Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467440 | XP_024635093.2 | 97.115 | 416 | 1 | 1 | 1 | 405 | 1 | 416 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467440 | sp|Q9SL02|RAD50_ARATH | 74.038 | 416 | 97 | 1 | 1 | 405 | 1 | 416 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467440 | A0A396IUE8 | 97.115 | 416 | 1 | 1 | 1 | 405 | 1 | 416 | 0.0 | 827 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0397150 | Msa0467440 | 0.824890 | 6.317907e-54 | -8.615850e-47 |
| Msa0421450 | Msa0467440 | 0.848653 | 5.343504e-60 | -8.615850e-47 |
| Msa0467440 | Msa1155900 | 0.805347 | 1.394928e-49 | -8.615850e-47 |
| Msa0467440 | Msa1186520 | 0.844662 | 6.579413e-59 | -8.615850e-47 |
| Msa0467440 | Msa1234710 | 0.828245 | 1.000958e-54 | -8.615850e-47 |
| Msa0467440 | Msa1267040 | 0.819173 | 1.334548e-52 | -8.615850e-47 |
| Msa0467440 | Msa1267170 | 0.817528 | 3.146683e-52 | -8.615850e-47 |
| Msa0467440 | Msa1377810 | 0.804140 | 2.491960e-49 | -8.615850e-47 |
| Msa0467440 | Msa1403710 | 0.804109 | 2.529112e-49 | -8.615850e-47 |
| Msa0467440 | Msa1443600 | 0.868960 | 4.425766e-66 | -8.615850e-47 |
| Msa0344810 | Msa0467440 | 0.818707 | 1.703146e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467440 | MtrunA17_Chr3g0121841 | 97.115 | 416 | 1 | 1 | 1 | 405 | 1 | 416 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467440 | AT2G31970.1 | 74.038 | 416 | 97 | 1 | 1 | 405 | 1 | 416 | 0.0 | 620 |
Find 88 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGTTTCGAAGGCCATTT+TGG | 0.258894 | 3_3:-68730347 | Msa0467440:CDS |
| GAAGGATCTTGAAGATAAAA+AGG | 0.307260 | 3_3:-68726613 | None:intergenic |
| TTCATCAAGATGAAGCAAAT+TGG | 0.311987 | 3_3:-68730309 | Msa0467440:CDS |
| TCTGAAAGATGCGGCTTATA+CGG | 0.315101 | 3_3:-68729918 | Msa0467440:intron |
| GGATGGAAGCATTAAAGATT+TGG | 0.330227 | 3_3:-68727351 | Msa0467440:CDS |
| CAGAACGAAGCACTCTATTT+AGG | 0.336357 | 3_3:-68727253 | Msa0467440:CDS |
| TCAGCACTGAAGGGTGGCTT+TGG | 0.357124 | 3_3:+68726687 | None:intergenic |
| AGGACCGACGATTAGGGTTA+AGG | 0.362266 | 3_3:+68731304 | None:intergenic |
| CTTAATCTGTCCCTTCGTTT+CGG | 0.374062 | 3_3:+68730988 | None:intergenic |
| AAAGACTTACAAGCTGAAAC+TGG | 0.374719 | 3_3:-68729954 | Msa0467440:CDS |
| GGACCGACGATTAGGGTTAA+GGG | 0.379952 | 3_3:+68731305 | None:intergenic |
| CACCGTTAGGACCGACGATT+AGG | 0.389958 | 3_3:+68731297 | None:intergenic |
| TAAAACATTGAAACATTTGC+TGG | 0.399701 | 3_3:-68727306 | Msa0467440:CDS |
| TTCGCTCCACTGAAGGTTGC+GGG | 0.400459 | 3_3:-68731016 | Msa0467440:intron |
| GTGATGACGTTCTTGTTCTC+CGG | 0.413708 | 3_3:+68731338 | None:intergenic |
| GAAACATTTGCTGGAGCTAA+AGG | 0.414723 | 3_3:-68727297 | Msa0467440:CDS |
| AAACATTTGCTGGAGCTAAA+GGG | 0.420145 | 3_3:-68727296 | Msa0467440:CDS |
| TCGAGAGATTCCTGCGCTCA+TGG | 0.424086 | 3_3:-68730368 | Msa0467440:CDS |
| GATTCCATCAACTCCTCATC+AGG | 0.429278 | 3_3:+68727020 | None:intergenic |
| AATCGTGTAAAATCAAGGTT+GGG | 0.429532 | 3_3:-68726645 | Msa0467440:CDS |
| AGACCATCGATAACTCCATC+TGG | 0.430893 | 3_3:-68726896 | Msa0467440:CDS |
| TGTTCTCCGGGTCGAAACTT+CGG | 0.445761 | 3_3:+68731351 | None:intergenic |
| CTGTGACCAGACCTAGCATT+AGG | 0.448470 | 3_3:+68731140 | None:intergenic |
| AGAACCTGATGAGGAGTTGA+TGG | 0.454055 | 3_3:-68727024 | Msa0467440:CDS |
| TAGGGTTAAGGGTTTGAAGA+AGG | 0.454499 | 3_3:+68731316 | None:intergenic |
| TGCGCTCATGGGTGTTTCGA+AGG | 0.462259 | 3_3:-68730356 | Msa0467440:CDS |
| AACTTCTTCTTTAACGTGGA+AGG | 0.469089 | 3_3:+68730274 | None:intergenic |
| GACCTTGAGGAGGAGTTTGA+AGG | 0.472709 | 3_3:-68727209 | Msa0467440:intron |
| CAAAGCATCCTCAGCACTGA+AGG | 0.480099 | 3_3:+68726677 | None:intergenic |
| TGATGACGTTCTTGTTCTCC+GGG | 0.487340 | 3_3:+68731339 | None:intergenic |
| CGAGAGATTCCTGCGCTCAT+GGG | 0.488137 | 3_3:-68730367 | Msa0467440:CDS |
| TCGATGGTCTTCTTGAGGAC+AGG | 0.496469 | 3_3:+68726909 | None:intergenic |
| CTCCGGTTCAAAACCGCTGC+CGG | 0.497097 | 3_3:-68730965 | Msa0467440:CDS |
| TAATCGTGTAAAATCAAGGT+TGG | 0.498249 | 3_3:-68726646 | Msa0467440:CDS |
| TGCTTGAAGCTTTCTTGCAC+CGG | 0.498569 | 3_3:-68731173 | Msa0467440:CDS |
| ACTTCTTCTTTAACGTGGAA+GGG | 0.504784 | 3_3:+68730275 | None:intergenic |
| GTAGAGACGTGGTTTGCATA+AGG | 0.505155 | 3_3:-68730943 | Msa0467440:CDS |
| TCACTAATCGTGTAAAATCA+AGG | 0.509390 | 3_3:-68726650 | Msa0467440:CDS |
| ACCCTAATCGTCGGTCCTAA+CGG | 0.510798 | 3_3:-68731299 | Msa0467440:CDS |
| TTACCTCCTAATGCTAGGTC+TGG | 0.517145 | 3_3:-68731146 | Msa0467440:CDS |
| TAGCTTGCTGATCTCCCAGA+TGG | 0.524768 | 3_3:+68726881 | None:intergenic |
| ACAAACACAAATAAGCAAGT+TGG | 0.531132 | 3_3:-68726964 | Msa0467440:CDS |
| GATCAGATACAGCAGTTGGA+TGG | 0.534765 | 3_3:-68727368 | Msa0467440:CDS |
| ATCGTCGGTCCTAACGGTGC+CGG | 0.536266 | 3_3:-68731293 | Msa0467440:CDS |
