AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467910 MtrunA17_Chr3g0122411 94.183 447 13 1 1 447 1 434 0.0 863
Msa0467910 MtrunA17_Chr8g0377421 47.748 333 128 5 1 325 1 295 2.09e-86 266
Msa0467910 MtrunA17_Chr8g0377401 55.061 247 88 5 1 237 1 234 1.17e-68 219
Msa0467910 MtrunA17_Chr8g0377431 47.748 222 94 6 1 218 1 204 4.64e-48 164
Msa0467910 MtrunA17_Chr5g0420051 41.827 208 112 4 39 240 52 256 4.05e-40 149
Msa0467910 MtrunA17_Chr7g0231911 48.447 161 79 3 93 249 73 233 5.36e-38 140
Msa0467910 MtrunA17_Chr7g0258471 36.897 290 123 9 120 387 91 342 1.08e-36 139
Msa0467910 MtrunA17_Chr8g0360361 70.000 80 24 0 163 242 63 142 5.84e-36 130
Msa0467910 MtrunA17_Chr3g0132091 49.606 127 61 3 151 276 58 182 1.52e-35 134
Msa0467910 MtrunA17_Chr4g0061651 50.781 128 56 2 117 240 74 198 2.84e-35 136
Msa0467910 MtrunA17_Chr4g0046991 55.963 109 32 1 130 238 54 146 9.50e-35 126
Msa0467910 MtrunA17_Chr8g0334671 48.684 152 63 3 118 261 147 291 4.80e-34 130
Msa0467910 MtrunA17_Chr7g0224821 59.341 91 34 1 154 244 69 156 8.74e-33 127
Msa0467910 MtrunA17_Chr8g0386271 56.311 103 42 2 164 266 98 197 1.68e-32 127
Msa0467910 MtrunA17_Chr2g0282521 57.895 95 39 1 148 242 48 141 3.86e-32 119
Msa0467910 MtrunA17_Chr2g0308321 60.000 90 36 0 151 240 157 246 8.72e-31 124
Msa0467910 MtrunA17_Chr1g0194121 56.842 95 41 0 150 244 132 226 3.04e-29 121
Msa0467910 MtrunA17_Chr2g0302791 47.934 121 55 2 134 247 102 221 1.40e-28 119
Msa0467910 MtrunA17_Chr1g0162871 58.621 87 36 0 163 249 102 188 2.28e-28 118
Msa0467910 MtrunA17_Chr8g0377391 47.531 162 74 6 262 412 1 162 5.53e-28 108
Msa0467910 MtrunA17_Chr7g0270541 61.250 80 31 0 165 244 145 224 2.17e-26 112
Msa0467910 MtrunA17_Chr2g0286661 48.315 89 46 0 150 238 88 176 7.72e-22 98.6
Msa0467910 MtrunA17_Chr2g0317041 56.452 62 27 0 150 211 84 145 2.71e-19 84.7
Msa0467910 MtrunA17_Chr1g0175031 46.602 103 49 2 115 211 18 120 9.36e-19 82.4
Msa0467910 MtrunA17_Chr8g0377411 50.000 98 41 3 346 438 3 97 7.67e-14 67.4
Msa0467910 MtrunA17_Chr1g0175021 33.721 172 94 5 212 381 8 161 6.40e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467910 AT5G43270.3 39.031 392 167 16 1 366 1 346 7.29e-55 188
Msa0467910 AT5G43270.1 39.031 392 167 16 1 366 1 346 7.29e-55 188
Msa0467910 AT5G43270.2 39.031 392 167 16 1 366 1 346 7.29e-55 188
Msa0467910 AT1G27370.6 47.674 258 110 7 1 240 1 251 1.65e-53 182
Msa0467910 AT1G27370.1 47.674 258 110 7 1 240 1 251 5.90e-53 182
Msa0467910 AT1G27370.5 47.674 258 110 7 1 240 1 251 5.90e-53 182
Msa0467910 AT1G27370.3 47.674 258 110 7 1 240 1 251 5.90e-53 182
Msa0467910 AT1G27370.2 47.674 258 110 7 1 240 1 251 5.90e-53 182
Msa0467910 AT1G27370.4 47.674 258 110 7 1 240 1 251 5.90e-53 182
