AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379640 MtrunA17_Chr3g0132751 84.250 400 21 2 1 399 1 359 0.0 623
Msa0379640 MtrunA17_Chr4g0049741 39.779 362 131 9 54 399 29 319 4.75e-69 221
Msa0379640 MtrunA17_Chr5g0427661 46.957 230 110 6 12 235 14 237 4.54e-55 183
Msa0379640 MtrunA17_Chr3g0132761 52.663 169 74 3 68 235 71 234 7.78e-51 173
Msa0379640 MtrunA17_Chr3g0102511 40.930 215 60 6 154 347 4 172 3.20e-32 127
Msa0379640 MtrunA17_Chr4g0002231 46.154 104 47 3 147 243 42 143 4.78e-24 97.1
Msa0379640 MtrunA17_Chr4g0002261 59.322 59 23 1 112 169 6 64 5.43e-15 69.3
Msa0379640 MtrunA17_Chr4g0002251 68.421 38 12 0 194 231 2 39 7.10e-13 63.5
Msa0379640 MtrunA17_Chr3g0091641 57.143 49 21 0 122 170 490 538 9.60e-12 66.6
Msa0379640 MtrunA17_Chr4g0061021 57.143 49 21 0 122 170 497 545 4.09e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379640 AT3G21175.2 55.491 173 72 2 68 235 79 251 2.87e-55 184
Msa0379640 AT3G21175.1 54.857 175 72 3 68 235 79 253 2.38e-53 179
Msa0379640 AT1G51600.1 54.190 179 67 4 68 235 83 257 1.78e-52 177
Msa0379640 AT1G51600.2 54.190 179 67 4 68 235 83 257 1.78e-52 177
Msa0379640 AT4G24470.1 49.112 169 82 3 68 235 83 248 1.63e-44 157
Msa0379640 AT4G24470.2 49.112 169 82 3 68 235 83 248 1.63e-44 157
Msa0379640 AT4G24470.3 49.112 169 82 3 68 235 83 248 2.35e-44 156
Msa0379640 AT3G21175.3 51.449 138 60 3 68 198 79 216 4.86e-32 121

Find 159 sgRNAs with CRISPR-Local

Find 506 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTGGCATGGGAGCTGCCT+GGG 0.155784 3_1:-80938414 Msa0379640:CDS
CCCTAGTTTGAATATCAATT+TGG 0.206953 3_1:-80936128 Msa0379640:three_prime_UTR
TTTAAAACTCACAGAGATTC+AGG 0.223095 3_1:+80939006 None:intergenic
CATGCATTGCACAAAGTTCT+TGG 0.241152 3_1:+80938834 None:intergenic
TTCATTTCAACTCTCTTCTA+TGG 0.262209 3_1:-80944187 Msa0379640:exon
GATAATCTTCCTTGAGTGTT+TGG 0.263324 3_1:-80936268 Msa0379640:three_prime_UTR
TCCCTGGCATGGGAGCTGCC+TGG 0.271945 3_1:-80938415 Msa0379640:CDS
AGTTCAGCTGTGGGCATGCC+TGG 0.281391 3_1:+80941759 None:intergenic
GGATATTCTTCATGTAGATA+TGG 0.286797 3_1:-80936473 Msa0379640:three_prime_UTR
ATAATCTTCCTTGAGTGTTT+GGG 0.304901 3_1:-80936267 Msa0379640:three_prime_UTR
GCTATTCTTCGTGAAAGATT+TGG 0.306955 3_1:+80941599 None:intergenic
GCAGCTGCAGTTGCAGTTGC+AGG 0.307759 3_1:+80944009 None:intergenic
TCCTGGAAACTTTGATTAGA+AGG 0.311641 3_1:-80936544 Msa0379640:exon
TGCCATTTGATCAGAGTAAC+AGG 0.315044 3_1:-80941737 Msa0379640:CDS
GATACAGATATTGACATTCC+TGG 0.340740 3_1:-80936561 Msa0379640:CDS
GAAGTTTAGGCTTGTGCTGC+TGG 0.343501 3_1:-80936096 Msa0379640:three_prime_UTR
GGACTCTTAGTGGGAGCATT+TGG 0.345347 3_1:-80936075 Msa0379640:three_prime_UTR
GCTGGTCCGCGACGCATTGC+AGG 0.357972 3_1:+80938861 None:intergenic
CTAATCCACCACTGGGTGTA+AGG 0.365803 3_1:+80938375 None:intergenic
ATTGGTAATTTGTCATTCTT+CGG 0.372377 3_1:-80936893 Msa0379640:CDS
TCCTGCAATCTCTAGGGCTT+GGG 0.375005 3_1:-80941638 Msa0379640:intron
ACCAGACGACTTTGCTCAAC+AGG 0.377857 3_1:+80938149 None:intergenic
AGAGCTTCTCCACCCTTGAT+AGG 0.380566 3_1:+80936367 None:intergenic
TGATGATACTATGGATGAAT+TGG 0.387456 3_1:-80944079 Msa0379640:CDS
ACCTTCTAATCAAAGTTTCC+AGG 0.390784 3_1:+80936543 None:intergenic
CCCCAGGCAGCTCCCATGCC+AGG 0.395526 3_1:+80938413 None:intergenic
CAATGATATTAGACAGTTAT+GGG 0.400631 3_1:-80936434 Msa0379640:three_prime_UTR
TGCTAGGATGCATCGGGAAA+AGG 0.402415 3_1:-80939112 Msa0379640:intron
TCAATAGCTGGAATTGTTGC+AGG 0.402850 3_1:+80944138 None:intergenic
ACTCACAGAGATTCAGGATT+AGG 0.406041 3_1:+80939012 None:intergenic
TGATAGCAATCTTCAAAACT+AGG 0.409454 3_1:-80944212 Msa0379640:five_prime_UTR
ACAGTTGGCTTGACATCAAC+AGG 0.416226 3_1:+80937254 None:intergenic
GCTAGGATGCATCGGGAAAA+GGG 0.419663 3_1:-80939111 Msa0379640:intron
ACCTTCTGATGTGTGACATC+GGG 0.425377 3_1:+80943928 None:intergenic
GGAACCAGGGCTTTGCTTCA+AGG 0.426853 3_1:+80939077 None:intergenic
TGATGATGGTGATGATACTA+TGG 0.427625 3_1:-80944088 Msa0379640:CDS
CCTGGCATGGGAGCTGCCTG+GGG 0.430763 3_1:-80938413 Msa0379640:CDS
GATATTCTTCATGTAGATAT+GGG 0.431370 3_1:-80936472 Msa0379640:three_prime_UTR
CACAAAGTTCTTGGTCCAGC+TGG 0.446059 3_1:+80938843 None:intergenic
TTGTGCTGCTGGACTCTTAG+TGG 0.448234 3_1:-80936085 Msa0379640:three_prime_UTR
GCAATGCATGCGGCCTCATG+TGG 0.449902 3_1:-80938821 Msa0379640:CDS
CTCTAGTTGGAATTCAGCAC+AGG 0.449996 3_1:-80939055 Msa0379640:CDS
CATGAAGAATATCCAACAAA+TGG 0.450396 3_1:+80936482 None:intergenic
TTGGTGGTGTGCTGAAGTTT+AGG 0.451075 3_1:-80936109 Msa0379640:three_prime_UTR
GTCAAGCCAACTGTTCTTGA+AGG 0.454609 3_1:-80937245 Msa0379640:CDS
GCAATGATATTAGACAGTTA+TGG 0.454625 3_1:-80936435 Msa0379640:three_prime_UTR
CACCCACATAATGAATTACT+TGG 0.456717 3_1:+80936519 None:intergenic
ATTTCTTGCTAGGATGCATC+GGG 0.457873 3_1:-80939118 Msa0379640:intron
CTTTCTAATCCTTCAGATGC+AGG 0.461274 3_1:-80936600 Msa0379640:CDS
TTAGACAACAGTCCATTTGT+TGG 0.462042 3_1:-80936494 Msa0379640:three_prime_UTR
GCAATGCGTCGCGGACCAGC+TGG 0.462401 3_1:-80938858 Msa0379640:CDS
AGCAAAATGACCAACCTTGT+TGG 0.463402 3_1:+80938797 None:intergenic
GGAGGAAGTGGTGCGCAGCC+AGG 0.464266 3_1:-80941777 Msa0379640:CDS
TCCTGTTGAGCAAAGTCGTC+TGG 0.466212 3_1:-80938150 Msa0379640:intron
ACCTTCCGCACCAACAGTCT+TGG 0.467444 3_1:+80937091 None:intergenic
TTATTCTGCAATATTGATGC+TGG 0.472672 3_1:-80936327 Msa0379640:three_prime_UTR
ATGGCAAACATAGCTTTGTA+TGG 0.476366 3_1:+80935949 None:intergenic
ATGAAGTGGTAATCCTATCA+AGG 0.480064 3_1:-80936380 Msa0379640:three_prime_UTR
TTAGACAGTTATGGGAAAGT+AGG 0.481758 3_1:-80936426 Msa0379640:three_prime_UTR
TACAACATCTAATCCACCAC+TGG 0.483254 3_1:+80938367 None:intergenic
ACCCTGTTACTCTGATCAAA+TGG 0.485919 3_1:+80941735 None:intergenic
TAGTTTGAATATCAATTTGG+TGG 0.486318 3_1:-80936125 Msa0379640:three_prime_UTR
GAAGAATAGCCTCCTTGGTC+AGG 0.487750 3_1:-80941586 Msa0379640:CDS
CCAAATTGATATTCAAACTA+GGG 0.487766 3_1:+80936128 None:intergenic
GAGTCTCGTTCTGAGTTCCT+TGG 0.493363 3_1:-80944240 Msa0379640:five_prime_UTR
TCAATATTGCAGAATAATGT+CGG 0.496407 3_1:+80936333 None:intergenic
TCCAAGACTGTTGGTGCGGA+AGG 0.498699 3_1:-80937092 Msa0379640:CDS
AAAGCCCTGGTTCCTCTAGT+TGG 0.498939 3_1:-80939068 Msa0379640:CDS
TGTGCTGCTGGACTCTTAGT+GGG 0.500062 3_1:-80936084 Msa0379640:three_prime_UTR
GAAATTTAGAGATAAAACTT+TGG 0.501624 3_1:-80936174 Msa0379640:three_prime_UTR
TTCACGAAGAATAGCCTCCT+TGG 0.502425 3_1:-80941591 Msa0379640:CDS
TGAGACAATGGTCCCTGGCA+TGG 0.505383 3_1:-80938426 Msa0379640:CDS
CGGCCTCATGTGGGCCAACA+AGG 0.505964 3_1:-80938811 Msa0379640:CDS
GAACCAGGGCTTTGCTTCAA+GGG 0.507428 3_1:+80939078 None:intergenic
TATTTCTTGCTAGGATGCAT+CGG 0.512222 3_1:-80939119 Msa0379640:intron
TTCGGAAAATGATGATGAGC+AGG 0.513065 3_1:-80936875 Msa0379640:intron
GATAGCAATCTTCAAAACTA+GGG 0.513390 3_1:-80944211 Msa0379640:five_prime_UTR
TGATGTATAATTGCTTGACT+TGG 0.513708 3_1:-80936229 Msa0379640:three_prime_UTR
TTAGACATTCCTGCATCTGA+AGG 0.515486 3_1:+80936591 None:intergenic
GCTGCAGCTGCAACACGTAT+TGG 0.518862 3_1:-80943991 Msa0379640:CDS
GTACCAAGTAATTCATTATG+TGG 0.520173 3_1:-80936522 Msa0379640:three_prime_UTR