| TTCGAAACACCCATGAGCGC+AGG | 0.542108 | 3_3:+68730358 | None:intergenic |
| TAGCTATAGATGTGCTGACA+TGG | 0.543605 | 3_3:-68730392 | Msa0467440:CDS |
| AAAAGATCAGATACAGCAGT+TGG | 0.547994 | 3_3:-68727372 | Msa0467440:CDS |
| TATGCAAACCACGTCTCTAC+CGG | 0.549096 | 3_3:+68730946 | None:intergenic |
| ATCGTGTAAAATCAAGGTTG+GGG | 0.557025 | 3_3:-68726644 | Msa0467440:CDS |
| ACCGTTAGGACCGACGATTA+GGG | 0.558660 | 3_3:+68731298 | None:intergenic |
| AACCACGTCTCTACCGGCAG+CGG | 0.559352 | 3_3:+68730952 | None:intergenic |
| AACATTTGCTGGAGCTAAAG+GGG | 0.569155 | 3_3:-68727295 | Msa0467440:CDS |
| CAGATACACAAAGGCACTTG+AGG | 0.579073 | 3_3:-68730014 | Msa0467440:CDS |
| GTGAGTTACCTCCTAATGCT+AGG | 0.580225 | 3_3:-68731151 | Msa0467440:CDS |
| AAGAAAAGCAACAATGAGTA+CGG | 0.580808 | 3_3:-68731399 | Msa0467440:exon |
| TGTCAGCACATCTATAGCTA+AGG | 0.585988 | 3_3:+68730395 | None:intergenic |
| TTCAAACTCCTCCTCAAGGT+CGG | 0.589692 | 3_3:+68727211 | None:intergenic |
| AACGTGGAAGGGTCTTGAAG+TGG | 0.594774 | 3_3:+68730286 | None:intergenic |
| CTCCCAGATGGAGTTATCGA+TGG | 0.597692 | 3_3:+68726893 | None:intergenic |
| GACCATCGATAACTCCATCT+GGG | 0.597732 | 3_3:-68726895 | Msa0467440:CDS |
| GGACGCTAAAATTGATCATG+TGG | 0.597893 | 3_3:-68727330 | Msa0467440:CDS |
| GTGGACAAGATGCTGATCAA+AGG | 0.598421 | 3_3:-68731377 | Msa0467440:CDS |
| AGTTATCGATGGTCTTCTTG+AGG | 0.606694 | 3_3:+68726904 | None:intergenic |
| GCATCCTCAGCACTGAAGGG+TGG | 0.608278 | 3_3:+68726681 | None:intergenic |
| ATCAAACTTCTTCTTTAACG+TGG | 0.610212 | 3_3:+68730270 | None:intergenic |
| TCTTCAAACTCTGAAAGATG+CGG | 0.614509 | 3_3:-68729927 | Msa0467440:CDS |
| CGAAGGGACAGATTAAGCTC+CGG | 0.615621 | 3_3:-68730982 | Msa0467440:CDS |
| TGCAGGCTCACATGTCTCTG+AGG | 0.618854 | 3_3:-68726767 | Msa0467440:intron |
| ATATTTATTAGAACCTGATG+AGG | 0.621136 | 3_3:-68727033 | Msa0467440:intron |
| CACCTTCAAACTCCTCCTCA+AGG | 0.624156 | 3_3:+68727207 | None:intergenic |
| AACCGCTGCCGGTAGAGACG+TGG | 0.628955 | 3_3:-68730954 | Msa0467440:CDS |
| GAAGCAATATTCCGACCTTG+AGG | 0.629350 | 3_3:-68727222 | Msa0467440:CDS |
| TGCGGGAGAAACCGAAACGA+AGG | 0.631254 | 3_3:-68730999 | Msa0467440:CDS |
| AAAGCCACCCTTCAGTGCTG+AGG | 0.638736 | 3_3:-68726685 | Msa0467440:CDS |
| GCAATATTCCGACCTTGAGG+AGG | 0.639352 | 3_3:-68727219 | Msa0467440:CDS |
| CAGCTTCATTCACGACCCCA+AGG | 0.645705 | 3_3:-68731120 | Msa0467440:intron |
| TGAACAAACAGTGAGTGACT+CGG | 0.645786 | 3_3:-68731435 | Msa0467440:five_prime_UTR |
| TGACCAGACCTAGCATTAGG+AGG | 0.650160 | 3_3:+68731143 | None:intergenic |
| AAAGCATCCTCAGCACTGAA+GGG | 0.652918 | 3_3:+68726678 | None:intergenic |
| AAACCCTTAACCCTAATCGT+CGG | 0.673783 | 3_3:-68731308 | Msa0467440:CDS |
| TCGTGTAAAATCAAGGTTGG+GGG | 0.676575 | 3_3:-68726643 | Msa0467440:CDS |
| AGCATTAGGAGGTAACTCAC+CGG | 0.679949 | 3_3:+68731154 | None:intergenic |
| AGGCATCCGAAGTTTCGACC+CGG | 0.680747 | 3_3:-68731357 | Msa0467440:CDS |
| GCGGGAGAAACCGAAACGAA+GGG | 0.681553 | 3_3:-68730998 | Msa0467440:CDS |
| GGTTATAAAGAAACTTCACA+AGG | 0.683172 | 3_3:-68729993 | Msa0467440:CDS |
| AAAAGCAACAATGAGTACGG+TGG | 0.702967 | 3_3:-68731396 | Msa0467440:exon |
| TGTACTGAGCAGATACACAA+AGG | 0.715032 | 3_3:-68730023 | Msa0467440:intron |
| GCTTCGGGAAAACATCACAC+AGG | 0.717999 | 3_3:-68727417 | Msa0467440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | chr3_3:68727538-68727557 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr3_3:68728923-68728942 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr3_3:68728924-68728943 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr3_3:68728923-68728942 | Msa0467440:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr3_3:68728924-68728943 | Msa0467440:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr3_3:68728923-68728942 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr3_3:68728924-68728943 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+CGG | - | chr3_3:68728924-68728943 | Msa0467440:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr3_3:68728924-68728943 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr3_3:68728923-68728942 | None:intergenic | 0.0% |
| !! | ATTTCCTTATATTTATATTA+TGG | - | chr3_3:68727561-68727580 | Msa0467440:intron | 10.0% |
| !! | ATTTGTAATAAAATAAAAGT+GGG | + | chr3_3:68728668-68728687 | None:intergenic | 10.0% |
| !! | TATTTGTAATAAAATAAAAG+TGG | + | chr3_3:68728669-68728688 | None:intergenic | 10.0% |
| !! | TATATATATATATATATAGG+GGG | - | chr3_3:68728942-68728961 | Msa0467440:intron | 10.0% |
| !!! | TTTAAGTTACTTAAAATTAA+AGG | - | chr3_3:68729056-68729075 | Msa0467440:intron | 10.0% |
| !! | CAAAAAAAAAAAAAAAACAA+AGG | + | chr3_3:68729176-68729195 | None:intergenic | 10.0% |
| !!! | CTTTGTTTTTTTTTTTTTTT+TGG | - | chr3_3:68729174-68729193 | Msa0467440:intron | 10.0% |