Msa0467910 AT1G27370.7 47.674 258 110 7 1 240 1 251 5.90e-53 182
Msa0467910 AT1G27360.2 38.402 388 200 14 1 366 1 371 1.26e-51 179
Msa0467910 AT1G27360.1 38.402 388 200 14 1 366 1 371 1.26e-51 179
Msa0467910 AT1G27360.3 38.402 388 200 14 1 366 1 371 1.26e-51 179
Msa0467910 AT1G27360.4 38.402 388 200 14 1 366 1 371 1.26e-51 179
Msa0467910 AT2G42200.1 38.996 259 122 10 120 371 32 261 1.23e-35 135
Msa0467910 AT1G69170.1 66.304 92 31 0 148 239 107 198 1.85e-35 136
Msa0467910 AT3G57920.1 53.279 122 44 3 120 241 27 135 3.55e-34 131
Msa0467910 AT1G02065.1 53.279 122 49 2 118 238 147 261 7.15e-33 127
Msa0467910 AT5G50570.1 60.976 82 32 0 163 244 99 180 1.80e-31 124
Msa0467910 AT5G50570.2 60.976 82 32 0 163 244 99 180 1.80e-31 124
Msa0467910 AT5G50670.1 60.976 82 32 0 163 244 99 180 1.80e-31 124
Msa0467910 AT5G50670.2 60.976 82 32 0 163 244 99 180 1.80e-31 124
Msa0467910 AT2G33810.1 59.091 88 33 1 151 238 43 127 1.04e-30 115
Msa0467910 AT1G76580.2 60.674 89 35 0 163 251 112 200 2.64e-30 124
Msa0467910 AT1G76580.3 60.674 89 35 0 163 251 112 200 2.96e-30 124
Msa0467910 AT1G76580.1 60.674 89 35 0 163 251 112 200 5.23e-30 124
Msa0467910 AT3G60030.1 61.250 80 31 0 165 244 127 206 3.57e-29 121
Msa0467910 AT1G53160.3 59.494 79 32 0 165 243 54 132 1.22e-28 111
Msa0467910 AT2G47070.1 60.215 93 36 1 165 256 106 198 1.40e-28 119
Msa0467910 AT1G53160.2 45.385 130 56 4 165 288 54 174 1.56e-28 111
Msa0467910 AT1G53160.1 45.385 130 56 4 165 288 54 174 1.56e-28 111
Msa0467910 AT1G20980.1 60.000 95 37 1 151 244 106 200 3.99e-28 118
Msa0467910 AT3G15270.1 60.811 74 29 0 165 238 63 136 5.41e-28 109
Msa0467910 AT1G02065.2 46.875 96 43 2 118 212 147 235 5.94e-19 86.3
Msa0467910 AT5G18830.2 51.316 76 36 1 165 239 138 213 5.09e-18 87.4
Msa0467910 AT5G18830.3 51.316 76 36 1 165 239 138 213 5.70e-18 87.4
Msa0467910 AT5G18830.1 51.316 76 36 1 165 239 138 213 6.16e-18 87.0
Msa0467910 AT2G47070.2 60.294 68 26 1 190 256 2 69 2.38e-16 82.0

Find 170 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCTCTTTACACTCTTT+TGG 0.140706 3_3:-69394814 Msa0467910:five_prime_UTR
GGTTTAGCTTGATTGGTTTC+TGG 0.141242 3_3:-69394457 Msa0467910:five_prime_UTR
TTTGGATCAGACAAGGTATT+TGG 0.193506 3_3:+69391749 None:intergenic
TTCCAACTAAACACAGATTT+TGG 0.195484 3_3:+69394370 None:intergenic
GCTAAATTTGAAGTATTCTT+TGG 0.209568 3_3:+69392122 None:intergenic
TGCAGAGGAAGAGGCTTTCT+TGG 0.222637 3_3:+69393085 None:intergenic
TTGATATTGGCTTTCCATTA+TGG 0.227294 3_3:-69394620 Msa0467910:five_prime_UTR
CAAGCTTTCATGATGACTTT+TGG 0.235533 3_3:-69394886 Msa0467910:five_prime_UTR
AGCTTGCTGTTGGGCATGTC+TGG 0.241731 3_3:+69392095 None:intergenic
