Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377810 | XP_003625987.2 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377810 | sp|Q6GQT9|NOMO1_MOUSE | 37.025 | 316 | 169 | 8 | 19 | 323 | 21 | 317 | 6.46e-54 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377810 | G7KTM5 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 652 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035320 | Msa1377810 | 0.852644 | 4.033140e-61 | -8.615850e-47 |
| Msa0054530 | Msa1377810 | 0.815367 | 9.586852e-52 | -8.615850e-47 |
| Msa0089980 | Msa1377810 | 0.830630 | 2.635292e-55 | -8.615850e-47 |
| Msa0090010 | Msa1377810 | 0.823039 | 1.716666e-53 | -8.615850e-47 |
| Msa0116270 | Msa1377810 | 0.849979 | 2.283968e-60 | -8.615850e-47 |
| Msa1353550 | Msa1377810 | 0.852995 | 3.200600e-61 | -8.615850e-47 |
| Msa1377810 | Msa1393820 | 0.822764 | 1.989103e-53 | -8.615850e-47 |
| Msa1377810 | Msa1401510 | 0.823385 | 1.425533e-53 | -8.615850e-47 |
| Msa1377810 | Msa1403710 | 0.812678 | 3.757257e-51 | -8.615850e-47 |
| Msa1377810 | Msa1409500 | 0.817825 | 2.696941e-52 | -8.615850e-47 |
| Msa1377810 | Msa1433730 | 0.820702 | 5.965819e-53 | -8.615850e-47 |
| Msa1377810 | Msa1443310 | 0.824830 | 6.526364e-54 | -8.615850e-47 |
| Msa1377810 | Msa1443600 | 0.835437 | 1.679024e-56 | -8.615850e-47 |
| Msa1377810 | Msa1464370 | 0.839108 | 1.929496e-57 | -8.615850e-47 |
| Msa1377810 | Msa1467000 | 0.803921 | 2.767742e-49 | -8.615850e-47 |
| Msa0626270 | Msa1377810 | 0.846567 | 2.003103e-59 | -8.615850e-47 |
| Msa0626460 | Msa1377810 | 0.823611 | 1.261705e-53 | -8.615850e-47 |
| Msa0664540 | Msa1377810 | 0.803581 | 3.255321e-49 | -8.615850e-47 |
| Msa0691340 | Msa1377810 | 0.834376 | 3.106850e-56 | -8.615850e-47 |
| Msa0749400 | Msa1377810 | 0.807226 | 5.606548e-50 | -8.615850e-47 |
| Msa0784220 | Msa1377810 | 0.807656 | 4.542913e-50 | -8.615850e-47 |
| Msa0790410 | Msa1377810 | 0.813394 | 2.616551e-51 | -8.615850e-47 |
| Msa0137540 | Msa1377810 | 0.831821 | 1.343140e-55 | -8.615850e-47 |
| Msa0138050 | Msa1377810 | 0.833655 | 4.706491e-56 | -8.615850e-47 |
| Msa0192010 | Msa1377810 | 0.816534 | 5.262054e-52 | -8.615850e-47 |
| Msa0225480 | Msa1377810 | 0.811611 | 6.420088e-51 | -8.615850e-47 |
| Msa1267040 | Msa1377810 | 0.843751 | 1.155443e-58 | -8.615850e-47 |
| Msa1267170 | Msa1377810 | 0.838158 | 3.395461e-57 | -8.615850e-47 |
| Msa1268680 | Msa1377810 | 0.809970 | 1.453953e-50 | -8.615850e-47 |
| Msa1306310 | Msa1377810 | 0.821819 | 3.295998e-53 | -8.615850e-47 |
| Msa1336030 | Msa1377810 | 0.896327 | 4.103887e-76 | -8.615850e-47 |
| Msa1342270 | Msa1377810 | 0.815673 | 8.194818e-52 | -8.615850e-47 |
| Msa0379610 | Msa1377810 | 0.814985 | 1.165439e-51 | -8.615850e-47 |
| Msa0387950 | Msa1377810 | 0.803415 | 3.524153e-49 | -8.615850e-47 |
| Msa0467310 | Msa1377810 | 0.808572 | 2.900186e-50 | -8.615850e-47 |
| Msa0467440 | Msa1377810 | 0.804140 | 2.491960e-49 | -8.615850e-47 |
| Msa1095790 | Msa1377810 | 0.814971 | 1.174094e-51 | -8.615850e-47 |
| Msa0268110 | Msa1377810 | 0.844947 | 5.512607e-59 | -8.615850e-47 |
| Msa0302890 | Msa1377810 | 0.834921 | 2.266217e-56 | -8.615850e-47 |
| Msa0307860 | Msa1377810 | 0.814485 | 1.504522e-51 | -8.615850e-47 |
| Msa0363400 | Msa1377810 | 0.812951 | 3.273569e-51 | -8.615850e-47 |
| Msa1186520 | Msa1377810 | 0.813666 | 2.280537e-51 | -8.615850e-47 |
| Msa0581580 | Msa1377810 | 0.813677 | 2.268197e-51 | -8.615850e-47 |
| Msa0586450 | Msa1377810 | 0.822018 | 2.964611e-53 | -8.615850e-47 |
| Msa0969330 | Msa1377810 | 0.808115 | 3.629419e-50 | -8.615850e-47 |
| Msa0969780 | Msa1377810 | 0.805814 | 1.113191e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377810 | MtrunA17_Chr7g0270141 | 98.762 | 323 | 4 | 0 | 1 | 323 | 1 | 323 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377810 | AT3G62360.2 | 69.811 | 318 | 94 | 1 | 8 | 323 | 11 | 328 | 3.70e-158 | 473 |
| Msa1377810 | AT3G62360.1 | 69.811 | 318 | 94 | 1 | 8 | 323 | 11 | 328 | 7.28e-158 | 473 |
Find 87 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTGTAATTAAAGTTAA+TGG | 0.170602 | tig0019985:-4583 | Msa1377810:CDS |
| AGCTAGACAGTATGGGTTTA+TGG | 0.176714 | tig0019985:+5666 | Msa1377810:intergenic |
| TGTTGATGCTTAACATTAAC+TGG | 0.181984 | tig0019985:+1580 | Msa1377810:intergenic |
| TTTGGCATCCGTTTGTTTCC+TGG | 0.227971 | tig0019985:+5238 | Msa1377810:intergenic |
| GTTATTCTTGTAGGTGGAAT+TGG | 0.243940 | tig0019985:-2648 | Msa1377810:intron |
| GCTTCTGCTGATTCCATCTA+TGG | 0.268002 | tig0019985:-5472 | Msa1377810:CDS |