| !! | ATATATATATATATATATGG+GGG | + | chr3_3:68728921-68728940 | None:intergenic | 10.0% |
| !! | TATATATATATATATATACG+GGG | - | chr3_3:68729676-68729695 | Msa0467440:intron | 10.0% |
| !! | ATTAGATTAAAATAAATTGA+AGG | + | chr3_3:68729753-68729772 | None:intergenic | 10.0% |
| !!! | TTCAATTTATTTTAATCTAA+TGG | - | chr3_3:68729752-68729771 | Msa0467440:intron | 10.0% |
| !!! | ATTATCTTTTATACATAAAT+TGG | + | chr3_3:68730026-68730045 | None:intergenic | 10.0% |
| !! | CATACCATAATATAAATATA+AGG | + | chr3_3:68727568-68727587 | None:intergenic | 15.0% |
| !!! | AAATATAACATTTTCCAAAA+TGG | + | chr3_3:68727748-68727767 | None:intergenic | 15.0% |
| !! | TATTAAAATATAGAATAGCA+AGG | + | chr3_3:68728236-68728255 | None:intergenic | 15.0% |
| !! | TCAAGAAAAAAAAGAAAAAT+AGG | + | chr3_3:68729203-68729222 | None:intergenic | 15.0% |
| !!! | AAAAAATAGTTGATAGTTAA+TGG | + | chr3_3:68729272-68729291 | None:intergenic | 15.0% |
| !!! | TTAATTTGAATAGAAACAAA+AGG | - | chr3_3:68729547-68729566 | Msa0467440:intron | 15.0% |
| !! | TAATTTGAATAGAAACAAAA+GGG | - | chr3_3:68729548-68729567 | Msa0467440:intron | 15.0% |
| !!! | TTCCATTTATTTTAATCTAA+TGG | + | chr3_3:68730278-68730297 | None:intergenic | 15.0% |
| !! | ATTAGATTAAAATAAATGGA+AGG | - | chr3_3:68730277-68730296 | Msa0467440:CDS | 15.0% |
| !! | TATATATATATATATAGGGA+GGG | + | chr3_3:68730350-68730369 | None:intergenic | 15.0% |
| !! | ATATATATATATATATAGGG+AGG | + | chr3_3:68728943-68728962 | None:intergenic | 15.0% |
| !! | TCATAGATTACTTATTTATA+TGG | + | chr3_3:68730486-68730505 | None:intergenic | 15.0% |
| !! | AAACTTACAATATATTATGA+TGG | + | chr3_3:68731003-68731022 | None:intergenic | 15.0% |
| !!! | GCATTAAAAATATTTTTGAT+AGG | - | chr3_3:68731350-68731369 | Msa0467440:CDS | 15.0% |
| !!! | GAAGAAAAAACACTTTATTT+TGG | - | chr3_3:68728466-68728485 | Msa0467440:intron | 20.0% |
| !!! | TATTTAAAACTAATAGCTTG+AGG | - | chr3_3:68728580-68728599 | Msa0467440:intron | 20.0% |
| !!! | ATTTAAAACTAATAGCTTGA+GGG | - | chr3_3:68728581-68728600 | Msa0467440:intron | 20.0% |
| !!! | ATTTTATTACAAATAGCTTG+AGG | - | chr3_3:68728674-68728693 | Msa0467440:intron | 20.0% |
| !!! | TTTTATTACAAATAGCTTGA+GGG | - | chr3_3:68728675-68728694 | Msa0467440:intron | 20.0% |
| !!! | ATTTTATAACAAATAGCTTG+AGG | - | chr3_3:68728767-68728786 | Msa0467440:intron | 20.0% |
| !!! | TTTTATAACAAATAGCTTGA+GGG | - | chr3_3:68728768-68728787 | Msa0467440:intron | 20.0% |
| !!! | TGTAAACCAATTTAAAGTAA+GGG | + | chr3_3:68728810-68728829 | None:intergenic | 20.0% |
| !!! | GATTACCCATTTTATTATTT+CGG | + | chr3_3:68729353-68729372 | None:intergenic | 20.0% |
| !! | GAAATAATAAAATGGGTAAT+CGG | - | chr3_3:68729352-68729371 | Msa0467440:intron | 20.0% |
| !!! | TTAATGTTTTCCTACTTTTT+CGG | + | chr3_3:68729396-68729415 | None:intergenic | 20.0% |
| !!! | TGTTTTAGTAAAACATAAGT+GGG | - | chr3_3:68729571-68729590 | Msa0467440:intron | 20.0% |
| !! | AGATGAATTAGCAATTAATT+TGG | + | chr3_3:68730251-68730270 | None:intergenic | 20.0% |
| !! | ACAACAATAAATTGAATCAT+TGG | + | chr3_3:68730060-68730079 | None:intergenic | 20.0% |
| !!! | TATTATATTGTGTTGATGAT+CGG | - | chr3_3:68730144-68730163 | Msa0467440:intron | 20.0% |
| !! | AGATGAATTAGCAATTAATT+AGG | - | chr3_3:68730251-68730270 | Msa0467440:CDS | 20.0% |
| !! | GACCATTAGATTAAAATAAA+TGG | - | chr3_3:68730273-68730292 | Msa0467440:CDS | 20.0% |
| !!! | AAGTTTGCTATCTTTAATAT+TGG | - | chr3_3:68730457-68730476 | Msa0467440:intron | 20.0% |
| !!! | TATTTTTGATAGGTATAACT+TGG | - | chr3_3:68731360-68731379 | Msa0467440:CDS | 20.0% |
| !!! | ATTTTTGATAGGTATAACTT+GGG | - | chr3_3:68731361-68731380 | Msa0467440:CDS | 20.0% |
| !! | ATGATATATTTTCTGCAACT+CGG | - | chr3_3:68727829-68727848 | Msa0467440:intron | 25.0% |
| ! | TTGAATTGTGATAGGTTTAA+CGG | + | chr3_3:68727902-68727921 | None:intergenic | 25.0% |
| ! | CTATATGTTTGAATTGTGAT+AGG | + | chr3_3:68727910-68727929 | None:intergenic | 25.0% |
| !!! | TTTTCTAGAGTTTATGTTCA+AGG | + | chr3_3:68728260-68728279 | None:intergenic | 25.0% |
| ! | AAATAAAAGTGAGTCTAAGT+TGG | + | chr3_3:68728751-68728770 | None:intergenic | 25.0% |
| ! | AACTATCCCTTACTTTAAAT+TGG | - | chr3_3:68728801-68728820 | Msa0467440:intron | 25.0% |
| !! | GTGTAAACCAATTTAAAGTA+AGG | + | chr3_3:68728811-68728830 | None:intergenic | 25.0% |
| !! | TTTAAATTGGTTTACACTAG+TGG | - | chr3_3:68728814-68728833 | Msa0467440:intron | 25.0% |
| !!! | GTTTTTTTGTCCAAATGAAA+AGG | - | chr3_3:68728843-68728862 | Msa0467440:intron | 25.0% |
| !!! | CTTTTTGGTAAATAACTAGT+AGG | + | chr3_3:68729020-68729039 | None:intergenic | 25.0% |
| ! | AACTTAAAATTGTGATGAGT+GGG | + | chr3_3:68729044-68729063 | None:intergenic | 25.0% |
| ! | TAACTTAAAATTGTGATGAG+TGG | + | chr3_3:68729045-68729064 | None:intergenic | 25.0% |
| ! | AAAAAAAAACAAAGGAAGCA+TGG | + | chr3_3:68729168-68729187 | None:intergenic | 25.0% |
