Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463670 | XP_003600972.1 | 99.375 | 160 | 0 | 1 | 5 | 164 | 1 | 159 | 4.42e-113 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463670 | sp|Q8LBW3|LBD12_ARATH | 79.259 | 135 | 22 | 2 | 5 | 135 | 1 | 133 | 1.80e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463670 | G7J2B8 | 99.375 | 160 | 0 | 1 | 5 | 164 | 1 | 159 | 2.11e-113 | 327 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0463670 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0463670 | Msa0509170 | 0.805904 | 1.065670e-49 | -8.615850e-47 |
| Msa0463670 | Msa0549870 | 0.802750 | 4.837218e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463670 | MtrunA17_Chr3g0114061 | 99.375 | 160 | 0 | 1 | 5 | 164 | 1 | 159 | 4.07e-117 | 327 |
| Msa0463670 | MtrunA17_Chr5g0437571 | 75.155 | 161 | 32 | 4 | 5 | 161 | 1 | 157 | 3.84e-81 | 237 |
| Msa0463670 | MtrunA17_Chr3g0106101 | 65.359 | 153 | 41 | 1 | 7 | 147 | 2 | 154 | 5.71e-70 | 209 |
| Msa0463670 | MtrunA17_Chr2g0311601 | 76.364 | 110 | 26 | 0 | 8 | 117 | 9 | 118 | 7.14e-59 | 180 |
| Msa0463670 | MtrunA17_Chr4g0043421 | 60.811 | 148 | 48 | 3 | 6 | 149 | 5 | 146 | 3.97e-57 | 176 |
| Msa0463670 | MtrunA17_Chr4g0030001 | 65.179 | 112 | 38 | 1 | 11 | 121 | 23 | 134 | 8.79e-50 | 158 |
| Msa0463670 | MtrunA17_Chr1g0200201 | 71.287 | 101 | 29 | 0 | 13 | 113 | 73 | 173 | 1.43e-48 | 156 |
| Msa0463670 | MtrunA17_Chr5g0438091 | 67.619 | 105 | 34 | 0 | 8 | 112 | 35 | 139 | 6.05e-48 | 154 |
| Msa0463670 | MtrunA17_Chr3g0129071 | 63.393 | 112 | 41 | 0 | 8 | 119 | 43 | 154 | 4.32e-47 | 153 |
| Msa0463670 | MtrunA17_Chr7g0227511 | 59.829 | 117 | 43 | 1 | 9 | 121 | 8 | 124 | 3.64e-46 | 148 |
| Msa0463670 | MtrunA17_Chr6g0449651 | 50.685 | 146 | 62 | 3 | 4 | 149 | 59 | 194 | 7.43e-46 | 149 |
| Msa0463670 | MtrunA17_Chr3g0117121 | 66.346 | 104 | 35 | 0 | 10 | 113 | 8 | 111 | 7.60e-46 | 148 |
| Msa0463670 | MtrunA17_Chr6g0449641 | 53.191 | 141 | 56 | 3 | 9 | 149 | 6 | 136 | 8.49e-46 | 147 |
| Msa0463670 | MtrunA17_Chr4g0058651 | 66.019 | 103 | 35 | 0 | 11 | 113 | 10 | 112 | 1.02e-45 | 148 |
| Msa0463670 | MtrunA17_Chr3g0115431 | 60.550 | 109 | 43 | 0 | 4 | 112 | 1 | 109 | 2.16e-45 | 148 |
| Msa0463670 | MtrunA17_Chr3g0113891 | 63.366 | 101 | 37 | 0 | 9 | 109 | 11 | 111 | 1.54e-42 | 140 |
| Msa0463670 | MtrunA17_Chr5g0432451 | 66.038 | 106 | 36 | 0 | 8 | 113 | 39 | 144 | 1.74e-42 | 141 |
| Msa0463670 | MtrunA17_Chr3g0097221 | 59.048 | 105 | 43 | 0 | 8 | 112 | 3 | 107 | 2.61e-42 | 142 |
| Msa0463670 | MtrunA17_Chr5g0402611 | 58.333 | 108 | 45 | 0 | 5 | 112 | 1 | 108 | 7.99e-42 | 142 |
| Msa0463670 | MtrunA17_Chr5g0437401 | 62.376 | 101 | 38 | 0 | 9 | 109 | 8 | 108 | 1.87e-41 | 137 |
| Msa0463670 | MtrunA17_Chr7g0260971 | 54.955 | 111 | 49 | 1 | 3 | 112 | 5 | 115 | 1.14e-37 | 128 |
| Msa0463670 | MtrunA17_Chr8g0353981 | 59.615 | 104 | 42 | 0 | 9 | 112 | 4 | 107 | 6.64e-37 | 127 |