| TTCCAGGGAAACCCTATATT+AGG | 0.283328 | tig0019985:-2226 | Msa1377810:intron |
| GAAACAAACGGATGCCAAAT+TGG | 0.314612 | tig0019985:-5234 | Msa1377810:CDS |
| CTCTGTAGGTTCTCTATATC+TGG | 0.316967 | tig0019985:-4170 | Msa1377810:intron |
| AATATATGGACTCCTAATAT+AGG | 0.326208 | tig0019985:+2214 | Msa1377810:intergenic |
| GACATGTGAATAATCCAATT+TGG | 0.330019 | tig0019985:+5220 | Msa1377810:intergenic |
| TGAACTAGTGCCCTACTATA+AGG | 0.331374 | tig0019985:-1641 | Msa1377810:CDS |
| CCTCTGAATACAAGAATATA+TGG | 0.332768 | tig0019985:+2200 | Msa1377810:intergenic |
| GCTAGACAGTATGGGTTTAT+GGG | 0.339699 | tig0019985:+5667 | Msa1377810:intergenic |
| GATATGAAAGTTGAAGTTAA+AGG | 0.347337 | tig0019985:-2817 | Msa1377810:CDS |
| GTGGAATTGGGCATTGGAAA+TGG | 0.349526 | tig0019985:-2635 | Msa1377810:CDS |
| TGGAATTGGGCATTGGAAAT+GGG | 0.356891 | tig0019985:-2634 | Msa1377810:CDS |
| ATCGCAGGCGAGTTCATCTT+TGG | 0.358289 | tig0019985:-5267 | Msa1377810:intron |
| CGACATTTCCGATCTGAGAT+TGG | 0.362445 | tig0019985:+5549 | Msa1377810:intergenic |
| GTTGAACTATTGTCTCCTTC+TGG | 0.372002 | tig0019985:-4080 | Msa1377810:CDS |
| CAAATCAAACCAGATCTTAG+AGG | 0.375784 | tig0019985:+5586 | Msa1377810:intergenic |
| ACATTAACTGGGACACTAGA+TGG | 0.394404 | tig0019985:+1592 | Msa1377810:intergenic |
| TCTATATCTGGTAGAGTTGT+GGG | 0.404597 | tig0019985:-4158 | Msa1377810:CDS |
| TTGTTTACAAATGTAATTCC+AGG | 0.405641 | tig0019985:-4014 | Msa1377810:intron |
| GAATCCACCGCAGCCATAGA+TGG | 0.409957 | tig0019985:+5459 | Msa1377810:intergenic |
| AAGAAATAACAAACCTTCTC+AGG | 0.410403 | tig0019985:+4538 | Msa1377810:intergenic |
| TTATTCTTGTAGGTGGAATT+GGG | 0.418787 | tig0019985:-2647 | Msa1377810:intron |
| TGTTTGCAAGGTTCTGCTAA+TGG | 0.419182 | tig0019985:-2160 | Msa1377810:CDS |
| ATATATGGACTCCTAATATA+GGG | 0.425298 | tig0019985:+2215 | Msa1377810:intergenic |
| TGGCTGCGGTGGATTCGTTC+AGG | 0.426968 | tig0019985:-5452 | Msa1377810:intron |
| CTCTATATCTGGTAGAGTTG+TGG | 0.428279 | tig0019985:-4159 | Msa1377810:CDS |
| TGGGTGAGAGCTAGACAGTA+TGG | 0.443464 | tig0019985:+5658 | Msa1377810:intergenic |
| GACATTTCCGATCTGAGATT+GGG | 0.447835 | tig0019985:+5550 | Msa1377810:intergenic |
| GAACTAGTGCCCTACTATAA+GGG | 0.463860 | tig0019985:-1640 | Msa1377810:CDS |
| TTGTATGAGCCTCTAAGATC+TGG | 0.466047 | tig0019985:-5595 | Msa1377810:five_prime_UTR |
| GGTAGAGTTGTGGGAGCTGC+AGG | 0.467417 | tig0019985:-4149 | Msa1377810:CDS |
| ATGGACCTGATGGGTGGTCA+TGG | 0.468727 | tig0019985:-4564 | Msa1377810:CDS |
| TCAGTCTTGACTTCATCATC+AGG | 0.482782 | tig0019985:-4044 | Msa1377810:CDS |
| GGAATAAAATAGTACCCGTT+AGG | 0.496115 | tig0019985:+4740 | Msa1377810:intergenic |
| GCTTCAAACCGTGGATGGAT+TGG | 0.500914 | tig0019985:-4786 | Msa1377810:CDS |
| CAGTGGGTCTGTTGTTGCAC+AGG | 0.503400 | tig0019985:-2573 | Msa1377810:intron |
| TCCATTAACTTTAATTACAA+AGG | 0.504858 | tig0019985:+4582 | Msa1377810:intergenic |
| AACCGTGGATGGATTGGTAA+AGG | 0.509918 | tig0019985:-4780 | Msa1377810:CDS |
| GAACACAATGTGCTCCTAAC+GGG | 0.513649 | tig0019985:-4754 | Msa1377810:CDS |
| GGATCCCATGACCACCCATC+AGG | 0.514368 | tig0019985:+4559 | Msa1377810:intergenic |
| GGAATTGGGCATTGGAAATG+GGG | 0.515072 | tig0019985:-2633 | Msa1377810:CDS |
| TTGTAGGTGGAATTGGGCAT+TGG | 0.524454 | tig0019985:-2641 | Msa1377810:intron |
| GTCCCTGGGTATAGTATCAG+TGG | 0.533507 | tig0019985:-2590 | Msa1377810:CDS |
| GTTCATCTTTGGTGAAGTCC+AGG | 0.533922 | tig0019985:-5256 | Msa1377810:CDS |
| GTTGAGCTTCAAACCGTGGA+TGG | 0.535663 | tig0019985:-4791 | Msa1377810:CDS |
| GGTGAAGTCCAGGAAACAAA+CGG | 0.538937 | tig0019985:-5246 | Msa1377810:CDS |
| ATCCTTTACCAATCCATCCA+CGG | 0.540905 | tig0019985:+4778 | Msa1377810:intergenic |
| ATTAAAGTTAATGGACCTGA+TGG | 0.563941 | tig0019985:-4574 | Msa1377810:CDS |
| TGGACCTGATGGGTGGTCAT+GGG | 0.566074 | tig0019985:-4563 | Msa1377810:CDS |
| TCCCTGGGTATAGTATCAGT+GGG | 0.570104 | tig0019985:-2589 | Msa1377810:CDS |
| CCATATATTCTTGTATTCAG+AGG | 0.578070 | tig0019985:-2200 | Msa1377810:CDS |
| GCTGATTCCATCTATGGCTG+CGG | 0.580408 | tig0019985:-5466 | Msa1377810:CDS |
| TTGTGAGGAATAGTAAACAT+AGG | 0.582720 | tig0019985:+5512 | Msa1377810:intergenic |
| CCTGTGGTAGTTGACAATCA+AGG | 0.585283 | tig0019985:-4336 | Msa1377810:CDS |
| GATTCCATCTATGGCTGCGG+TGG | 0.592582 | tig0019985:-5463 | Msa1377810:CDS |
| AGAACACAATGTGCTCCTAA+CGG | 0.592633 | tig0019985:-4755 | Msa1377810:CDS |
| ATTGAATGCGAACTTTCCAT+CGG | 0.594509 | tig0019985:+2096 | Msa1377810:intergenic |
| CCTTGATTGTCAACTACCAC+AGG | 0.598295 | tig0019985:+4336 | Msa1377810:intergenic |