AATTCCCCTTCAAGAACAGT+TGG 0.521168 3_1:+80937239 None:intergenic
TGGAATTCAGCACAGGGTGC+TGG 0.521463 3_1:-80939048 Msa0379640:CDS
GGTAATTCAGTGAACGTTGA+AGG 0.522137 3_1:-80944042 Msa0379640:CDS
CTCATGTGGGCCAACAAGGT+TGG 0.522969 3_1:-80938807 Msa0379640:CDS
GAGACAATGGTCCCTGGCAT+GGG 0.527922 3_1:-80938425 Msa0379640:CDS
TGTATGGAATAAAATAGATA+AGG 0.530458 3_1:+80935965 None:intergenic
CAATATTGCAGAATAATGTC+GGG 0.530929 3_1:+80936334 None:intergenic
TAATCCACCACTGGGTGTAA+GGG 0.531753 3_1:+80938376 None:intergenic
ATTGTTTACAGCTGAGACAA+TGG 0.531998 3_1:-80938438 Msa0379640:intron
TCTCTAAATTTCAGGTAGCA+AGG 0.533563 3_1:+80936185 None:intergenic
TCGTCGTCGTCATCAATAGC+TGG 0.535781 3_1:+80944126 None:intergenic
ATCAAATGGCAGTTCAGCTG+TGG 0.540344 3_1:+80941749 None:intergenic
TACCTTCTGATGTGTGACAT+CGG 0.541157 3_1:+80943927 None:intergenic
GAAGAACCTTCCAAGACTGT+TGG 0.545293 3_1:-80937101 Msa0379640:CDS
ACCAAATTGATATTCAAACT+AGG 0.556810 3_1:+80936127 None:intergenic
GACACTCAGAGATCTCAGTA+AGG 0.560391 3_1:-80938186 Msa0379640:CDS
GCACAGGGTGCTGGTCAAGA+TGG 0.560830 3_1:-80939039 Msa0379640:CDS
GCACCCTTGAAGCAAAGCCC+TGG 0.567134 3_1:-80939081 Msa0379640:CDS
ACTACAACTACCTCATCACC+AGG 0.568839 3_1:+80937047 None:intergenic
TCAAGCCAACTGTTCTTGAA+GGG 0.572288 3_1:-80937244 Msa0379640:CDS
TAGATACTCCGTGAGAAAAG+AGG 0.572399 3_1:-80941522 Msa0379640:CDS
CCCCGATGTCACACATCAGA+AGG 0.572507 3_1:-80943929 Msa0379640:intron
ATTTCAACTCTCTTCTATGG+CGG 0.579097 3_1:-80944184 Msa0379640:exon
CTCAGAGATCTCAGTAAGGG+TGG 0.581454 3_1:-80938182 Msa0379640:CDS
TGGTGATGCCATCCAAAGGA+TGG 0.582601 3_1:-80936154 Msa0379640:three_prime_UTR
CCCAGGCAGCTCCCATGCCA+GGG 0.582627 3_1:+80938414 None:intergenic
TGCAATCTCTAGGGCTTGGG+CGG 0.583296 3_1:-80941635 Msa0379640:intron
GAATTGGATGAAGAAACAAA+TGG 0.583383 3_1:-80944063 Msa0379640:CDS
TATGTAACAGCGAAATGAAG+TGG 0.583425 3_1:-80936394 Msa0379640:three_prime_UTR
AATCCACCACTGGGTGTAAG+GGG 0.585975 3_1:+80938377 None:intergenic
TACCAAGTAATTCATTATGT+GGG 0.587977 3_1:-80936521 Msa0379640:three_prime_UTR
GCAGGATCCTCAGATGGAAG+AGG 0.588835 3_1:+80944156 None:intergenic
CAACCTTGTTGGCCCACATG+AGG 0.589336 3_1:+80938808 None:intergenic
TGCATCAAACCCTGGTGATG+AGG 0.590145 3_1:-80937057 Msa0379640:intron
GAATTCCAACTAGAGGAACC+AGG 0.591328 3_1:+80939063 None:intergenic
GGGATTAACTATAAAGCCCC+AGG 0.592871 3_1:+80938397 None:intergenic
AACACGATCCCAAACACTCA+AGG 0.596955 3_1:+80936259 None:intergenic
CAATGCATGCGGCCTCATGT+GGG 0.602828 3_1:-80938820 Msa0379640:CDS
ACAGCTGAGACAATGGTCCC+TGG 0.606434 3_1:-80938431 Msa0379640:intron
TGAAGTGGTAATCCTATCAA+GGG 0.608458 3_1:-80936379 Msa0379640:three_prime_UTR
TCAAATGGCAGTTCAGCTGT+GGG 0.609776 3_1:+80941750 None:intergenic
ATTGTTGCAGGATCCTCAGA+TGG 0.609966 3_1:+80944150 None:intergenic
TGATGACGACGACGACGATG+AGG 0.610620 3_1:-80944118 Msa0379640:CDS
ATGTCAATATCTGTATCTGA+AGG 0.610986 3_1:+80936567 None:intergenic
TCCGCACCAACAGTCTTGGA+AGG 0.612491 3_1:+80937095 None:intergenic
GGAACAACCTCTTCCATCTG+AGG 0.612918 3_1:-80944163 Msa0379640:CDS
GAAGAATGACAAATTACCAA+TGG 0.616321 3_1:+80936895 None:intergenic
GGATTAGAAAGCTCGACCAC+GGG 0.617309 3_1:+80936612 None:intergenic
CAAGCCAACTGTTCTTGAAG+GGG 0.619999 3_1:-80937243 Msa0379640:CDS
ACCTTCCAAGACTGTTGGTG+CGG 0.622461 3_1:-80937096 Msa0379640:CDS
CTAGGATGCATCGGGAAAAG+GGG 0.623092 3_1:-80939110 Msa0379640:intron
ATGTTCATATAAATAAACAC+TGG 0.628923 3_1:-80936009 Msa0379640:three_prime_UTR
AATCCCCTTACACCCAGTGG+TGG 0.629065 3_1:-80938380 Msa0379640:CDS
TGAGAAAAGAGGTGGCAGAA+AGG 0.629475 3_1:-80941511 Msa0379640:intron
CAAATTGATATTCAAACTAG+GGG 0.630184 3_1:+80936129 None:intergenic
GATGAGGACTATACTGATGA+TGG 0.633851 3_1:-80944102 Msa0379640:CDS
AGACGTAGATGTCAACATTG+TGG 0.641093 3_1:-80938903 Msa0379640:CDS
AGGATTAGAAAGCTCGACCA+CGG 0.642905 3_1:+80936611 None:intergenic
AGTGGTAATCCTATCAAGGG+TGG 0.652646 3_1:-80936376 Msa0379640:three_prime_UTR
AGAACTTTGTGCAATGCATG+CGG 0.654215 3_1:-80938831 Msa0379640:CDS
ACTTTGGTGATGCCATCCAA+AGG 0.657076 3_1:-80936158 Msa0379640:three_prime_UTR
ACAACATCTAATCCACCACT+GGG 0.660196 3_1:+80938368 None:intergenic
CTGTGCTGAATTCCAACTAG+AGG 0.664420 3_1:+80939056 None:intergenic
AATACTCCTGCAATGCGTCG+CGG 0.665782 3_1:-80938867 Msa0379640:CDS
ACACTCAGAGATCTCAGTAA+GGG 0.666946 3_1:-80938185 Msa0379640:CDS
TCTAGTTGGAATTCAGCACA+GGG 0.669194 3_1:-80939054 Msa0379640:CDS
ATACTCCGTGAGAAAAGAGG+TGG 0.671679 3_1:-80941519 Msa0379640:CDS
AATGATCATGCATCAAACCC+TGG 0.673623 3_1:-80937065 Msa0379640:CDS
AATTCCAACTAGAGGAACCA+GGG 0.673882 3_1:+80939064 None:intergenic
CCTTCTGATGTGTGACATCG+GGG 0.685593 3_1:+80943929 None:intergenic
ATATGACCTACAGGAACCCG+TGG 0.688581 3_1:-80936628 Msa0379640:intron
GTTGGCTTGACATCAACAGG+AGG 0.690482 3_1:+80937257 None:intergenic
TTGGCTTGACATCAACAGGA+GGG 0.707354 3_1:+80937258 None:intergenic
GCCATTTGATCAGAGTAACA+GGG 0.709466 3_1:-80941736 Msa0379640:intron
CTACAACTACCTCATCACCA+GGG 0.715371 3_1:+80937048 None:intergenic
GTTAATCCCCTTACACCCAG+TGG 0.724772 3_1:-80938383 Msa0379640:CDS
TTCACGGTACCTGACCAAGG+AGG 0.733564 3_1:+80941577 None:intergenic
AAATTGATATTCAAACTAGG+GGG 0.734567 3_1:+80936130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTACAAATTTAAATAC+AGG + chr3_1:80938388-80938407 None:intergenic 10.0%
!!! AAAAACTATGTTTTTTTATT+AGG - chr3_1:80939455-80939474 Msa0379640:intron 10.0%
!!! AAAACTATGTTTTTTTATTA+GGG - chr3_1:80939456-80939475 Msa0379640:intron 10.0%
!!! AATTTAAAACACTTATAAAA+TGG + chr3_1:80940301-80940320 None:intergenic 10.0%
!!! ATTTTGTTGTATAATATTAT+TGG - chr3_1:80941054-80941073 Msa0379640:intron 10.0%
!!! TTTATTCTTTTAATTCAATT+TGG - chr3_1:80943282-80943301 Msa0379640:intron 10.0%
!!! TTATTCTTTTAATTCAATTT+GGG - chr3_1:80943283-80943302 Msa0379640:intron 10.0%
!! ATACATAATCAAGAAAATTA+TGG - chr3_1:80936553-80936572 Msa0379640:CDS 15.0%
!!! TAAGATTTTATGATTCAAAT+CGG + chr3_1:80936795-80936814 None:intergenic 15.0%
!!! ATTTTATTCATAAACTAAGA+CGG - chr3_1:80937259-80937278 Msa0379640:CDS 15.0%
!! AGAATAATCAGTTTAAAAAT+AGG + chr3_1:80937363-80937382 None:intergenic 15.0%
!!! AAATTTGAAACAATTTACAA+TGG + chr3_1:80938294-80938313 None:intergenic 15.0%
!!! TAACTTATAACCATAATTTT+GGG + chr3_1:80939148-80939167 None:intergenic 15.0%
!!! ATAACTTATAACCATAATTT+TGG + chr3_1:80939149-80939168 None:intergenic 15.0%
!!! AAACTATGTTTTTTTATTAG+GGG - chr3_1:80939457-80939476 Msa0379640:intron 15.0%
!!! TTCATTTTTAATATTTGAAC+AGG - chr3_1:80939480-80939499 Msa0379640:intron 15.0%
!!! TCATTTTTAATATTTGAACA+GGG - chr3_1:80939481-80939500 Msa0379640:intron 15.0%
!! ACAATGAATGTATTTATAAA+AGG + chr3_1:80940247-80940266 None:intergenic 15.0%
!!! AGAATTCGAAAATTTTAAAT+CGG + chr3_1:80940500-80940519 None:intergenic 15.0%
!! AATTGAGTTTACTTTAAATT+TGG + chr3_1:80940623-80940642 None:intergenic 15.0%
!! ATCAGAAATAAAAAGTAATA+AGG + chr3_1:80941985-80942004 None:intergenic 15.0%
!! ATATATTCATTACAAACTAT+TGG - chr3_1:80942290-80942309 Msa0379640:intron 15.0%