| Msa0463670 | MtrunA17_Chr1g0184281 | 51.695 | 118 | 56 | 1 | 12 | 128 | 15 | 132 | 1.27e-36 | 125 |
| Msa0463670 | MtrunA17_Chr5g0444351 | 42.143 | 140 | 74 | 2 | 13 | 145 | 6 | 145 | 2.19e-36 | 123 |
| Msa0463670 | MtrunA17_Chr7g0245871 | 56.863 | 102 | 43 | 1 | 12 | 112 | 27 | 128 | 7.79e-36 | 124 |
| Msa0463670 | MtrunA17_Chr7g0225111 | 52.941 | 102 | 48 | 0 | 11 | 112 | 4 | 105 | 1.23e-35 | 120 |
| Msa0463670 | MtrunA17_Chr7g0261031 | 47.183 | 142 | 66 | 4 | 4 | 142 | 1 | 136 | 2.13e-35 | 122 |
| Msa0463670 | MtrunA17_Chr8g0351721 | 56.075 | 107 | 46 | 1 | 11 | 116 | 17 | 123 | 7.52e-35 | 121 |
| Msa0463670 | MtrunA17_Chr8g0351701 | 54.369 | 103 | 46 | 1 | 11 | 112 | 22 | 124 | 3.76e-34 | 119 |
| Msa0463670 | MtrunA17_Chr6g0460951 | 43.066 | 137 | 72 | 2 | 11 | 146 | 39 | 170 | 4.74e-34 | 119 |
| Msa0463670 | MtrunA17_Chr1g0184271 | 45.517 | 145 | 69 | 6 | 12 | 151 | 12 | 151 | 1.21e-33 | 118 |
| Msa0463670 | MtrunA17_Chr5g0435641 | 54.082 | 98 | 44 | 1 | 11 | 107 | 6 | 103 | 2.04e-33 | 117 |
| Msa0463670 | MtrunA17_Chr7g0245861 | 55.208 | 96 | 40 | 2 | 6 | 98 | 6 | 101 | 4.98e-30 | 106 |
| Msa0463670 | MtrunA17_Chr8g0374591 | 42.593 | 108 | 62 | 0 | 5 | 112 | 1 | 108 | 6.06e-30 | 106 |
| Msa0463670 | MtrunA17_Chr8g0374601 | 44.954 | 109 | 60 | 0 | 4 | 112 | 18 | 126 | 1.03e-29 | 109 |
| Msa0463670 | MtrunA17_Chr8g0374581 | 44.545 | 110 | 60 | 1 | 5 | 113 | 1 | 110 | 1.02e-27 | 103 |
| Msa0463670 | MtrunA17_Chr6g0460941 | 50.000 | 88 | 43 | 1 | 12 | 98 | 7 | 94 | 8.68e-27 | 97.1 |
| Msa0463670 | MtrunA17_Chr6g0452671 | 39.423 | 104 | 63 | 0 | 2 | 105 | 1 | 104 | 1.11e-26 | 99.8 |
| Msa0463670 | MtrunA17_Chr4g0059901 | 42.742 | 124 | 64 | 2 | 5 | 121 | 3 | 126 | 2.19e-26 | 100 |
| Msa0463670 | MtrunA17_Chr6g0452691 | 37.838 | 148 | 83 | 4 | 2 | 148 | 1 | 140 | 4.00e-26 | 97.8 |
| Msa0463670 | MtrunA17_Chr2g0326051 | 61.538 | 65 | 25 | 0 | 57 | 121 | 5 | 69 | 9.84e-23 | 87.4 |
| Msa0463670 | MtrunA17_Chr2g0330201 | 38.462 | 104 | 64 | 0 | 9 | 112 | 16 | 119 | 1.53e-22 | 91.3 |
| Msa0463670 | MtrunA17_Chr4g0040831 | 42.697 | 89 | 51 | 0 | 13 | 101 | 16 | 104 | 1.73e-22 | 89.0 |
| Msa0463670 | MtrunA17_Chr8g0342351 | 37.500 | 104 | 65 | 0 | 9 | 112 | 9 | 112 | 3.54e-22 | 89.4 |
| Msa0463670 | MtrunA17_Chr6g0452661 | 38.298 | 94 | 57 | 1 | 13 | 105 | 10 | 103 | 4.71e-22 | 89.0 |
| Msa0463670 | MtrunA17_Chr4g0046201 | 38.202 | 89 | 55 | 0 | 11 | 99 | 5 | 93 | 2.42e-19 | 82.0 |
| Msa0463670 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 11 | 58 | 32 | 79 | 2.44e-19 | 77.8 |
| Msa0463670 | MtrunA17_Chr4g0055441 | 39.362 | 94 | 52 | 2 | 13 | 101 | 3 | 96 | 1.12e-18 | 77.8 |
| Msa0463670 | MtrunA17_Chr5g0439111 | 42.500 | 80 | 45 | 1 | 13 | 91 | 10 | 89 | 2.19e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463670 | AT2G30130.1 | 79.259 | 135 | 22 | 2 | 5 | 135 | 1 | 133 | 1.83e-72 | 216 |