| AGAGTTGTGGGAGCTGCAGG+CGG | 0.599360 | tig0019985:-4146 | Msa1377810:CDS |
| GTGGTCATGGGATCCTGAGA+AGG | 0.604450 | tig0019985:-4551 | Msa1377810:intron |
| GCATTCAATTCAATACCTTG+TGG | 0.608043 | tig0019985:-2082 | Msa1377810:intron |
| CACGCTGTATCAGATGCCGA+TGG | 0.609383 | tig0019985:-2112 | Msa1377810:CDS |
| CTCAGATCGGAAATGTCGAT+CGG | 0.614098 | tig0019985:-5544 | Msa1377810:exon |
| CTTATCTGTATAGGTTCCTG+TGG | 0.615542 | tig0019985:-4352 | Msa1377810:intron |
| CTGAAATTGAATAAGTTGTG+AGG | 0.620052 | tig0019985:+5497 | Msa1377810:intergenic |
| GGGTGAGAGCTAGACAGTAT+GGG | 0.622534 | tig0019985:+5659 | Msa1377810:intergenic |
| TACACTGATTCACTCCTCGT+GGG | 0.623446 | tig0019985:+5639 | Msa1377810:intergenic |
| TGAAGTTAAAGGTTCAACAC+AGG | 0.625903 | tig0019985:-2806 | Msa1377810:intron |
| TCCGAGGTAGAATGTTTGCA+AGG | 0.626426 | tig0019985:-2172 | Msa1377810:CDS |
| TTAAAGTTAATGGACCTGAT+GGG | 0.630255 | tig0019985:-4573 | Msa1377810:CDS |
| CTACACTGATTCACTCCTCG+TGG | 0.634321 | tig0019985:+5638 | Msa1377810:intergenic |
| GTTGATGCTTAACATTAACT+GGG | 0.634397 | tig0019985:+1581 | Msa1377810:intergenic |
| ACCTTGCAAACATTCTACCT+CGG | 0.635423 | tig0019985:+2171 | Msa1377810:intergenic |
| TTCATCGCCCAATCTCAGAT+CGG | 0.635686 | tig0019985:-5557 | Msa1377810:five_prime_UTR |
| ACCCACTGATACTATACCCA+GGG | 0.642433 | tig0019985:+2588 | Msa1377810:intergenic |
| GACCCACTGATACTATACCC+AGG | 0.649163 | tig0019985:+2587 | Msa1377810:intergenic |
| CAGAGAGCTACTTCTTGTCG+TGG | 0.655387 | tig0019985:+2136 | Msa1377810:intergenic |
| GTAGGTTGAGCTTCAAACCG+TGG | 0.663440 | tig0019985:-4795 | Msa1377810:intron |
| AAGTTAATGGACCTGATGGG+TGG | 0.666461 | tig0019985:-4570 | Msa1377810:CDS |
| GATGACACAAGATCGCCAGA+AGG | 0.666773 | tig0019985:+4065 | Msa1377810:intergenic |
| GTATTCAGAGGATGTGTCCG+AGG | 0.678153 | tig0019985:-2188 | Msa1377810:CDS |
| CTGTCTAGCTCTCACCCACG+AGG | 0.715692 | tig0019985:-5653 | Msa1377810:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | tig0019985:3325-3344 | Msa1377810:intron | 0.0% |
| !! | TATCATATCTAATTAATAAT+AGG | + | tig0019985:2353-2372 | Msa1377810:intergenic | 10.0% |
| !!! | GTTTATTATTTGATACTTTT+TGG | - | tig0019985:2282-2301 | Msa1377810:intron | 15.0% |
| !! | TTGGCATTTATATATATATT+AGG | - | tig0019985:2562-2581 | Msa1377810:intron | 15.0% |
| !! | ATTTATATATATATTAGGTG+TGG | - | tig0019985:2567-2586 | Msa1377810:intron | 15.0% |
| !! | AATTAGAAATACAATCATTA+GGG | - | tig0019985:3950-3969 | Msa1377810:intron | 15.0% |
| !!! | TTCATTTAACATTCTTTTTT+GGG | - | tig0019985:4832-4851 | Msa1377810:intron | 15.0% |
| !! | ATGTTGAAAAAAAAAACTAT+AGG | + | tig0019985:5242-5261 | Msa1377810:intergenic | 15.0% |
| !! | AGAATTAATTAAATACAATG+GGG | + | tig0019985:5435-5454 | Msa1377810:intergenic | 15.0% |
| !! | GAGAATTAATTAAATACAAT+GGG | + | tig0019985:5436-5455 | Msa1377810:intergenic | 15.0% |
| !! | AGAGAATTAATTAAATACAA+TGG | + | tig0019985:5437-5456 | Msa1377810:intergenic | 15.0% |
| !!! | TATTTTGATTGTTAAGCATT+CGG | - | tig0019985:1839-1858 | Msa1377810:intron | 20.0% |
| !!! | TTAATGGATTTTTCTATTGT+AGG | - | tig0019985:2407-2426 | Msa1377810:intron | 20.0% |
| !! | TCCTTTGTAATTAAAGTTAA+TGG | - | tig0019985:2637-2656 | Msa1377810:CDS | 20.0% |
| !! | TCCATTAACTTTAATTACAA+AGG | + | tig0019985:2641-2660 | Msa1377810:intergenic | 20.0% |
| !!! | ATATAAATTTTCGTTTCACA+GGG | - | tig0019985:2924-2943 | Msa1377810:intron | 20.0% |
| !! | ACAACTACTAATGTTATATT+TGG | + | tig0019985:3292-3311 | Msa1377810:intergenic | 20.0% |
| !! | ATATATATATGCATGAATCT+TGG | + | tig0019985:3315-3334 | Msa1377810:intergenic | 20.0% |
| !! | AAACTGTATAAACAATACAA+TGG | - | tig0019985:3393-3412 | Msa1377810:intron | 20.0% |
| !! | AATATTCACCTATACATAAT+AGG | + | tig0019985:3623-3642 | Msa1377810:intergenic | 20.0% |
| !! | TATTATGTATAGGTGAATAT+TGG | - | tig0019985:3622-3641 | Msa1377810:intron | 20.0% |
| !! | GAATTAGAAATACAATCATT+AGG | - | tig0019985:3949-3968 | Msa1377810:intron | 20.0% |
| !! | TTATTCTTCTTTCAAACAAA+TGG | - | tig0019985:4331-4350 | Msa1377810:CDS | 20.0% |
| !! | AAAAAGAATGTTAAATGAAG+CGG | + | tig0019985:4831-4850 | Msa1377810:intergenic | 20.0% |
| !!! | CTTCATTTAACATTCTTTTT+TGG | - | tig0019985:4831-4850 | Msa1377810:intron | 20.0% |
| !!! | TCATTTAACATTCTTTTTTG+GGG | - | tig0019985:4833-4852 | Msa1377810:intron | 20.0% |
| !! | AAAGGAAAAACCATAATAAA+AGG | + | tig0019985:4974-4993 | Msa1377810:intergenic | 20.0% |
| !! | TGAATTGAATATTATCTTTC+TGG | - | tig0019985:5463-5482 | Msa1377810:CDS | 20.0% |
| ! | GACTAATTAGTTGTTCTTAT+TGG | - | tig0019985:2054-2073 | Msa1377810:intron | 25.0% |