!! TATATTCATTACAAACTATT+GGG - chr3_1:80942291-80942310 Msa0379640:intron 15.0%
!!! TATTTGAAAATGTTGATAAA+AGG + chr3_1:80942675-80942694 None:intergenic 15.0%
!!! CAAATAAACTTTTTTGAAAA+TGG - chr3_1:80942689-80942708 Msa0379640:intron 15.0%
!!! TATTCTTTTAATTCAATTTG+GGG - chr3_1:80943284-80943303 Msa0379640:intron 15.0%
!! AAAAAAAAAAAGAGAAGAAG+AGG - chr3_1:80935982-80936001 Msa0379640:three_prime_UTR 20.0%
!! TTGTTTATAGACTGAAAATT+AGG - chr3_1:80936587-80936606 Msa0379640:CDS 20.0%
!! TGTTTCAAATCTTAACATAT+GGG - chr3_1:80936725-80936744 Msa0379640:intron 20.0%
!!! TAATCTTATTTTCGAAGAAT+CGG - chr3_1:80936870-80936889 Msa0379640:intron 20.0%
!!! ATTATTTCAAGTGTGATTTA+AGG - chr3_1:80937093-80937112 Msa0379640:CDS 20.0%
!! TGATTATTCTTAAACTCAAA+AGG - chr3_1:80937373-80937392 Msa0379640:intron 20.0%
!! ATTGAAAATATCACTTCTAT+AGG - chr3_1:80937479-80937498 Msa0379640:intron 20.0%
!! AAGCTTTACACATAATAATT+TGG - chr3_1:80937768-80937787 Msa0379640:intron 20.0%
!! AGCTTTACACATAATAATTT+GGG - chr3_1:80937769-80937788 Msa0379640:intron 20.0%
!! AAAAAAGAAATATTGATGTC+TGG - chr3_1:80937798-80937817 Msa0379640:intron 20.0%
!! ACTGTAATTTACAAAAACAT+AGG - chr3_1:80937949-80937968 Msa0379640:intron 20.0%
!!! TATATTAGTTCTGTAAAAGT+AGG + chr3_1:80938030-80938049 None:intergenic 20.0%
!!! ACTATTTTGATTTTGATCAT+GGG + chr3_1:80938072-80938091 None:intergenic 20.0%
!!! AACTATTTTGATTTTGATCA+TGG + chr3_1:80938073-80938092 None:intergenic 20.0%
!!! AAATAAATCATCACTTTTTG+GGG + chr3_1:80938831-80938850 None:intergenic 20.0%
!!! GAAATAAATCATCACTTTTT+GGG + chr3_1:80938832-80938851 None:intergenic 20.0%
!!! AGAAATAAATCATCACTTTT+TGG + chr3_1:80938833-80938852 None:intergenic 20.0%
!!! GTTATTTAGAGTTTAAATAG+AGG - chr3_1:80939420-80939439 Msa0379640:intron 20.0%
!!! TCTAGATATTTTAATGAACA+AGG + chr3_1:80939577-80939596 None:intergenic 20.0%
!!! TTTTAATACTATACTTGAAG+CGG + chr3_1:80939833-80939852 None:intergenic 20.0%
!! AAAAAATAATATGCTGAAAG+TGG - chr3_1:80940019-80940038 Msa0379640:intron 20.0%
!!! GTATAGATGTTATTTTCTTT+TGG - chr3_1:80940150-80940169 Msa0379640:intron 20.0%
!!! TAACAATATTTTATAGAGAC+CGG - chr3_1:80940362-80940381 Msa0379640:intron 20.0%
!! ATCAACAACAATGAATTATT+AGG + chr3_1:80941021-80941040 None:intergenic 20.0%
!!! TAATAATTCATTGTTGTTGA+TGG - chr3_1:80941020-80941039 Msa0379640:intron 20.0%
!! TTCATTTCTACTTATGAATT+TGG - chr3_1:80941126-80941145 Msa0379640:intron 20.0%
!!! TATAGATCATCAATAACTTT+TGG - chr3_1:80941744-80941763 Msa0379640:CDS 20.0%
!! TTCAAACTGGTTATTAAAAT+TGG + chr3_1:80942253-80942272 None:intergenic 20.0%
!!! ATTTTAAGTTGTTTTTAGAC+AGG - chr3_1:80942322-80942341 Msa0379640:intron 20.0%
!! GAAACATATTATCTTATCAA+TGG - chr3_1:80942349-80942368 Msa0379640:intron 20.0%
!! TCTATGACTTCATTAATAAA+AGG + chr3_1:80942535-80942554 None:intergenic 20.0%
!! TTAAGTTTAGTAGAAAACTT+GGG - chr3_1:80942836-80942855 Msa0379640:intron 20.0%
!! AAATTTCATTCAAGATGAAA+AGG + chr3_1:80943003-80943022 None:intergenic 20.0%
!!! CTATTTGCATAAAACTTTTA+TGG - chr3_1:80943145-80943164 Msa0379640:intron 20.0%
!!! ATTCTTTTAATTCAATTTGG+GGG - chr3_1:80943285-80943304 Msa0379640:intron 20.0%
!!! AAGTTTTATCTCTAAATTTC+AGG + chr3_1:80944113-80944132 None:intergenic 20.0%
!! GAAATTTAGAGATAAAACTT+TGG - chr3_1:80944113-80944132 Msa0379640:CDS 20.0%
!! ATGTTCATATAAATAAACAC+TGG - chr3_1:80944278-80944297 Msa0379640:five_prime_UTR 20.0%
!! TGTATGGAATAAAATAGATA+AGG + chr3_1:80944325-80944344 None:intergenic 20.0%
!! ACGAGACTCAAATTTTTATT+CGG + chr3_1:80936036-80936055 None:intergenic 25.0%
!!! AAGACATGTTTTTTTGGATT+TGG - chr3_1:80936696-80936715 Msa0379640:intron 25.0%
! GTGTTTCAAATCTTAACATA+TGG - chr3_1:80936724-80936743 Msa0379640:intron 25.0%
! GTTATTTATTAGATTGCTGT+CGG - chr3_1:80936750-80936769 Msa0379640:intron 25.0%
! TTATTTATTAGATTGCTGTC+GGG - chr3_1:80936751-80936770 Msa0379640:intron 25.0%
! TTTGGAAATGAAACAAAAGA+AGG + chr3_1:80937033-80937052 None:intergenic 25.0%
! AAATAAAATGCTTATAAGCG+TGG - chr3_1:80937227-80937246 Msa0379640:CDS 25.0%
!! AAAACATCAAAACTCTTTTC+TGG + chr3_1:80937430-80937449 None:intergenic 25.0%
!! ATAATGTCTAAAATACAAGC+AGG + chr3_1:80937562-80937581 None:intergenic 25.0%
! TTAGACATTATTACTTCAGT+CGG - chr3_1:80937571-80937590 Msa0379640:intron 25.0%
!!! ACACATAATAATTTGGGTTT+TGG - chr3_1:80937775-80937794 Msa0379640:intron 25.0%
! TTTCCATCACATATTCTTTA+AGG - chr3_1:80937993-80938012 Msa0379640:intron 25.0%
! AATCCTTAAAGAATATGTGA+TGG + chr3_1:80937999-80938018 None:intergenic 25.0%
!! CACTTAATTTTCAATATCAG+AGG + chr3_1:80938102-80938121 None:intergenic 25.0%
! TGTAAGTTATTAGCAAATCT+TGG - chr3_1:80938128-80938147 Msa0379640:intron 25.0%
! GTAAGTTATTAGCAAATCTT+GGG - chr3_1:80938129-80938148 Msa0379640:intron 25.0%
! ACAATATATCTAAAAATGCG+TGG - chr3_1:80938248-80938267 Msa0379640:intron 25.0%
! CAATATATCTAAAAATGCGT+GGG - chr3_1:80938249-80938268 Msa0379640:intron 25.0%
! AACTCCATCAGTATAATATT+GGG - chr3_1:80938954-80938973 Msa0379640:intron 25.0%
!! ATTTTCTCATATTCTCAAGA+AGG + chr3_1:80939044-80939063 None:intergenic 25.0%
!! ATTTAGAGTTTAAATAGAGG+AGG - chr3_1:80939423-80939442 Msa0379640:intron 25.0%
!! AATTTTCTTGATCTCCTTAT+GGG + chr3_1:80939551-80939570 None:intergenic 25.0%
!! TAATTTTCTTGATCTCCTTA+TGG + chr3_1:80939552-80939571 None:intergenic 25.0%
! ACTATGAACCTACTAATAAA+AGG - chr3_1:80939632-80939651 Msa0379640:intron 25.0%
! CTATGAACCTACTAATAAAA+GGG - chr3_1:80939633-80939652 Msa0379640:intron 25.0%
!! TCAAAAACCCTTTTATTAGT+AGG + chr3_1:80939643-80939662 None:intergenic 25.0%
! TATAGTATTAAAAATCGCAC+TGG - chr3_1:80939840-80939859 Msa0379640:intron 25.0%
!!! ATATTGTTATTTGTATGAGC+CGG + chr3_1:80940351-80940370 None:intergenic 25.0%
!! AACAATATTTTATAGAGACC+GGG - chr3_1:80940363-80940382 Msa0379640:intron 25.0%
!!! TAAATCGGTGTTTTAAAAAC+CGG + chr3_1:80940485-80940504 None:intergenic 25.0%
! GGTTATTGATAAAGACTAAT+CGG + chr3_1:80940602-80940621 None:intergenic 25.0%
! CTACTTCATGAAAAAGTTTA+GGG + chr3_1:80940780-80940799 None:intergenic 25.0%
! ACTACTTCATGAAAAAGTTT+AGG + chr3_1:80940781-80940800 None:intergenic 25.0%
! ATTATAATGTAAGTTGCATC+TGG - chr3_1:80940839-80940858 Msa0379640:intron 25.0%
!!! AATATTATTGGCTCCTTTAA+AGG - chr3_1:80941066-80941085 Msa0379640:intron 25.0%
! AAATCAGACAAAACCTTTAA+AGG + chr3_1:80941082-80941101 None:intergenic 25.0%
!!! TCTGTGAGTTTTAAACATAT+TGG - chr3_1:80941289-80941308 Msa0379640:intron 25.0%
! TTGTCATTCATTATCTTTCA+TGG - chr3_1:80941816-80941835 Msa0379640:intron 25.0%
! TCAGCTGTAAACAATAAAAA+TGG + chr3_1:80941844-80941863 None:intergenic 25.0%
!! ATTTGCAATTGGCTTAATAA+AGG + chr3_1:80942203-80942222 None:intergenic 25.0%
! AAACTGGTTATTAAAATTGG+AGG + chr3_1:80942250-80942269 None:intergenic 25.0%
!! ATAACCAGTTTGAAATCAAA+TGG - chr3_1:80942259-80942278 Msa0379640:intron 25.0%
!! AAAACCATTTGATTTCAAAC+TGG + chr3_1:80942266-80942285 None:intergenic 25.0%
!!! AGTTTGAAATCAAATGGTTT+TGG - chr3_1:80942265-80942284 Msa0379640:intron 25.0%
! TAAGAGAGAATAATACAAGT+TGG - chr3_1:80942428-80942447 Msa0379640:intron 25.0%