| !! | AAAAAAAAGTGTGTAGTGTA+TGG | + | chr3_3:68729231-68729250 | None:intergenic | 25.0% |
| ! | AAACATTAATGTTTCAAGCT+AGG | - | chr3_3:68729407-68729426 | Msa0467440:intron | 25.0% |
| !!! | GTGTTTTAGTAAAACATAAG+TGG | - | chr3_3:68729570-68729589 | Msa0467440:intron | 25.0% |
| ! | ATATATATATATATACGGGG+AGG | - | chr3_3:68729679-68729698 | Msa0467440:intron | 25.0% |
| ! | TATATATATATATACGGGGA+GGG | - | chr3_3:68729680-68729699 | Msa0467440:intron | 25.0% |
| ! | ATAAATTGAAGGTAGTGATT+TGG | + | chr3_3:68729742-68729761 | None:intergenic | 25.0% |
| !! | TCAATAATTTTCTTCAACAG+AGG | + | chr3_3:68730089-68730108 | None:intergenic | 25.0% |
| !! | TTCTCTTTTCCATCTATTTT+GGG | + | chr3_3:68730613-68730632 | None:intergenic | 25.0% |
| !! | ATTCTCTTTTCCATCTATTT+TGG | + | chr3_3:68730614-68730633 | None:intergenic | 25.0% |
| ! | AGCTATAAGGAAATAAGATA+AGG | + | chr3_3:68730644-68730663 | None:intergenic | 25.0% |
| !! | ATCTTATTTCCTTATAGCTT+CGG | - | chr3_3:68730645-68730664 | Msa0467440:intron | 25.0% |
| ! | TAAAACATTGAAACATTTGC+TGG | - | chr3_3:68730772-68730791 | Msa0467440:intron | 25.0% |
| !! | GAAAAGTACGAATTTAAAAC+TGG | + | chr3_3:68730936-68730955 | None:intergenic | 25.0% |
| ! | ATTTATGAGCAGATCTAATA+AGG | + | chr3_3:68730978-68730997 | None:intergenic | 25.0% |
| ! | TTATTAGATCTGCTCATAAA+TGG | - | chr3_3:68730977-68730996 | Msa0467440:CDS | 25.0% |
| ! | ATATTTATTAGAACCTGATG+AGG | - | chr3_3:68731045-68731064 | Msa0467440:intron | 25.0% |
| AAGAAAAGCAACAATGAGTA+CGG | - | chr3_3:68726679-68726698 | Msa0467440:CDS | 30.0% | |
| TGGAAATGAAATGGAACATA+CGG | + | chr3_3:68726816-68726835 | None:intergenic | 30.0% | |
| CAAACTATTAATCCTCATTC+CGG | - | chr3_3:68727218-68727237 | Msa0467440:CDS | 30.0% | |
| TCACTCTTCTAATCAAACTT+AGG | - | chr3_3:68727248-68727267 | Msa0467440:CDS | 30.0% | |
| CACTCTTCTAATCAAACTTA+GGG | - | chr3_3:68727249-68727268 | Msa0467440:CDS | 30.0% | |
| TTATGCAAAAAAGACTCGTT+TGG | - | chr3_3:68727298-68727317 | Msa0467440:CDS | 30.0% | |
| ATAAGCTAGCTAGTTGAATA+TGG | + | chr3_3:68727439-68727458 | None:intergenic | 30.0% | |
| ! | CAAGTATTTAAGACTCTGTT+TGG | + | chr3_3:68727507-68727526 | None:intergenic | 30.0% |
| !! | TTAACTTGACTTGTTTGTTC+TGG | - | chr3_3:68727644-68727663 | Msa0467440:intron | 30.0% |
| TTCATCAAGATGAAGCAAAT+TGG | - | chr3_3:68727769-68727788 | Msa0467440:intron | 30.0% | |
| ATCAAACTTCTTCTTTAACG+TGG | + | chr3_3:68727811-68727830 | None:intergenic | 30.0% | |
| GGTTATAAAGAAACTTCACA+AGG | - | chr3_3:68728085-68728104 | Msa0467440:intron | 30.0% | |
| !!! | ACTTTTGACTTAGAGAACAA+AGG | + | chr3_3:68728298-68728317 | None:intergenic | 30.0% |
| GATAACATTAAAGAGAGTTG+AGG | + | chr3_3:68728500-68728519 | None:intergenic | 30.0% | |
| TAGACCAACAAAAAACATGA+AGG | + | chr3_3:68728889-68728908 | None:intergenic | 30.0% | |
| TTTGTCACTAGTTAATGTTC+TGG | - | chr3_3:68729291-68729310 | Msa0467440:intron | 30.0% | |
| TGTCCACCGAAATAATAAAA+TGG | - | chr3_3:68729344-68729363 | Msa0467440:intron | 30.0% | |
| GTCCACCGAAATAATAAAAT+GGG | - | chr3_3:68729345-68729364 | Msa0467440:intron | 30.0% | |
| ! | TACCCATTTTATTATTTCGG+TGG | + | chr3_3:68729350-68729369 | None:intergenic | 30.0% |
| !!! | CTACTTTTTCGGATGAATAA+TGG | + | chr3_3:68729385-68729404 | None:intergenic | 30.0% |
| CATTATTCATCCGAAAAAGT+AGG | - | chr3_3:68729383-68729402 | Msa0467440:intron | 30.0% | |
| CTAATTTGATCGAAGCAATT+GGG | + | chr3_3:68729866-68729885 | None:intergenic | 30.0% | |
| ! | TTAGCAGGTTTTTCTGATTT+TGG | - | chr3_3:68729882-68729901 | Msa0467440:intron | 30.0% |
| AAACAATCCAATGGTTGATT+GGG | + | chr3_3:68729941-68729960 | None:intergenic | 30.0% | |
| AAAACAATCCAATGGTTGAT+TGG | + | chr3_3:68729942-68729961 | None:intergenic | 30.0% | |
| GATGTAGAAAAACAATCCAA+TGG | + | chr3_3:68729950-68729969 | None:intergenic | 30.0% | |
| TGATCGGAATCTAATCTAAA+TGG | - | chr3_3:68730160-68730179 | Msa0467440:intron | 30.0% | |
| GGAATCTAATCTAAATGGAT+TGG | - | chr3_3:68730165-68730184 | Msa0467440:intron | 30.0% | |
| ATAAATGGAAGGTAGTGATT+TGG | - | chr3_3:68730288-68730307 | Msa0467440:CDS | 30.0% | |
| TAACTCTACTTACTTACTCT+TGG | - | chr3_3:68730313-68730332 | Msa0467440:CDS | 30.0% | |
| ! | TCTTATTTCCTTATAGCTTC+GGG | - | chr3_3:68730646-68730665 | Msa0467440:intron | 30.0% |
| ! | TGCAATCTTTTCATCAAACT+TGG | + | chr3_3:68731089-68731108 | None:intergenic | 30.0% |
| ACAAACACAAATAAGCAAGT+TGG | - | chr3_3:68731114-68731133 | Msa0467440:intron | 30.0% | |
| ! | TTGATTTTACACGATTAGTG+AGG | + | chr3_3:68731429-68731448 | None:intergenic | 30.0% |
| TCACTAATCGTGTAAAATCA+AGG | - | chr3_3:68731428-68731447 | Msa0467440:five_prime_UTR | 30.0% | |
| TAATCGTGTAAAATCAAGGT+TGG | - | chr3_3:68731432-68731451 | Msa0467440:five_prime_UTR | 30.0% | |
