AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467830 MtrunA17_Chr3g0122531 90.244 205 12 2 5 207 19 217 3.34e-128 366
Msa0467830 MtrunA17_Chr3g0122501 91.748 206 15 1 4 207 5 210 2.88e-123 353
Msa0467830 MtrunA17_Chr8g0377351 63.158 209 74 2 1 207 7 214 3.40e-91 272
Msa0467830 MtrunA17_Chr3g0122521 88.889 135 15 0 219 353 75 209 8.14e-73 224
Msa0467830 MtrunA17_Chr3g0122541 93.077 130 9 0 224 353 341 470 7.04e-72 231
Msa0467830 MtrunA17_Chr5g0419741 68.103 116 37 0 224 339 188 303 1.13e-50 171
Msa0467830 MtrunA17_Chr2g0303951 62.617 107 40 0 224 330 359 465 6.74e-40 146
Msa0467830 MtrunA17_Chr3g0078241 34.909 275 144 8 76 331 207 465 1.88e-39 145
Msa0467830 MtrunA17_Chr2g0282081 38.144 194 115 1 10 203 23 211 6.58e-36 129
Msa0467830 MtrunA17_Chr2g0284551 36.842 95 59 1 229 323 176 269 3.73e-12 66.2
Msa0467830 MtrunA17_Chr5g0437111 36.697 109 65 4 229 334 184 291 3.75e-12 66.2
Msa0467830 MtrunA17_Chr3g0113611 34.579 107 66 4 229 332 158 263 2.99e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467830 AT1G67360.1 50.237 211 100 2 3 208 1 211 4.13e-67 211
Msa0467830 AT1G67360.2 50.237 211 100 2 3 208 1 211 4.13e-67 211
Msa0467830 AT5G11860.3 76.068 117 28 0 224 340 174 290 3.92e-60 196
Msa0467830 AT5G11860.5 76.068 117 28 0 224 340 174 290 3.92e-60 196
Msa0467830 AT5G11860.1 76.068 117 28 0 224 340 174 290 3.92e-60 196
Msa0467830 AT5G11860.4 76.068 117 28 0 224 340 174 290 3.92e-60 196
Msa0467830 AT5G11860.2 76.068 117 28 0 224 340 174 290 3.92e-60 196
Msa0467830 AT4G18140.3 55.046 109 49 0 224 332 331 439 2.10e-34 131
Msa0467830 AT5G46410.3 55.140 107 48 0 224 330 343 449 4.32e-34 130
Msa0467830 AT5G46410.1 55.140 107 48 0 224 330 343 449 4.32e-34 130
Msa0467830 AT5G46410.2 55.140 107 48 0 224 330 346 452 4.40e-34 130
Msa0467830 AT4G18140.4 55.140 107 48 0 224 330 331 437 6.01e-34 130
Msa0467830 AT4G18140.6 55.140 107 48 0 224 330 331 437 6.01e-34 130
Msa0467830 AT4G18140.5 55.140 107 48 0 224 330 331 437 6.01e-34 130
Msa0467830 AT4G18140.1 55.140 107 48 0 224 330 331 437 7.49e-34 130
Msa0467830 AT4G18140.2 55.140 107 48 0 224 330 331 437 7.49e-34 130
Msa0467830 AT2G47780.1 35.577 208 119 3 6 208 35 232 3.48e-33 123
Msa0467830 AT3G05500.1 34.247 219 127 1 9 210 19 237 7.62e-32 120
Msa0467830 AT1G29780.1 40.000 100 58 2 229 327 118 216 6.51e-19 84.7
Msa0467830 AT1G29770.1 35.644 101 63 2 229 328 172 271 4.97e-16 77.8
Msa0467830 AT5G45700.1 35.417 96 61 1 229 323 166 261 4.36e-13 68.9
Msa0467830 AT3G05500.2 35.294 102 66 0 109 210 64 165 2.80e-11 62.0

Find 86 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAACCTTTGAGCAATTT+TGG 0.105720 3_3:-69260901 None:intergenic
ATTGATTAGTAGCAAATTCT+TGG 0.246140 3_3:-69259107 None:intergenic
GATCAAGCACATTTAGGATT+TGG 0.275102 3_3:-69260351 None:intergenic
GCTTTGGATCAAGCACATTT+AGG 0.280222 3_3:-69260357 None:intergenic
ACTTCCTTTCTTGGAGAGTT+TGG 0.310042 3_3:+69260857 Msa0467830:CDS
TTTCTTTGTTCCCAGGCATT+TGG 0.330318 3_3:+69260762 Msa0467830:intron
TCCTATTGATGATATATCTA+AGG 0.343390 3_3:+69259288 Msa0467830:CDS
CCCTCCTATCACTCTTGTCC+TGG 0.380616 3_3:+69259584 Msa0467830:CDS
CTCAAAGATTTAACAGTGCT+TGG 0.383595 3_3:+69260439 Msa0467830:CDS
TATCACTCTTGTCCTGGACT+TGG 0.387490 3_3:+69259590 Msa0467830:CDS
GTTTGGCGATCCTTCGGATA+AGG 0.401059 3_3:+69260821 Msa0467830:CDS
ATACCAATTGAGAGTTGGTT+TGG 0.405207 3_3:+69260804 Msa0467830:CDS
CAAGCACTGTTAAATCTTTG+AGG 0.418325 3_3:-69260438 None:intergenic
