Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549870 | XP_013456377.1 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 2.02e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549870 | sp|Q8W453|DIRL1_ARATH | 41.558 | 77 | 42 | 1 | 28 | 104 | 29 | 102 | 5.92e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549870 | I3SWL0 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 9.66e-65 | 200 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0549870 | 0.839822 | 1.259332e-57 | -8.615850e-47 |
| Msa0006840 | Msa0549870 | 0.816084 | 6.636994e-52 | -8.615850e-47 |
| Msa0013270 | Msa0549870 | 0.803527 | 3.340849e-49 | -8.615850e-47 |
| Msa0043840 | Msa0549870 | 0.819696 | 1.014160e-52 | -8.615850e-47 |
| Msa0045620 | Msa0549870 | 0.823335 | 1.463645e-53 | -8.615850e-47 |
| Msa0050530 | Msa0549870 | 0.834750 | 2.502179e-56 | -8.615850e-47 |
| Msa0057860 | Msa0549870 | 0.839461 | 1.562729e-57 | -8.615850e-47 |
| Msa0073270 | Msa0549870 | 0.839811 | 1.267242e-57 | -8.615850e-47 |
| Msa0075840 | Msa0549870 | 0.802826 | 4.664932e-49 | -8.615850e-47 |
| Msa0089470 | Msa0549870 | -0.804879 | 1.747675e-49 | -8.615850e-47 |
| Msa0089540 | Msa0549870 | 0.802149 | 6.433569e-49 | -8.615850e-47 |
| Msa0090500 | Msa0549870 | 0.821402 | 4.114793e-53 | -8.615850e-47 |
| Msa0092350 | Msa0549870 | 0.807930 | 3.973750e-50 | -8.615850e-47 |
| Msa0100600 | Msa0549870 | 0.837358 | 5.449883e-57 | -8.615850e-47 |
| Msa0100890 | Msa0549870 | 0.830552 | 2.754494e-55 | -8.615850e-47 |
| Msa0101530 | Msa0549870 | 0.801616 | 8.279990e-49 | -8.615850e-47 |
| Msa0102920 | Msa0549870 | 0.842346 | 2.735418e-58 | -8.615850e-47 |
| Msa0121470 | Msa0549870 | 0.816017 | 6.867082e-52 | -8.615850e-47 |
| Msa0121490 | Msa0549870 | 0.817643 | 2.965373e-52 | -8.615850e-47 |
| Msa0128340 | Msa0549870 | 0.803720 | 3.046053e-49 | -8.615850e-47 |
| Msa0128740 | Msa0549870 | 0.803007 | 4.280676e-49 | -8.615850e-47 |
| Msa0137970 | Msa0549870 | 0.809322 | 2.004125e-50 | -8.615850e-47 |
| Msa0147680 | Msa0549870 | 0.854257 | 1.388012e-61 | -8.615850e-47 |
| Msa0164170 | Msa0549870 | 0.806325 | 8.689521e-50 | -8.615850e-47 |
| Msa0168380 | Msa0549870 | 0.832486 | 9.198574e-56 | -8.615850e-47 |
| Msa0178440 | Msa0549870 | -0.808200 | 3.481663e-50 | -8.615850e-47 |
| Msa0183920 | Msa0549870 | 0.816299 | 5.941151e-52 | -8.615850e-47 |
| Msa0185180 | Msa0549870 | -0.810847 | 9.404947e-51 | -8.615850e-47 |