| AATCGTGTAAAATCAAGGTT+GGG | - | chr3_3:68731433-68731452 | Msa0467440:five_prime_UTR | 30.0% | |
| !! | GTGCTGATTTGGAAATGAAA+TGG | + | chr3_3:68726825-68726844 | None:intergenic | 35.0% |
| !! | ATTGAATGAGAGTGCTGATT+TGG | + | chr3_3:68726836-68726855 | None:intergenic | 35.0% |
| !! | CACACAAAAAGCATCTAAGA+TGG | - | chr3_3:68727169-68727188 | Msa0467440:intron | 35.0% |
| !!! | ACTTAGGGTATTTTTAGCAC+AGG | - | chr3_3:68727264-68727283 | Msa0467440:CDS | 35.0% |
| !!! | CTTAGGGTATTTTTAGCACA+GGG | - | chr3_3:68727265-68727284 | Msa0467440:CDS | 35.0% |
| ACTTCTTCTTTAACGTGGAA+GGG | + | chr3_3:68727806-68727825 | None:intergenic | 35.0% | |
| AACTTCTTCTTTAACGTGGA+AGG | + | chr3_3:68727807-68727826 | None:intergenic | 35.0% | |
| ATGAAAGAGGGATAAGTAGA+AGG | + | chr3_3:68727857-68727876 | None:intergenic | 35.0% | |
| GGAACAAGAGAAATGAAAGA+GGG | + | chr3_3:68727869-68727888 | None:intergenic | 35.0% | |
| AGGAACAAGAGAAATGAAAG+AGG | + | chr3_3:68727870-68727889 | None:intergenic | 35.0% | |
| TCCATTTCCATTTAACGTAC+TGG | - | chr3_3:68727972-68727991 | Msa0467440:intron | 35.0% | |
| TCCAGTACGTTAAATGGAAA+TGG | + | chr3_3:68727976-68727995 | None:intergenic | 35.0% | |
| TTTCCATTTAACGTACTGGA+TGG | - | chr3_3:68727976-68727995 | Msa0467440:intron | 35.0% | |
| AATCCATCCAGTACGTTAAA+TGG | + | chr3_3:68727982-68728001 | None:intergenic | 35.0% | |
| TGTTGTTCTTGACTTAGAGT+TGG | - | chr3_3:68728015-68728034 | Msa0467440:intron | 35.0% | |
| AAAGACTTACAAGCTGAAAC+TGG | - | chr3_3:68728124-68728143 | Msa0467440:intron | 35.0% | |
| ! | TCTTCAAACTCTGAAAGATG+CGG | - | chr3_3:68728151-68728170 | Msa0467440:intron | 35.0% |
| ! | AAACTCTAGAAAATCCCTGA+TGG | - | chr3_3:68728267-68728286 | Msa0467440:intron | 35.0% |
| AAGACACAGTGACACAAAAA+GGG | + | chr3_3:68728383-68728402 | None:intergenic | 35.0% | |
| AAAGACACAGTGACACAAAA+AGG | + | chr3_3:68728384-68728403 | None:intergenic | 35.0% | |
| !! | TTTGTGTCACTGTGTCTTTT+TGG | - | chr3_3:68728385-68728404 | Msa0467440:intron | 35.0% |
| !! | TTGTGTCACTGTGTCTTTTT+GGG | - | chr3_3:68728386-68728405 | Msa0467440:intron | 35.0% |
| ATGAGAATGTTGCGTTGAAT+GGG | + | chr3_3:68728554-68728573 | None:intergenic | 35.0% | |
| ! | TGGTTTACACTAGTGGATAT+TGG | - | chr3_3:68728821-68728840 | Msa0467440:intron | 35.0% |
| !! | CAAAAGTGCACCTTTTCATT+TGG | + | chr3_3:68728856-68728875 | None:intergenic | 35.0% |
| !!! | TGGACCTTCATGTTTTTTGT+TGG | - | chr3_3:68728882-68728901 | Msa0467440:intron | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr3_3:68729606-68729625 | None:intergenic | 35.0% |
| TAATTAGTTGCCGTCAAACA+CGG | + | chr3_3:68729141-68729160 | None:intergenic | 35.0% | |
| TGCAATTGTTGCAAATGTCA+CGG | - | chr3_3:68729452-68729471 | Msa0467440:intron | 35.0% | |
| GGAAATTCTGCTGAATAAGT+AGG | - | chr3_3:68729473-68729492 | Msa0467440:intron | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr3_3:68729606-68729625 | Msa0467440:intron | 35.0% |
| TAACTCTACTTACGTACTCT+TGG | + | chr3_3:68729717-68729736 | None:intergenic | 35.0% | |
| GCTAATTTGATCGAAGCAAT+TGG | + | chr3_3:68729867-68729886 | None:intergenic | 35.0% | |
| ATTGCTTCGATCAAATTAGC+AGG | - | chr3_3:68729867-68729886 | Msa0467440:intron | 35.0% | |
| !! | TGGTGATTAGAAAGTGTCTT+CGG | + | chr3_3:68730584-68730603 | None:intergenic | 35.0% |
| !!! | CCATCTATTTTGGGACATTA+TGG | + | chr3_3:68730604-68730623 | None:intergenic | 35.0% |
| CCATAATGTCCCAAAATAGA+TGG | - | chr3_3:68730601-68730620 | Msa0467440:intron | 35.0% | |
| AAAAGATCAGATACAGCAGT+TGG | - | chr3_3:68730706-68730725 | Msa0467440:intron | 35.0% | |
| !! | GGATGGAAGCATTAAAGATT+TGG | - | chr3_3:68730727-68730746 | Msa0467440:intron | 35.0% |
| ! | AAACATTTGCTGGAGCTAAA+GGG | - | chr3_3:68730782-68730801 | Msa0467440:intron | 35.0% |
| CTATTGTAATGCATATGCCA+TGG | + | chr3_3:68730909-68730928 | None:intergenic | 35.0% | |
| ! | TTTTCTCTGATTCAAACTGC+AGG | - | chr3_3:68731294-68731313 | Msa0467440:CDS | 35.0% |
| ATCGTGTAAAATCAAGGTTG+GGG | - | chr3_3:68731434-68731453 | Msa0467440:five_prime_UTR | 35.0% | |
| TGAACAAACAGTGAGTGACT+CGG | - | chr3_3:68726643-68726662 | Msa0467440:CDS | 40.0% | |
| AAAAGCAACAATGAGTACGG+TGG | - | chr3_3:68726682-68726701 | Msa0467440:CDS | 40.0% | |
| TAGGGTTAAGGGTTTGAAGA+AGG | + | chr3_3:68726765-68726784 | None:intergenic | 40.0% | |
| AAACCCTTAACCCTAATCGT+CGG | - | chr3_3:68726770-68726789 | Msa0467440:intron | 40.0% | |
| ! | AATGGAACATACGGTTTTGC+CGG | + | chr3_3:68726807-68726826 | None:intergenic | 40.0% |
| CTTAATCTGTCCCTTCGTTT+CGG | + | chr3_3:68727093-68727112 | None:intergenic | 40.0% | |
| TGTCAGCACATCTATAGCTA+AGG | + | chr3_3:68727686-68727705 | None:intergenic | 40.0% | |
| ! | TAGCTATAGATGTGCTGACA+TGG | - | chr3_3:68727686-68727705 | Msa0467440:intron | 40.0% |
| TGTACTGAGCAGATACACAA+AGG | - | chr3_3:68728055-68728074 | Msa0467440:intron | 40.0% | |