TTGGTATTCCATTGTCCACT+TGG 0.427728 3_3:-69260788 None:intergenic
TCCCTTTCATTTGTATTCAA+AGG 0.429876 3_3:-69260954 None:intergenic
GTTGTGAGTGTGGGTCGATC+TGG 0.430488 3_3:+69259046 Msa0467830:CDS
TGGCGAAATATCTTCCGCTT+TGG 0.430722 3_3:-69260373 None:intergenic
AAGTCCAGGACAAGAGTGAT+AGG 0.453182 3_3:-69259588 None:intergenic
CAGCCATGTCCTTGATTGCA+TGG 0.458745 3_3:-69259228 None:intergenic
TCCTTTGAATACAAATGAAA+GGG 0.459452 3_3:+69260953 Msa0467830:CDS
CCACTTTAACACAAGATTCA+CGG 0.462350 3_3:-69260405 None:intergenic
TGGTAGGAGTTGATGATGTC+CGG 0.464075 3_3:+69260877 Msa0467830:CDS
TCCTTGAATTTGTTGTAGAC+AGG 0.471348 3_3:-69258427 None:intergenic
CCTTTCTTGGAGAGTTTGGT+AGG 0.474214 3_3:+69260861 Msa0467830:CDS
TCGCCAAACCAACTCTCAAT+TGG 0.477108 3_3:-69260807 None:intergenic
TGCTCAAAGGTTCAAGCTAC+GGG 0.477113 3_3:+69260908 Msa0467830:CDS
TATATCTAAGGCATTTAAGC+AGG 0.484736 3_3:+69259300 Msa0467830:CDS
GAGTTGGTTTGGCGATCCTT+CGG 0.487954 3_3:+69260815 Msa0467830:CDS
ATCTCTGCTGCTGCATGGAA+TGG 0.488934 3_3:-69259166 None:intergenic
GAAATACAACCATGCAATCA+AGG 0.490860 3_3:+69259219 Msa0467830:CDS
AGGACCAACAACAGTGGTTA+CGG 0.492724 3_3:-69258407 None:intergenic
GCCTTAGATATATCATCAAT+AGG 0.493546 3_3:-69259289 None:intergenic
AGCATGTTCACTGAACTTGT+AGG 0.502063 3_3:-69258951 None:intergenic
CATGCAATCAAGGACATGGC+TGG 0.504278 3_3:+69259229 Msa0467830:CDS
CCTACCAAACTCTCCAAGAA+AGG 0.506914 3_3:-69260861 None:intergenic
AATCAAGGACATGGCTGGAA+AGG 0.507647 3_3:+69259234 Msa0467830:CDS
CAGAAAGTAACACATGAGGC+AGG 0.511557 3_3:+69259019 Msa0467830:CDS
ATCAAGGACATGGCTGGAAA+GGG 0.511952 3_3:+69259235 Msa0467830:CDS
TTGCTCAAAGGTTCAAGCTA+CGG 0.512629 3_3:+69260907 Msa0467830:CDS
TCATATTGCTAAGCAGCTTA+CGG 0.513322 3_3:+69258976 Msa0467830:CDS
ATCCTTTGAATACAAATGAA+AGG 0.514181 3_3:+69260952 Msa0467830:CDS
CCGTGAATCTTGTGTTAAAG+TGG 0.514633 3_3:+69260405 Msa0467830:CDS
ACATAATCTACAGCTGCTCT+TGG 0.528267 3_3:-69259073 None:intergenic
ATGGAATACCAATTGAGAGT+TGG 0.534020 3_3:+69260799 Msa0467830:CDS
TCCTGTCTACAACAAATTCA+AGG 0.534846 3_3:+69258426 Msa0467830:CDS
AATTCAGTGAAGCTTTGGAC+TGG 0.540139 3_3:+69259127 Msa0467830:intron
ACAAAGAACTAAAGCGCCTA+GGG 0.542993 3_3:+69258275 Msa0467830:CDS
TTGTCATCTCTGCTGCTGCA+TGG 0.553458 3_3:-69259171 None:intergenic
CAATTTCAACTACTGCTCAC+TGG 0.556297 3_3:+69259191 Msa0467830:CDS
AGGTCCCGAGTTCTTCTTAG+CGG 0.562081 3_3:-69258353 None:intergenic
ATATCATCAATAGGAATCAA+AGG 0.564224 3_3:-69259280 None:intergenic
GGAACCGTAACCACTGTTGT+TGG 0.570651 3_3:+69258403 Msa0467830:CDS
CTTTCTTACCATCCAAGTCC+AGG 0.574956 3_3:-69259602 None:intergenic
TTTGTTACAAGTCATGGACT+CGG 0.578462 3_3:+69259556 Msa0467830:intron
TCCAGGACAAGAGTGATAGG+AGG 0.580157 3_3:-69259585 None:intergenic
TTTGGATTCCAAGTGGACAA+TGG 0.581978 3_3:+69260780 Msa0467830:CDS
CCAGGACAAGAGTGATAGGA+GGG 0.585291 3_3:-69259584 None:intergenic
TCTGCTGCTGCATGGAATGG+TGG 0.585574 3_3:-69259163 None:intergenic
ACTCTTGTCCTGGACTTGGA+TGG 0.585954 3_3:+69259594 Msa0467830:CDS
GAATCTTGTGTTAAAGTGGA+GGG 0.587224 3_3:+69260409 Msa0467830:CDS
TGAATCCGCTAAGAAGAACT+CGG 0.596229 3_3:+69258348 Msa0467830:CDS
ATCCGTTGTTGAAACAGTGG+AGG 0.602405 3_3:+69258381 Msa0467830:CDS
AACAAAGAACTAAAGCGCCT+AGG 0.602547 3_3:+69258274 Msa0467830:CDS
CCAGGCATTTGGATTCCAAG+TGG 0.605438 3_3:+69260773 Msa0467830:intron
TGAATCTTGTGTTAAAGTGG+AGG 0.609583 3_3:+69260408 Msa0467830:CDS
GAGATCCGTTGTTGAAACAG+TGG 0.610779 3_3:+69258378 Msa0467830:CDS