| ! | TATAGAAACAACTTATTCGT+AGG | - | tig0019985:2242-2261 | Msa1377810:intron | 25.0% |
| ! | TTGTGTTGAACAACATTTAA+TGG | - | tig0019985:2391-2410 | Msa1377810:intron | 25.0% |
| !! | GTGTATATATAAGCATTTTC+TGG | - | tig0019985:2533-2552 | Msa1377810:intron | 25.0% |
| !!! | GTTTGTTATTTCTTTGTCAT+TGG | - | tig0019985:2691-2710 | Msa1377810:intron | 25.0% |
| !! | TCATTGGTGAAATTTTATCA+TGG | - | tig0019985:2707-2726 | Msa1377810:intron | 25.0% |
| ! | CAGAAAAAATAATGACACAT+AGG | + | tig0019985:2782-2801 | Msa1377810:intergenic | 25.0% |
| !!! | GTCATTATTTTTTCTGAATC+TGG | - | tig0019985:2786-2805 | Msa1377810:intron | 25.0% |
| !! | GATATAAATTTTCGTTTCAC+AGG | - | tig0019985:2923-2942 | Msa1377810:intron | 25.0% |
| !! | AGTTCAACTTTTACATTTGA+AGG | + | tig0019985:3128-3147 | Msa1377810:intergenic | 25.0% |
| ! | TTGTTTACAAATGTAATTCC+AGG | - | tig0019985:3206-3225 | Msa1377810:intron | 25.0% |
| ! | TTTCGACAATACAAATGATA+TGG | - | tig0019985:3438-3457 | Msa1377810:intron | 25.0% |
| ! | TGATTAATATTACACCGTTT+AGG | - | tig0019985:3520-3539 | Msa1377810:intron | 25.0% |
| ! | ATAAAACACAAGTTTAGCAA+AGG | - | tig0019985:3589-3608 | Msa1377810:intron | 25.0% |
| ! | AATTACTTCTCAAGTTTGAA+AGG | - | tig0019985:3785-3804 | Msa1377810:intron | 25.0% |
| ! | GGTTCAAGAGAAAATATTAT+TGG | - | tig0019985:4099-4118 | Msa1377810:CDS | 25.0% |
| ! | AAAAGAGGTTTAGATGTAAA+AGG | - | tig0019985:4140-4159 | Msa1377810:CDS | 25.0% |
| !! | TGGTATATTGTCTAGAATTA+TGG | - | tig0019985:4215-4234 | Msa1377810:intron | 25.0% |
| ! | GATATGAAAGTTGAAGTTAA+AGG | - | tig0019985:4403-4422 | Msa1377810:intron | 25.0% |
| ! | AATGTATTGTGAGACTAAAT+AGG | + | tig0019985:4509-4528 | Msa1377810:intergenic | 25.0% |
| ! | TCTAATCATGTTATTCTTGT+AGG | - | tig0019985:4563-4582 | Msa1377810:CDS | 25.0% |
| ! | CAAAGAATGTGATAATATAG+TGG | + | tig0019985:4724-4743 | Msa1377810:intergenic | 25.0% |
| ! | ATTGCGTTCTAATTTAGTTA+AGG | - | tig0019985:4750-4769 | Msa1377810:CDS | 25.0% |
| ! | TTGCGTTCTAATTTAGTTAA+GGG | - | tig0019985:4751-4770 | Msa1377810:CDS | 25.0% |
| !!! | CATTTAACATTCTTTTTTGG+GGG | - | tig0019985:4834-4853 | Msa1377810:intron | 25.0% |
| !! | TGTAGTTATGCCTTTTATTA+TGG | - | tig0019985:4961-4980 | Msa1377810:intron | 25.0% |
| ! | ATATATGGACTCCTAATATA+GGG | + | tig0019985:5008-5027 | Msa1377810:intergenic | 25.0% |
| ! | AATATATGGACTCCTAATAT+AGG | + | tig0019985:5009-5028 | Msa1377810:intergenic | 25.0% |
| !! | CATCCTTTTTGTTAATTTAC+AGG | - | tig0019985:5550-5569 | Msa1377810:exon | 25.0% |
| ! | CTTCCTGTAAATTAACAAAA+AGG | + | tig0019985:5556-5575 | Msa1377810:intergenic | 25.0% |
| TTGTGAGGAATAGTAAACAT+AGG | + | tig0019985:1711-1730 | Msa1377810:intergenic | 30.0% | |
| CTGAAATTGAATAAGTTGTG+AGG | + | tig0019985:1726-1745 | Msa1377810:intergenic | 30.0% | |
| GACATGTGAATAATCCAATT+TGG | + | tig0019985:2003-2022 | Msa1377810:intergenic | 30.0% | |
| GCTTCAGAATAAAATTGCAT+AGG | + | tig0019985:2152-2171 | Msa1377810:intergenic | 30.0% | |
| !! | TAACGGGTACTATTTTATTC+CGG | - | tig0019985:2482-2501 | Msa1377810:intron | 30.0% |
| ! | AATTTTACCTTGTCGTAAAC+CGG | + | tig0019985:2504-2523 | Msa1377810:intergenic | 30.0% |
| ! | ACGACAAGGTAAAATTTTCA+TGG | - | tig0019985:2508-2527 | Msa1377810:intron | 30.0% |
| !!! | ACGCATTTATTTTTTGTCGT+AGG | - | tig0019985:2612-2631 | Msa1377810:CDS | 30.0% |
| !!! | CGCATTTATTTTTTGTCGTA+GGG | - | tig0019985:2613-2632 | Msa1377810:CDS | 30.0% |
| ! | ATTAAAGTTAATGGACCTGA+TGG | - | tig0019985:2646-2665 | Msa1377810:intron | 30.0% |
| ! | TTAAAGTTAATGGACCTGAT+GGG | - | tig0019985:2647-2666 | Msa1377810:intron | 30.0% |
| AAGAAATAACAAACCTTCTC+AGG | + | tig0019985:2685-2704 | Msa1377810:intergenic | 30.0% | |
| ! | TGGTATACTTTTGCTTAATC+TGG | - | tig0019985:2998-3017 | Msa1377810:intron | 30.0% |
| TACAGAAATTTGTACTCTGT+AGG | - | tig0019985:3036-3055 | Msa1377810:intron | 30.0% | |
| TTACAAATGTAATTCCAGGT+AGG | - | tig0019985:3210-3229 | Msa1377810:intron | 30.0% | |
| TACAAATGTAATTCCAGGTA+GGG | - | tig0019985:3211-3230 | Msa1377810:intron | 30.0% | |
| ! | GGGAAGTTTATGTTTACTTT+TGG | - | tig0019985:3231-3250 | Msa1377810:intron | 30.0% |
| GTATTGTCGAAACATGATAT+CGG | + | tig0019985:3430-3449 | Msa1377810:intergenic | 30.0% | |
| GACAATACAAATGATATGGT+TGG | - | tig0019985:3442-3461 | Msa1377810:intron | 30.0% | |
| TTAGACATATCTTGCATTTC+TGG | + | tig0019985:3496-3515 | Msa1377810:intergenic | 30.0% | |
| TGGGTAGAAAAAATCCTAAA+CGG | + | tig0019985:3537-3556 | Msa1377810:intergenic | 30.0% | |
| ! | TATACCTTGTTGTACTTCTT+AGG | + | tig0019985:3570-3589 | Msa1377810:intergenic | 30.0% |