| Msa0185690 | Msa0549870 | 0.812576 | 3.955333e-51 | -8.615850e-47 |
| Msa0193270 | Msa0549870 | -0.814551 | 1.454299e-51 | -8.615850e-47 |
| Msa0206370 | Msa0549870 | 0.827851 | 1.244845e-54 | -8.615850e-47 |
| Msa0219840 | Msa0549870 | 0.824661 | 7.153136e-54 | -8.615850e-47 |
| Msa0221460 | Msa0549870 | -0.828365 | 9.360590e-55 | -8.615850e-47 |
| Msa0234660 | Msa0549870 | -0.804726 | 1.880965e-49 | -8.615850e-47 |
| Msa0235080 | Msa0549870 | 0.808616 | 2.837971e-50 | -8.615850e-47 |
| Msa0368630 | Msa0549870 | 0.805177 | 1.514069e-49 | -8.615850e-47 |
| Msa0372100 | Msa0549870 | 0.825513 | 4.499069e-54 | -8.615850e-47 |
| Msa0395300 | Msa0549870 | -0.813701 | 2.240003e-51 | -8.615850e-47 |
| Msa0416210 | Msa0549870 | 0.828410 | 9.132350e-55 | -8.615850e-47 |
| Msa0433630 | Msa0549870 | 0.823915 | 1.070849e-53 | -8.615850e-47 |
| Msa0463670 | Msa0549870 | 0.802750 | 4.837218e-49 | -8.615850e-47 |
| Msa0480270 | Msa0549870 | 0.804311 | 2.295804e-49 | -8.615850e-47 |
| Msa0240590 | Msa0549870 | -0.812027 | 5.213228e-51 | -8.615850e-47 |
| Msa0244820 | Msa0549870 | -0.832570 | 8.767630e-56 | -8.615850e-47 |
| Msa0260980 | Msa0549870 | 0.845686 | 3.478175e-59 | -8.615850e-47 |
| Msa0272990 | Msa0549870 | -0.819021 | 1.445470e-52 | -8.615850e-47 |
| Msa0273360 | Msa0549870 | 0.801213 | 1.001153e-48 | -8.615850e-47 |
| Msa0279090 | Msa0549870 | -0.808491 | 3.016975e-50 | -8.615850e-47 |
| Msa0288400 | Msa0549870 | 0.803700 | 3.076020e-49 | -8.615850e-47 |
| Msa0300670 | Msa0549870 | -0.831068 | 2.057698e-55 | -8.615850e-47 |
| Msa0316000 | Msa0549870 | 0.816120 | 6.514632e-52 | -8.615850e-47 |
| Msa0336430 | Msa0549870 | 0.854633 | 1.080601e-61 | -8.615850e-47 |
| Msa0336460 | Msa0549870 | 0.822410 | 2.404676e-53 | -8.615850e-47 |
| Msa0336520 | Msa0549870 | 0.850575 | 1.553972e-60 | -8.615850e-47 |
| Msa0337760 | Msa0549870 | -0.827724 | 1.335995e-54 | -8.615850e-47 |
| Msa0342220 | Msa0549870 | 0.805105 | 1.567471e-49 | -8.615850e-47 |
| Msa0515760 | Msa0549870 | 0.804827 | 1.792200e-49 | -8.615850e-47 |
| Msa0521510 | Msa0549870 | 0.822173 | 2.729926e-53 | -8.615850e-47 |
| Msa0521530 | Msa0549870 | 0.803549 | 3.306257e-49 | -8.615850e-47 |
| Msa0526150 | Msa0549870 | 0.801928 | 7.142104e-49 | -8.615850e-47 |
| Msa0528310 | Msa0549870 | 0.817488 | 3.213147e-52 | -8.615850e-47 |
| Msa0530660 | Msa0549870 | 0.823561 | 1.296617e-53 | -8.615850e-47 |
| Msa0541880 | Msa0549870 | 0.850302 | 1.853521e-60 | -8.615850e-47 |