! ATGAACTAATTACCTGTTTA+TGG - chr3_1:80942717-80942736 Msa0379640:intron 25.0%
! GTTAAGTTTAGTAGAAAACT+TGG - chr3_1:80942835-80942854 Msa0379640:intron 25.0%
!! ATTGGTAATTTGTCATTCTT+CGG - chr3_1:80943394-80943413 Msa0379640:intron 25.0%
! TACCAAGTAATTCATTATGT+GGG - chr3_1:80943766-80943785 Msa0379640:intron 25.0%
! GATATTCTTCATGTAGATAT+GGG - chr3_1:80943815-80943834 Msa0379640:intron 25.0%
! CAATGATATTAGACAGTTAT+GGG - chr3_1:80943853-80943872 Msa0379640:intron 25.0%
! TCAATATTGCAGAATAATGT+CGG + chr3_1:80943957-80943976 None:intergenic 25.0%
! AAATTGATATTCAAACTAGG+GGG + chr3_1:80944160-80944179 None:intergenic 25.0%
! CAAATTGATATTCAAACTAG+GGG + chr3_1:80944161-80944180 None:intergenic 25.0%
! CCAAATTGATATTCAAACTA+GGG + chr3_1:80944162-80944181 None:intergenic 25.0%
! ACCAAATTGATATTCAAACT+AGG + chr3_1:80944163-80944182 None:intergenic 25.0%
! TAGTTTGAATATCAATTTGG+TGG - chr3_1:80944162-80944181 Msa0379640:CDS 25.0%
! AGATTGCTATCAATTTTCCA+AGG + chr3_1:80936067-80936086 None:intergenic 30.0%
TGATAGCAATCTTCAAAACT+AGG - chr3_1:80936075-80936094 Msa0379640:three_prime_UTR 30.0%
GATAGCAATCTTCAAAACTA+GGG - chr3_1:80936076-80936095 Msa0379640:three_prime_UTR 30.0%
TTCATTTCAACTCTCTTCTA+TGG - chr3_1:80936100-80936119 Msa0379640:three_prime_UTR 30.0%
TGATGATACTATGGATGAAT+TGG - chr3_1:80936208-80936227 Msa0379640:three_prime_UTR 30.0%
GAATTGGATGAAGAAACAAA+TGG - chr3_1:80936224-80936243 Msa0379640:three_prime_UTR 30.0%
CTATGTTGCATGTATGTATA+CGG - chr3_1:80936493-80936512 Msa0379640:three_prime_UTR 30.0%
!!! ACACGTAAGACATGTTTTTT+TGG - chr3_1:80936690-80936709 Msa0379640:intron 30.0%
GATGTACTATTAATCGCTAA+GGG + chr3_1:80936946-80936965 None:intergenic 30.0%
TGATGTACTATTAATCGCTA+AGG + chr3_1:80936947-80936966 None:intergenic 30.0%
!!! CATGAGAGTTTTAAGTCATT+TGG + chr3_1:80937051-80937070 None:intergenic 30.0%
TATAAAATCCTAACCAAGGT+AGG + chr3_1:80937199-80937218 None:intergenic 30.0%
GTGTTATAAAATCCTAACCA+AGG + chr3_1:80937203-80937222 None:intergenic 30.0%
AAACTAAGACGGTGTAATAA+TGG - chr3_1:80937270-80937289 Msa0379640:intron 30.0%
AACTAAGACGGTGTAATAAT+GGG - chr3_1:80937271-80937290 Msa0379640:intron 30.0%
TGTAAAGGTTGTAATGTCAA+AGG - chr3_1:80937304-80937323 Msa0379640:intron 30.0%
! TGATGTTTTGTAGAGTTGTA+AGG - chr3_1:80937441-80937460 Msa0379640:intron 30.0%
! ATATTTTCAATGCAGAGAGA+TGG + chr3_1:80937470-80937489 None:intergenic 30.0%
TACAAACACCAGATATGATA+TGG + chr3_1:80937608-80937627 None:intergenic 30.0%
TCTACTTTAATTGTCTTGCT+TGG - chr3_1:80937651-80937670 Msa0379640:intron 30.0%
AGAAATATTGATGTCTGGTA+AGG - chr3_1:80937803-80937822 Msa0379640:intron 30.0%
! GTTACGATATTCTTGTTTGA+CGG + chr3_1:80937901-80937920 None:intergenic 30.0%
TGAACTATGCAGAGAAATTA+GGG + chr3_1:80937926-80937945 None:intergenic 30.0%
ATGAACTATGCAGAGAAATT+AGG + chr3_1:80937927-80937946 None:intergenic 30.0%
! GTCAAAGTATTTGTATGACT+TGG - chr3_1:80938167-80938186 Msa0379640:CDS 30.0%
AATGGAAAACTGTGATTAGT+TGG + chr3_1:80938276-80938295 None:intergenic 30.0%
CTAATCACAGATGAATTGAA+TGG - chr3_1:80938321-80938340 Msa0379640:intron 30.0%
GAAGAAATATTTGTAGCATG+TGG - chr3_1:80938343-80938362 Msa0379640:intron 30.0%
TTGTAATTTACTTCTTGACC+TGG - chr3_1:80938398-80938417 Msa0379640:CDS 30.0%
!! ATGATTGAAGGTTTTGCTAT+TGG - chr3_1:80938431-80938450 Msa0379640:intron 30.0%
!!! TGATTGAAGGTTTTGCTATT+GGG - chr3_1:80938432-80938451 Msa0379640:intron 30.0%
CTGATAAAATTTCACATTGC+AGG - chr3_1:80938464-80938483 Msa0379640:intron 30.0%
TTATGCTTGCATTTGTGAAT+TGG - chr3_1:80938625-80938644 Msa0379640:intron 30.0%
TCTAGATCTACAATTTGAAC+AGG - chr3_1:80938850-80938869 Msa0379640:CDS 30.0%
CAACTCCATCAGTATAATAT+TGG - chr3_1:80938953-80938972 Msa0379640:intron 30.0%
ACTACCCAATATTATACTGA+TGG + chr3_1:80938961-80938980 None:intergenic 30.0%
AATTTAATTGAGCTTCCGAA+AGG - chr3_1:80939069-80939088 Msa0379640:CDS 30.0%
! AATTTTCAAATCTGTCGCTA+TGG - chr3_1:80939187-80939206 Msa0379640:intron 30.0%
!! AAAAAACAAAAGTATCCCGA+GGG + chr3_1:80939264-80939283 None:intergenic 30.0%
! ACTCTTTTATGTTAGTTACG+AGG - chr3_1:80939382-80939401 Msa0379640:intron 30.0%
AACTATGCTTTAGTGATTAG+TGG - chr3_1:80939596-80939615 Msa0379640:intron 30.0%
AGACCTATTATTCTTGCAAA+TGG - chr3_1:80939676-80939695 Msa0379640:intron 30.0%
TCTCCATTTGCAAGAATAAT+AGG + chr3_1:80939682-80939701 None:intergenic 30.0%
! ACTTTTACTATGACAAGACA+AGG + chr3_1:80939724-80939743 None:intergenic 30.0%
ATTTCTGTAATTGTTAACCG+TGG + chr3_1:80939770-80939789 None:intergenic 30.0%
TTGCACTAGAATCGAATATA+CGG - chr3_1:80940043-80940062 Msa0379640:intron 30.0%
CATAATTGAACTTGAAGACT+CGG + chr3_1:80940397-80940416 None:intergenic 30.0%
! AGTCTTCAAGTTCAATTATG+AGG - chr3_1:80940397-80940416 Msa0379640:intron 30.0%
!!! AAATCGGTGTTTTAAAAACC+GGG + chr3_1:80940484-80940503 None:intergenic 30.0%
CTTGGTCATGAAAAAGTTTA+GGG + chr3_1:80940711-80940730 None:intergenic 30.0%
TCAATTGTCGTATAGATAAG+AGG - chr3_1:80940864-80940883 Msa0379640:intron 30.0%
ATAGATAAGAGGTTTCATGT+TGG - chr3_1:80940875-80940894 Msa0379640:intron 30.0%
TAGATAAGAGGTTTCATGTT+GGG - chr3_1:80940876-80940895 Msa0379640:intron 30.0%
AGCAACTTAAATAAAGAGTG+AGG - chr3_1:80940993-80941012 Msa0379640:intron 30.0%
GCAACTTAAATAAAGAGTGA+GGG - chr3_1:80940994-80941013 Msa0379640:intron 30.0%
! ATCATCTCTTATTTCTTGCT+AGG - chr3_1:80941159-80941178 Msa0379640:intron 30.0%
! TTTAAAACTCACAGAGATTC+AGG + chr3_1:80941284-80941303 None:intergenic 30.0%
!! TAAACATATTGGTTCTTGTG+TGG - chr3_1:80941300-80941319 Msa0379640:intron 30.0%
!! AAACATATTGGTTCTTGTGT+GGG - chr3_1:80941301-80941320 Msa0379640:intron 30.0%
!!! TATGGTTTTGATGAAATGCT+TGG - chr3_1:80941519-80941538 Msa0379640:CDS 30.0%
!!! AGATGTTGTATTTTGACCAT+AGG - chr3_1:80941933-80941952 Msa0379640:intron 30.0%
!!! AAGTTGTTTTTAGACAGGAA+AGG - chr3_1:80942327-80942346 Msa0379640:intron 30.0%
ATCTTAGATTCTTTAGTCAC+AGG - chr3_1:80942468-80942487 Msa0379640:intron 30.0%
! ACTGTGATACCTTATTTCAT+GGG + chr3_1:80942566-80942585 None:intergenic 30.0%
TGACAATCAAAACCATAAAC+AGG + chr3_1:80942732-80942751 None:intergenic 30.0%
AAATTTCCTGTAGTTCTTTG+TGG - chr3_1:80942788-80942807 Msa0379640:intron 30.0%
AAGGCTGTTCAAAAATAAAC+TGG + chr3_1:80942928-80942947 None:intergenic 30.0%
!!! TCAAGATGAAAAGGTGTTTT+AGG + chr3_1:80942994-80943013 None:intergenic 30.0%
TCATCTTGAATGAAATTTGC+AGG - chr3_1:80943005-80943024 Msa0379640:intron 30.0%
! AAAACTTTTATGGTGTGTTC+AGG - chr3_1:80943155-80943174 Msa0379640:intron 30.0%
! AAACTTTTATGGTGTGTTCA+GGG - chr3_1:80943156-80943175 Msa0379640:intron 30.0%
!!! TTTTCTCTGGTATTGACAAA+TGG - chr3_1:80943318-80943337 Msa0379640:intron 30.0%
!! TTTCTCTGGTATTGACAAAT+GGG - chr3_1:80943319-80943338 Msa0379640:intron 30.0%
GAAGAATGACAAATTACCAA+TGG + chr3_1:80943395-80943414 None:intergenic 30.0%
! TTTGAGTTTCTTCTTACATG+AGG - chr3_1:80943633-80943652 Msa0379640:intron 30.0%
ATGTCAATATCTGTATCTGA+AGG + chr3_1:80943723-80943742 None:intergenic 30.0%
GTACCAAGTAATTCATTATG+TGG - chr3_1:80943765-80943784 Msa0379640:intron 30.0%