| ACATCCAACCTATTATGTAT+AGG | - | tig0019985:3612-3631 | Msa1377810:intron | 30.0% | |
| TTCACCTATACATAATAGGT+TGG | + | tig0019985:3619-3638 | Msa1377810:intergenic | 30.0% | |
| !!! | TGTCATGTTTTTAGTATCTC+AGG | - | tig0019985:3665-3684 | Msa1377810:intron | 30.0% |
| CATGCATAACATGAAGATAT+AGG | - | tig0019985:3693-3712 | Msa1377810:intron | 30.0% | |
| TCAATACCACACAAAATTGT+GGG | + | tig0019985:3835-3854 | Msa1377810:intergenic | 30.0% | |
| TTCAATACCACACAAAATTG+TGG | + | tig0019985:3836-3855 | Msa1377810:intergenic | 30.0% | |
| !!! | GCTTTTTTATTGGCTTTTTC+CGG | + | tig0019985:3866-3885 | Msa1377810:intergenic | 30.0% |
| !!! | CACTAACTTCGCTTTTTTAT+TGG | + | tig0019985:3876-3895 | Msa1377810:intergenic | 30.0% |
| AGATAGTAGAATCTCATCTT+AGG | - | tig0019985:3988-4007 | Msa1377810:intron | 30.0% | |
| !!! | CTCATTTCTAGTGCTTTTAT+AGG | + | tig0019985:4038-4057 | Msa1377810:intergenic | 30.0% |
| AATGGACAATGTAACTCAAT+CGG | + | tig0019985:4192-4211 | Msa1377810:intergenic | 30.0% | |
| CTAGACAATATACCAAGTAA+TGG | + | tig0019985:4210-4229 | Msa1377810:intergenic | 30.0% | |
| GATTAGACAAAACATAGCAA+GGG | + | tig0019985:4550-4569 | Msa1377810:intergenic | 30.0% | |
| TGATTAGACAAAACATAGCA+AGG | + | tig0019985:4551-4570 | Msa1377810:intergenic | 30.0% | |
| AATCATGTTATTCTTGTAGG+TGG | - | tig0019985:4566-4585 | Msa1377810:CDS | 30.0% | |
| TTATTCTTGTAGGTGGAATT+GGG | - | tig0019985:4573-4592 | Msa1377810:CDS | 30.0% | |
| ! | ATGATATTTTCTTTGTCCCT+GGG | - | tig0019985:4616-4635 | Msa1377810:intron | 30.0% |
| ! | TTATGGTTTTTCCTTTTTCC+AGG | - | tig0019985:4978-4997 | Msa1377810:intron | 30.0% |
| ! | TATGGTTTTTCCTTTTTCCA+GGG | - | tig0019985:4979-4998 | Msa1377810:intron | 30.0% |
| CCTCTGAATACAAGAATATA+TGG | + | tig0019985:5023-5042 | Msa1377810:intergenic | 30.0% | |
| CCATATATTCTTGTATTCAG+AGG | - | tig0019985:5020-5039 | Msa1377810:intron | 30.0% | |
| TTCAGAATGAAATTACCACA+AGG | + | tig0019985:5156-5175 | Msa1377810:intergenic | 30.0% | |
| !! | GAATTAGTCTTCAAGATTCT+AGG | - | tig0019985:5313-5332 | Msa1377810:intron | 30.0% |
| ! | ATACTGCAATTTTTCTCTCT+TGG | - | tig0019985:5355-5374 | Msa1377810:intron | 30.0% |
| ! | GTATTTTCACCCTTATAGTA+GGG | + | tig0019985:5592-5611 | Msa1377810:intergenic | 30.0% |
| ! | TGTATTTTCACCCTTATAGT+AGG | + | tig0019985:5593-5612 | Msa1377810:intergenic | 30.0% |
| GTTGATGCTTAACATTAACT+GGG | + | tig0019985:5642-5661 | Msa1377810:intergenic | 30.0% | |
| TGTTGATGCTTAACATTAAC+TGG | + | tig0019985:5643-5662 | Msa1377810:intergenic | 30.0% | |
| CAAATCAAACCAGATCTTAG+AGG | + | tig0019985:1637-1656 | Msa1377810:intergenic | 35.0% | |
| ! | GATATTTTCGTTGTTATCGC+AGG | - | tig0019985:1938-1957 | Msa1377810:intron | 35.0% |
| !! | TATTCTGAAGCTCTTGAAGA+TGG | - | tig0019985:2161-2180 | Msa1377810:CDS | 35.0% |
| GGAATAAAATAGTACCCGTT+AGG | + | tig0019985:2483-2502 | Msa1377810:intergenic | 35.0% | |
| ! | TTTTATTCCGGTTTACGACA+AGG | - | tig0019985:2494-2513 | Msa1377810:intron | 35.0% |
| !! | AAGCATTTTCTGGTCAACTT+TGG | - | tig0019985:2543-2562 | Msa1377810:intron | 35.0% |
| ! | TTTTCTGAATCTGGACATAG+TGG | - | tig0019985:2795-2814 | Msa1377810:intron | 35.0% |
| ACAGGAACCTATACAGATAA+GGG | + | tig0019985:2869-2888 | Msa1377810:intergenic | 35.0% | |
| ! | AAATTTTCGTTTCACAGGGT+TGG | - | tig0019985:2928-2947 | Msa1377810:intron | 35.0% |
| TCTATATCTGGTAGAGTTGT+GGG | - | tig0019985:3062-3081 | Msa1377810:intron | 35.0% | |
| GAAAGCTGTCCAGTTAAAAA+TGG | - | tig0019985:3098-3117 | Msa1377810:intron | 35.0% | |
| TAAACATAAACTTCCCTACC+TGG | + | tig0019985:3227-3246 | Msa1377810:intergenic | 35.0% | |
| ! | CTCTTTCACTTGCACTATTT+TGG | - | tig0019985:3257-3276 | Msa1377810:intron | 35.0% |
| TGGAAAGTAGCTGTGTATAA+AGG | - | tig0019985:3462-3481 | Msa1377810:intron | 35.0% | |
| ! | TCATCCTAAGAAGTACAACA+AGG | - | tig0019985:3563-3582 | Msa1377810:intron | 35.0% |
| TCTATTGTATATCACACCCA+AGG | + | tig0019985:3764-3783 | Msa1377810:intergenic | 35.0% | |
| ! | CACAAAATTGTGGGTCTTAT+AGG | + | tig0019985:3826-3845 | Msa1377810:intergenic | 35.0% |
| ! | ATAAGACCCACAATTTTGTG+TGG | - | tig0019985:3826-3845 | Msa1377810:intron | 35.0% |
| TAGAGGTGGAAATGTTACAA+TGG | - | tig0019985:3899-3918 | Msa1377810:intron | 35.0% | |
| GAAATGTTACAATGGATGAG+TGG | - | tig0019985:3907-3926 | Msa1377810:intron | 35.0% | |
| ATCATTAGGGTTGACACAAT+AGG | - | tig0019985:3963-3982 | Msa1377810:intron | 35.0% | |
| AATCTCATCTTAGGTAGTCT+GGG | - | tig0019985:3997-4016 | Msa1377810:intron | 35.0% | |