AAAAGCAATTCCTTATCCGA+AGG 0.614883 3_3:-69260831 None:intergenic
TCCCTCCACTGTTTCAACAA+CGG 0.614886 3_3:-69258383 None:intergenic
AAGATTCACGGAATGTGTGA+TGG 0.615589 3_3:-69260393 None:intergenic
TGATAATTGACAACTCCCCA+CGG 0.617294 3_3:+69260482 Msa0467830:CDS
TCCGGCCCAAAATTGCTCAA+AGG 0.619247 3_3:+69260895 Msa0467830:CDS
GATAATTGACAACTCCCCAC+GGG 0.621765 3_3:+69260483 Msa0467830:CDS
CAACCATGCAATCAAGGACA+TGG 0.623592 3_3:+69259225 Msa0467830:CDS
GTTTCAACAACGGATCTCAA+AGG 0.628787 3_3:-69258373 None:intergenic
AATCTTGTGTTAAAGTGGAG+GGG 0.628996 3_3:+69260410 Msa0467830:CDS
AGAAAGTAACACATGAGGCA+GGG 0.635157 3_3:+69259020 Msa0467830:CDS
GAATCCGCTAAGAAGAACTC+GGG 0.636221 3_3:+69258349 Msa0467830:CDS
GCAGGGAAAGTTGTGAGTGT+GGG 0.643467 3_3:+69259037 Msa0467830:CDS
GTGAGTGTGGGTCGATCTGG+AGG 0.644447 3_3:+69259049 Msa0467830:CDS
ATATCTAAGGCATTTAAGCA+GGG 0.645465 3_3:+69259301 Msa0467830:CDS
GGCAGGGAAAGTTGTGAGTG+TGG 0.661719 3_3:+69259036 Msa0467830:CDS
TCCGTTGTTGAAACAGTGGA+GGG 0.667313 3_3:+69258382 Msa0467830:CDS
TAAATGTGCTTGATCCAAAG+CGG 0.675009 3_3:+69260359 Msa0467830:CDS
GATTCAGAAAGTAACACATG+AGG 0.698122 3_3:+69259015 Msa0467830:CDS
GTAGACAGGACCAACAACAG+TGG 0.729488 3_3:-69258413 None:intergenic
ATACTACAAACATACCCGTG+GGG 0.781121 3_3:-69260497 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAATTATACAAAC+AGG - chr3_3:69259893-69259912 None:intergenic 10.0%
!!! CATGTTTTATTTTTTTTAAG+TGG + chr3_3:69259846-69259865 Msa0467830:intron 15.0%
!!! TATTTTTTTTAAGTGGTAAA+TGG + chr3_3:69259853-69259872 Msa0467830:intron 15.0%
!! ATTATTAATCTGAAAGCAAA+GGG - chr3_3:69258502-69258521 None:intergenic 20.0%
!! AATTATTAATCTGAAAGCAA+AGG - chr3_3:69258503-69258522 None:intergenic 20.0%
!! AAAAACATACAAATAAAGCA+CGG - chr3_3:69258536-69258555 None:intergenic 20.0%
!! TTAAAACTTCATCAAAATCA+AGG - chr3_3:69258717-69258736 None:intergenic 20.0%
!! TTCATTAATTTATTAAGCTG+TGG + chr3_3:69258882-69258901 Msa0467830:intron 20.0%
!! TATGTAAATTTGCGATAAAA+TGG + chr3_3:69259511-69259530 Msa0467830:intron 20.0%
!! CTAATTAGCAACTTAAAATT+GGG - chr3_3:69259634-69259653 None:intergenic 20.0%
!! TCTAATTAGCAACTTAAAAT+TGG - chr3_3:69259635-69259654 None:intergenic 20.0%
!! ACAAGATCACTTTAATTAAA+TGG - chr3_3:69259781-69259800 None:intergenic 20.0%
!!! TCATTTTTATGCTTTGTTTT+GGG + chr3_3:69259968-69259987 Msa0467830:intron 20.0%
!!! GTTTGTAGTATTATATGTTT+TGG + chr3_3:69260509-69260528 Msa0467830:intron 20.0%
!!! AAGATACCAAATGATTATTT+TGG - chr3_3:69260620-69260639 None:intergenic 20.0%
! ATCAAGCAATGTAAGTATTA+TGG - chr3_3:69258036-69258055 None:intergenic 25.0%
! TATATGAAACAGCAATAACT+TGG - chr3_3:69258075-69258094 None:intergenic 25.0%
! TTGAAGTTTGTAATTTCTGA+AGG + chr3_3:69258240-69258259 Msa0467830:intron 25.0%
!!! TATGTTTTTGTAAACCTTTC+TGG + chr3_3:69258547-69258566 Msa0467830:intron 25.0%
! TTAGACTGATAAAGCAAAAT+TGG + chr3_3:69258589-69258608 Msa0467830:intron 25.0%
! TAGACTGATAAAGCAAAATT+GGG + chr3_3:69258590-69258609 Msa0467830:intron 25.0%
! TGATGATTTCCTTAGAAAAT+AGG + chr3_3:69258792-69258811 Msa0467830:intron 25.0%
!! TTTGTTCTTCCTATTTTCTA+AGG - chr3_3:69258804-69258823 None:intergenic 25.0%
! ATTGATTAGTAGCAAATTCT+TGG - chr3_3:69259110-69259129 None:intergenic 25.0%
! ATATCATCAATAGGAATCAA+AGG - chr3_3:69259283-69259302 None:intergenic 25.0%
!! TCCTATTGATGATATATCTA+AGG + chr3_3:69259288-69259307 Msa0467830:CDS 25.0%