CATGAAGAATATCCAACAAA+TGG + chr3_1:80943808-80943827 None:intergenic 30.0%
GGATATTCTTCATGTAGATA+TGG - chr3_1:80943814-80943833 Msa0379640:intron 30.0%
GCAATGATATTAGACAGTTA+TGG - chr3_1:80943852-80943871 Msa0379640:intron 30.0%
CAATATTGCAGAATAATGTC+GGG + chr3_1:80943956-80943975 None:intergenic 30.0%
TTATTCTGCAATATTGATGC+TGG - chr3_1:80943960-80943979 Msa0379640:CDS 30.0%
ATAATCTTCCTTGAGTGTTT+GGG - chr3_1:80944020-80944039 Msa0379640:CDS 30.0%
TGATGTATAATTGCTTGACT+TGG - chr3_1:80944058-80944077 Msa0379640:CDS 30.0%
CCCTAGTTTGAATATCAATT+TGG - chr3_1:80944159-80944178 Msa0379640:CDS 30.0%
ATTTCAACTCTCTTCTATGG+CGG - chr3_1:80936103-80936122 Msa0379640:three_prime_UTR 35.0%
!! TGATGATGGTGATGATACTA+TGG - chr3_1:80936199-80936218 Msa0379640:three_prime_UTR 35.0%
! GAACTCACTCTTTCTTTTGA+AGG - chr3_1:80936320-80936339 Msa0379640:three_prime_UTR 35.0%
CGTATACATACATGCAACAT+AGG + chr3_1:80936495-80936514 None:intergenic 35.0%
CAATCACTTAATCACACTGA+GGG + chr3_1:80936838-80936857 None:intergenic 35.0%
TCAATCACTTAATCACACTG+AGG + chr3_1:80936839-80936858 None:intergenic 35.0%
!!! TCTTATTTTCGAAGAATCGG+TGG - chr3_1:80936873-80936892 Msa0379640:intron 35.0%
ATGAAACAAAAGAAGGACGA+GGG + chr3_1:80937026-80937045 None:intergenic 35.0%
AATGAAACAAAAGAAGGACG+AGG + chr3_1:80937027-80937046 None:intergenic 35.0%
! AATCTCGATTTTACCTACCT+TGG - chr3_1:80937183-80937202 Msa0379640:intron 35.0%
! ATTGTCTTGCTTGGTAGTAT+AGG - chr3_1:80937660-80937679 Msa0379640:intron 35.0%
! TTGTCTTGCTTGGTAGTATA+GGG - chr3_1:80937661-80937680 Msa0379640:intron 35.0%
ATGGATCTCATTGTCATCAA+TGG - chr3_1:80937687-80937706 Msa0379640:intron 35.0%
AAGTTGACGTAAAAGCTCTA+TGG - chr3_1:80937735-80937754 Msa0379640:intron 35.0%
! CGTAAAAGCTCTATGGATTT+TGG - chr3_1:80937742-80937761 Msa0379640:intron 35.0%
! AAAAGCTCTATGGATTTTGG+TGG - chr3_1:80937745-80937764 Msa0379640:intron 35.0%
TATGAATAGGTGAATAGCTC+AGG - chr3_1:80937837-80937856 Msa0379640:intron 35.0%
!!! GATTGAAGGTTTTGCTATTG+GGG - chr3_1:80938433-80938452 Msa0379640:intron 35.0%
!!! CAAGCTGTTTTGCTGTTTTT+GGG - chr3_1:80938489-80938508 Msa0379640:intron 35.0%
GCTATTCTTCGTGAAAGATT+TGG + chr3_1:80938691-80938710 None:intergenic 35.0%
! ATCTTTCCTTGCGTTTTTCA+CGG + chr3_1:80938729-80938748 None:intergenic 35.0%
!!! CATCACTTTTTGGGGTAATA+GGG + chr3_1:80938823-80938842 None:intergenic 35.0%
!!! TCATCACTTTTTGGGGTAAT+AGG + chr3_1:80938824-80938843 None:intergenic 35.0%
AACAAACTACATTCGTTCAC+TGG + chr3_1:80939214-80939233 None:intergenic 35.0%
!! CAAAAAACAAAAGTATCCCG+AGG + chr3_1:80939265-80939284 None:intergenic 35.0%
! GCAATTTGCTTTAACCCATA+AGG - chr3_1:80939534-80939553 Msa0379640:intron 35.0%
!!! AAGGGTTTTTGAGACTTAAC+TGG - chr3_1:80939651-80939670 Msa0379640:intron 35.0%
!!! TTGTTAGTTTTGACTCTCCA+CGG - chr3_1:80939750-80939769 Msa0379640:intron 35.0%
GAATTTGACCTGTCAAAGTT+TGG - chr3_1:80939917-80939936 Msa0379640:intron 35.0%
GAGTTTAACCAAACTTTGAC+AGG + chr3_1:80939928-80939947 None:intergenic 35.0%
!! ATTGACTTGGTAAGGGTATT+TGG + chr3_1:80940455-80940474 None:intergenic 35.0%
! ATCCTTTTTGTAAGACTGCT+TGG + chr3_1:80940660-80940679 None:intergenic 35.0%
GCTTGGTCATGAAAAAGTTT+AGG + chr3_1:80940712-80940731 None:intergenic 35.0%
! ATCCTTTTTGTAAGACTGCT+TGG + chr3_1:80940660-80940679 None:intergenic 35.0%
TATTTCTTGCTAGGATGCAT+CGG - chr3_1:80941168-80941187 Msa0379640:intron 35.0%
!! GGTCATTTTGCTAACAAGTA+TGG - chr3_1:80941501-80941520 Msa0379640:intron 35.0%
! CACAATTATTTTCCAGTAGC+TGG - chr3_1:80941575-80941594 Msa0379640:CDS 35.0%
!!! AGACTGGGTGTTGTTTTTTT+GGG + chr3_1:80941639-80941658 None:intergenic 35.0%
!!! AAGACTGGGTGTTGTTTTTT+TGG + chr3_1:80941640-80941659 None:intergenic 35.0%
AAAAACAACACCCAGTCTTT+CGG - chr3_1:80941641-80941660 Msa0379640:intron 35.0%
ATTGTTTACAGCTGAGACAA+TGG - chr3_1:80941849-80941868 Msa0379640:intron 35.0%
!! ATTTTGACCATAGGACATGT+TGG - chr3_1:80941942-80941961 Msa0379640:intron 35.0%
AGAATGCAACAAACAAGTAC+AGG + chr3_1:80942009-80942028 None:intergenic 35.0%
TCTGCTTCTTAACTCTGATA+GGG - chr3_1:80942078-80942097 Msa0379640:intron 35.0%
ATCACATGTCCCATGAAATA+AGG - chr3_1:80942554-80942573 Msa0379640:intron 35.0%
! CACTGTGATACCTTATTTCA+TGG + chr3_1:80942567-80942586 None:intergenic 35.0%
! GAAATAAGGTATCACAGTGA+AGG - chr3_1:80942568-80942587 Msa0379640:intron 35.0%
!! TTTTGATTGTCACGAAGAGA+TGG - chr3_1:80942740-80942759 Msa0379640:intron 35.0%
AATCTTCCACAAAGAACTAC+AGG + chr3_1:80942797-80942816 None:intergenic 35.0%
!!! ATGAAAAGGTGTTTTAGGAC+TGG + chr3_1:80942989-80943008 None:intergenic 35.0%
TGACAAATGGGTATTTGTTC+AGG - chr3_1:80943331-80943350 Msa0379640:intron 35.0%
TTTGCCGATGAAACTTGAAA+TGG - chr3_1:80943543-80943562 Msa0379640:intron 35.0%
!! AGCTCCATTTCAAGTTTCAT+CGG + chr3_1:80943550-80943569 None:intergenic 35.0%
GATACAGATATTGACATTCC+TGG - chr3_1:80943726-80943745 Msa0379640:intron 35.0%
TCCTGGAAACTTTGATTAGA+AGG - chr3_1:80943743-80943762 Msa0379640:intron 35.0%
ACCTTCTAATCAAAGTTTCC+AGG + chr3_1:80943747-80943766 None:intergenic 35.0%
CACCCACATAATGAATTACT+TGG + chr3_1:80943771-80943790 None:intergenic 35.0%
TTAGACAACAGTCCATTTGT+TGG - chr3_1:80943793-80943812 Msa0379640:intron 35.0%
TTAGACAGTTATGGGAAAGT+AGG - chr3_1:80943861-80943880 Msa0379640:intron 35.0%
TATGTAACAGCGAAATGAAG+TGG - chr3_1:80943893-80943912 Msa0379640:intron 35.0%
ATGAAGTGGTAATCCTATCA+AGG - chr3_1:80943907-80943926 Msa0379640:intron 35.0%
TGAAGTGGTAATCCTATCAA+GGG - chr3_1:80943908-80943927 Msa0379640:intron 35.0%
GATAATCTTCCTTGAGTGTT+TGG - chr3_1:80944019-80944038 Msa0379640:CDS 35.0%
! TCTCTAAATTTCAGGTAGCA+AGG + chr3_1:80944105-80944124 None:intergenic 35.0%
TCAATAGCTGGAATTGTTGC+AGG + chr3_1:80936152-80936171 None:intergenic 40.0%
GATGAGGACTATACTGATGA+TGG - chr3_1:80936185-80936204 Msa0379640:three_prime_UTR 40.0%
GGTAATTCAGTGAACGTTGA+AGG - chr3_1:80936245-80936264 Msa0379640:three_prime_UTR 40.0%
TACCTTCTGATGTGTGACAT+CGG + chr3_1:80936363-80936382 None:intergenic 40.0%
! CGATTTTACCTACCTTGGTT+AGG - chr3_1:80937188-80937207 Msa0379640:intron 40.0%
! GTGTAATAATGGGACTGTTG+TGG - chr3_1:80937281-80937300 Msa0379640:intron 40.0%
GTCCATGTCCATATCATATC+TGG - chr3_1:80937597-80937616 Msa0379640:intron 40.0%
CACCAGATATGATATGGACA+TGG + chr3_1:80937602-80937621 None:intergenic 40.0%
! GCTTGGTAGTATAGGGATTA+TGG - chr3_1:80937668-80937687 Msa0379640:intron 40.0%
CATTGTCATCAATGGCTGTT+TGG - chr3_1:80937695-80937714 Msa0379640:intron 40.0%
GGCTTACGAACGATATGAAT+AGG - chr3_1:80937824-80937843 Msa0379640:intron 40.0%
ATACTTTGACCGTTGTGTCA+AGG + chr3_1:80938157-80938176 None:intergenic 40.0%
GAAGTCACAGATTGAAGTCA+TGG - chr3_1:80938189-80938208 Msa0379640:CDS 40.0%
CCTTACTTTGCAATTGCAAG+AGG + chr3_1:80938222-80938241 None:intergenic 40.0%
CCTCTTGCAATTGCAAAGTA+AGG - chr3_1:80938219-80938238 Msa0379640:intron 40.0%
TTACTTCTTGACCTGGCAAA+AGG - chr3_1:80938405-80938424 Msa0379640:CDS 40.0%
! TCAATCATTGTCCTTTTGCC+AGG + chr3_1:80938419-80938438 None:intergenic 40.0%
GGCAAAAGGACAATGATTGA+AGG - chr3_1:80938419-80938438 Msa0379640:CDS 40.0%