| ACTAGAAATGAGTGTAGACT+AGG | - | tig0019985:4046-4065 | Msa1377810:CDS | 35.0% | |
| GAGTTACATTGTCCATTACT+TGG | - | tig0019985:4195-4214 | Msa1377810:intron | 35.0% | |
| TGAAGTTAAAGGTTCAACAC+AGG | - | tig0019985:4414-4433 | Msa1377810:intron | 35.0% | |
| ATAGGATGTAGGAAAGACAA+GGG | + | tig0019985:4491-4510 | Msa1377810:intergenic | 35.0% | |
| AATAGGATGTAGGAAAGACA+AGG | + | tig0019985:4492-4511 | Msa1377810:intergenic | 35.0% | |
| TGTGAGACTAAATAGGATGT+AGG | + | tig0019985:4502-4521 | Msa1377810:intergenic | 35.0% | |
| GTTATTCTTGTAGGTGGAAT+TGG | - | tig0019985:4572-4591 | Msa1377810:CDS | 35.0% | |
| ! | GATGATATTTTCTTTGTCCC+TGG | - | tig0019985:4615-4634 | Msa1377810:intron | 35.0% |
| ! | AGGATATTTTCGCTCTCAAT+CGG | - | tig0019985:4863-4882 | Msa1377810:intron | 35.0% |
| CTTAAACTTCCAAACTAGCA+TGG | - | tig0019985:4886-4905 | Msa1377810:intron | 35.0% | |
| AAGGCATAACTACAAGAGAA+AGG | + | tig0019985:4955-4974 | Msa1377810:intergenic | 35.0% | |
| ATTGAATGCGAACTTTCCAT+CGG | + | tig0019985:5127-5146 | Msa1377810:intergenic | 35.0% | |
| GCATTCAATTCAATACCTTG+TGG | - | tig0019985:5138-5157 | Msa1377810:intron | 35.0% | |
| TTATCTTGATTACATGCTGC+TGG | - | tig0019985:5502-5521 | Msa1377810:CDS | 35.0% | |
| AGCTCTCAATTCAAGCAAAT+AGG | + | tig0019985:5530-5549 | Msa1377810:intergenic | 35.0% | |
| !! | TTGTATGAGCCTCTAAGATC+TGG | - | tig0019985:1625-1644 | Msa1377810:CDS | 40.0% |
| ! | GACATTTCCGATCTGAGATT+GGG | + | tig0019985:1673-1692 | Msa1377810:intergenic | 40.0% |
| AATCGCAGAAGAGAAAGAGT+AGG | + | tig0019985:1817-1836 | Msa1377810:intergenic | 40.0% | |
| GAAACAAACGGATGCCAAAT+TGG | - | tig0019985:1986-2005 | Msa1377810:intron | 40.0% | |
| !! | GGTATCTTGCTGTTCATACT+CGG | - | tig0019985:2303-2322 | Msa1377810:intron | 40.0% |
| ATCCTTTACCAATCCATCCA+CGG | + | tig0019985:2445-2464 | Msa1377810:intergenic | 40.0% | |
| AGAACACAATGTGCTCCTAA+CGG | - | tig0019985:2465-2484 | Msa1377810:intron | 40.0% | |
| GCATACAGGTGTGACATAAA+AGG | + | tig0019985:2747-2766 | Msa1377810:intergenic | 40.0% | |
| GGTCATGCATAATTGCATAC+AGG | + | tig0019985:2761-2780 | Msa1377810:intergenic | 40.0% | |
| AGGAACCTATACAGATAAGG+GGG | + | tig0019985:2867-2886 | Msa1377810:intergenic | 40.0% | |
| CAGGAACCTATACAGATAAG+GGG | + | tig0019985:2868-2887 | Msa1377810:intergenic | 40.0% | |
| CACAGGAACCTATACAGATA+AGG | + | tig0019985:2870-2889 | Msa1377810:intergenic | 40.0% | |
| CTTATCTGTATAGGTTCCTG+TGG | - | tig0019985:2868-2887 | Msa1377810:intron | 40.0% | |
| CTACTTTATGTCCTACTGCA+TGG | - | tig0019985:2978-2997 | Msa1377810:intron | 40.0% | |
| ! | GCAAAAGTATACCATGCAGT+AGG | + | tig0019985:2992-3011 | Msa1377810:intergenic | 40.0% |
| CTCTGTAGGTTCTCTATATC+TGG | - | tig0019985:3050-3069 | Msa1377810:intron | 40.0% | |
| CTCTATATCTGGTAGAGTTG+TGG | - | tig0019985:3061-3080 | Msa1377810:intron | 40.0% | |
| AGCTGTCCAGTTAAAAATGG+AGG | - | tig0019985:3101-3120 | Msa1377810:intron | 40.0% | |
| !! | GAAGGACCTCCATTTTTAAC+TGG | + | tig0019985:3110-3129 | Msa1377810:intergenic | 40.0% |
| GTTGAACTATTGTCTCCTTC+TGG | - | tig0019985:3140-3159 | Msa1377810:intron | 40.0% | |
| TCAGTCTTGACTTCATCATC+AGG | - | tig0019985:3176-3195 | Msa1377810:intron | 40.0% | |
| CTTCTTAGGATGAACTGTGT+GGG | + | tig0019985:3556-3575 | Msa1377810:intergenic | 40.0% | |
| ACTTCTTAGGATGAACTGTG+TGG | + | tig0019985:3557-3576 | Msa1377810:intergenic | 40.0% | |
| ATGTCAACGTGAATCCAAGT+AGG | - | tig0019985:3719-3738 | Msa1377810:intron | 40.0% | |
| TGTCAACGTGAATCCAAGTA+GGG | - | tig0019985:3720-3739 | Msa1377810:intron | 40.0% | |
| TCCAAGTAGGGTGAATGAAA+TGG | - | tig0019985:3732-3751 | Msa1377810:intron | 40.0% | |
| TCCATTTCATTCACCCTACT+TGG | + | tig0019985:3736-3755 | Msa1377810:intergenic | 40.0% | |
| AATGAAATGGAGAACGCCTT+GGG | - | tig0019985:3745-3764 | Msa1377810:intron | 40.0% | |
| ! | TGTGGTATTGAATGTTGAGC+CGG | - | tig0019985:3844-3863 | Msa1377810:intron | 40.0% |
| AAGCGAAGTTAGTGTCATAG+AGG | - | tig0019985:3882-3901 | Msa1377810:intron | 40.0% | |
| GAATCTCATCTTAGGTAGTC+TGG | - | tig0019985:3996-4015 | Msa1377810:intron | 40.0% | |
| AGAAATGAGTGTAGACTAGG+TGG | - | tig0019985:4049-4068 | Msa1377810:CDS | 40.0% | |
| GCTTCTGTTGTGTAGTTGAT+AGG | - | tig0019985:4274-4293 | Msa1377810:intron | 40.0% | |
| ! | GCTCATATTTTCCTGCACAT+TGG | + | tig0019985:4366-4385 | Msa1377810:intergenic | 40.0% |
| ATCAACACATGGCAAAATGC+TGG | + | tig0019985:4467-4486 | Msa1377810:intergenic | 40.0% | |
| !! | AAGACAAGGGTATCAACACA+TGG | + | tig0019985:4478-4497 | Msa1377810:intergenic | 40.0% |
| !! | TGGAATTGGGCATTGGAAAT+GGG | - | tig0019985:4586-4605 | Msa1377810:CDS | 40.0% |
