AlfalfaGEDB | Msa1377810

M. sativa cultivar zhongmu-4 / Msa1377810

KEGG: -
GO: -
PFAM: PF17210.6

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377810	XP_003625987.2	98.762	323	4	0	1	323	1	323	0.0	652

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377810	sp\|Q6GQT9\|NOMO1_MOUSE	37.025	316	169	8	19	323	21	317	6.46e-54	193

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377810	G7KTM5	98.762	323	4	0	1	323	1	323	0.0	652

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035320	Msa1377810	0.852644	4.033140e-61	-8.615850e-47
Msa0054530	Msa1377810	0.815367	9.586852e-52	-8.615850e-47
Msa0089980	Msa1377810	0.830630	2.635292e-55	-8.615850e-47
Msa0090010	Msa1377810	0.823039	1.716666e-53	-8.615850e-47
Msa0116270	Msa1377810	0.849979	2.283968e-60	-8.615850e-47
Msa0137540	Msa1377810	0.831821	1.343140e-55	-8.615850e-47
Msa0138050	Msa1377810	0.833655	4.706491e-56	-8.615850e-47
Msa0192010	Msa1377810	0.816534	5.262054e-52	-8.615850e-47
Msa0225480	Msa1377810	0.811611	6.420088e-51	-8.615850e-47
Msa0268110	Msa1377810	0.844947	5.512607e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377810	MtrunA17_Chr7g0270141	98.762	323	4	0	1	323	1	323	0.0	652

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377810	AT3G62360.2	69.811	318	94	1	8	323	11	328	3.70e-158	473
Msa1377810	AT3G62360.1	69.811	318	94	1	8	323	11	328	7.28e-158	473

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Find 87 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGTGGATGGATTGGTAA+AGG	0.509918	tig0019985:-4780	Msa1377810:CDS
AAGAAATAACAAACCTTCTC+AGG	0.410403	tig0019985:+4538	Msa1377810:intergenic
AAGTTAATGGACCTGATGGG+TGG	0.666461	tig0019985:-4570	Msa1377810:CDS
AATATATGGACTCCTAATAT+AGG	0.326208	tig0019985:+2214	Msa1377810:intergenic
ACATTAACTGGGACACTAGA+TGG	0.394404	tig0019985:+1592	Msa1377810:intergenic
ACCCACTGATACTATACCCA+GGG	0.642433	tig0019985:+2588	Msa1377810:intergenic
ACCTTGCAAACATTCTACCT+CGG	0.635423	tig0019985:+2171	Msa1377810:intergenic
AGAACACAATGTGCTCCTAA+CGG	0.592633	tig0019985:-4755	Msa1377810:CDS
AGAGTTGTGGGAGCTGCAGG+CGG	0.599360	tig0019985:-4146	Msa1377810:CDS
AGCTAGACAGTATGGGTTTA+TGG	0.176714	tig0019985:+5666	Msa1377810:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGAGGAATAGTAAACAT+AGG	+	tig0019985:1711-1730	Msa1377810:intergenic	30.0%
CTGAAATTGAATAAGTTGTG+AGG	+	tig0019985:1726-1745	Msa1377810:intergenic	30.0%
GACATGTGAATAATCCAATT+TGG	+	tig0019985:2003-2022	Msa1377810:intergenic	30.0%
GCTTCAGAATAAAATTGCAT+AGG	+	tig0019985:2152-2171	Msa1377810:intergenic	30.0%
AAGAAATAACAAACCTTCTC+AGG	+	tig0019985:2685-2704	Msa1377810:intergenic	30.0%
TACAGAAATTTGTACTCTGT+AGG	-	tig0019985:3036-3055	Msa1377810:intron	30.0%
TTACAAATGTAATTCCAGGT+AGG	-	tig0019985:3210-3229	Msa1377810:intron	30.0%
TACAAATGTAATTCCAGGTA+GGG	-	tig0019985:3211-3230	Msa1377810:intron	30.0%
GTATTGTCGAAACATGATAT+CGG	+	tig0019985:3430-3449	Msa1377810:intergenic	30.0%
GACAATACAAATGATATGGT+TGG	-	tig0019985:3442-3461	Msa1377810:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019985	gene	1555	5687	1555	ID=Msa1377810;Name=Msa1377810
tig0019985	mRNA	1555	5687	1555	ID=Msa1377810-mRNA-1;Parent=Msa1377810;Name=Msa1377810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=133\|1\|0.9\|1\|1\|1\|10\|0\|323
tig0019985	exon	1555	1670	1555	ID=Msa1377810-mRNA-1:exon:5821;Parent=Msa1377810-mRNA-1
tig0019985	exon	2083	2242	2083	ID=Msa1377810-mRNA-1:exon:5820;Parent=Msa1377810-mRNA-1
tig0019985	exon	2574	2657	2574	ID=Msa1377810-mRNA-1:exon:5819;Parent=Msa1377810-mRNA-1
tig0019985	exon	2807	2868	2807	ID=Msa1377810-mRNA-1:exon:5818;Parent=Msa1377810-mRNA-1
tig0019985	exon	4015	4184	4015	ID=Msa1377810-mRNA-1:exon:5817;Parent=Msa1377810-mRNA-1
tig0019985	exon	4297	4361	4297	ID=Msa1377810-mRNA-1:exon:5816;Parent=Msa1377810-mRNA-1
tig0019985	exon	4552	4608	4552	ID=Msa1377810-mRNA-1:exon:5815;Parent=Msa1377810-mRNA-1
tig0019985	exon	4727	4813	4727	ID=Msa1377810-mRNA-1:exon:5814;Parent=Msa1377810-mRNA-1
tig0019985	exon	5217	5282	5217	ID=Msa1377810-mRNA-1:exon:5813;Parent=Msa1377810-mRNA-1
tig0019985	exon	5453	5687	5453	ID=Msa1377810-mRNA-1:exon:5812;Parent=Msa1377810-mRNA-1
tig0019985	five_prime_UTR	5555	5687	5555	ID=Msa1377810-mRNA-1:five_prime_utr;Parent=Msa1377810-mRNA-1
tig0019985	CDS	5453	5554	5453	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	5217	5282	5217	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	4727	4813	4727	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	4552	4608	4552	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	4297	4361	4297	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	4015	4184	4015	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	2807	2868	2807	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	2574	2657	2574	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	2083	2242	2083	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1
tig0019985	CDS	1555	1670	1555	ID=Msa1377810-mRNA-1:cds;Parent=Msa1377810-mRNA-1