!!! GCAAGCTGTTTTGCTGTTTT+TGG - chr3_1:80938488-80938507 Msa0379640:intron 40.0%
! TGCCATTTGATCAGAGTAAC+AGG - chr3_1:80938550-80938569 Msa0379640:intron 40.0%
GCCATTTGATCAGAGTAACA+GGG - chr3_1:80938551-80938570 Msa0379640:intron 40.0%
ACCCTGTTACTCTGATCAAA+TGG + chr3_1:80938555-80938574 None:intergenic 40.0%
! AATTGGTTCCTGCAATCTCT+AGG - chr3_1:80938642-80938661 Msa0379640:intron 40.0%
! ATTGGTTCCTGCAATCTCTA+GGG - chr3_1:80938643-80938662 Msa0379640:intron 40.0%
TAGATACTCCGTGAGAAAAG+AGG - chr3_1:80938765-80938784 Msa0379640:intron 40.0%
TACTGATGGAGTTGACATCT+TGG + chr3_1:80938947-80938966 None:intergenic 40.0%
ACCTTGTTGGCCCAAAATTA+TGG - chr3_1:80939135-80939154 Msa0379640:intron 40.0%
! ACCATAATTTTGGGCCAACA+AGG + chr3_1:80939139-80939158 None:intergenic 40.0%
! AAAATCGCACTGGTAAAACC+AGG - chr3_1:80939850-80939869 Msa0379640:intron 40.0%
GCCTAATATTGTGATTGGAC+CGG + chr3_1:80939890-80939909 None:intergenic 40.0%
GAGCAGCCTAATATTGTGAT+TGG + chr3_1:80939895-80939914 None:intergenic 40.0%
TGATAACATCAACAAGCAGC+AGG + chr3_1:80940105-80940124 None:intergenic 40.0%
!! TTTTTAGCGACAAAGTCAGC+TGG - chr3_1:80940319-80940338 Msa0379640:intron 40.0%
AGGTTAATCCAGTGATCAAG+TGG - chr3_1:80940417-80940436 Msa0379640:intron 40.0%
!! TGGTAAGGGTATTTGGTCAT+TGG + chr3_1:80940448-80940467 None:intergenic 40.0%
!! GTTGGTGATTGACTTGGTAA+GGG + chr3_1:80940462-80940481 None:intergenic 40.0%
ACCTGTGGTAAGACTTGATT+GGG + chr3_1:80940553-80940572 None:intergenic 40.0%
TATATAGCCAATCTCACCTG+TGG + chr3_1:80940568-80940587 None:intergenic 40.0%
GTCCAAGCAGTCTTACAAAA+AGG - chr3_1:80940655-80940674 Msa0379640:intron 40.0%
GACCAAGCAGTCTTACAAAA+AGG - chr3_1:80940724-80940743 Msa0379640:intron 40.0%
ATTTCTTGCTAGGATGCATC+GGG - chr3_1:80941169-80941188 Msa0379640:intron 40.0%
AATTCCAACTAGAGGAACCA+GGG + chr3_1:80941226-80941245 None:intergenic 40.0%
TCTAGTTGGAATTCAGCACA+GGG - chr3_1:80941233-80941252 Msa0379640:intron 40.0%
ACTCACAGAGATTCAGGATT+AGG + chr3_1:80941278-80941297 None:intergenic 40.0%
ACAATGTTGACATCTACGTC+TGG + chr3_1:80941385-80941404 None:intergenic 40.0%
AGACGTAGATGTCAACATTG+TGG - chr3_1:80941384-80941403 Msa0379640:intron 40.0%
CATGCATTGCACAAAGTTCT+TGG + chr3_1:80941456-80941475 None:intergenic 40.0%
AGAACTTTGTGCAATGCATG+CGG - chr3_1:80941456-80941475 Msa0379640:intron 40.0%
AGCAAAATGACCAACCTTGT+TGG + chr3_1:80941493-80941512 None:intergenic 40.0%
! TATTTTCCAGTAGCTGGAGT+TGG - chr3_1:80941581-80941600 Msa0379640:CDS 40.0%
GATGACAAATCCGAAAGACT+GGG + chr3_1:80941654-80941673 None:intergenic 40.0%
AGATGACAAATCCGAAAGAC+TGG + chr3_1:80941655-80941674 None:intergenic 40.0%
ACAACATCTAATCCACCACT+GGG + chr3_1:80941922-80941941 None:intergenic 40.0%
TACAACATCTAATCCACCAC+TGG + chr3_1:80941923-80941942 None:intergenic 40.0%
GATGAAACCAACATGTCCTA+TGG + chr3_1:80941952-80941971 None:intergenic 40.0%
GTCTGCTTCTTAACTCTGAT+AGG - chr3_1:80942077-80942096 Msa0379640:intron 40.0%
CTGCTTCTTAACTCTGATAG+GGG - chr3_1:80942079-80942098 Msa0379640:intron 40.0%
ACACTCAGAGATCTCAGTAA+GGG - chr3_1:80942102-80942121 Msa0379640:intron 40.0%
AGCCAATTGCAAATGCTAAG+TGG - chr3_1:80942209-80942228 Msa0379640:intron 40.0%
GCCAATTGCAAATGCTAAGT+GGG - chr3_1:80942210-80942229 Msa0379640:intron 40.0%
TCCCACTTAGCATTTGCAAT+TGG + chr3_1:80942214-80942233 None:intergenic 40.0%
TTTGAACAGCCTTACCTTTG+TGG - chr3_1:80942935-80942954 Msa0379640:intron 40.0%
TGAAAGAACTTGAGCCACAA+AGG + chr3_1:80942952-80942971 None:intergenic 40.0%
TCAAGCCAACTGTTCTTGAA+GGG - chr3_1:80943043-80943062 Msa0379640:intron 40.0%
AATTCCCCTTCAAGAACAGT+TGG + chr3_1:80943051-80943070 None:intergenic 40.0%
AATGATCATGCATCAAACCC+TGG - chr3_1:80943222-80943241 Msa0379640:intron 40.0%
!! CCAATGGCAGTGTTTTTGTT+AGG + chr3_1:80943379-80943398 None:intergenic 40.0%
CCTAACAAAAACACTGCCAT+TGG - chr3_1:80943376-80943395 Msa0379640:intron 40.0%
! TTCGGAAAATGATGATGAGC+AGG - chr3_1:80943412-80943431 Msa0379640:intron 40.0%
TTCATCGGCAAAGTTCAAGT+GGG + chr3_1:80943535-80943554 None:intergenic 40.0%
TTTCATCGGCAAAGTTCAAG+TGG + chr3_1:80943536-80943555 None:intergenic 40.0%
TCTTGCGTTTACAAGTGTAC+TGG + chr3_1:80943574-80943593 None:intergenic 40.0%
ATGAGGCTTATATGACCTAC+AGG - chr3_1:80943650-80943669 Msa0379640:intron 40.0%
CTTTCTAATCCTTCAGATGC+AGG - chr3_1:80943687-80943706 Msa0379640:intron 40.0%
TTAGACATTCCTGCATCTGA+AGG + chr3_1:80943699-80943718 None:intergenic 40.0%
ATTGTTGCAGGATCCTCAGA+TGG + chr3_1:80936140-80936159 None:intergenic 45.0%
!! CACTCTTTCTTTTGAAGGCG+AGG - chr3_1:80936325-80936344 Msa0379640:three_prime_UTR 45.0%
ACCTTCTGATGTGTGACATC+GGG + chr3_1:80936362-80936381 None:intergenic 45.0%
TTAGATTGCTGTCGGGATCA+TGG - chr3_1:80936758-80936777 Msa0379640:intron 45.0%
ATGGGACTGTTGTGGTGTAA+AGG - chr3_1:80937289-80937308 Msa0379640:intron 45.0%
TCTTGGGAACCTTGACACAA+CGG - chr3_1:80938145-80938164 Msa0379640:intron 45.0%
!!! GCTGTTTTGCTGTTTTTGGG+AGG - chr3_1:80938492-80938511 Msa0379640:intron 45.0%
!!! TTGCTGTTTTTGGGAGGAAG+TGG - chr3_1:80938498-80938517 Msa0379640:intron 45.0%
TCAAATGGCAGTTCAGCTGT+GGG + chr3_1:80938540-80938559 None:intergenic 45.0%
ATCAAATGGCAGTTCAGCTG+TGG + chr3_1:80938541-80938560 None:intergenic 45.0%
TTCACGAAGAATAGCCTCCT+TGG - chr3_1:80938696-80938715 Msa0379640:intron 45.0%
! TTTTTCACGGTACCTGACCA+AGG + chr3_1:80938716-80938735 None:intergenic 45.0%
ATACTCCGTGAGAAAAGAGG+TGG - chr3_1:80938768-80938787 Msa0379640:intron 45.0%
! TTCTGCCACCTCTTTTCTCA+CGG + chr3_1:80938776-80938795 None:intergenic 45.0%
TGAGAAAAGAGGTGGCAGAA+AGG - chr3_1:80938776-80938795 Msa0379640:CDS 45.0%
TATCCCGAGGGAATCAAACA+CGG + chr3_1:80939252-80939271 None:intergenic 45.0%
GCCGGTCCAATCACAATATT+AGG - chr3_1:80939886-80939905 Msa0379640:intron 45.0%
AGTGGCAGAAAACTGCATTG+TGG + chr3_1:80940079-80940098 None:intergenic 45.0%
! CAAAGTCAGCTGGCTTAATC+CGG - chr3_1:80940329-80940348 Msa0379640:intron 45.0%
TGGTTGAACCACTTGATCAC+TGG + chr3_1:80940428-80940447 None:intergenic 45.0%
!! GGTTGGTGATTGACTTGGTA+AGG + chr3_1:80940463-80940482 None:intergenic 45.0%
TACCAAGTCAATCACCAACC+CGG - chr3_1:80940463-80940482 Msa0379640:intron 45.0%
!!! CGGTGTTTTAAAAACCGGGT+TGG + chr3_1:80940480-80940499 None:intergenic 45.0%
ACCCAATCAAGTCTTACCAC+AGG - chr3_1:80940549-80940568 Msa0379640:intron 45.0%
CACCTGTGGTAAGACTTGAT+TGG + chr3_1:80940554-80940573 None:intergenic 45.0%
AGTCTTACCACAGGTGAGAT+TGG - chr3_1:80940558-80940577 Msa0379640:intron 45.0%
GAATTCCAACTAGAGGAACC+AGG + chr3_1:80941227-80941246 None:intergenic 45.0%
CTGTGCTGAATTCCAACTAG+AGG + chr3_1:80941234-80941253 None:intergenic 45.0%
CTCTAGTTGGAATTCAGCAC+AGG - chr3_1:80941232-80941251 Msa0379640:intron 45.0%
GGGATTAACTATAAAGCCCC+AGG + chr3_1:80941893-80941912 None:intergenic 45.0%
TAATCCACCACTGGGTGTAA+GGG + chr3_1:80941914-80941933 None:intergenic 45.0%
GACACTCAGAGATCTCAGTA+AGG - chr3_1:80942101-80942120 Msa0379640:intron 45.0%
GAACTTGAGCCACAAAGGTA+AGG + chr3_1:80942947-80942966 None:intergenic 45.0%
! TTGGCTTGACATCAACAGGA+GGG + chr3_1:80943032-80943051 None:intergenic 45.0%