| TATAGGGTTTCCCTGGAAAA+AGG | + | tig0019985:4992-5011 | Msa1377810:intergenic | 40.0% | |
| TTCCAGGGAAACCCTATATT+AGG | - | tig0019985:4994-5013 | Msa1377810:intron | 40.0% | |
| ACCTTGCAAACATTCTACCT+CGG | + | tig0019985:5052-5071 | Msa1377810:intergenic | 40.0% | |
| TGTTTGCAAGGTTCTGCTAA+TGG | - | tig0019985:5060-5079 | Msa1377810:intron | 40.0% | |
| ! | TCGCTAGTCTGTTGAATTTC+TGG | - | tig0019985:5183-5202 | Msa1377810:intron | 40.0% |
| TGAACTAGTGCCCTACTATA+AGG | - | tig0019985:5579-5598 | Msa1377810:five_prime_UTR | 40.0% | |
| GAACTAGTGCCCTACTATAA+GGG | - | tig0019985:5580-5599 | Msa1377810:five_prime_UTR | 40.0% | |
| ACATTAACTGGGACACTAGA+TGG | + | tig0019985:5631-5650 | Msa1377810:intergenic | 40.0% | |
| !! | TACACTGATTCACTCCTCGT+GGG | + | tig0019985:1584-1603 | Msa1377810:intergenic | 45.0% |
| TTCATCGCCCAATCTCAGAT+CGG | - | tig0019985:1663-1682 | Msa1377810:intron | 45.0% | |
| ! | CGACATTTCCGATCTGAGAT+TGG | + | tig0019985:1674-1693 | Msa1377810:intergenic | 45.0% |
| CTCAGATCGGAAATGTCGAT+CGG | - | tig0019985:1676-1695 | Msa1377810:intron | 45.0% | |
| !! | GCTTCTGCTGATTCCATCTA+TGG | - | tig0019985:1748-1767 | Msa1377810:intron | 45.0% |
| GTTCATCTTTGGTGAAGTCC+AGG | - | tig0019985:1964-1983 | Msa1377810:intron | 45.0% | |
| GGTGAAGTCCAGGAAACAAA+CGG | - | tig0019985:1974-1993 | Msa1377810:intron | 45.0% | |
| TTTGGCATCCGTTTGTTTCC+TGG | + | tig0019985:1985-2004 | Msa1377810:intergenic | 45.0% | |
| !! | ATCTTGCTGTTCATACTCGG+AGG | - | tig0019985:2306-2325 | Msa1377810:intron | 45.0% |
| !! | AACCGTGGATGGATTGGTAA+AGG | - | tig0019985:2440-2459 | Msa1377810:intron | 45.0% |
| GAACACAATGTGCTCCTAAC+GGG | - | tig0019985:2466-2485 | Msa1377810:intron | 45.0% | |
| ! | AAGTTAATGGACCTGATGGG+TGG | - | tig0019985:2650-2669 | Msa1377810:intron | 45.0% |
| TTGTCCCCCCTTATCTGTAT+AGG | - | tig0019985:2859-2878 | Msa1377810:intron | 45.0% | |
| GGAACCTATACAGATAAGGG+GGG | + | tig0019985:2866-2885 | Msa1377810:intergenic | 45.0% | |
| CCTTGATTGTCAACTACCAC+AGG | + | tig0019985:2887-2906 | Msa1377810:intergenic | 45.0% | |
| CCTGTGGTAGTTGACAATCA+AGG | - | tig0019985:2884-2903 | Msa1377810:intron | 45.0% | |
| GAATGAAATGGAGAACGCCT+TGG | - | tig0019985:3744-3763 | Msa1377810:intron | 45.0% | |
| CGAAGTTAGTGTCATAGAGG+TGG | - | tig0019985:3885-3904 | Msa1377810:intron | 45.0% | |
| TTAGGTAGTCTGGGCATGTA+TGG | - | tig0019985:4006-4025 | Msa1377810:intron | 45.0% | |
| TAGGTAGTCTGGGCATGTAT+GGG | - | tig0019985:4007-4026 | Msa1377810:intron | 45.0% | |
| AATGAGTGTAGACTAGGTGG+AGG | - | tig0019985:4052-4071 | Msa1377810:CDS | 45.0% | |
| TTGTAGGTGGAATTGGGCAT+TGG | - | tig0019985:4579-4598 | Msa1377810:CDS | 45.0% | |
| !! | GTGGAATTGGGCATTGGAAA+TGG | - | tig0019985:4585-4604 | Msa1377810:CDS | 45.0% |
| !! | GGAATTGGGCATTGGAAATG+GGG | - | tig0019985:4587-4606 | Msa1377810:CDS | 45.0% |
| TCCCTGGGTATAGTATCAGT+GGG | - | tig0019985:4631-4650 | Msa1377810:intron | 45.0% | |
| ACCCACTGATACTATACCCA+GGG | + | tig0019985:4635-4654 | Msa1377810:intergenic | 45.0% | |
| CATGTCATGCCATGCTAGTT+TGG | + | tig0019985:4898-4917 | Msa1377810:intergenic | 45.0% | |
| CTCCTAATATAGGGTTTCCC+TGG | + | tig0019985:4999-5018 | Msa1377810:intergenic | 45.0% | |
| TCCGAGGTAGAATGTTTGCA+AGG | - | tig0019985:5048-5067 | Msa1377810:intron | 45.0% | |
| !!! | TTATTTATTTTAATTACTAT+CGG | - | tig0019985:1894-1913 | Msa1377810:intron | 5.0% |
| !! | AAATATTATATAATTAAAAG+AGG | - | tig0019985:4125-4144 | Msa1377810:CDS | 5.0% |
| GGGTGAGAGCTAGACAGTAT+GGG | + | tig0019985:1564-1583 | Msa0272690:intergenic | 50.0% | |
| TGGGTGAGAGCTAGACAGTA+TGG | + | tig0019985:1565-1584 | Msa0272690:intergenic | 50.0% | |
| !! | CTACACTGATTCACTCCTCG+TGG | + | tig0019985:1585-1604 | Msa1377810:intergenic | 50.0% |
| ! | GCTGATTCCATCTATGGCTG+CGG | - | tig0019985:1754-1773 | Msa1377810:intron | 50.0% |
| ATCGCAGGCGAGTTCATCTT+TGG | - | tig0019985:1953-1972 | Msa1377810:intron | 50.0% | |
| ! | TTGCTGTTCATACTCGGAGG+AGG | - | tig0019985:2309-2328 | Msa1377810:intron | 50.0% |
| ! | GTAGGTTGAGCTTCAAACCG+TGG | - | tig0019985:2425-2444 | Msa1377810:intron | 50.0% |
| GTTGAGCTTCAAACCGTGGA+TGG | - | tig0019985:2429-2448 | Msa1377810:intron | 50.0% | |
| GCTTCAAACCGTGGATGGAT+TGG | - | tig0019985:2434-2453 | Msa1377810:intron | 50.0% | |
| CAGATAAGGGGGGACAAAGA+AGG | + | tig0019985:2856-2875 | Msa1377810:intergenic | 50.0% | |
| GATGACACAAGATCGCCAGA+AGG | + | tig0019985:3158-3177 | Msa1377810:intergenic | 50.0% | |
| AGGTAGTCTGGGCATGTATG+GGG | - | tig0019985:4008-4027 | Msa1377810:intron | 50.0% | |