!!! TATCACTATTTCTAGATACT+TGG - chr3_3:69259486-69259505 None:intergenic 25.0%
!!! CTCATTTTTATGCTTTGTTT+TGG + chr3_3:69259967-69259986 Msa0467830:intron 25.0%
!!! CATTTTTATGCTTTGTTTTG+GGG + chr3_3:69259969-69259988 Msa0467830:intron 25.0%
! AGAGAAAAATACCAAAACAA+GGG - chr3_3:69260159-69260178 None:intergenic 25.0%
!!! AAATGATTATTTTGGTGTAG+GGG - chr3_3:69260612-69260631 None:intergenic 25.0%
!!! CAAATGATTATTTTGGTGTA+GGG - chr3_3:69260613-69260632 None:intergenic 25.0%
! ATCCTTTGAATACAAATGAA+AGG + chr3_3:69260952-69260971 Msa0467830:CDS 25.0%
! TCCTTTGAATACAAATGAAA+GGG + chr3_3:69260953-69260972 Msa0467830:CDS 25.0%
ATACTCTGTTAGATCACAAA+TGG + chr3_3:69258002-69258021 Msa0467830:intron 30.0%
!! ATTGATTAGTCTGTTTGTGA+TGG - chr3_3:69258134-69258153 None:intergenic 30.0%
ATCACAAACAGACTAATCAA+TGG + chr3_3:69258133-69258152 Msa0467830:intron 30.0%
ATCAGTCTAAATTAGATCCA+TGG - chr3_3:69258579-69258598 None:intergenic 30.0%
! CATGATCATGTTTGAAATCA+AGG + chr3_3:69258658-69258677 Msa0467830:intron 30.0%
AGGTGAGTTTGATAAAATCA+CGG + chr3_3:69258678-69258697 Msa0467830:intron 30.0%
ACAAGACGTATGTTGTATTT+GGG + chr3_3:69258768-69258787 Msa0467830:intron 30.0%
TAATCAATTCAGTGAAGCTT+TGG + chr3_3:69259122-69259141 Msa0467830:intron 30.0%
!!! GAAAGGGTTATAGTTTTGTT+GGG + chr3_3:69259251-69259270 Msa0467830:CDS 30.0%
GCCTTAGATATATCATCAAT+AGG - chr3_3:69259292-69259311 None:intergenic 30.0%
! TATATCTAAGGCATTTAAGC+AGG + chr3_3:69259300-69259319 Msa0467830:CDS 30.0%
! ATATCTAAGGCATTTAAGCA+GGG + chr3_3:69259301-69259320 Msa0467830:CDS 30.0%
! TTTTCTGTGATGAGACAATT+TGG + chr3_3:69259406-69259425 Msa0467830:intron 30.0%
TTTCTGTGATGAGACAATTT+GGG + chr3_3:69259407-69259426 Msa0467830:intron 30.0%
AAACATTCATAGCAACAACT+TGG - chr3_3:69259433-69259452 None:intergenic 30.0%
!!! GTGTTTTTTGTTACAAGTCA+TGG + chr3_3:69259550-69259569 Msa0467830:intron 30.0%
! GCTTTAATTTCAACTCACAA+TGG + chr3_3:69259656-69259675 Msa0467830:intron 30.0%
TTCACAACCAAAAAGTTACA+AGG - chr3_3:69259701-69259720 None:intergenic 30.0%
! AGCAAGCATTTTCAAATAGT+TGG - chr3_3:69259817-69259836 None:intergenic 30.0%
ATTAAATCTGGGTCATACAA+AGG - chr3_3:69260105-69260124 None:intergenic 30.0%
GAGAGAAAAATACCAAAACA+AGG - chr3_3:69260160-69260179 None:intergenic 30.0%
! CACTGTGAATTTTAAATCTG+AGG + chr3_3:69260219-69260238 Msa0467830:intron 30.0%
!!! CCAAATGATTATTTTGGTGT+AGG - chr3_3:69260614-69260633 None:intergenic 30.0%
CCTACACCAAAATAATCATT+TGG + chr3_3:69260611-69260630 Msa0467830:intron 30.0%
!!! TGTTATTTTTCTTTGTTCCC+AGG + chr3_3:69260755-69260774 Msa0467830:intron 30.0%
! GCTTTTATTACTTCCTTTCT+TGG + chr3_3:69260848-69260867 Msa0467830:CDS 30.0%
! TTGAACCTTTGAGCAATTTT+GGG - chr3_3:69260903-69260922 None:intergenic 30.0%
TCCCTTTCATTTGTATTCAA+AGG - chr3_3:69260957-69260976 None:intergenic 30.0%
ATTTGAATCTGCTCAGTGAA+GGG + chr3_3:69257914-69257933 Msa0467830:intron 35.0%
!!! GATGGAACTTGTTTTGTAAG+AGG - chr3_3:69258116-69258135 None:intergenic 35.0%
AACTATGCTAACAACCTTGT+TGG - chr3_3:69258162-69258181 None:intergenic 35.0%
TCCTGTCTACAACAAATTCA+AGG + chr3_3:69258426-69258445 Msa0467830:CDS 35.0%
!! TCCTTGAATTTGTTGTAGAC+AGG - chr3_3:69258430-69258449 None:intergenic 35.0%
! CCTTGTTGTCAACAAAAACA+AGG - chr3_3:69258468-69258487 None:intergenic 35.0%
!!! CCTTGTTTTTGTTGACAACA+AGG + chr3_3:69258465-69258484 Msa0467830:CDS 35.0%
!!! AACCTTTCTGGTTTTTACCA+TGG + chr3_3:69258559-69258578 Msa0467830:intron 35.0%
ATCCATGGTAAAAACCAGAA+AGG - chr3_3:69258564-69258583 None:intergenic 35.0%