!! ACAGTTGGCTTGACATCAAC+AGG + chr3_1:80943036-80943055 None:intergenic 45.0%
GTCAAGCCAACTGTTCTTGA+AGG - chr3_1:80943042-80943061 Msa0379640:intron 45.0%
CAAGCCAACTGTTCTTGAAG+GGG - chr3_1:80943044-80943063 Msa0379640:intron 45.0%
GAAGAACCTTCCAAGACTGT+TGG - chr3_1:80943186-80943205 Msa0379640:intron 45.0%
CTACAACTACCTCATCACCA+GGG + chr3_1:80943242-80943261 None:intergenic 45.0%
ACTACAACTACCTCATCACC+AGG + chr3_1:80943243-80943262 None:intergenic 45.0%
! GGGTTCAGACATCTTTTCTC+TGG - chr3_1:80943305-80943324 Msa0379640:intron 45.0%
CACAGTTCACACAACTATGC+TGG - chr3_1:80943486-80943505 Msa0379640:intron 45.0%
TCATCGGCAAAGTTCAAGTG+GGG + chr3_1:80943534-80943553 None:intergenic 45.0%
AGGATTAGAAAGCTCGACCA+CGG + chr3_1:80943679-80943698 None:intergenic 45.0%
AGTGGTAATCCTATCAAGGG+TGG - chr3_1:80943911-80943930 Msa0379640:intron 45.0%
AACACGATCCCAAACACTCA+AGG + chr3_1:80944031-80944050 None:intergenic 45.0%
!! ACTTTGGTGATGCCATCCAA+AGG - chr3_1:80944129-80944148 Msa0379640:CDS 45.0%
!! TTGGTGGTGTGCTGAAGTTT+AGG - chr3_1:80944178-80944197 Msa0379640:exon 45.0%
!! GTATATTTATAAATAAAAAA+AGG + chr3_1:80940221-80940240 None:intergenic 5.0%
!!! AAAAAATTGTTTTAATATTA+AGG + chr3_1:80942878-80942897 None:intergenic 5.0%
! GAGTCTCGTTCTGAGTTCCT+TGG - chr3_1:80936047-80936066 Msa0379640:three_prime_UTR 50.0%
GGAACAACCTCTTCCATCTG+AGG - chr3_1:80936124-80936143 Msa0379640:three_prime_UTR 50.0%
TCGTCGTCGTCATCAATAGC+TGG + chr3_1:80936164-80936183 None:intergenic 50.0%
CCTTCTGATGTGTGACATCG+GGG + chr3_1:80936361-80936380 None:intergenic 50.0%
AAGTACCCGCGAGTAATCGA+TGG - chr3_1:80936634-80936653 Msa0379640:intron 50.0%
AGTACCCGCGAGTAATCGAT+GGG - chr3_1:80936635-80936654 Msa0379640:intron 50.0%
! GATACCCATCGATTACTCGC+GGG + chr3_1:80936642-80936661 None:intergenic 50.0%
! CGATACCCATCGATTACTCG+CGG + chr3_1:80936643-80936662 None:intergenic 50.0%
CGCGAGTAATCGATGGGTAT+CGG - chr3_1:80936641-80936660 Msa0379640:intron 50.0%
GCGAGTAATCGATGGGTATC+GGG - chr3_1:80936642-80936661 Msa0379640:intron 50.0%
!! TAATCGATGGGTATCGGGTG+CGG - chr3_1:80936647-80936666 Msa0379640:intron 50.0%
!! TTCCTGCAATCTCTAGGGCT+TGG - chr3_1:80938648-80938667 Msa0379640:intron 50.0%
!! TCCTGCAATCTCTAGGGCTT+GGG - chr3_1:80938649-80938668 Msa0379640:intron 50.0%
GAAGAATAGCCTCCTTGGTC+AGG - chr3_1:80938701-80938720 Msa0379640:intron 50.0%
! CAGGTACCGTGAAAAACGCA+AGG - chr3_1:80938720-80938739 Msa0379640:intron 50.0%
AGCTTCCGAAAGGAAGTTCG+TGG - chr3_1:80939079-80939098 Msa0379640:CDS 50.0%
GCTTCCGAAAGGAAGTTCGT+GGG - chr3_1:80939080-80939099 Msa0379640:CDS 50.0%
CTTCCGAAAGGAAGTTCGTG+GGG - chr3_1:80939081-80939100 Msa0379640:CDS 50.0%
! TTTTGGGCCAACAAGGTAGC+AGG + chr3_1:80939132-80939151 None:intergenic 50.0%
ATCCCGAGGGAATCAAACAC+GGG + chr3_1:80939251-80939270 None:intergenic 50.0%
AGCGCGCACAATCAAATTGG+AGG + chr3_1:80939507-80939526 None:intergenic 50.0%
CCAAGCGCGCACAATCAAAT+TGG + chr3_1:80939510-80939529 None:intergenic 50.0%
CCAATTTGATTGTGCGCGCT+TGG - chr3_1:80939507-80939526 Msa0379640:intron 50.0%
! GCACTGGTAAAACCAGGAAC+CGG - chr3_1:80939856-80939875 Msa0379640:intron 50.0%
CTCATCAAACTCGCGTAACC+CGG - chr3_1:80939945-80939964 Msa0379640:intron 50.0%
TATGACCACACCAGTTACGC+CGG + chr3_1:80939967-80939986 None:intergenic 50.0%
! GAAGACTCGGTTTCATCACC+CGG + chr3_1:80940384-80940403 None:intergenic 50.0%
!! AACCGGGTTGGTGATTGACT+TGG + chr3_1:80940468-80940487 None:intergenic 50.0%
TGCTAGGATGCATCGGGAAA+AGG - chr3_1:80941175-80941194 Msa0379640:intron 50.0%
GCTAGGATGCATCGGGAAAA+GGG - chr3_1:80941176-80941195 Msa0379640:intron 50.0%
CTAGGATGCATCGGGAAAAG+GGG - chr3_1:80941177-80941196 Msa0379640:intron 50.0%
GAACCAGGGCTTTGCTTCAA+GGG + chr3_1:80941212-80941231 None:intergenic 50.0%
AAAGCCCTGGTTCCTCTAGT+TGG - chr3_1:80941219-80941238 Msa0379640:intron 50.0%
AATACTCCTGCAATGCGTCG+CGG - chr3_1:80941420-80941439 Msa0379640:intron 50.0%
CACAAAGTTCTTGGTCCAGC+TGG + chr3_1:80941447-80941466 None:intergenic 50.0%
GTTAATCCCCTTACACCCAG+TGG - chr3_1:80941904-80941923 Msa0379640:intron 50.0%
AATCCACCACTGGGTGTAAG+GGG + chr3_1:80941913-80941932 None:intergenic 50.0%
CTAATCCACCACTGGGTGTA+AGG + chr3_1:80941915-80941934 None:intergenic 50.0%
CTCAGAGATCTCAGTAAGGG+TGG - chr3_1:80942105-80942124 Msa0379640:intron 50.0%
TCCTGTTGAGCAAAGTCGTC+TGG - chr3_1:80942137-80942156 Msa0379640:intron 50.0%
ACCAGACGACTTTGCTCAAC+AGG + chr3_1:80942141-80942160 None:intergenic 50.0%
!! GTTGGCTTGACATCAACAGG+AGG + chr3_1:80943033-80943052 None:intergenic 50.0%
ACCTTCCAAGACTGTTGGTG+CGG - chr3_1:80943191-80943210 Msa0379640:intron 50.0%
! TGCATCAAACCCTGGTGATG+AGG - chr3_1:80943230-80943249 Msa0379640:intron 50.0%
CAAGTGGGGCTACTTGAACT+CGG + chr3_1:80943520-80943539 None:intergenic 50.0%
ATATGACCTACAGGAACCCG+TGG - chr3_1:80943659-80943678 Msa0379640:intron 50.0%
GGATTAGAAAGCTCGACCAC+GGG + chr3_1:80943678-80943697 None:intergenic 50.0%
AGAGCTTCTCCACCCTTGAT+AGG + chr3_1:80943923-80943942 None:intergenic 50.0%
! TGGTGATGCCATCCAAAGGA+TGG - chr3_1:80944133-80944152 Msa0379640:CDS 50.0%
AAACTAGGGGGTCCATCCTT+TGG + chr3_1:80944148-80944167 None:intergenic 50.0%
GAAGTTTAGGCTTGTGCTGC+TGG - chr3_1:80944191-80944210 Msa0379640:five_prime_UTR 50.0%
! TTGTGCTGCTGGACTCTTAG+TGG - chr3_1:80944202-80944221 Msa0379640:five_prime_UTR 50.0%
! TGTGCTGCTGGACTCTTAGT+GGG - chr3_1:80944203-80944222 Msa0379640:five_prime_UTR 50.0%
!! GGACTCTTAGTGGGAGCATT+TGG - chr3_1:80944212-80944231 Msa0379640:five_prime_UTR 50.0%
GCAGGATCCTCAGATGGAAG+AGG + chr3_1:80936134-80936153 None:intergenic 55.0%
! TGATGACGACGACGACGATG+AGG - chr3_1:80936169-80936188 Msa0379640:three_prime_UTR 55.0%
GCTGCAGCTGCAACACGTAT+TGG - chr3_1:80936296-80936315 Msa0379640:three_prime_UTR 55.0%
CCCCGATGTCACACATCAGA+AGG - chr3_1:80936358-80936377 Msa0379640:three_prime_UTR 55.0%
!! AATCGATGGGTATCGGGTGC+GGG - chr3_1:80936648-80936667 Msa0379640:intron 55.0%
GATTGCTGTCGGGATCATGG+TGG - chr3_1:80936761-80936780 Msa0379640:intron 55.0%
!! TGCAATCTCTAGGGCTTGGG+CGG - chr3_1:80938652-80938671 Msa0379640:intron 55.0%
TTCACGGTACCTGACCAAGG+AGG + chr3_1:80938713-80938732 None:intergenic 55.0%
CGTCCCCACGAACTTCCTTT+CGG + chr3_1:80939087-80939106 None:intergenic 55.0%
CTGACCACCTGCTACCTTGT+TGG - chr3_1:80939122-80939141 Msa0379640:intron 55.0%
GCTCCCGTGTTTGATTCCCT+CGG - chr3_1:80939245-80939264 Msa0379640:intron 55.0%
CTCCCGTGTTTGATTCCCTC+GGG - chr3_1:80939246-80939265 Msa0379640:intron 55.0%
AAAACCAGGAACCGGACGCA+TGG - chr3_1:80939864-80939883 Msa0379640:intron 55.0%
ATGACCACACCAGTTACGCC+GGG + chr3_1:80939966-80939985 None:intergenic 55.0%
TCAACAAGCAGCAGGCTCAG+TGG + chr3_1:80940097-80940116 None:intergenic 55.0%
GGAACCAGGGCTTTGCTTCA+AGG + chr3_1:80941213-80941232 None:intergenic 55.0%
TGGAATTCAGCACAGGGTGC+TGG - chr3_1:80941239-80941258 Msa0379640:intron 55.0%
CAATGCATGCGGCCTCATGT+GGG - chr3_1:80941467-80941486 Msa0379640:intron 55.0%
CAACCTTGTTGGCCCACATG+AGG + chr3_1:80941482-80941501 None:intergenic 55.0%
CTCATGTGGGCCAACAAGGT+TGG - chr3_1:80941480-80941499 Msa0379640:intron 55.0%