| AGTGTAGACTAGGTGGAGGA+TGG | - | tig0019985:4056-4075 | Msa1377810:CDS | 50.0% | |
| GAGGATGGTCCAGTAGTTAG+AGG | - | tig0019985:4071-4090 | Msa1377810:CDS | 50.0% | |
| TGGTCCAGTAGTTAGAGGTG+TGG | - | tig0019985:4076-4095 | Msa1377810:CDS | 50.0% | |
| ! | GGTCCAGTAGTTAGAGGTGT+GGG | - | tig0019985:4077-4096 | Msa1377810:CDS | 50.0% |
| ! | GTCCAGTAGTTAGAGGTGTG+GGG | - | tig0019985:4078-4097 | Msa1377810:CDS | 50.0% |
| AACCCCACACCTCTAACTAC+TGG | + | tig0019985:4083-4102 | Msa1377810:intergenic | 50.0% | |
| GTCCCTGGGTATAGTATCAG+TGG | - | tig0019985:4630-4649 | Msa1377810:intron | 50.0% | |
| GACCCACTGATACTATACCC+AGG | + | tig0019985:4636-4655 | Msa1377810:intergenic | 50.0% | |
| CGAGATGTCACAGACACAAG+TGG | + | tig0019985:4779-4798 | Msa1377810:intergenic | 50.0% | |
| !!! | TTCTTTTTTGGGGGCGTCAG+AGG | - | tig0019985:4843-4862 | Msa1377810:intron | 50.0% |
| GTATTCAGAGGATGTGTCCG+AGG | - | tig0019985:5032-5051 | Msa1377810:intron | 50.0% | |
| CAGAGAGCTACTTCTTGTCG+TGG | + | tig0019985:5087-5106 | Msa1377810:intergenic | 50.0% | |
| GATTCCATCTATGGCTGCGG+TGG | - | tig0019985:1757-1776 | Msa1377810:intron | 55.0% | |
| GAATCCACCGCAGCCATAGA+TGG | + | tig0019985:1764-1783 | Msa1377810:intergenic | 55.0% | |
| ! | ATGGACCTGATGGGTGGTCA+TGG | - | tig0019985:2656-2675 | Msa1377810:intron | 55.0% |
| ! | TGGACCTGATGGGTGGTCAT+GGG | - | tig0019985:2657-2676 | Msa1377810:intron | 55.0% |
| GTGGTCATGGGATCCTGAGA+AGG | - | tig0019985:2669-2688 | Msa1377810:intron | 55.0% | |
| TAGTCTGGGCATGTATGGGG+AGG | - | tig0019985:4011-4030 | Msa1377810:intron | 55.0% | |
| GGACGATACTGCCAATGTGC+AGG | - | tig0019985:4352-4371 | Msa1377810:intron | 55.0% | |
| CAGTGGGTCTGTTGTTGCAC+AGG | - | tig0019985:4647-4666 | Msa1377810:intron | 55.0% | |
| CACGCTGTATCAGATGCCGA+TGG | - | tig0019985:5108-5127 | Msa1377810:intron | 55.0% | |
| !! | CTGTCTAGCTCTCACCCACG+AGG | - | tig0019985:1567-1586 | Msa1377810:CDS | 60.0% |
| ! | TGGCTGCGGTGGATTCGTTC+AGG | - | tig0019985:1768-1787 | Msa1377810:intron | 60.0% |
| GGATCCCATGACCACCCATC+AGG | + | tig0019985:2664-2683 | Msa1377810:intergenic | 60.0% | |
| GGTAGAGTTGTGGGAGCTGC+AGG | - | tig0019985:3071-3090 | Msa1377810:intron | 60.0% | |
| AGAGTTGTGGGAGCTGCAGG+CGG | - | tig0019985:3074-3093 | Msa1377810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019985 | gene | 1555 | 5687 | 1555 | ID=Msa1377810;Name=Msa1377810 |
| tig0019985 | mRNA | 1555 | 5687 | 1555 | ID=Msa1377810-mRNA-1;Parent=Msa1377810;Name=Msa1377810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=133|1|0.9|1|1|1|10|0|323 |
| tig0019985 | exon | 1555 | 1670 | 1555 | ID=Msa1377810-mRNA-1:exon:5821;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 2083 | 2242 | 2083 | ID=Msa1377810-mRNA-1:exon:5820;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 2574 | 2657 | 2574 | ID=Msa1377810-mRNA-1:exon:5819;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 2807 | 2868 | 2807 | ID=Msa1377810-mRNA-1:exon:5818;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 4015 | 4184 | 4015 | ID=Msa1377810-mRNA-1:exon:5817;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 4297 | 4361 | 4297 | ID=Msa1377810-mRNA-1:exon:5816;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 4552 | 4608 | 4552 | ID=Msa1377810-mRNA-1:exon:5815;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 4727 | 4813 | 4727 | ID=Msa1377810-mRNA-1:exon:5814;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 5217 | 5282 | 5217 | ID=Msa1377810-mRNA-1:exon:5813;Parent=Msa1377810-mRNA-1 |
| tig0019985 | exon | 5453 | 5687 | 5453 | ID=Msa1377810-mRNA-1:exon:5812;Parent=Msa1377810-mRNA-1 |
| tig0019985 | five_prime_UTR | 5555 | 5687 | 5555 | ID=Msa1377810-mRNA-1:five_prime_utr;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 5453 | 5554 | 5453 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 5217 | 5282 | 5217 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 4727 | 4813 | 4727 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 4552 | 4608 | 4552 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 4297 | 4361 | 4297 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 4015 | 4184 | 4015 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 2807 | 2868 | 2807 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 2574 | 2657 | 2574 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 2083 | 2242 | 2083 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| tig0019985 | CDS | 1555 | 1670 | 1555 | ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