CACAAGACGTATGTTGTATT+TGG + chr3_3:69258767-69258786 Msa0467830:intron 35.0%
CAAGACGTATGTTGTATTTG+GGG + chr3_3:69258769-69258788 Msa0467830:intron 35.0%
GACTAGCATATGATTTGAGT+AGG + chr3_3:69258916-69258935 Msa0467830:intron 35.0%
TAGCATATGATTTGAGTAGG+TGG + chr3_3:69258919-69258938 Msa0467830:intron 35.0%
TCATATTGCTAAGCAGCTTA+CGG + chr3_3:69258976-69258995 Msa0467830:CDS 35.0%
GATTCAGAAAGTAACACATG+AGG + chr3_3:69259015-69259034 Msa0467830:CDS 35.0%
GAAATACAACCATGCAATCA+AGG + chr3_3:69259219-69259238 Msa0467830:CDS 35.0%
!!! GGAAAGGGTTATAGTTTTGT+TGG + chr3_3:69259250-69259269 Msa0467830:CDS 35.0%
ATTTAAGCAGGGAGAAGTTA+AGG + chr3_3:69259312-69259331 Msa0467830:intron 35.0%
TTTGTTACAAGTCATGGACT+CGG + chr3_3:69259556-69259575 Msa0467830:intron 35.0%
! TATGCAGAAAGGTGGTTTTT+AGG - chr3_3:69259748-69259767 None:intergenic 35.0%
TAAAAACCACCTTTCTGCAT+AGG + chr3_3:69259747-69259766 Msa0467830:intron 35.0%
AAAATGAGCAGTTCAACCAA+AGG - chr3_3:69259955-69259974 None:intergenic 35.0%
ACAACACATACAACACATCT+GGG + chr3_3:69260064-69260083 Msa0467830:intron 35.0%
GTCACTGTGACATTAAATCT+GGG - chr3_3:69260116-69260135 None:intergenic 35.0%
TGTCACTGTGACATTAAATC+TGG - chr3_3:69260117-69260136 None:intergenic 35.0%
CCAAAACAAGGGAAATACTT+GGG - chr3_3:69260148-69260167 None:intergenic 35.0%
ACCAAAACAAGGGAAATACT+TGG - chr3_3:69260149-69260168 None:intergenic 35.0%
! TTTGGTATTTTTCTCTCTGC+AGG + chr3_3:69260163-69260182 Msa0467830:intron 35.0%
CACAGTGAAAGTAAAGTCTA+GGG - chr3_3:69260206-69260225 None:intergenic 35.0%
TCACAGTGAAAGTAAAGTCT+AGG - chr3_3:69260207-69260226 None:intergenic 35.0%
!! TCAAGGAATTCTTTTAGGTG+AGG - chr3_3:69260271-69260290 None:intergenic 35.0%
! CTCTCTCAAGGAATTCTTTT+AGG - chr3_3:69260276-69260295 None:intergenic 35.0%
! GATCAAGCACATTTAGGATT+TGG - chr3_3:69260354-69260373 None:intergenic 35.0%
TAAATGTGCTTGATCCAAAG+CGG + chr3_3:69260359-69260378 Msa0467830:CDS 35.0%
CCACTTTAACACAAGATTCA+CGG - chr3_3:69260408-69260427 None:intergenic 35.0%
TGAATCTTGTGTTAAAGTGG+AGG + chr3_3:69260408-69260427 Msa0467830:CDS 35.0%
GAATCTTGTGTTAAAGTGGA+GGG + chr3_3:69260409-69260428 Msa0467830:CDS 35.0%
AATCTTGTGTTAAAGTGGAG+GGG + chr3_3:69260410-69260429 Msa0467830:CDS 35.0%
! CAAGCACTGTTAAATCTTTG+AGG - chr3_3:69260441-69260460 None:intergenic 35.0%
CTCAAAGATTTAACAGTGCT+TGG + chr3_3:69260439-69260458 Msa0467830:CDS 35.0%
AATACTACAAACATACCCGT+GGG - chr3_3:69260501-69260520 None:intergenic 35.0%
TAATACTACAAACATACCCG+TGG - chr3_3:69260502-69260521 None:intergenic 35.0%
GGTTCCAAATGCAACTATAA+GGG - chr3_3:69260584-69260603 None:intergenic 35.0%
AGGTTCCAAATGCAACTATA+AGG - chr3_3:69260585-69260604 None:intergenic 35.0%
GTTTAGAGAGTAAACAGTTC+AGG - chr3_3:69260661-69260680 None:intergenic 35.0%
ATGGAATACCAATTGAGAGT+TGG + chr3_3:69260799-69260818 Msa0467830:CDS 35.0%
! ATACCAATTGAGAGTTGGTT+TGG + chr3_3:69260804-69260823 Msa0467830:CDS 35.0%
AAAAGCAATTCCTTATCCGA+AGG - chr3_3:69260834-69260853 None:intergenic 35.0%
! CTTGAACCTTTGAGCAATTT+TGG - chr3_3:69260904-69260923 None:intergenic 35.0%
CATTTGAATCTGCTCAGTGA+AGG + chr3_3:69257913-69257932 Msa0467830:intron 40.0%
TTTGAATCTGCTCAGTGAAG+GGG + chr3_3:69257915-69257934 Msa0467830:intron 40.0%
TTGGGTCAACATCAGATCAT+TGG + chr3_3:69257943-69257962 Msa0467830:intron 40.0%
TATGCTAACAACCTTGTTGG+TGG - chr3_3:69258159-69258178 None:intergenic 40.0%
! AACAAAGAACTAAAGCGCCT+AGG + chr3_3:69258274-69258293 Msa0467830:CDS 40.0%