Gene Sequence

>Msa1377810

ATGTCGATCGGAGATGCTTTCCTATGTTTACTATTCCTCACAACTTATTCAATTTCAGTTGCTTCTGCTGATTCCATCTATGGCTGCGGTGGATTCGTTCAGGCGAGTTCATCTTTGGTGAAGTCCAGGAAACAAACGGATGCCAAATTGGATTATTCACATGTCACTGTTGAGCTTCAAACCGTGGATGGATTGGTAAAGGATAGAACACAATGTGCTCCTAACGGGTACTATTTTATTCCGGTTTACGACAAGGGATCCTTTGTAATTAAAGTTAATGGACCTGATGGGTGGTCATGGGATCCTGAGAAGGTTCCTGTGGTAGTTGACAATCAAGGTTGCAACAACAATGAAGATATAAATTTTCGTTTCACAGGGTTCTCTATATCTGGTAGAGTTGTGGGAGCTGCAGGCGGAGAAAGCTGTCCAGTTAAAAATGGAGGTCCTTCAAATGTAAAAGTTGAACTATTGTCTCCTTCTGGCGATCTTGTGTCATCAGTCTTGACTTCATCATCAGGAAGCTACTTGTTTACAAATGTAATTCCAGGAAAATATGAGCTACGAGCTTCAAATCGTGATATGAAAGTTGAAGTTAAAGGTTCAACACAGGTGGAATTGGGCATTGGAAATGGGGTGATTGATGATATTTTCTTTGTCCCTGGGTATAGTATCAGTGGGTCTGTTGTTGCACAGGGAAACCCTATATTAGGAGTCCATATATTCTTGTATTCAGAGGATGTGTCCGAGGTAGAATGTTTGCAAGGTTCTGCTAATGGTCCACGACAAGAAGTAGCTCTCTGTCACGCTGTATCAGATGCCGATGGAAAGTTCGCATTCAATTCAATACCTTGTGGAAGTTATGAACTAGTGCCCTACTATAAGGGTGAAAATACAGTATTTGATGTTTCACCATCTAGTGTCCCAGTTAATGTTAAGCATCAACATGTAACAGTGCCTCAAAAATTCCAG

Protein sequence

>Msa1377810

MSIGDAFLCLLFLTTYSISVASADSIYGCGGFVQASSSLVKSRKQTDAKLDYSHVTVELQTVDGLVKDRTQCAPNGYYFIPVYDKGSFVIKVNGPDGWSWDPEKVPVVVDNQGCNNNEDINFRFTGFSISGRVVGAAGGESCPVKNGGPSNVKVELLSPSGDLVSSVLTSSSGSYLFTNVIPGKYELRASNRDMKVEVKGSTQVELGIGNGVIDDIFFVPGYSISGSVVAQGNPILGVHIFLYSEDVSEVECLQGSANGPRQEVALCHAVSDADGKFAFNSIPCGSYELVPYYKGENTVFDVSPSSVPVNVKHQHVTVPQKFQ