| Msa0463670 | AT1G16530.1 | 67.544 | 114 | 36 | 1 | 7 | 119 | 9 | 122 | 3.46e-52 | 164 |
| Msa0463670 | AT1G07900.1 | 64.865 | 111 | 39 | 0 | 11 | 121 | 32 | 142 | 2.70e-50 | 160 |
| Msa0463670 | AT2G28500.1 | 65.138 | 109 | 38 | 0 | 11 | 119 | 54 | 162 | 1.03e-49 | 160 |
| Msa0463670 | AT1G31320.1 | 71.171 | 111 | 32 | 0 | 8 | 118 | 9 | 119 | 1.10e-49 | 158 |
| Msa0463670 | AT2G30340.1 | 64.151 | 106 | 38 | 0 | 8 | 113 | 48 | 153 | 3.41e-46 | 152 |
| Msa0463670 | AT2G30340.2 | 64.151 | 106 | 38 | 0 | 8 | 113 | 49 | 154 | 3.78e-46 | 152 |
| Msa0463670 | AT3G27650.1 | 62.385 | 109 | 41 | 0 | 5 | 113 | 32 | 140 | 6.17e-46 | 148 |
| Msa0463670 | AT5G63090.4 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 1.17e-45 | 148 |
| Msa0463670 | AT5G63090.3 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 1.17e-45 | 148 |
| Msa0463670 | AT5G63090.2 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 1.17e-45 | 148 |
| Msa0463670 | AT5G63090.1 | 66.990 | 103 | 34 | 0 | 10 | 112 | 9 | 111 | 1.17e-45 | 148 |
| Msa0463670 | AT3G26660.1 | 62.264 | 106 | 40 | 0 | 13 | 118 | 6 | 111 | 6.26e-45 | 144 |
| Msa0463670 | AT3G26620.1 | 62.264 | 106 | 40 | 0 | 13 | 118 | 6 | 111 | 7.29e-45 | 144 |
| Msa0463670 | AT2G40470.2 | 59.690 | 129 | 50 | 1 | 8 | 134 | 16 | 144 | 7.83e-45 | 146 |
| Msa0463670 | AT2G40470.1 | 59.690 | 129 | 50 | 1 | 8 | 134 | 41 | 169 | 1.51e-44 | 146 |
| Msa0463670 | AT3G11090.1 | 55.147 | 136 | 57 | 2 | 9 | 140 | 8 | 143 | 1.19e-43 | 142 |
| Msa0463670 | AT2G23660.2 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 3.94e-42 | 142 |
| Msa0463670 | AT2G23660.3 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 3.94e-42 | 142 |
| Msa0463670 | AT2G23660.1 | 56.731 | 104 | 45 | 0 | 10 | 113 | 3 | 106 | 3.94e-42 | 142 |
| Msa0463670 | AT5G66870.1 | 50.769 | 130 | 64 | 0 | 7 | 136 | 2 | 131 | 7.44e-42 | 142 |
| Msa0463670 | AT1G65620.1 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 8.04e-39 | 131 |
| Msa0463670 | AT1G65620.4 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 8.04e-39 | 131 |
| Msa0463670 | AT1G65620.3 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 8.04e-39 | 131 |
| Msa0463670 | AT1G65620.5 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 8.04e-39 | 131 |
| Msa0463670 | AT1G65620.2 | 61.905 | 105 | 40 | 0 | 8 | 112 | 5 | 109 | 8.04e-39 | 131 |
| Msa0463670 | AT4G00210.1 | 54.310 | 116 | 49 | 2 | 5 | 116 | 1 | 116 | 3.27e-37 | 127 |
| Msa0463670 | AT2G42430.1 | 55.856 | 111 | 48 | 1 | 3 | 112 | 6 | 116 | 1.02e-36 | 127 |
| Msa0463670 | AT3G03760.1 | 55.769 | 104 | 45 | 1 | 11 | 113 | 50 | 153 | 1.03e-36 | 127 |
| Msa0463670 | AT2G42440.1 | 46.154 | 130 | 68 | 2 | 8 | 136 | 3 | 131 | 1.58e-34 | 121 |
| Msa0463670 | AT2G45410.1 | 57.282 | 103 | 43 | 1 | 15 | 116 | 19 | 121 | 2.68e-34 | 119 |
| Msa0463670 | AT3G58190.1 | 54.639 | 97 | 43 | 1 | 12 | 107 | 11 | 107 | 5.12e-33 | 117 |
| Msa0463670 | AT2G31310.1 | 42.857 | 140 | 79 | 1 | 7 | 145 | 2 | 141 | 1.85e-32 | 114 |