| TCTGAAAGATGCGGCTTATA+CGG | - | chr3_3:68728160-68728179 | Msa0467440:intron | 40.0% | |
| ! | GAACAAAGGCATATCCATCA+GGG | + | chr3_3:68728284-68728303 | None:intergenic | 40.0% |
| ! | AGAACAAAGGCATATCCATC+AGG | + | chr3_3:68728285-68728304 | None:intergenic | 40.0% |
| !! | TGTGTCACTGTGTCTTTTTG+GGG | - | chr3_3:68728387-68728406 | Msa0467440:intron | 40.0% |
| GATGAGAATGTTGCGTTGAA+TGG | + | chr3_3:68728555-68728574 | None:intergenic | 40.0% | |
| ! | GTGAGTCTAAGTTGGCAAAT+TGG | + | chr3_3:68728743-68728762 | None:intergenic | 40.0% |
| ! | AAGGTGCACTTTTGCTAACT+TGG | - | chr3_3:68728862-68728881 | Msa0467440:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr3_3:68729610-68729629 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr3_3:68729609-68729628 | None:intergenic | 40.0% |
| ! | TTGTGATGAGTGGGACTTTT+TGG | + | chr3_3:68729035-68729054 | None:intergenic | 40.0% |
| ACAATCAGTTCCGTGTTTGA+CGG | - | chr3_3:68729128-68729147 | Msa0467440:intron | 40.0% | |
| GTCACTAGTTAATGTTCTGG+AGG | - | chr3_3:68729294-68729313 | Msa0467440:intron | 40.0% | |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr3_3:68729609-68729628 | Msa0467440:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr3_3:68729610-68729629 | Msa0467440:intron | 40.0% |
| GATCGGAAAGAAACGAAAAG+GGG | + | chr3_3:68729834-68729853 | None:intergenic | 40.0% | |
| GGATCGGAAAGAAACGAAAA+GGG | + | chr3_3:68729835-68729854 | None:intergenic | 40.0% | |
| TGGATCGGAAAGAAACGAAA+AGG | + | chr3_3:68729836-68729855 | None:intergenic | 40.0% | |
| TTGATCGAAGCAATTGGGAA+GGG | + | chr3_3:68729861-68729880 | None:intergenic | 40.0% | |
| TTTGATCGAAGCAATTGGGA+AGG | + | chr3_3:68729862-68729881 | None:intergenic | 40.0% | |
| ATTGGCAGTAAGTGTGTGAT+TGG | + | chr3_3:68730008-68730027 | None:intergenic | 40.0% | |
| !! | TAGAAAGTGTCTTCGGGTTA+GGG | + | chr3_3:68730577-68730596 | None:intergenic | 40.0% |
| !! | TTAGAAAGTGTCTTCGGGTT+AGG | + | chr3_3:68730578-68730597 | None:intergenic | 40.0% |
| !! | GGTGATTAGAAAGTGTCTTC+GGG | + | chr3_3:68730583-68730602 | None:intergenic | 40.0% |
| ! | GATGTTTTCCCGAAGCTATA+AGG | + | chr3_3:68730657-68730676 | None:intergenic | 40.0% |
| GGACGCTAAAATTGATCATG+TGG | - | chr3_3:68730748-68730767 | Msa0467440:intron | 40.0% | |
| ! | GAAACATTTGCTGGAGCTAA+AGG | - | chr3_3:68730781-68730800 | Msa0467440:intron | 40.0% |
| ! | AACATTTGCTGGAGCTAAAG+GGG | - | chr3_3:68730783-68730802 | Msa0467440:intron | 40.0% |
| ! | CAGAACGAAGCACTCTATTT+AGG | - | chr3_3:68730825-68730844 | Msa0467440:intron | 40.0% |
| AGTTATCGATGGTCTTCTTG+AGG | + | chr3_3:68731177-68731196 | None:intergenic | 40.0% | |
| AAGCAGCAAGATGTCAGTAT+TGG | + | chr3_3:68731258-68731277 | None:intergenic | 40.0% | |
| AATACTGACATCTTGCTGCT+TGG | - | chr3_3:68731257-68731276 | Msa0467440:intron | 40.0% | |
| TCGTGTAAAATCAAGGTTGG+GGG | - | chr3_3:68731435-68731454 | Msa0467440:five_prime_UTR | 40.0% | |
| GTGGACAAGATGCTGATCAA+AGG | - | chr3_3:68726701-68726720 | Msa0467440:CDS | 45.0% | |
| ! | TGATGACGTTCTTGTTCTCC+GGG | + | chr3_3:68726742-68726761 | None:intergenic | 45.0% |
| ! | GTGATGACGTTCTTGTTCTC+CGG | + | chr3_3:68726743-68726762 | None:intergenic | 45.0% |
| TGCTTGAAGCTTTCTTGCAC+CGG | - | chr3_3:68726905-68726924 | Msa0467440:CDS | 45.0% | |
| AGCATTAGGAGGTAACTCAC+CGG | + | chr3_3:68726927-68726946 | None:intergenic | 45.0% | |
| GTGAGTTACCTCCTAATGCT+AGG | - | chr3_3:68726927-68726946 | Msa0467440:CDS | 45.0% | |
| TTACCTCCTAATGCTAGGTC+TGG | - | chr3_3:68726932-68726951 | Msa0467440:CDS | 45.0% | |
| AGAGAGAGAGAGTAACCTTG+GGG | + | chr3_3:68726976-68726995 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGTAACCTT+GGG | + | chr3_3:68726977-68726996 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGTAACCT+TGG | + | chr3_3:68726978-68726997 | None:intergenic | 45.0% | |
| TATGCAAACCACGTCTCTAC+CGG | + | chr3_3:68727135-68727154 | None:intergenic | 45.0% | |
| ! | GTAGAGACGTGGTTTGCATA+AGG | - | chr3_3:68727135-68727154 | Msa0467440:intron | 45.0% |
| TATTAATCCTCATTCCGGCG+AGG | - | chr3_3:68727223-68727242 | Msa0467440:CDS | 45.0% | |
| TTAGAAGAGTGATACCTCGC+CGG | + | chr3_3:68727240-68727259 | None:intergenic | 45.0% | |
| AGGTTTAACGGCATTACGCA+AGG | + | chr3_3:68727890-68727909 | None:intergenic | 45.0% | |
| !! | CAGATACACAAAGGCACTTG+AGG | - | chr3_3:68728064-68728083 | Msa0467440:intron | 45.0% |
| !!! | ACTCTTTTTTTCCCCTGCCT+TGG | - | chr3_3:68728353-68728372 | Msa0467440:intron | 45.0% |
| !! | GTGTCACTGTGTCTTTTTGG+GGG | - | chr3_3:68728388-68728407 | Msa0467440:intron | 45.0% |
| TTCATGTTTAGCCCATCTCG+AGG | + | chr3_3:68728449-68728468 | None:intergenic | 45.0% | |
| GTTGAATGGGTGGTAAGACT+AGG | + | chr3_3:68728541-68728560 | None:intergenic | 45.0% | |