| Msa0541940 | Msa0549870 | 0.841200 | 5.488964e-58 | -8.615850e-47 |
| Msa0549870 | Msa0566460 | 0.826190 | 3.107032e-54 | -8.615850e-47 |
| Msa0549870 | Msa0568460 | -0.808375 | 3.193967e-50 | -8.615850e-47 |
| Msa0549870 | Msa0571350 | 0.801649 | 8.151546e-49 | -8.615850e-47 |
| Msa0549870 | Msa0572360 | 0.813961 | 1.963918e-51 | -8.615850e-47 |
| Msa0549870 | Msa0574660 | 0.809835 | 1.554841e-50 | -8.615850e-47 |
| Msa0549870 | Msa0575950 | 0.822009 | 2.978812e-53 | -8.615850e-47 |
| Msa0549870 | Msa0576330 | 0.851258 | 9.978139e-61 | -8.615850e-47 |
| Msa0549870 | Msa0584970 | 0.836150 | 1.107710e-56 | -8.615850e-47 |
| Msa0549870 | Msa0587180 | 0.847732 | 9.597277e-60 | -8.615850e-47 |
| Msa0549870 | Msa0591890 | 0.807038 | 6.142635e-50 | -8.615850e-47 |
| Msa0549870 | Msa0605350 | 0.965482 | 1.158782e-124 | -8.615850e-47 |
| Msa0549870 | Msa0605520 | 0.832955 | 7.033270e-56 | -8.615850e-47 |
| Msa0549870 | Msa0610190 | 0.802891 | 4.523033e-49 | -8.615850e-47 |
| Msa0549870 | Msa0612880 | -0.807553 | 4.778177e-50 | -8.615850e-47 |
| Msa0549870 | Msa0623310 | 0.829638 | 4.602164e-55 | -8.615850e-47 |
| Msa0549870 | Msa0624050 | 0.807283 | 5.451248e-50 | -8.615850e-47 |
| Msa0549870 | Msa0626980 | 0.820001 | 8.639706e-53 | -8.615850e-47 |
| Msa0549870 | Msa0627360 | 0.825474 | 4.596506e-54 | -8.615850e-47 |
| Msa0549870 | Msa0630440 | 0.803348 | 3.638067e-49 | -8.615850e-47 |
| Msa0549870 | Msa0646260 | 0.963332 | 5.893324e-122 | -8.615850e-47 |
| Msa0549870 | Msa0663290 | 0.805657 | 1.200666e-49 | -8.615850e-47 |
| Msa0549870 | Msa0664070 | 0.800439 | 1.440844e-48 | -8.615850e-47 |
| Msa0549870 | Msa0673940 | 0.854581 | 1.118773e-61 | -8.615850e-47 |
| Msa0549870 | Msa0676200 | 0.834610 | 2.713183e-56 | -8.615850e-47 |
| Msa0549870 | Msa0685390 | -0.803710 | 3.061207e-49 | -8.615850e-47 |
| Msa0549870 | Msa0685610 | 0.846765 | 1.768231e-59 | -8.615850e-47 |
| Msa0549870 | Msa0689830 | 0.823857 | 1.105157e-53 | -8.615850e-47 |
| Msa0549870 | Msa0702970 | 0.801101 | 1.055571e-48 | -8.615850e-47 |
| Msa0549870 | Msa0708020 | 0.811723 | 6.070621e-51 | -8.615850e-47 |
| Msa0549870 | Msa0715350 | 0.806726 | 7.150389e-50 | -8.615850e-47 |
| Msa0549870 | Msa0751720 | 0.839359 | 1.661395e-57 | -8.615850e-47 |
| Msa0549870 | Msa0756670 | -0.806350 | 8.586757e-50 | -8.615850e-47 |
| Msa0549870 | Msa0761830 | 0.840837 | 6.835642e-58 | -8.615850e-47 |
| Msa0549870 | Msa0771910 | 0.803741 | 3.015946e-49 | -8.615850e-47 |