| Msa0463670 | AT2G45420.1 | 51.923 | 104 | 49 | 1 | 15 | 117 | 40 | 143 | 2.72e-32 | 116 |
| Msa0463670 | AT4G00220.1 | 52.885 | 104 | 48 | 1 | 15 | 117 | 20 | 123 | 6.01e-32 | 114 |
| Msa0463670 | AT3G50510.1 | 43.902 | 123 | 67 | 1 | 10 | 130 | 10 | 132 | 3.86e-30 | 108 |
| Msa0463670 | AT3G50510.2 | 43.902 | 123 | 67 | 1 | 10 | 130 | 10 | 132 | 3.86e-30 | 108 |
| Msa0463670 | AT5G06080.1 | 51.376 | 109 | 47 | 2 | 11 | 118 | 6 | 109 | 9.02e-30 | 107 |
| Msa0463670 | AT5G35900.1 | 36.364 | 143 | 76 | 2 | 13 | 154 | 6 | 134 | 5.29e-26 | 98.6 |
| Msa0463670 | AT1G72980.1 | 37.008 | 127 | 79 | 1 | 2 | 127 | 3 | 129 | 4.29e-25 | 96.3 |
| Msa0463670 | AT3G47870.1 | 37.500 | 112 | 69 | 1 | 1 | 112 | 26 | 136 | 1.90e-24 | 97.1 |
| Msa0463670 | AT3G13850.1 | 35.537 | 121 | 74 | 1 | 13 | 129 | 37 | 157 | 2.99e-23 | 92.8 |
| Msa0463670 | AT1G06280.1 | 49.351 | 77 | 39 | 0 | 13 | 89 | 25 | 101 | 9.73e-21 | 84.7 |
| Msa0463670 | AT4G22700.1 | 37.500 | 112 | 67 | 3 | 13 | 123 | 6 | 115 | 3.57e-17 | 75.1 |
| Msa0463670 | AT2G19820.1 | 40.449 | 89 | 52 | 1 | 11 | 98 | 11 | 99 | 8.80e-17 | 72.4 |
| Msa0463670 | AT5G15060.1 | 40.000 | 80 | 44 | 2 | 7 | 83 | 12 | 90 | 5.84e-14 | 65.5 |
| Msa0463670 | AT1G36000.1 | 29.885 | 87 | 61 | 0 | 12 | 98 | 9 | 95 | 2.27e-12 | 60.8 |
| Msa0463670 | AT3G27940.3 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.62e-11 | 58.2 |
| Msa0463670 | AT3G27940.1 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.62e-11 | 58.2 |
| Msa0463670 | AT3G27940.2 | 36.364 | 66 | 42 | 0 | 11 | 76 | 4 | 69 | 4.62e-11 | 58.2 |
Find 21 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAGCACAACGGCGTCTA+AGG | 0.285930 | 3_3:-63173534 | None:intergenic |
| GCATCAGCTCTTTGTTGAAT+AGG | 0.314081 | 3_3:-63174184 | None:intergenic |
| GGATCATGTGAAGGGAAATA+AGG | 0.350330 | 3_3:-63173571 | None:intergenic |
| GTTGATCATCATGTTTCATC+TGG | 0.383715 | 3_3:-63174348 | None:intergenic |
| AGAGTGAAAGACCCTGTTTA+TGG | 0.387679 | 3_3:+63174238 | Msa0463670:CDS |
| GCTCCAACACAACCATAAAC+AGG | 0.400328 | 3_3:-63174250 | None:intergenic |
| GCATTTGAAGCTCAGAAACT+TGG | 0.418459 | 3_3:-63174291 | None:intergenic |
| TGAATTACATTGCTTGAAGA+AGG | 0.450118 | 3_3:-63174442 | None:intergenic |
| TACTGAGGAAGCTGATCATA+AGG | 0.470175 | 3_3:-63174409 | None:intergenic |
| GATCATAAGGTTTATGATCA+AGG | 0.470200 | 3_3:-63174396 | None:intergenic |
| GACCCTGTTTATGGTTGTGT+TGG | 0.486001 | 3_3:+63174247 | Msa0463670:CDS |
| CCTTAGACGCCGTTGTGCTA+AGG | 0.517412 | 3_3:+63173534 | Msa0463670:CDS |
| GAAGGAAAGTTGAAATACTG+AGG | 0.552181 | 3_3:-63174424 | None:intergenic |
| ATCATAAGGTTTATGATCAA+GGG | 0.563088 | 3_3:-63174395 | None:intergenic |
| CAACGTTAGCAAAATGCTCC+AGG | 0.569502 | 3_3:+63173633 | Msa0463670:CDS |
| AAAATTTGCAATAGTTCACA+AGG | 0.586403 | 3_3:+63173597 | Msa0463670:CDS |
| AGGAGTTTGCATGAAGCACA+AGG | 0.592427 | 3_3:-63173514 | None:intergenic |