ACAGCTGAGACAATGGTCCC+TGG - chr3_1:80941856-80941875 Msa0379640:intron 55.0%
TGAGACAATGGTCCCTGGCA+TGG - chr3_1:80941861-80941880 Msa0379640:intron 55.0%
GAGACAATGGTCCCTGGCAT+GGG - chr3_1:80941862-80941881 Msa0379640:intron 55.0%
AATCCCCTTACACCCAGTGG+TGG - chr3_1:80941907-80941926 Msa0379640:intron 55.0%
TCCGCACCAACAGTCTTGGA+AGG + chr3_1:80943195-80943214 None:intergenic 55.0%
TCCAAGACTGTTGGTGCGGA+AGG - chr3_1:80943195-80943214 Msa0379640:intron 55.0%
ACCTTCCGCACCAACAGTCT+TGG + chr3_1:80943199-80943218 None:intergenic 55.0%
TGGGGCTACTTGAACTCGGA+TGG + chr3_1:80943516-80943535 None:intergenic 55.0%
TAGGGGGTCCATCCTTTGGA+TGG + chr3_1:80944144-80944163 None:intergenic 55.0%
GCAGCTGCAGTTGCAGTTGC+AGG + chr3_1:80936281-80936300 None:intergenic 60.0%
!! ATGGGTATCGGGTGCGGGTA+CGG - chr3_1:80936653-80936672 Msa0379640:intron 60.0%
AGTTCAGCTGTGGGCATGCC+TGG + chr3_1:80938531-80938550 None:intergenic 60.0%
GCCCAAGCCCTAGAGATTGC+AGG + chr3_1:80938653-80938672 None:intergenic 60.0%
AAGTTCGTGGGGACGCACAC+AGG - chr3_1:80939092-80939111 Msa0379640:CDS 60.0%
AGTTCGTGGGGACGCACACA+GGG - chr3_1:80939093-80939112 Msa0379640:CDS 60.0%
TGGGCCAACAAGGTAGCAGG+TGG + chr3_1:80939129-80939148 None:intergenic 60.0%
GTAACCCGGCGTAACTGGTG+TGG - chr3_1:80939959-80939978 Msa0379640:intron 60.0%
GCACCCTTGAAGCAAAGCCC+TGG - chr3_1:80941206-80941225 Msa0379640:intron 60.0%
!! GCACAGGGTGCTGGTCAAGA+TGG - chr3_1:80941248-80941267 Msa0379640:intron 60.0%
GCAATGCATGCGGCCTCATG+TGG - chr3_1:80941466-80941485 Msa0379640:intron 60.0%
GTGCAGCCAACTCCAGCTAC+TGG + chr3_1:80941590-80941609 None:intergenic 60.0%
!! TGGGTATCGGGTGCGGGTAC+GGG - chr3_1:80936654-80936673 Msa0379640:intron 65.0%
GATTGGACCGGCCATGCGTC+CGG + chr3_1:80939878-80939897 None:intergenic 65.0%
CTCGCGTAACCCGGCGTAAC+TGG - chr3_1:80939954-80939973 Msa0379640:intron 65.0%
CGGCCTCATGTGGGCCAACA+AGG - chr3_1:80941476-80941495 Msa0379640:intron 65.0%
GCTCGACCACGGGTTCCTGT+AGG + chr3_1:80943668-80943687 None:intergenic 65.0%
GGAGGAAGTGGTGCGCAGCC+AGG - chr3_1:80938510-80938529 Msa0379640:intron 70.0%
CCAGGAACCGGACGCATGGC+CGG - chr3_1:80939868-80939887 Msa0379640:intron 70.0%
GCTGGTCCGCGACGCATTGC+AGG + chr3_1:80941429-80941448 None:intergenic 70.0%
GCAATGCGTCGCGGACCAGC+TGG - chr3_1:80941429-80941448 Msa0379640:intron 70.0%
TCCCTGGCATGGGAGCTGCC+TGG - chr3_1:80941872-80941891 Msa0379640:intron 70.0%
CCCAGGCAGCTCCCATGCCA+GGG + chr3_1:80941876-80941895 None:intergenic 70.0%
CCCTGGCATGGGAGCTGCCT+GGG - chr3_1:80941873-80941892 Msa0379640:intron 70.0%
CCTGGCATGGGAGCTGCCTG+GGG - chr3_1:80941874-80941893 Msa0379640:intron 70.0%
CCGGCCATGCGTCCGGTTCC+TGG + chr3_1:80939871-80939890 None:intergenic 75.0%
CCCCAGGCAGCTCCCATGCC+AGG + chr3_1:80941877-80941896 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 80935961 80944348 80935961 ID=Msa0379640;Name=Msa0379640
chr3_1 mRNA 80935961 80944348 80935961 ID=Msa0379640-mRNA-1;Parent=Msa0379640;Name=Msa0379640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=158|0.8|0.81|0.90|1|1|11|587|399
chr3_1 exon 80935961 80936637 80935961 ID=Msa0379640-mRNA-1:exon:20277;Parent=Msa0379640-mRNA-1
chr3_1 exon 80936876 80936956 80936876 ID=Msa0379640-mRNA-1:exon:20276;Parent=Msa0379640-mRNA-1
chr3_1 exon 80937058 80937132 80937058 ID=Msa0379640-mRNA-1:exon:20275;Parent=Msa0379640-mRNA-1
chr3_1 exon 80937217 80937282 80937217 ID=Msa0379640-mRNA-1:exon:20274;Parent=Msa0379640-mRNA-1
chr3_1 exon 80938151 80938210 80938151 ID=Msa0379640-mRNA-1:exon:20273;Parent=Msa0379640-mRNA-1
chr3_1 exon 80938370 80938449 80938370 ID=Msa0379640-mRNA-1:exon:20272;Parent=Msa0379640-mRNA-1
chr3_1 exon 80938769 80938923 80938769 ID=Msa0379640-mRNA-1:exon:20271;Parent=Msa0379640-mRNA-1
chr3_1 exon 80939018 80939128 80939018 ID=Msa0379640-mRNA-1:exon:20270;Parent=Msa0379640-mRNA-1
chr3_1 exon 80941512 80941645 80941512 ID=Msa0379640-mRNA-1:exon:20269;Parent=Msa0379640-mRNA-1
chr3_1 exon 80941737 80941823 80941737 ID=Msa0379640-mRNA-1:exon:20268;Parent=Msa0379640-mRNA-1
chr3_1 exon 80943930 80944348 80943930 ID=Msa0379640-mRNA-1:exon:20267;Parent=Msa0379640-mRNA-1
chr3_1 five_prime_UTR 80944191 80944348 80944191 ID=Msa0379640-mRNA-1:five_prime_utr;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80943930 80944190 80943930 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80941737 80941823 80941737 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80941512 80941645 80941512 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80939018 80939128 80939018 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80938769 80938923 80938769 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80938370 80938449 80938370 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80938151 80938210 80938151 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80937217 80937282 80937217 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80937058 80937132 80937058 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80936876 80936956 80936876 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 CDS 80936548 80936637 80936548 ID=Msa0379640-mRNA-1:cds;Parent=Msa0379640-mRNA-1
chr3_1 three_prime_UTR 80935961 80936547 80935961 ID=Msa0379640-mRNA-1:three_prime_utr;Parent=Msa0379640-mRNA-1
Gene Sequence

>Msa0379640

ATGGCGGAACAACCTCTTCCATCTGAGGATCCTGCAACAATTCCAGCTATTGATGACGACGACGACGATGAGGACTATACTGATGATGGTGATGATACTATGGATGAATTGGATGAAGAAACAAATGGTAATTCAGTGAACGTTGAAGGCACTTCAATTCCTGCAACTGCAACTGCAGCTGCAGCTGCAACACGTATTGGTGAACTCACTCTTTCTTTTGAAGGCGAGGTTTATGTCTTCCCCGATGTCACACATCAGAAGGTGCAAGCTGTTTTGCTGTTTTTGGGAGGAAGTGGTGCGCAGCCAGGCATGCCCACAGCTGAACTGCCATTTGATCAGAGTAACAGGGGCTTGGGCGGTATTGCAAAGATTCCAAATCTTTCACGAAGAATAGCCTCCTTGGTCAGGTACCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGATACTCCGTGAGAAAAGAGGTGGCAGAAAGGATGCATCGGGAAAAGGGGCAGTTTGCACCCTTGAAGCAAAGCCCTGGTTCCTCTAGTTGGAATTCAGCACAGGGTGCTGGTCAAGATGGCAGTCCTAATCCTGAATCTCTACGTAGATGTCAACATTGTGGAGTCAATGAAAATAATACTCCTGCAATGCGTCGCGGACCAGCTGGACCAAGAACTTTGTGCAATGCATGCGGCCTCATGTGGGCCAACAAGGTTGGTCATTTTGCTAACAAGTATGGTTTTGATGAAATGCTTGCTGAGACAATGGTCCCTGGCATGGGAGCTGCCTGGGGCTTTATAGTTAATCCCCTTACACCCAGTGGTGGATTAGATGTTGGGACACTCAGAGATCTCAGTAAGGGTGGAAGAAATCTTCCTGTTGAGCAAAGTCGTCTGGACCCTCCTGTTGATGTCAAGCCAACTGTTCTTGAAGGGGAATTCTCTGTCATTGAAAATGAACAAGGTATTTCTGAAGAACCTTCCAAGACTGTTGGTGCGGAAGGTTTGAATGATCATGCATCAAACCCTGGTGATGAGGAATTGTCTGAATCTGCAGAACACCTAACAAAAACACTGCCATTGGTAATTTGTCATTCTTCGGAAAATGATGATGAGCAGGAACCCGTGGTCGAGCTTTCTAATCCTTCAGATGCAGGAATGTCTAATCCTTCAGATACAGATATTGACATTCCTGGAAACTTTGATTAG

Protein sequence

>Msa0379640

MAEQPLPSEDPATIPAIDDDDDDEDYTDDGDDTMDELDEETNGNSVNVEGTSIPATATAAAAATRIGELTLSFEGEVYVFPDVTHQKVQAVLLFLGGSGAQPGMPTAELPFDQSNRGLGGIAKIPNLSRRIASLVRYREKRKERCFDKKIRYSVRKEVAERMHREKGQFAPLKQSPGSSSWNSAQGAGQDGSPNPESLRRCQHCGVNENNTPAMRRGPAGPRTLCNACGLMWANKVGHFANKYGFDEMLAETMVPGMGAAWGFIVNPLTPSGGLDVGTLRDLSKGGRNLPVEQSRLDPPVDVKPTVLEGEFSVIENEQGISEEPSKTVGAEGLNDHASNPGDEELSESAEHLTKTLPLVICHSSENDDEQEPVVELSNPSDAGMSNPSDTDIDIPGNFD*