| AGAATGTTGCGTTGAATGGG+TGG | + | chr3_3:68728551-68728570 | None:intergenic | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr3_3:68728975-68728994 | Msa0467440:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr3_3:68728975-68728994 | None:intergenic | 45.0% | |
| GGAAAGAAACGAAAAGGGGA+GGG | + | chr3_3:68729830-68729849 | None:intergenic | 45.0% | |
| TCCACAACCCAATCAACCAT+TGG | - | chr3_3:68729931-68729950 | Msa0467440:CDS | 45.0% | |
| ! | TCCAATGGTTGATTGGGTTG+TGG | + | chr3_3:68729935-68729954 | None:intergenic | 45.0% |
| TGGAAACAATCGCATGAAGC+AGG | - | chr3_3:68730185-68730204 | Msa0467440:intron | 45.0% | |
| GATCAGATACAGCAGTTGGA+TGG | - | chr3_3:68730710-68730729 | Msa0467440:intron | 45.0% | |
| GAAGCAATATTCCGACCTTG+AGG | - | chr3_3:68730856-68730875 | Msa0467440:intron | 45.0% | |
| TTCAAACTCCTCCTCAAGGT+CGG | + | chr3_3:68730870-68730889 | None:intergenic | 45.0% | |
| !! | AGGTGTGTAAGTGTTGACCA+TGG | - | chr3_3:68730889-68730908 | Msa0467440:CDS | 45.0% |
| AGAACCTGATGAGGAGTTGA+TGG | - | chr3_3:68731054-68731073 | Msa0467440:intron | 45.0% | |
| GATTCCATCAACTCCTCATC+AGG | + | chr3_3:68731061-68731080 | None:intergenic | 45.0% | |
| AGACCATCGATAACTCCATC+TGG | - | chr3_3:68731182-68731201 | Msa0467440:CDS | 45.0% | |
| GACCATCGATAACTCCATCT+GGG | - | chr3_3:68731183-68731202 | Msa0467440:CDS | 45.0% | |
| ! | AAAGCATCCTCAGCACTGAA+GGG | + | chr3_3:68731403-68731422 | None:intergenic | 45.0% |
| !! | TTTCAAAAAATAATAATAAT+CGG | + | chr3_3:68727021-68727040 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+GGG | + | chr3_3:68728922-68728941 | None:intergenic | 5.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr3_3:68728941-68728960 | Msa0467440:intron | 5.0% |
| !! | CAAATTAATTATATATAAAA+GGG | + | chr3_3:68729535-68729554 | None:intergenic | 5.0% |
| !! | TCAAATTAATTATATATAAA+AGG | + | chr3_3:68729536-68729555 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+GGG | + | chr3_3:68728922-68728941 | None:intergenic | 5.0% |
| !! | ATATATATATATATATATAC+GGG | - | chr3_3:68729675-68729694 | Msa0467440:intron | 5.0% |
| TGTTCTCCGGGTCGAAACTT+CGG | + | chr3_3:68726730-68726749 | None:intergenic | 50.0% | |
| GGACCGACGATTAGGGTTAA+GGG | + | chr3_3:68726776-68726795 | None:intergenic | 50.0% | |
| AGGACCGACGATTAGGGTTA+AGG | + | chr3_3:68726777-68726796 | None:intergenic | 50.0% | |
| ACCCTAATCGTCGGTCCTAA+CGG | - | chr3_3:68726779-68726798 | Msa0467440:intron | 50.0% | |
| ACCGTTAGGACCGACGATTA+GGG | + | chr3_3:68726783-68726802 | None:intergenic | 50.0% | |
| TGACCAGACCTAGCATTAGG+AGG | + | chr3_3:68726938-68726957 | None:intergenic | 50.0% | |
| CTGTGACCAGACCTAGCATT+AGG | + | chr3_3:68726941-68726960 | None:intergenic | 50.0% | |
| TTGTGTCTTCGCTCCACTGA+AGG | - | chr3_3:68727055-68727074 | Msa0467440:intron | 50.0% | |
| CGAAGGGACAGATTAAGCTC+CGG | - | chr3_3:68727096-68727115 | Msa0467440:intron | 50.0% | |
| ! | GGGTGTTTCGAAGGCCATTT+TGG | - | chr3_3:68727731-68727750 | Msa0467440:intron | 50.0% |
| AACGTGGAAGGGTCTTGAAG+TGG | + | chr3_3:68727795-68727814 | None:intergenic | 50.0% | |
| ! | AAAAAGGGCACACCAAGGCA+GGG | + | chr3_3:68728368-68728387 | None:intergenic | 50.0% |
| ! | GACACAAAAAGGGCACACCA+AGG | + | chr3_3:68728373-68728392 | None:intergenic | 50.0% |
| CTTCCTGCTTCACTCCACTT+CGG | + | chr3_3:68728414-68728433 | None:intergenic | 50.0% | |
| AGTTCTGCTATGCCTCGAGA+TGG | - | chr3_3:68728434-68728453 | Msa0467440:intron | 50.0% | |
| GTTCTGCTATGCCTCGAGAT+GGG | - | chr3_3:68728435-68728454 | Msa0467440:intron | 50.0% | |
| AATGGGTGGTAAGACTAGGC+GGG | + | chr3_3:68728537-68728556 | None:intergenic | 50.0% | |
| GAATGGGTGGTAAGACTAGG+CGG | + | chr3_3:68728538-68728557 | None:intergenic | 50.0% | |
| CGGAAAGAAACGAAAAGGGG+AGG | + | chr3_3:68729831-68729850 | None:intergenic | 50.0% | |
| CAATTGGGAAGGGAGTGGAT+CGG | + | chr3_3:68729851-68729870 | None:intergenic | 50.0% | |
| CGCATGAAGCAGGTTCACAT+AGG | - | chr3_3:68730195-68730214 | Msa0467440:intron | 50.0% | |
| GCTTCGGGAAAACATCACAC+AGG | - | chr3_3:68730661-68730680 | Msa0467440:intron | 50.0% | |
| GCAATATTCCGACCTTGAGG+AGG | - | chr3_3:68730859-68730878 | Msa0467440:intron | 50.0% | |
| GACCTTGAGGAGGAGTTTGA+AGG | - | chr3_3:68730869-68730888 | Msa0467440:intron | 50.0% | |
| CACCTTCAAACTCCTCCTCA+AGG | + | chr3_3:68730874-68730893 | None:intergenic | 50.0% | |
| TCGATGGTCTTCTTGAGGAC+AGG | + | chr3_3:68731172-68731191 | None:intergenic | 50.0% | |
| CTCCCAGATGGAGTTATCGA+TGG | + | chr3_3:68731188-68731207 | None:intergenic | 50.0% | |
| !! | TAGCTTGCTGATCTCCCAGA+TGG | + | chr3_3:68731200-68731219 | None:intergenic | 50.0% |
| ! | CAAAGCATCCTCAGCACTGA+AGG | + | chr3_3:68731404-68731423 | None:intergenic | 50.0% |
| AAGGTTGGGGGATCTTGAGA+AGG | - | chr3_3:68731447-68731466 | Msa0467440:five_prime_UTR | 50.0% | |