| GAGTTTGCATGAAGCACAAG+GGG | 0.629954 | 3_3:-63173512 | None:intergenic |
| CTCCAACACAACCATAAACA+GGG | 0.645133 | 3_3:-63174249 | None:intergenic |
| GGAGTTTGCATGAAGCACAA+GGG | 0.671143 | 3_3:-63173513 | None:intergenic |
| AGATACAATCCTTAGCACAA+CGG | 0.718268 | 3_3:-63173543 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3_3:63174012-63174031 | None:intergenic | 15.0% |
| !!! | GTTAACTTTTTTTTAAAGAA+AGG | + | chr3_3:63174122-63174141 | Msa0463670:intron | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3_3:63174128-63174147 | Msa0463670:intron | 15.0% |
| !!! | TCGTTTTTAAAATAGAATAT+TGG | - | chr3_3:63174012-63174031 | None:intergenic | 15.0% |
| !!! | GTTAACTTTTTTTTAAAGAA+AGG | + | chr3_3:63174122-63174141 | Msa0463670:intron | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGAAA+TGG | + | chr3_3:63174128-63174147 | Msa0463670:intron | 15.0% |
| !!! | TGAACTATTGCAAATTTTTT+AGG | - | chr3_3:63173595-63173614 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3_3:63173684-63173703 | None:intergenic | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3_3:63173808-63173827 | None:intergenic | 20.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3_3:63173944-63173963 | None:intergenic | 20.0% |
| !! | ATGTCATATCATTTAACAAT+TGG | + | chr3_3:63173950-63173969 | Msa0463670:intron | 20.0% |
| !!! | AAAAGTGCAATTTTCTTATT+AGG | + | chr3_3:63174068-63174087 | Msa0463670:intron | 20.0% |
| !!! | TGAACTATTGCAAATTTTTT+AGG | - | chr3_3:63173595-63173614 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCTTTTTCTTTCA+AGG | - | chr3_3:63173684-63173703 | None:intergenic | 20.0% |
| !!! | AAAACTTCGATTTTAAAATG+TGG | - | chr3_3:63173808-63173827 | None:intergenic | 20.0% |
| !! | AAATGATATGACATTAAACA+TGG | - | chr3_3:63173944-63173963 | None:intergenic | 20.0% |
| !! | ATGTCATATCATTTAACAAT+TGG | + | chr3_3:63173950-63173969 | Msa0463670:intron | 20.0% |
| !!! | AAAAGTGCAATTTTCTTATT+AGG | + | chr3_3:63174068-63174087 | Msa0463670:intron | 20.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3_3:63173582-63173601 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3_3:63173583-63173602 | None:intergenic | 25.0% |
| ! | AAAATTTGCAATAGTTCACA+AGG | + | chr3_3:63173597-63173616 | Msa0463670:CDS | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3_3:63173756-63173775 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3_3:63173981-63174000 | None:intergenic | 25.0% |
| !!! | TATTAGGTTTTGAGTTTTGA+CGG | + | chr3_3:63174084-63174103 | Msa0463670:intron | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3_3:63174373-63174392 | None:intergenic | 25.0% |
| ! | ATCATAAGGTTTATGATCAA+GGG | - | chr3_3:63174398-63174417 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGGATCATGTGAA+GGG | - | chr3_3:63173582-63173601 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATCATGTGA+AGG | - | chr3_3:63173583-63173602 | None:intergenic | 25.0% |