! ACAAAGAACTAAAGCGCCTA+GGG + chr3_3:69258275-69258294 Msa0467830:CDS 40.0%
TGAATCCGCTAAGAAGAACT+CGG + chr3_3:69258348-69258367 Msa0467830:CDS 40.0%
GTTTCAACAACGGATCTCAA+AGG - chr3_3:69258376-69258395 None:intergenic 40.0%
CAAAAACAAGGACATCGTCA+GGG - chr3_3:69258456-69258475 None:intergenic 40.0%
ACAAAAACAAGGACATCGTC+AGG - chr3_3:69258457-69258476 None:intergenic 40.0%
AGCATGTTCACTGAACTTGT+AGG - chr3_3:69258954-69258973 None:intergenic 40.0%
AGAAAGTAACACATGAGGCA+GGG + chr3_3:69259020-69259039 Msa0467830:CDS 40.0%
ACATAATCTACAGCTGCTCT+TGG - chr3_3:69259076-69259095 None:intergenic 40.0%
!! AATTCAGTGAAGCTTTGGAC+TGG + chr3_3:69259127-69259146 Msa0467830:intron 40.0%
CAATTTCAACTACTGCTCAC+TGG + chr3_3:69259191-69259210 Msa0467830:CDS 40.0%
! GAAGCTGCCTTGTAACTTTT+TGG + chr3_3:69259691-69259710 Msa0467830:intron 40.0%
CAAAGGTTGTGCAAGAGAAA+AGG - chr3_3:69259938-69259957 None:intergenic 40.0%
! CTTTTCTCTTGCACAACCTT+TGG + chr3_3:69259936-69259955 Msa0467830:intron 40.0%
!!! TTTGTTTTGGGGAAGCACTT+GGG + chr3_3:69259980-69259999 Msa0467830:intron 40.0%
TGTCACCGTGACATTAAATC+TGG + chr3_3:69260003-69260022 Msa0467830:intron 40.0%
GTCACCGTGACATTAAATCT+GGG + chr3_3:69260004-69260023 Msa0467830:intron 40.0%
GATGTGTTGTATGTGTTGTG+TGG - chr3_3:69260063-69260082 None:intergenic 40.0%
CACAACACATACAACACATC+TGG + chr3_3:69260063-69260082 Msa0467830:intron 40.0%
!! TACAAAGGTGTTGTGTTGTG+TGG - chr3_3:69260090-69260109 None:intergenic 40.0%
!! CCCAAGTATTTCCCTTGTTT+TGG + chr3_3:69260145-69260164 Msa0467830:intron 40.0%
! TTTTCTCTCTGCAGGAACTT+TGG + chr3_3:69260171-69260190 Msa0467830:intron 40.0%
!! GGAATTCTTTTAGGTGAGGA+CGG - chr3_3:69260267-69260286 None:intergenic 40.0%
GAATTCCTTGAGAGAGTTTC+TGG + chr3_3:69260280-69260299 Msa0467830:intron 40.0%
AAAGACCAGAAACTCTCTCA+AGG - chr3_3:69260288-69260307 None:intergenic 40.0%
! GCTTTGGATCAAGCACATTT+AGG - chr3_3:69260360-69260379 None:intergenic 40.0%
AAGATTCACGGAATGTGTGA+TGG - chr3_3:69260396-69260415 None:intergenic 40.0%
CCGTGAATCTTGTGTTAAAG+TGG + chr3_3:69260405-69260424 Msa0467830:CDS 40.0%
TGATAATTGACAACTCCCCA+CGG + chr3_3:69260482-69260501 Msa0467830:CDS 40.0%
ATACTACAAACATACCCGTG+GGG - chr3_3:69260500-69260519 None:intergenic 40.0%
TCCAAATGCAACTATAAGGG+CGG - chr3_3:69260581-69260600 None:intergenic 40.0%
TTTCTTTGTTCCCAGGCATT+TGG + chr3_3:69260762-69260781 Msa0467830:intron 40.0%
TTTGGATTCCAAGTGGACAA+TGG + chr3_3:69260780-69260799 Msa0467830:CDS 40.0%
TTGGTATTCCATTGTCCACT+TGG - chr3_3:69260791-69260810 None:intergenic 40.0%
ACTTCCTTTCTTGGAGAGTT+TGG + chr3_3:69260857-69260876 Msa0467830:CDS 40.0%
TTGCTCAAAGGTTCAAGCTA+CGG + chr3_3:69260907-69260926 Msa0467830:CDS 40.0%
CTCAGTGAAGGGGAATAGTT+GGG + chr3_3:69257925-69257944 Msa0467830:intron 45.0%
CTAATCAATGGCCACCAACA+AGG + chr3_3:69258145-69258164 Msa0467830:intron 45.0%
CAGCGATCTTCAAAAACCCT+AGG - chr3_3:69258294-69258313 None:intergenic 45.0%
GAATCCGCTAAGAAGAACTC+GGG + chr3_3:69258349-69258368 Msa0467830:CDS 45.0%
GAGATCCGTTGTTGAAACAG+TGG + chr3_3:69258378-69258397 Msa0467830:CDS 45.0%
ATCCGTTGTTGAAACAGTGG+AGG + chr3_3:69258381-69258400 Msa0467830:CDS 45.0%
TCCGTTGTTGAAACAGTGGA+GGG + chr3_3:69258382-69258401 Msa0467830:CDS 45.0%
TCCCTCCACTGTTTCAACAA+CGG - chr3_3:69258386-69258405 None:intergenic 45.0%
AGGACCAACAACAGTGGTTA+CGG - chr3_3:69258410-69258429 None:intergenic 45.0%
CAGAAAGTAACACATGAGGC+AGG + chr3_3:69259019-69259038 Msa0467830:CDS 45.0%