| Msa0549870 | Msa0774060 | 0.810835 | 9.459856e-51 | -8.615850e-47 |
| Msa0549870 | Msa0804170 | 0.816678 | 4.887283e-52 | -8.615850e-47 |
| Msa0549870 | Msa0810080 | 0.800631 | 1.316260e-48 | -8.615850e-47 |
| Msa0549870 | Msa0831820 | 0.840083 | 1.076160e-57 | -8.615850e-47 |
| Msa0549870 | Msa0836060 | -0.802145 | 6.445220e-49 | -8.615850e-47 |
| Msa0549870 | Msa0842180 | 0.819490 | 1.130272e-52 | -8.615850e-47 |
| Msa0549870 | Msa0846900 | 0.800420 | 1.453418e-48 | -8.615850e-47 |
| Msa0549870 | Msa0850600 | 0.806032 | 1.001509e-49 | -8.615850e-47 |
| Msa0549870 | Msa0870020 | 0.814348 | 1.613207e-51 | -8.615850e-47 |
| Msa0549870 | Msa0871420 | 0.828778 | 7.439808e-55 | -8.615850e-47 |
| Msa0549870 | Msa0876630 | 0.810986 | 8.771721e-51 | -8.615850e-47 |
| Msa0549870 | Msa0900830 | 0.836366 | 9.759634e-57 | -8.615850e-47 |
| Msa0549870 | Msa0903340 | 0.803837 | 2.881518e-49 | -8.615850e-47 |
| Msa0549870 | Msa0929900 | 0.817895 | 2.600435e-52 | -8.615850e-47 |
| Msa0549870 | Msa0931370 | 0.827736 | 1.326904e-54 | -8.615850e-47 |
| Msa0549870 | Msa0936630 | 0.821652 | 3.603874e-53 | -8.615850e-47 |
| Msa0549870 | Msa0965800 | 0.814874 | 1.233566e-51 | -8.615850e-47 |
| Msa0549870 | Msa0970040 | 0.832444 | 9.423096e-56 | -8.615850e-47 |
| Msa0549870 | Msa0970100 | 0.825718 | 4.022829e-54 | -8.615850e-47 |
| Msa0549870 | Msa0973770 | 0.802938 | 4.422867e-49 | -8.615850e-47 |
| Msa0549870 | Msa0987670 | 0.806256 | 8.987318e-50 | -8.615850e-47 |
| Msa0549870 | Msa1011360 | 0.803219 | 3.870208e-49 | -8.615850e-47 |
| Msa0549870 | Msa1021560 | 0.824831 | 6.523539e-54 | -8.615850e-47 |
| Msa0549870 | Msa1026710 | 0.830288 | 3.195537e-55 | -8.615850e-47 |
| Msa0549870 | Msa1038860 | 0.836597 | 8.524788e-57 | -8.615850e-47 |
| Msa0549870 | Msa1057620 | -0.817690 | 2.892755e-52 | -8.615850e-47 |
| Msa0549870 | Msa1060300 | 0.812614 | 3.879586e-51 | -8.615850e-47 |
| Msa0549870 | Msa1085560 | 0.824060 | 9.905296e-54 | -8.615850e-47 |
| Msa0549870 | Msa1085680 | 0.854786 | 9.758437e-62 | -8.615850e-47 |
| Msa0549870 | Msa1105540 | 0.803889 | 2.810679e-49 | -8.615850e-47 |
| Msa0549870 | Msa1105580 | 0.804687 | 1.916585e-49 | -8.615850e-47 |
| Msa0549870 | Msa1124210 | 0.805816 | 1.112245e-49 | -8.615850e-47 |
| Msa0549870 | Msa1130770 | 0.821991 | 3.006947e-53 | -8.615850e-47 |
| Msa0549870 | Msa1144990 | 0.826167 | 3.147312e-54 | -8.615850e-47 |