| ! | AAAATTTGCAATAGTTCACA+AGG | + | chr3_3:63173597-63173616 | Msa0463670:CDS | 25.0% |
| !! | AGAACAAAAGTACAATTAAG+CGG | - | chr3_3:63173756-63173775 | None:intergenic | 25.0% |
| ! | CAGATATTTGTTTCAAAAAG+TGG | - | chr3_3:63173981-63174000 | None:intergenic | 25.0% |
| !!! | TATTAGGTTTTGAGTTTTGA+CGG | + | chr3_3:63174084-63174103 | Msa0463670:intron | 25.0% |
| !! | ATTTCTTGATTTTGCATTAG+AGG | - | chr3_3:63174373-63174392 | None:intergenic | 25.0% |
| ! | ATCATAAGGTTTATGATCAA+GGG | - | chr3_3:63174398-63174417 | None:intergenic | 25.0% |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3_3:63173712-63173731 | Msa0463670:intron | 30.0% |
| ATTTGTTTCAAAAAGTGGTG+TGG | - | chr3_3:63173976-63173995 | None:intergenic | 30.0% | |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3_3:63174091-63174110 | Msa0463670:intron | 30.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3_3:63174156-63174175 | Msa0463670:intron | 30.0% | |
| GATCATAAGGTTTATGATCA+AGG | - | chr3_3:63174399-63174418 | None:intergenic | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3_3:63174445-63174464 | None:intergenic | 30.0% | |
| !!! | GTATAAGAGAGCGTTATTTT+AGG | + | chr3_3:63173712-63173731 | Msa0463670:intron | 30.0% |
| ATTTGTTTCAAAAAGTGGTG+TGG | - | chr3_3:63173976-63173995 | None:intergenic | 30.0% | |
| !!! | TTTTGAGTTTTGACGGTTTT+GGG | + | chr3_3:63174091-63174110 | Msa0463670:intron | 30.0% |
| GACTTATTGTACAATGCTAT+AGG | + | chr3_3:63174156-63174175 | Msa0463670:intron | 30.0% | |
| GATCATAAGGTTTATGATCA+AGG | - | chr3_3:63174399-63174418 | None:intergenic | 30.0% | |
| TGAATTACATTGCTTGAAGA+AGG | - | chr3_3:63174445-63174464 | None:intergenic | 30.0% | |
| AGATACAATCCTTAGCACAA+CGG | - | chr3_3:63173546-63173565 | None:intergenic | 35.0% | |
| ! | GCAATAGTTCACAAGGTTTT+TGG | + | chr3_3:63173604-63173623 | Msa0463670:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3_3:63173838-63173857 | Msa0463670:intron | 35.0% |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3_3:63173865-63173884 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3_3:63173865-63173884 | Msa0463670:intron | 35.0% |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3_3:63173870-63173889 | None:intergenic | 35.0% | |
| !!! | GATGACTATTTTTGTGAACG+CGG | + | chr3_3:63174030-63174049 | Msa0463670:intron | 35.0% |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3_3:63174090-63174109 | Msa0463670:intron | 35.0% |
| !!! | TTGGTTTTGAAGGTAGGATA+TGG | - | chr3_3:63174275-63174294 | None:intergenic | 35.0% |
| !!! | AGAAACTTGGTTTTGAAGGT+AGG | - | chr3_3:63174281-63174300 | None:intergenic | 35.0% |
| GTTGATCATCATGTTTCATC+TGG | - | chr3_3:63174351-63174370 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3_3:63174427-63174446 | None:intergenic | 35.0% | |
| AGATACAATCCTTAGCACAA+CGG | - | chr3_3:63173546-63173565 | None:intergenic | 35.0% | |