CTGTGATAAATGTGAATTAT+TGG 0.244929 3_3:-69394273 Msa0467910:five_prime_UTR
TCATGCAAATATTAAATTAC+TGG 0.261187 3_3:-69394001 Msa0467910:intron
GGTTTCTGGCATTTATGATA+TGG 0.273991 3_3:-69394443 Msa0467910:five_prime_UTR
GGATTCAATTTCACTGCTTC+AGG 0.274502 3_3:+69392663 None:intergenic
GAGCATAAAATCTTTGGTTT+GGG 0.292731 3_3:+69392070 None:intergenic
TTTGGGTTTATCATATTCTA+AGG 0.293376 3_3:-69394796 Msa0467910:five_prime_UTR
CCATTATGGTTTAAAACTTC+AGG 0.298202 3_3:-69394606 Msa0467910:five_prime_UTR
TCCAAACATGTACTCATTAT+AGG 0.303289 3_3:-69394094 Msa0467910:five_prime_UTR
TGAATTAGACATCATACTTA+TGG 0.306180 3_3:-69394036 Msa0467910:five_prime_UTR
TTTAGACGATTCTTTCTTAC+CGG 0.323854 3_3:+69393205 None:intergenic
TGAGCATAAAATCTTTGGTT+TGG 0.329729 3_3:+69392069 None:intergenic
ACCTATAATGAGTACATGTT+TGG 0.334062 3_3:+69394093 None:intergenic
TTAACATCTTGTGTAGCATT+TGG 0.347549 3_3:+69391731 None:intergenic
GCAAGGGAAACTTGACTCAT+AGG 0.354069 3_3:+69391469 None:intergenic
AATCTTGGTTCCTTTGCCTT+TGG 0.356006 3_3:+69391980 None:intergenic
GCTGAGAAAGCTTGAGATAA+AGG 0.371578 3_3:-69394762 Msa0467910:five_prime_UTR
TTGTGGCCTCGACCTCTCTT+TGG 0.373974 3_3:-69392988 Msa0467910:CDS
AAGTTTAGGTAGTGCATGTT+TGG 0.375544 3_3:-69394222 Msa0467910:five_prime_UTR
CTCTTCTGTCAACCAATTCA+TGG 0.377885 3_3:-69391697 Msa0467910:CDS
TACATCTTAAATGCTGGCTT+TGG 0.377938 3_3:+69394532 None:intergenic
TACTACCACCACAGGCGATT+TGG 0.381836 3_3:+69392923 None:intergenic
TAGAAGAGTCTCTTTCCTTA+AGG 0.384235 3_3:+69394657 None:intergenic
TTCTTACCGGTGGAATTGTC+TGG 0.385894 3_3:+69393218 None:intergenic
TGATATGGAGGTTTGGTTGT+TGG 0.388695 3_3:-69394428 Msa0467910:five_prime_UTR
ACATGCACCTGCTACATTGC+TGG 0.389565 3_3:+69392877 None:intergenic
ATTGATAGAATACATATTAC+AGG 0.392874 3_3:-69391782 Msa0467910:CDS
GCATGTTTGGATTGGAGGGT+GGG 0.395614 3_3:-69394209 Msa0467910:five_prime_UTR
AATCTCCCGGGCAATGGGAC+TGG 0.397861 3_3:-69393478 Msa0467910:CDS
GCTGCTGGAGAAGTTTCAAT+TGG 0.402606 3_3:+69393176 None:intergenic
CCATGTTGAAAGTGAAGTTT+AGG 0.402615 3_3:-69394236 Msa0467910:five_prime_UTR
GCATTTATGATATGGAGGTT+TGG 0.408107 3_3:-69394435 Msa0467910:five_prime_UTR
AGCTGCCAGGTGGAAGGTTG+TGG 0.411491 3_3:-69393005 Msa0467910:CDS
ATGTACTAGCAAGGTCCTTA+AGG 0.412487 3_3:-69394672 Msa0467910:five_prime_UTR
ATCTCCCGGGCAATGGGACT+GGG 0.414643 3_3:-69393477 Msa0467910:CDS
CAGCGCCTGTATCTCGTTCT+CGG 0.419065 3_3:-69391540 Msa0467910:CDS
AATTTCACTGCTTCAGGCTG+AGG 0.421915 3_3:+69392669 None:intergenic
ACAATCTACTGATTGGAGTA+TGG 0.424631 3_3:-69393408 Msa0467910:CDS
TGCATGTTTGGATTGGAGGG+TGG 0.426451 3_3:-69394210 Msa0467910:five_prime_UTR
CGTGAAATCTCCCGGGCAAT+GGG 0.426658 3_3:-69393483 Msa0467910:CDS
CAGCATTTAAGATGTAGAAT+AGG 0.427718 3_3:-69394525 Msa0467910:five_prime_UTR