| Msa0549870 | Msa1148930 | 0.817850 | 2.662043e-52 | -8.615850e-47 |
| Msa0549870 | Msa1154630 | 0.827131 | 1.853206e-54 | -8.615850e-47 |
| Msa0549870 | Msa1162360 | 0.826517 | 2.598365e-54 | -8.615850e-47 |
| Msa0549870 | Msa1165880 | 0.800302 | 1.536392e-48 | -8.615850e-47 |
| Msa0549870 | Msa1186670 | 0.807735 | 4.371894e-50 | -8.615850e-47 |
| Msa0549870 | Msa1192360 | 0.814125 | 1.806277e-51 | -8.615850e-47 |
| Msa0549870 | Msa1197720 | 0.823396 | 1.416708e-53 | -8.615850e-47 |
| Msa0549870 | Msa1200360 | 0.807358 | 5.256078e-50 | -8.615850e-47 |
| Msa0549870 | Msa1206040 | 0.803338 | 3.655734e-49 | -8.615850e-47 |
| Msa0549870 | Msa1217890 | 0.843729 | 1.171282e-58 | -8.615850e-47 |
| Msa0549870 | Msa1220580 | 0.809930 | 1.483295e-50 | -8.615850e-47 |
| Msa0549870 | Msa1220720 | 0.836001 | 1.208152e-56 | -8.615850e-47 |
| Msa0549870 | Msa1231440 | 0.816810 | 4.563892e-52 | -8.615850e-47 |
| Msa0549870 | Msa1246830 | 0.800654 | 1.302082e-48 | -8.615850e-47 |
| Msa0549870 | Msa1251410 | 0.800004 | 1.766435e-48 | -8.615850e-47 |
| Msa0549870 | Msa1253270 | 0.801114 | 1.048975e-48 | -8.615850e-47 |
| Msa0549870 | Msa1255710 | 0.827937 | 1.187074e-54 | -8.615850e-47 |
| Msa0549870 | Msa1265570 | 0.839326 | 1.694336e-57 | -8.615850e-47 |
| Msa0549870 | Msa1278000 | 0.810066 | 1.386313e-50 | -8.615850e-47 |
| Msa0549870 | Msa1288070 | 0.802032 | 6.800498e-49 | -8.615850e-47 |
| Msa0549870 | Msa1288970 | -0.825428 | 4.713300e-54 | -8.615850e-47 |
| Msa0549870 | Msa1315500 | 0.809246 | 2.080183e-50 | -8.615850e-47 |
| Msa0549870 | Msa1328280 | 0.809864 | 1.532339e-50 | -8.615850e-47 |
| Msa0549870 | Msa1328870 | 0.803336 | 3.660637e-49 | -8.615850e-47 |
| Msa0549870 | Msa1334560 | 0.804268 | 2.343962e-49 | -8.615850e-47 |
| Msa0549870 | Msa1334670 | 0.840524 | 8.258473e-58 | -8.615850e-47 |
| Msa0549870 | Msa1352580 | 0.842855 | 2.004147e-58 | -8.615850e-47 |
| Msa0549870 | Msa1356450 | 0.805884 | 1.076255e-49 | -8.615850e-47 |
| Msa0549870 | Msa1362590 | 0.820015 | 8.573532e-53 | -8.615850e-47 |
| Msa0549870 | Msa1365230 | 0.839242 | 1.781163e-57 | -8.615850e-47 |
| Msa0549870 | Msa1370270 | -0.824377 | 8.340439e-54 | -8.615850e-47 |
| Msa0549870 | Msa1371800 | 0.829286 | 5.605670e-55 | -8.615850e-47 |
| Msa0549870 | Msa1372030 | 0.843444 | 1.396451e-58 | -8.615850e-47 |
| Msa0549870 | Msa1376310 | 0.826685 | 2.368308e-54 | -8.615850e-47 |
| Msa0549870 | Msa1379940 | 0.831328 | 1.776646e-55 | -8.615850e-47 |