| ! | GCAATAGTTCACAAGGTTTT+TGG | + | chr3_3:63173604-63173623 | Msa0463670:CDS | 35.0% |
| ! | TATCAAACTCGTTGCAGTTT+TGG | + | chr3_3:63173838-63173857 | Msa0463670:intron | 35.0% |
| TTAGAGCAAAAATCTGGGTT+AGG | - | chr3_3:63173865-63173884 | None:intergenic | 35.0% | |
| ! | AACCCAGATTTTTGCTCTAA+TGG | + | chr3_3:63173865-63173884 | Msa0463670:intron | 35.0% |
| CACCATTAGAGCAAAAATCT+GGG | - | chr3_3:63173870-63173889 | None:intergenic | 35.0% | |
| !!! | GATGACTATTTTTGTGAACG+CGG | + | chr3_3:63174030-63174049 | Msa0463670:intron | 35.0% |
| !!! | GTTTTGAGTTTTGACGGTTT+TGG | + | chr3_3:63174090-63174109 | Msa0463670:intron | 35.0% |
| !!! | TTGGTTTTGAAGGTAGGATA+TGG | - | chr3_3:63174275-63174294 | None:intergenic | 35.0% |
| !!! | AGAAACTTGGTTTTGAAGGT+AGG | - | chr3_3:63174281-63174300 | None:intergenic | 35.0% |
| GTTGATCATCATGTTTCATC+TGG | - | chr3_3:63174351-63174370 | None:intergenic | 35.0% | |
| GAAGGAAAGTTGAAATACTG+AGG | - | chr3_3:63174427-63174446 | None:intergenic | 35.0% | |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3_3:63173574-63173593 | None:intergenic | 40.0% | |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3_3:63173871-63173890 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3_3:63173868-63173887 | Msa0463670:intron | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3_3:63173873-63173892 | Msa0463670:intron | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3_3:63174100-63174119 | Msa0463670:intron | 40.0% |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3_3:63174187-63174206 | None:intergenic | 40.0% | |
| AGAGTGAAAGACCCTGTTTA+TGG | + | chr3_3:63174238-63174257 | Msa0463670:CDS | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3_3:63174252-63174271 | None:intergenic | 40.0% | |
| !!! | GCTCAGAAACTTGGTTTTGA+AGG | - | chr3_3:63174285-63174304 | None:intergenic | 40.0% |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3_3:63174294-63174313 | None:intergenic | 40.0% |
| TACTGAGGAAGCTGATCATA+AGG | - | chr3_3:63174412-63174431 | None:intergenic | 40.0% | |
| GGATCATGTGAAGGGAAATA+AGG | - | chr3_3:63173574-63173593 | None:intergenic | 40.0% | |
| CCACCATTAGAGCAAAAATC+TGG | - | chr3_3:63173871-63173890 | None:intergenic | 40.0% | |
| ! | CCAGATTTTTGCTCTAATGG+TGG | + | chr3_3:63173868-63173887 | Msa0463670:intron | 40.0% |
| !! | TTTTTGCTCTAATGGTGGTG+TGG | + | chr3_3:63173873-63173892 | Msa0463670:intron | 40.0% |
| !!! | TTGACGGTTTTGGGTGAAAA+TGG | + | chr3_3:63174100-63174119 | Msa0463670:intron | 40.0% |
| GCATCAGCTCTTTGTTGAAT+AGG | - | chr3_3:63174187-63174206 | None:intergenic | 40.0% | |
| AGAGTGAAAGACCCTGTTTA+TGG | + | chr3_3:63174238-63174257 | Msa0463670:CDS | 40.0% | |
| CTCCAACACAACCATAAACA+GGG | - | chr3_3:63174252-63174271 | None:intergenic | 40.0% | |
| !!! | GCTCAGAAACTTGGTTTTGA+AGG | - | chr3_3:63174285-63174304 | None:intergenic | 40.0% |