CAATATTCCAGTGACGAAAA+AGG 0.427818 3_3:+69391590 None:intergenic
GCTTATGTTGCAACCAGAAA+AGG 0.430624 3_3:+69394908 None:intergenic
GTGAGCAATGGTTCTGCTGC+TGG 0.432022 3_3:+69393161 None:intergenic
GTTGAGGTTGTTGTTAATGT+GGG 0.433390 3_3:-69394326 Msa0467910:five_prime_UTR
GTATTCTTTGGAAAAGCAAA+TGG 0.434089 3_3:+69392134 None:intergenic
ACAACCTGGGACAGCAATCT+TGG 0.439368 3_3:+69391965 None:intergenic
AAGTTTCCCTTGCAACCAGC+TGG 0.440887 3_3:-69391459 Msa0467910:CDS
TAGTGCATGTTTGGATTGGA+GGG 0.445875 3_3:-69394213 Msa0467910:five_prime_UTR
GAATTAGACATCATACTTAT+GGG 0.446634 3_3:-69394035 Msa0467910:five_prime_UTR
ATACACTCCAATCGGACAAC+CGG 0.451604 3_3:-69391644 Msa0467910:CDS
TACTTTGAGGATGTTAGCAC+TGG 0.451656 3_3:-69393116 Msa0467910:CDS
TCTTCTGTCAACCAATTCAT+GGG 0.452114 3_3:-69391696 Msa0467910:CDS
CGAGATACAGGCGCTGGAGC+TGG 0.455430 3_3:+69391547 None:intergenic
TGTTTGGATTGGAGGGTGGG+TGG 0.460095 3_3:-69394206 Msa0467910:five_prime_UTR
CATCAAACTCTGAGAGATCA+TGG 0.461380 3_3:+69392748 None:intergenic
ACATTTATCACAGCAATGTC+AGG 0.466045 3_3:+69394283 None:intergenic
CAACCTTCCACCTGGCAGCT+TGG 0.467365 3_3:+69393008 None:intergenic
TGTTGAGGTTGTTGTTAATG+TGG 0.470186 3_3:-69394327 Msa0467910:five_prime_UTR
TCGCCTGTGGTGGTAGTAGC+TGG 0.470263 3_3:-69392918 Msa0467910:CDS
GTAGTGCATGTTTGGATTGG+AGG 0.471021 3_3:-69394214 Msa0467910:five_prime_UTR
GTTGGGATGTTGATTCCATC+TGG 0.471449 3_3:-69393365 Msa0467910:CDS
CCTTTCTTTCCGCACAAAAG+AGG 0.471950 3_3:+69393059 None:intergenic
TAGGTAGTGCATGTTTGGAT+TGG 0.472523 3_3:-69394217 Msa0467910:five_prime_UTR
CTATTCTACATCTTAAATGC+TGG 0.472880 3_3:+69394526 None:intergenic
GTAATTTAATATTTGCATGA+AGG 0.476058 3_3:+69394004 None:intergenic
ACAGGTTACAATCTACTGAT+TGG 0.476801 3_3:-69393415 Msa0467910:CDS
TGGTAAAAGATTCTACTTTG+AGG 0.477123 3_3:-69393129 Msa0467910:CDS
AGGGGTGCCGGTTGTCCGAT+TGG 0.477616 3_3:+69391637 None:intergenic
TGTGGTGGTAGTAGCTGGTT+TGG 0.481417 3_3:-69392913 Msa0467910:CDS
TGCCAAAATCTGTGTTTAGT+TGG 0.483513 3_3:-69394372 Msa0467910:five_prime_UTR
ACGTGAAATCTCCCGGGCAA+TGG 0.485685 3_3:-69393484 Msa0467910:CDS
TAATTTAATATTTGCATGAA+GGG 0.486333 3_3:+69394005 None:intergenic
GAAGATCGAGAAATCAATGT+TGG 0.486543 3_3:-69393383 Msa0467910:CDS
AAGAGGAACTGCAGAGGAAG+AGG 0.487764 3_3:+69393076 None:intergenic
CCTAAACTTCACTTTCAACA+TGG 0.491187 3_3:+69394236 None:intergenic
ATCATATGGACCCCATGAAT+TGG 0.492799 3_3:+69391685 None:intergenic
TTGTCCGATTGGAGTGTATG+AGG 0.494492 3_3:+69391648 None:intergenic
AGCATACTCATTAATCCAGC+TGG 0.497222 3_3:+69391444 None:intergenic
GATTGGAGTGTATGAGGGAG+GGG 0.501793 3_3:+69391654 None:intergenic
CTTTGCCTTTGGATATAAAG+TGG 0.501899 3_3:+69391991 None:intergenic
