GACATGGCACATGGCATCCT+TGG | + | chr3_4:56176126-56176145 | None:intergenic | 55.0% | |
| CCATGTGCCATGTCCAACGT+GGG | - | chr3_4:56176132-56176151 | Msa0508310:three_prime_UTR | 55.0% | |
| ! | TTTGGGACCCACGTTGGACA+TGG | + | chr3_4:56176142-56176161 | None:intergenic | 55.0% |
| ! | GCCACTTTGGCCTGAAGATC+AGG | + | chr3_4:56177654-56177673 | None:intergenic | 55.0% |
| TCTTCAGGCCAAAGTGGCTC+AGG | - | chr3_4:56177656-56177675 | Msa0508310:CDS | 55.0% | |
| ! | AAGGTACTCCTTAGGCGGCT+TGG | + | chr3_4:56177896-56177915 | None:intergenic | 55.0% |
| ! | GCGTGCCTTTTCCGCTTCAT+CGG | + | chr3_4:56178177-56178196 | None:intergenic | 55.0% |
| CATGCTGGGAAGCCTAAAGG+TGG | - | chr3_4:56178236-56178255 | Msa0508310:CDS | 55.0% | |
| GTGGATGCATGGAGCTCAGA+TGG | - | chr3_4:56178861-56178880 | Msa0508310:CDS | 55.0% | |
| GAAACCTGTGAGGTCCAGCA+CGG | - | chr3_4:56178941-56178960 | Msa0508310:intron | 55.0% | |
| CTGTGGGTGGTTCTTTGGCA+GGG | - | chr3_4:56179142-56179161 | Msa0508310:CDS | 55.0% | |
| GGTGATGACACTTGGCCAAG+AGG | + | chr3_4:56180280-56180299 | None:intergenic | 55.0% | |
| GCCATGTGCCATGTCCAACG+TGG | - | chr3_4:56176131-56176150 | Msa0508310:three_prime_UTR | 60.0% | |
| CCCACGTTGGACATGGCACA+TGG | + | chr3_4:56176135-56176154 | None:intergenic | 60.0% | |
| GTCCAACGTGGGTCCCAAAC+AGG | - | chr3_4:56176143-56176162 | Msa0508310:three_prime_UTR | 60.0% | |
| ! | GACCTGTTTGGGACCCACGT+TGG | + | chr3_4:56176148-56176167 | None:intergenic | 60.0% |
| ACACAGCGTATCGGAGACGG+AGG | - | chr3_4:56176338-56176357 | Msa0508310:CDS | 60.0% | |
| GCTGTGGGTGGTTCTTTGGC+AGG | - | chr3_4:56179141-56179160 | Msa0508310:CDS | 60.0% | |
| CCAGCTCCGGAACAGAAAGC+GGG | + | chr3_4:56180039-56180058 | None:intergenic | 60.0% | |
| GCCAGCTCCGGAACAGAAAG+CGG | + | chr3_4:56180040-56180059 | None:intergenic | 60.0% | |
| !! | GGAGGCACCGCCGGAGATAA+AGG | - | chr3_4:56176356-56176375 | Msa0508310:CDS | 65.0% |
| GTAGCCGTGCTGGACCTCAC+AGG | + | chr3_4:56178948-56178967 | None:intergenic | 65.0% | |
| CCCGCTTTCTGTTCCGGAGC+TGG | - | chr3_4:56180036-56180055 | Msa0508310:CDS | 65.0% | |
| ATGCGAAGCAGCGCCAGCTC+CGG | + | chr3_4:56180052-56180071 | None:intergenic | 65.0% | |
| !! | ATCGGAGACGGAGGCACCGC+CGG | - | chr3_4:56176347-56176366 | Msa0508310:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 56175971 | 56180492 | 56175971 | ID=Msa0508310;Name=Msa0508310 |
| chr3_4 | mRNA | 56175971 | 56180492 | 56175971 | ID=Msa0508310-mRNA-1;Parent=Msa0508310;Name=Msa0508310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=347|1|1|1|0.88|0.8|10|236|574 |
| chr3_4 | exon | 56175971 | 56175998 | 56175971 | ID=Msa0508310-mRNA-1:exon:12653;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56176021 | 56176522 | 56176021 | ID=Msa0508310-mRNA-1:exon:12652;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56176938 | 56177024 | 56176938 | ID=Msa0508310-mRNA-1:exon:12651;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56177148 | 56177300 | 56177148 | ID=Msa0508310-mRNA-1:exon:12650;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56177563 | 56177680 | 56177563 | ID=Msa0508310-mRNA-1:exon:12649;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56178100 | 56178335 | 56178100 | ID=Msa0508310-mRNA-1:exon:12648;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56178431 | 56178673 | 56178431 | ID=Msa0508310-mRNA-1:exon:12647;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56178786 | 56178921 | 56178786 | ID=Msa0508310-mRNA-1:exon:12646;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56179014 | 56179210 | 56179014 | ID=Msa0508310-mRNA-1:exon:12645;Parent=Msa0508310-mRNA-1 |
| chr3_4 | exon | 56179885 | 56180492 | 56179885 | ID=Msa0508310-mRNA-1:exon:12644;Parent=Msa0508310-mRNA-1 |
| chr3_4 | five_prime_UTR | 56180146 | 56180492 | 56180146 | ID=Msa0508310-mRNA-1:five_prime_utr;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56179885 | 56180145 | 56179885 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56179014 | 56179210 | 56179014 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56178786 | 56178921 | 56178786 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56178431 | 56178673 | 56178431 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56178100 | 56178335 | 56178100 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56177563 | 56177680 | 56177563 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56177148 | 56177300 | 56177148 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56176938 | 56177024 | 56176938 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | CDS | 56176229 | 56176522 | 56176229 | ID=Msa0508310-mRNA-1:cds;Parent=Msa0508310-mRNA-1 |
| chr3_4 | three_prime_UTR | 56176021 | 56176228 | 56176021 | ID=Msa0508310-mRNA-1:three_prime_utr;Parent=Msa0508310-mRNA-1 |
| chr3_4 | three_prime_UTR | 56175971 | 56175998 | 56175971 | ID=Msa0508310-mRNA-1:three_prime_utr;Parent=Msa0508310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