| AGGCATCCGAAGTTTCGACC+CGG | - | chr3_3:68726721-68726740 | Msa0467440:CDS | 55.0% | |
| CACCGTTAGGACCGACGATT+AGG | + | chr3_3:68726784-68726803 | None:intergenic | 55.0% | |
| CAGCTTCATTCACGACCCCA+AGG | - | chr3_3:68726958-68726977 | Msa0467440:CDS | 55.0% | |
| CTTCGCTCCACTGAAGGTTG+CGG | - | chr3_3:68727061-68727080 | Msa0467440:intron | 55.0% | |
| TTCGCTCCACTGAAGGTTGC+GGG | - | chr3_3:68727062-68727081 | Msa0467440:intron | 55.0% | |
| GTTTCTCCCGCAACCTTCAG+TGG | + | chr3_3:68727071-68727090 | None:intergenic | 55.0% | |
| TGCGGGAGAAACCGAAACGA+AGG | - | chr3_3:68727079-68727098 | Msa0467440:intron | 55.0% | |
| GCGGGAGAAACCGAAACGAA+GGG | - | chr3_3:68727080-68727099 | Msa0467440:intron | 55.0% | |
| !!! | TACCGGCAGCGGTTTTGAAC+CGG | + | chr3_3:68727118-68727137 | None:intergenic | 55.0% |
| AGTGATACCTCGCCGGAATG+AGG | + | chr3_3:68727233-68727252 | None:intergenic | 55.0% | |
| TCGAGAGATTCCTGCGCTCA+TGG | - | chr3_3:68727710-68727729 | Msa0467440:intron | 55.0% | |
| CGAGAGATTCCTGCGCTCAT+GGG | - | chr3_3:68727711-68727730 | Msa0467440:intron | 55.0% | |
| TTCGAAACACCCATGAGCGC+AGG | + | chr3_3:68727723-68727742 | None:intergenic | 55.0% | |
| TGCGCTCATGGGTGTTTCGA+AGG | - | chr3_3:68727722-68727741 | Msa0467440:intron | 55.0% | |
| ! | AAAAGGGCACACCAAGGCAG+GGG | + | chr3_3:68728367-68728386 | None:intergenic | 55.0% |
| ! | CAAAAAGGGCACACCAAGGC+AGG | + | chr3_3:68728369-68728388 | None:intergenic | 55.0% |
| !! | TGTCTTTTTGGGGGCCGAAG+TGG | - | chr3_3:68728397-68728416 | Msa0467440:intron | 55.0% |
| GTGGTAAGACTAGGCGGGAT+AGG | + | chr3_3:68728532-68728551 | None:intergenic | 55.0% | |
| CGAAGCAATTGGGAAGGGAG+TGG | + | chr3_3:68729856-68729875 | None:intergenic | 55.0% | |
| TGCAGGCTCACATGTCTCTG+AGG | - | chr3_3:68731311-68731330 | Msa0467440:CDS | 55.0% | |
| ! | TCAGCACTGAAGGGTGGCTT+TGG | + | chr3_3:68731394-68731413 | None:intergenic | 55.0% |
| AAAGCCACCCTTCAGTGCTG+AGG | - | chr3_3:68731393-68731412 | Msa0467440:exon | 55.0% | |
| ATCGTCGGTCCTAACGGTGC+CGG | - | chr3_3:68726785-68726804 | Msa0467440:intron | 60.0% | |
| ! | ACGGTTTTGCCGGCACCGTT+AGG | + | chr3_3:68726797-68726816 | None:intergenic | 60.0% |
| CTCCGGTTCAAAACCGCTGC+CGG | - | chr3_3:68727113-68727132 | Msa0467440:intron | 60.0% | |
| AACCACGTCTCTACCGGCAG+CGG | + | chr3_3:68727129-68727148 | None:intergenic | 60.0% | |
| ! | GCATCCTCAGCACTGAAGGG+TGG | + | chr3_3:68731400-68731419 | None:intergenic | 60.0% |
| AACCGCTGCCGGTAGAGACG+TGG | - | chr3_3:68727124-68727143 | Msa0467440:intron | 65.0% | |
| GGGCCGAAGTGGAGTGAAGC+AGG | - | chr3_3:68728408-68728427 | Msa0467440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 68726614 | 68731486 | 68726614 | ID=Msa0467440;Name=Msa0467440 |
| chr3_3 | mRNA | 68726614 | 68731486 | 68726614 | ID=Msa0467440-mRNA-1;Parent=Msa0467440;Name=Msa0467440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=78|0.85|0.75|1|1|1|8|0|405 |
| chr3_3 | exon | 68726614 | 68726784 | 68726614 | ID=Msa0467440-mRNA-1:exon:16064;Parent=Msa0467440-mRNA-1 |
| chr3_3 | exon | 68726866 | 68727044 | 68726866 | ID=Msa0467440-mRNA-1:exon:16063;Parent=Msa0467440-mRNA-1 |
| chr3_3 | exon | 68727210 | 68727438 | 68727210 | ID=Msa0467440-mRNA-1:exon:16062;Parent=Msa0467440-mRNA-1 |
| chr3_3 | exon | 68729919 | 68730033 | 68729919 | ID=Msa0467440-mRNA-1:exon:16061;Parent=Msa0467440-mRNA-1 |
| chr3_3 | exon | 68730250 | 68730425 | 68730250 | ID=Msa0467440-mRNA-1:exon:16060;Parent=Msa0467440-mRNA-1 |
| chr3_3 | exon | 68730889 | 68731023 | 68730889 | ID=Msa0467440-mRNA-1:exon:16059;Parent=Msa0467440-mRNA-1 |
| chr3_3 | exon | 68731121 | 68731207 | 68731121 | ID=Msa0467440-mRNA-1:exon:16058;Parent=Msa0467440-mRNA-1 |
| chr3_3 | exon | 68731286 | 68731486 | 68731286 | ID=Msa0467440-mRNA-1:exon:16057;Parent=Msa0467440-mRNA-1 |
| chr3_3 | five_prime_UTR | 68731409 | 68731486 | 68731409 | ID=Msa0467440-mRNA-1:five_prime_utr;Parent=Msa0467440-mRNA-1 |
| chr3_3 | CDS | 68731286 | 68731408 | 68731286 | ID=Msa0467440-mRNA-1:cds;Parent=Msa0467440-mRNA-1 |
| chr3_3 | CDS | 68731121 | 68731207 | 68731121 | ID=Msa0467440-mRNA-1:cds;Parent=Msa0467440-mRNA-1 |
| chr3_3 | CDS | 68730889 | 68731023 | 68730889 | ID=Msa0467440-mRNA-1:cds;Parent=Msa0467440-mRNA-1 |
| chr3_3 | CDS | 68730250 | 68730425 | 68730250 | ID=Msa0467440-mRNA-1:cds;Parent=Msa0467440-mRNA-1 |
| chr3_3 | CDS | 68729919 | 68730033 | 68729919 | ID=Msa0467440-mRNA-1:cds;Parent=Msa0467440-mRNA-1 |
| chr3_3 | CDS | 68727210 | 68727438 | 68727210 | ID=Msa0467440-mRNA-1:cds;Parent=Msa0467440-mRNA-1 |
| chr3_3 | CDS | 68726866 | 68727044 | 68726866 | ID=Msa0467440-mRNA-1:cds;Parent=Msa0467440-mRNA-1 |
| chr3_3 | CDS | 68726614 | 68726784 | 68726614 | ID=Msa0467440-mRNA-1:cds;Parent=Msa0467440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