CAACCATGCAATCAAGGACA+TGG + chr3_3:69259225-69259244 Msa0467830:CDS 45.0%
AATCAAGGACATGGCTGGAA+AGG + chr3_3:69259234-69259253 Msa0467830:CDS 45.0%
ATCAAGGACATGGCTGGAAA+GGG + chr3_3:69259235-69259254 Msa0467830:CDS 45.0%
AAGTCCAGGACAAGAGTGAT+AGG - chr3_3:69259591-69259610 None:intergenic 45.0%
TATCACTCTTGTCCTGGACT+TGG + chr3_3:69259590-69259609 Msa0467830:CDS 45.0%
CTTTCTTACCATCCAAGTCC+AGG - chr3_3:69259605-69259624 None:intergenic 45.0%
!!! CTTTGTTTTGGGGAAGCACT+TGG + chr3_3:69259979-69259998 Msa0467830:intron 45.0%
GTGGCCCAGATTTAATGTCA+CGG - chr3_3:69260011-69260030 None:intergenic 45.0%
TGTGTGGCTCATATGTTGTG+TGG - chr3_3:69260047-69260066 None:intergenic 45.0%
TGGCGAAATATCTTCCGCTT+TGG - chr3_3:69260376-69260395 None:intergenic 45.0%
GATAATTGACAACTCCCCAC+GGG + chr3_3:69260483-69260502 Msa0467830:CDS 45.0%
!!! TATTTTGGTGTAGGGGACTG+AGG - chr3_3:69260605-69260624 None:intergenic 45.0%
AACAGTTCAGGTGTTCAGAG+AGG - chr3_3:69260649-69260668 None:intergenic 45.0%
CACTTGGAATCCAAATGCCT+GGG - chr3_3:69260775-69260794 None:intergenic 45.0%
TCGCCAAACCAACTCTCAAT+TGG - chr3_3:69260810-69260829 None:intergenic 45.0%
CCTACCAAACTCTCCAAGAA+AGG - chr3_3:69260864-69260883 None:intergenic 45.0%
CCTTTCTTGGAGAGTTTGGT+AGG + chr3_3:69260861-69260880 Msa0467830:CDS 45.0%
!! TGGTAGGAGTTGATGATGTC+CGG + chr3_3:69260877-69260896 Msa0467830:CDS 45.0%
! ACCTTTGAGCAATTTTGGGC+CGG - chr3_3:69260899-69260918 None:intergenic 45.0%
TGCTCAAAGGTTCAAGCTAC+GGG + chr3_3:69260908-69260927 Msa0467830:CDS 45.0%
GCTCAGTGAAGGGGAATAGT+TGG + chr3_3:69257924-69257943 Msa0467830:intron 50.0%
AGGTCCCGAGTTCTTCTTAG+CGG - chr3_3:69258356-69258375 None:intergenic 50.0%
GGAACCGTAACCACTGTTGT+TGG + chr3_3:69258403-69258422 Msa0467830:CDS 50.0%
GTAGACAGGACCAACAACAG+TGG - chr3_3:69258416-69258435 None:intergenic 50.0%
GCAGGGAAAGTTGTGAGTGT+GGG + chr3_3:69259037-69259056 Msa0467830:CDS 50.0%
ATCTCTGCTGCTGCATGGAA+TGG - chr3_3:69259169-69259188 None:intergenic 50.0%
TTGTCATCTCTGCTGCTGCA+TGG - chr3_3:69259174-69259193 None:intergenic 50.0%
CAGCCATGTCCTTGATTGCA+TGG - chr3_3:69259231-69259250 None:intergenic 50.0%
CATGCAATCAAGGACATGGC+TGG + chr3_3:69259229-69259248 Msa0467830:CDS 50.0%
CCAGGACAAGAGTGATAGGA+GGG - chr3_3:69259587-69259606 None:intergenic 50.0%
TCCAGGACAAGAGTGATAGG+AGG - chr3_3:69259588-69259607 None:intergenic 50.0%
ACTCTTGTCCTGGACTTGGA+TGG + chr3_3:69259594-69259613 Msa0467830:CDS 50.0%
ACCACCTTTCTGCATAGGAC+TGG + chr3_3:69259752-69259771 Msa0467830:intron 50.0%
ACCAGTCCTATGCAGAAAGG+TGG - chr3_3:69259756-69259775 None:intergenic 50.0%
GAGACCAGTCCTATGCAGAA+AGG - chr3_3:69259759-69259778 None:intergenic 50.0%
GTGTGGCAATGTGTGTTGTG+TGG - chr3_3:69260030-69260049 None:intergenic 50.0%
GCCGCCCTTATAGTTGCATT+TGG + chr3_3:69260577-69260596 Msa0467830:intron 50.0%
CCACTTGGAATCCAAATGCC+TGG - chr3_3:69260776-69260795 None:intergenic 50.0%
CCAGGCATTTGGATTCCAAG+TGG + chr3_3:69260773-69260792 Msa0467830:intron 50.0%
!! GAGTTGGTTTGGCGATCCTT+CGG + chr3_3:69260815-69260834 Msa0467830:CDS 50.0%
GTTTGGCGATCCTTCGGATA+AGG + chr3_3:69260821-69260840 Msa0467830:CDS 50.0%
TCCGGCCCAAAATTGCTCAA+AGG + chr3_3:69260895-69260914 Msa0467830:CDS 50.0%
GGCAGGGAAAGTTGTGAGTG+TGG + chr3_3:69259036-69259055 Msa0467830:CDS 55.0%
GTTGTGAGTGTGGGTCGATC+TGG + chr3_3:69259046-69259065 Msa0467830:CDS 55.0%
TCTGCTGCTGCATGGAATGG+TGG - chr3_3:69259166-69259185 None:intergenic 55.0%