| Msa0549870 | Msa1389820 | 0.819803 | 9.587995e-53 | -8.615850e-47 |
| Msa0549870 | Msa1398490 | 0.802285 | 6.033675e-49 | -8.615850e-47 |
| Msa0549870 | Msa1413020 | 0.823408 | 1.407493e-53 | -8.615850e-47 |
| Msa0549870 | Msa1420830 | 0.837563 | 4.827405e-57 | -8.615850e-47 |
| Msa0549870 | Msa1427600 | -0.810693 | 1.015522e-50 | -8.615850e-47 |
| Msa0549870 | Msa1429810 | 0.810058 | 1.391757e-50 | -8.615850e-47 |
| Msa0549870 | Msa1434700 | 0.828794 | 7.374420e-55 | -8.615850e-47 |
| Msa0549870 | Msa1438510 | 0.851426 | 8.943262e-61 | -8.615850e-47 |
| Msa0549870 | Msa1447900 | 0.825234 | 5.238040e-54 | -8.615850e-47 |
| Msa0549870 | Msa1462780 | 0.856644 | 2.798247e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549870 | MtrunA17_Chr4g0034581 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.86e-68 | 200 |
| Msa0549870 | MtrunA17_Chr4g0034531 | 73.077 | 104 | 28 | 0 | 1 | 104 | 1 | 104 | 1.13e-52 | 160 |
| Msa0549870 | MtrunA17_Chr4g0034561 | 55.238 | 105 | 45 | 2 | 1 | 104 | 1 | 104 | 2.01e-37 | 122 |
| Msa0549870 | MtrunA17_Chr4g0034571 | 42.857 | 105 | 52 | 2 | 1 | 105 | 1 | 97 | 2.66e-21 | 84.0 |
| Msa0549870 | MtrunA17_Chr7g0234401 | 41.748 | 103 | 57 | 1 | 2 | 104 | 5 | 104 | 8.68e-21 | 79.7 |
| Msa0549870 | MtrunA17_Chr5g0445131 | 33.654 | 104 | 60 | 4 | 2 | 104 | 7 | 102 | 1.83e-11 | 55.8 |
| Msa0549870 | MtrunA17_Chr3g0100281 | 36.667 | 90 | 49 | 3 | 7 | 96 | 14 | 95 | 4.49e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549870 | AT5G48490.1 | 36.634 | 101 | 60 | 2 | 5 | 104 | 4 | 101 | 4.02e-14 | 63.2 |
| Msa0549870 | AT5G48485.1 | 41.558 | 77 | 42 | 1 | 28 | 104 | 29 | 102 | 6.02e-14 | 62.8 |
Find 33 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGGTTGCTTTCTTTCTA+TGG | 0.215569 | 4_1:+45136913 | Msa0549870:CDS |
| CTATGTCGTTATAAGGATTC+AGG | 0.249484 | 4_1:+45136895 | Msa0549870:CDS |
| TCCTGTTAACTGTAAGCTTA+TGG | 0.254280 | 4_1:+45136963 | Msa0549870:CDS |
| TCAATGCCTATGTCGTTATA+AGG | 0.293667 | 4_1:+45136888 | Msa0549870:CDS |
| AATACCATGATGTTGGTTAA+TGG | 0.374528 | 4_1:+45136739 | Msa0549870:CDS |
| AGTGGTGACAATTCTGTTAA+TGG | 0.378651 | 4_1:+45136817 | Msa0549870:CDS |
| TCCATAAGCTTACAGTTAAC+AGG | 0.382556 | 4_1:-45136964 | None:intergenic |
| GGAAGTTCCATGGCTTGGTT+AGG | 0.427875 | 4_1:-45136943 | None:intergenic |
| TAGGCATTGAAGATCGGCTT+TGG | 0.464541 | 4_1:-45136875 | None:intergenic |
| ATTAACCAACATCATGGTAT+TGG | 0.470830 | 4_1:-45136737 | None:intergenic |