| ! | GCATTTGAAGCTCAGAAACT+TGG | - | chr3_3:63174294-63174313 | None:intergenic | 40.0% |
| TACTGAGGAAGCTGATCATA+AGG | - | chr3_3:63174412-63174431 | None:intergenic | 40.0% | |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3_3:63173515-63173534 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3_3:63173516-63173535 | None:intergenic | 45.0% | |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3_3:63173517-63173536 | None:intergenic | 45.0% | |
| ! | GAGCATTTTGCTAACGTTGC+TGG | - | chr3_3:63173632-63173651 | None:intergenic | 45.0% |
| CAACGTTAGCAAAATGCTCC+AGG | + | chr3_3:63173633-63173652 | Msa0463670:CDS | 45.0% | |
| ! | TCAAGGAAGCATAGAAAGCG+TGG | - | chr3_3:63173667-63173686 | None:intergenic | 45.0% |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3_3:63174247-63174266 | Msa0463670:CDS | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3_3:63174253-63174272 | None:intergenic | 45.0% | |
| GAGTTTGCATGAAGCACAAG+GGG | - | chr3_3:63173515-63173534 | None:intergenic | 45.0% | |
| GGAGTTTGCATGAAGCACAA+GGG | - | chr3_3:63173516-63173535 | None:intergenic | 45.0% | |
| AGGAGTTTGCATGAAGCACA+AGG | - | chr3_3:63173517-63173536 | None:intergenic | 45.0% | |
| ! | GAGCATTTTGCTAACGTTGC+TGG | - | chr3_3:63173632-63173651 | None:intergenic | 45.0% |
| CAACGTTAGCAAAATGCTCC+AGG | + | chr3_3:63173633-63173652 | Msa0463670:CDS | 45.0% | |
| ! | TCAAGGAAGCATAGAAAGCG+TGG | - | chr3_3:63173667-63173686 | None:intergenic | 45.0% |
| GACCCTGTTTATGGTTGTGT+TGG | + | chr3_3:63174247-63174266 | Msa0463670:CDS | 45.0% | |
| GCTCCAACACAACCATAAAC+AGG | - | chr3_3:63174253-63174272 | None:intergenic | 45.0% | |
| ! | GAAAGCGTGGATGAAGTACC+TGG | - | chr3_3:63173654-63173673 | None:intergenic | 50.0% |
| ! | GAAAGCGTGGATGAAGTACC+TGG | - | chr3_3:63173654-63173673 | None:intergenic | 50.0% |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3_3:63173537-63173556 | None:intergenic | 55.0% | |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3_3:63173534-63173553 | Msa0463670:CDS | 55.0% | |
| CCTTAGCACAACGGCGTCTA+AGG | - | chr3_3:63173537-63173556 | None:intergenic | 55.0% | |
| CCTTAGACGCCGTTGTGCTA+AGG | + | chr3_3:63173534-63173553 | Msa0463670:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 63173481 | 63174498 | 63173481 | ID=Msa0463670;Name=Msa0463670 |
| chr3_3 | mRNA | 63173481 | 63174498 | 63173481 | ID=Msa0463670-mRNA-1;Parent=Msa0463670;Name=Msa0463670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|164 |
| chr3_3 | exon | 63173481 | 63173654 | 63173481 | ID=Msa0463670-mRNA-1:exon:13644;Parent=Msa0463670-mRNA-1 |
| chr3_3 | exon | 63174178 | 63174498 | 63174178 | ID=Msa0463670-mRNA-1:exon:13645;Parent=Msa0463670-mRNA-1 |
| chr3_3 | CDS | 63173481 | 63173654 | 63173481 | ID=Msa0463670-mRNA-1:cds;Parent=Msa0463670-mRNA-1 |
| chr3_3 | CDS | 63174178 | 63174498 | 63174178 | ID=Msa0463670-mRNA-1:cds;Parent=Msa0463670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