CCCTCCTATCACTCTTGTCC+TGG + chr3_3:69259584-69259603 Msa0467830:CDS 55.0%
GTGAGTGTGGGTCGATCTGG+AGG + chr3_3:69259049-69259068 Msa0467830:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69257866 69260992 69257866 ID=Msa0467830;Name=Msa0467830
chr3_3 mRNA 69257866 69260992 69257866 ID=Msa0467830-mRNA-1;Parent=Msa0467830;Name=Msa0467830-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|0.75|0.71|0.62|8|0|353
chr3_3 exon 69257866 69257870 69257866 ID=Msa0467830-mRNA-1:exon:16371;Parent=Msa0467830-mRNA-1
chr3_3 exon 69258238 69258244 69258238 ID=Msa0467830-mRNA-1:exon:16372;Parent=Msa0467830-mRNA-1
chr3_3 exon 69258262 69258486 69258262 ID=Msa0467830-mRNA-1:exon:16373;Parent=Msa0467830-mRNA-1
chr3_3 exon 69258938 69259132 69258938 ID=Msa0467830-mRNA-1:exon:16374;Parent=Msa0467830-mRNA-1
chr3_3 exon 69259139 69259327 69259139 ID=Msa0467830-mRNA-1:exon:16375;Parent=Msa0467830-mRNA-1
chr3_3 exon 69259567 69259615 69259567 ID=Msa0467830-mRNA-1:exon:16376;Parent=Msa0467830-mRNA-1
chr3_3 exon 69260329 69260504 69260329 ID=Msa0467830-mRNA-1:exon:16377;Parent=Msa0467830-mRNA-1
chr3_3 exon 69260777 69260992 69260777 ID=Msa0467830-mRNA-1:exon:16378;Parent=Msa0467830-mRNA-1
chr3_3 CDS 69257866 69257870 69257866 ID=Msa0467830-mRNA-1:cds;Parent=Msa0467830-mRNA-1
chr3_3 CDS 69258238 69258244 69258238 ID=Msa0467830-mRNA-1:cds;Parent=Msa0467830-mRNA-1
chr3_3 CDS 69258262 69258486 69258262 ID=Msa0467830-mRNA-1:cds;Parent=Msa0467830-mRNA-1
chr3_3 CDS 69258938 69259132 69258938 ID=Msa0467830-mRNA-1:cds;Parent=Msa0467830-mRNA-1
chr3_3 CDS 69259139 69259327 69259139 ID=Msa0467830-mRNA-1:cds;Parent=Msa0467830-mRNA-1
chr3_3 CDS 69259567 69259615 69259567 ID=Msa0467830-mRNA-1:cds;Parent=Msa0467830-mRNA-1
chr3_3 CDS 69260329 69260504 69260329 ID=Msa0467830-mRNA-1:cds;Parent=Msa0467830-mRNA-1
chr3_3 CDS 69260777 69260992 69260777 ID=Msa0467830-mRNA-1:cds;Parent=Msa0467830-mRNA-1
Gene Sequence

>Msa0467830

ATGGGAGTTGAAGTTGAAAACACGAACAAAGAACTAAAGCGCCTAGGGTTTTTGAAGATCGCTGCTATTCATACTTATGTGTTTGTCTCATATCTGTATGAATCCGCTAAGAAGAACTCGGGACCTTTGAGATCCGTTGTTGAAACAGTGGAGGGAACCGTAACCACTGTTGTTGGTCCTGTCTACAACAAATTCAAGGACGTCCCTGACGATGTCCTTGTTTTTGTTGACAACAAGGTGGATGAAGCAACCTACAAGTTCAGTGAACATGCTACTCATATTGCTAAGCAGCTTACGGACAAAACAAAATTCTTGATTCAGAAAGTAACACATGAGGCAGGGAAAGTTGTGAGTGTGGGTCGATCTGGAGGACCAAGAGCAGCTGTAGATTATGTTGCTACAGAGACCAAGAATTTGCTACTAATCAATTCACTTTGGACTGGACTCAACAAATTTCCACCATTCCATGCAGCAGCAGAGATGACAATTTCAACTACTGCTCACTGGTCTGAGAAATACAACCATGCAATCAAGGACATGGCTGGAAAGGGTTATAGTTTTGTTGGGTATTTACCTTTGATTCCTATTGATGATATATCTAAGGCATTTAAGCAGGGAGAATCATGGACTCGGAGCTGCCCTCCTATCACTCTTGTCCTGGACTTGGATGCTAGTCAAAGTATCTATGCTGACCAAATCCTAAATGTGCTTGATCCAAAGCGGAAGATATTTCGCCATCACACATTCCGTGAATCTTGTGTTAAAGTGGAGGGGAATTACCTCAAAGATTTAACAGTGCTTGGTCGTGATTTAGCACATGTTATGATAATTGACAACTCCCCACGGGCATTTGGATTCCAAGTGGACAATGGAATACCAATTGAGAGTTGGTTTGGCGATCCTTCGGATAAGGAATTGCTTTTATTACTTCCTTTCTTGGAGAGTTTGGTAGGAGTTGATGATGTCCGGCCCAAAATTGCTCAAAGGTTCAAGCTACGGGATAAAATTGCTGCTGCTGTGCATCCTTTGAATACAAATGAAAGGGATTTCTTGTCTGAATAA

Protein sequence

>Msa0467830

MGVEVENTNKELKRLGFLKIAAIHTYVFVSYLYESAKKNSGPLRSVVETVEGTVTTVVGPVYNKFKDVPDDVLVFVDNKVDEATYKFSEHATHIAKQLTDKTKFLIQKVTHEAGKVVSVGRSGGPRAAVDYVATETKNLLLINSLWTGLNKFPPFHAAAEMTISTTAHWSEKYNHAIKDMAGKGYSFVGYLPLIPIDDISKAFKQGESWTRSCPPITLVLDLDASQSIYADQILNVLDPKRKIFRHHTFRESCVKVEGNYLKDLTVLGRDLAHVMIIDNSPRAFGFQVDNGIPIESWFGDPSDKELLLLLPFLESLVGVDDVRPKIAQRFKLRDKIAAAVHPLNTNERDFLSE*