| TAACAGGAAGTTCCATGGCT+TGG | 0.486774 | 4_1:-45136948 | None:intergenic |
| TATGATTGTGGCGATGTTGT+TGG | 0.507427 | 4_1:+45136708 | Msa0549870:CDS |
| TATGTCGTTATAAGGATTCA+GGG | 0.530226 | 4_1:+45136896 | Msa0549870:CDS |
| CTGAATCCTTATAACGACAT+AGG | 0.550946 | 4_1:-45136894 | None:intergenic |
| AGAGATGGAGGCATACAAGC+AGG | 0.551353 | 4_1:+45136684 | None:intergenic |
| AACAAGGACTGAAGGCATGC+GGG | 0.556452 | 4_1:+45136785 | Msa0549870:CDS |
| GCCATCCGATGCTTGCTGCT+CGG | 0.562907 | 4_1:+45136846 | Msa0549870:CDS |
| ACAGTTAACAGGAAGTTCCA+TGG | 0.568806 | 4_1:-45136953 | None:intergenic |
| CTGACCATTAACCAACATCA+TGG | 0.570185 | 4_1:-45136743 | None:intergenic |
| GCCGAGCAGCAAGCATCGGA+TGG | 0.578399 | 4_1:-45136847 | None:intergenic |
| ACGACATAGGCATTGAAGAT+CGG | 0.583458 | 4_1:-45136881 | None:intergenic |
| GAATTGTCACCACTCACATA+CGG | 0.587779 | 4_1:-45136808 | None:intergenic |
| CATGACAAAACAAGGACTGA+AGG | 0.588836 | 4_1:+45136777 | Msa0549870:CDS |
| AATAGCCGAGCAGCAAGCAT+CGG | 0.592693 | 4_1:-45136851 | None:intergenic |
| ATACAAGCAGGTTATGATTG+TGG | 0.602790 | 4_1:+45136696 | Msa0549870:CDS |
| CAACATCATGGTATTGGCAA+TGG | 0.605291 | 4_1:-45136731 | None:intergenic |
| CATTGCCAATACCATGATGT+TGG | 0.609484 | 4_1:+45136732 | Msa0549870:CDS |
| TTATGTCACATGACAAAACA+AGG | 0.627195 | 4_1:+45136769 | Msa0549870:CDS |
| AAACAAGGACTGAAGGCATG+CGG | 0.631589 | 4_1:+45136784 | Msa0549870:CDS |
| TATTGATCCTAACCAAGCCA+TGG | 0.632800 | 4_1:+45136936 | Msa0549870:CDS |
| AACCACATGACTAGTAGCAG+TGG | 0.639755 | 4_1:-45136993 | None:intergenic |
| GCATGCGGGCCGTATGTGAG+TGG | 0.668512 | 4_1:+45136799 | Msa0549870:CDS |
| ACATGACTAGTAGCAGTGGA+AGG | 0.673463 | 4_1:-45136989 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATTAACCAACATCATGGTAT+TGG | - | chr4_1:45136740-45136759 | None:intergenic | 30.0% | |
| ! | AATACCATGATGTTGGTTAA+TGG | + | chr4_1:45136739-45136758 | Msa0549870:CDS | 30.0% |
| TTATGTCACATGACAAAACA+AGG | + | chr4_1:45136769-45136788 | Msa0549870:CDS | 30.0% | |
| TATGTCGTTATAAGGATTCA+GGG | + | chr4_1:45136896-45136915 | Msa0549870:CDS | 30.0% | |
| ATACAAGCAGGTTATGATTG+TGG | + | chr4_1:45136696-45136715 | Msa0549870:CDS | 35.0% | |
| AGTGGTGACAATTCTGTTAA+TGG | + | chr4_1:45136817-45136836 | Msa0549870:CDS | 35.0% | |
| TCAATGCCTATGTCGTTATA+AGG | + | chr4_1:45136888-45136907 | Msa0549870:CDS | 35.0% | |
| CTGAATCCTTATAACGACAT+AGG | - | chr4_1:45136897-45136916 | None:intergenic | 35.0% | |
| CTATGTCGTTATAAGGATTC+AGG | + | chr4_1:45136895-45136914 | Msa0549870:CDS | 35.0% | |
| TCCTGTTAACTGTAAGCTTA+TGG | + | chr4_1:45136963-45136982 | Msa0549870:CDS | 35.0% | |
| TCCATAAGCTTACAGTTAAC+AGG | - | chr4_1:45136967-45136986 | None:intergenic | 35.0% | |
| TATGATTGTGGCGATGTTGT+TGG | + | chr4_1:45136708-45136727 | Msa0549870:CDS | 40.0% | |
| !! | CAACATCATGGTATTGGCAA+TGG | - | chr4_1:45136734-45136753 | None:intergenic | 40.0% |
| CATTGCCAATACCATGATGT+TGG | + | chr4_1:45136732-45136751 | Msa0549870:CDS | 40.0% | |
| CTGACCATTAACCAACATCA+TGG | - | chr4_1:45136746-45136765 | None:intergenic | 40.0% | |
| CATGACAAAACAAGGACTGA+AGG | + | chr4_1:45136777-45136796 | Msa0549870:CDS | 40.0% | |
| GAATTGTCACCACTCACATA+CGG | - | chr4_1:45136811-45136830 | None:intergenic | 40.0% | |
| !! | ACGACATAGGCATTGAAGAT+CGG | - | chr4_1:45136884-45136903 | None:intergenic | 40.0% |
| ! | TCAGGGTTGCTTTCTTTCTA+TGG | + | chr4_1:45136913-45136932 | Msa0549870:CDS | 40.0% |
| TATTGATCCTAACCAAGCCA+TGG | + | chr4_1:45136936-45136955 | Msa0549870:CDS | 40.0% | |
| ACAGTTAACAGGAAGTTCCA+TGG | - | chr4_1:45136956-45136975 | None:intergenic | 40.0% | |
| ! | AAACAAGGACTGAAGGCATG+CGG | + | chr4_1:45136784-45136803 | Msa0549870:CDS | 45.0% |
| !! | TAGGCATTGAAGATCGGCTT+TGG | - | chr4_1:45136878-45136897 | None:intergenic | 45.0% |
| TAACAGGAAGTTCCATGGCT+TGG | - | chr4_1:45136951-45136970 | None:intergenic | 45.0% | |
| ! | AACAAGGACTGAAGGCATGC+GGG | + | chr4_1:45136785-45136804 | Msa0549870:CDS | 50.0% |
| AATAGCCGAGCAGCAAGCAT+CGG | - | chr4_1:45136854-45136873 | None:intergenic | 50.0% | |
| !! | GGAAGTTCCATGGCTTGGTT+AGG | - | chr4_1:45136946-45136965 | None:intergenic | 50.0% |
| ! | GCCATCCGATGCTTGCTGCT+CGG | + | chr4_1:45136846-45136865 | Msa0549870:CDS | 60.0% |
| GCATGCGGGCCGTATGTGAG+TGG | + | chr4_1:45136799-45136818 | Msa0549870:CDS | 65.0% | |
| !! | GCCGAGCAGCAAGCATCGGA+TGG | - | chr4_1:45136850-45136869 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 45136688 | 45137005 | 45136688 | ID=Msa0549870;Name=Msa0549870 |
| chr4_1 | mRNA | 45136688 | 45137005 | 45136688 | ID=Msa0549870-mRNA-1;Parent=Msa0549870;Name=Msa0549870-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|105 |
| chr4_1 | exon | 45136688 | 45137005 | 45136688 | ID=Msa0549870-mRNA-1:exon:11831;Parent=Msa0549870-mRNA-1 |
| chr4_1 | CDS | 45136688 | 45137005 | 45136688 | ID=Msa0549870-mRNA-1:cds;Parent=Msa0549870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