GAGTGGAACGTGAAATCTCC+CGG 0.503280 3_3:-69393491 Msa0467910:CDS
CATTAATCCAGCTGGTTGCA+AGG 0.507260 3_3:+69391452 None:intergenic
TTGATTCCATCTGGTGGTAG+TGG 0.508737 3_3:-69393356 Msa0467910:CDS
AAGATCGAGAAATCAATGTT+GGG 0.508795 3_3:-69393382 Msa0467910:CDS
CACAAATTCTATGTTTCCGA+TGG 0.510237 3_3:+69392955 None:intergenic
TAATGTGGGGACTCATTCAA+TGG 0.511610 3_3:-69394312 Msa0467910:five_prime_UTR
CAAGGGAAACTTGACTCATA+GGG 0.517421 3_3:+69391470 None:intergenic
CATGCTAAATCCAAGCTGCC+AGG 0.528294 3_3:-69393018 Msa0467910:CDS
GTAACCCGAGAACGAGATAC+AGG 0.528459 3_3:+69391535 None:intergenic
CGATTGGAGTGTATGAGGGA+GGG 0.531040 3_3:+69391653 None:intergenic
TTCTGGCATTTATGATATGG+AGG 0.531477 3_3:-69394440 Msa0467910:five_prime_UTR
TGCAGATGGGAGGCAGACAA+TGG 0.534432 3_3:-69392159 Msa0467910:intron
CCTCCCTCATACACTCCAAT+CGG 0.535964 3_3:-69391652 Msa0467910:CDS
TATTCTTTGGAAAAGCAAAT+GGG 0.538218 3_3:+69392135 None:intergenic
AGCGCCTGTATCTCGTTCTC+GGG 0.540985 3_3:-69391539 Msa0467910:CDS
ACATCAATGTTAACTCAAGA+AGG 0.548574 3_3:-69393245 Msa0467910:CDS
GGAACCAAGATTGCTGTCCC+AGG 0.548599 3_3:-69391969 Msa0467910:intron
GCAGATGGGAGGCAGACAAT+GGG 0.549297 3_3:-69392158 Msa0467910:intron
CAAAAGCAGCAGAAACTCAC+AGG 0.550624 3_3:-69393433 Msa0467910:CDS
GGTAAGAAAGAATCGTCTAA+AGG 0.551763 3_3:-69393203 Msa0467910:CDS
TTGGCACACTGATCAACATC+AGG 0.552387 3_3:-69391570 Msa0467910:CDS
TTTGGATATAAAGTGGCCAC+TGG 0.552682 3_3:+69391998 None:intergenic
AGTTGCATACTGAGGGGTGC+CGG 0.554723 3_3:+69391625 None:intergenic
CCAAGCTTTAGTGTGAGCAA+TGG 0.557830 3_3:+69393149 None:intergenic
AGCTCAAATCTAACAAAGGA+AGG 0.557965 3_3:+69394500 None:intergenic
GGGGACGAAGAGAGAGCTGA+TGG 0.559258 3_3:+69392642 None:intergenic
CTAAACTTCACTTTCAACAT+GGG 0.559810 3_3:+69394237 None:intergenic
AAAGAGAGGAAGAAGATCAC+AGG 0.559961 3_3:+69394826 None:intergenic
ATTGGAGTGTATGAGGGAGG+GGG 0.561383 3_3:+69391655 None:intergenic
AGAATACTTCAAATTTAGCA+TGG 0.561391 3_3:-69392118 Msa0467910:CDS
GAATAATTCATCATCAAATG+AGG 0.562543 3_3:-69393276 Msa0467910:CDS
ATTAATCCAGCTGGTTGCAA+GGG 0.568989 3_3:+69391453 None:intergenic
CGCTGAGCAGTTGCATACTG+AGG 0.570454 3_3:+69391617 None:intergenic
AATCCAAGCTGCCAGGTGGA+AGG 0.571632 3_3:-69393011 Msa0467910:CDS
CTTTAGCCAAAGAGAGGTCG+AGG 0.573405 3_3:+69392982 None:intergenic
TGTGAATTATTGGAATCTGA+TGG 0.578849 3_3:-69394263 Msa0467910:five_prime_UTR
CGAGGCCACAACCTTCCACC+TGG 0.580184 3_3:+69393000 None:intergenic
CTTGAGATTTATACCATAGG+GGG 0.580458 3_3:+69392623 None:intergenic
AGACGATTCTTTCTTACCGG+TGG 0.582162 3_3:+69393208 None:intergenic
TTAAAGCTCAAATCTAACAA+AGG 0.586460 3_3:+69394496 None:intergenic
AGTGGCCACTTTATATCCAA+AGG 0.587042 3_3:-69391996 Msa0467910:CDS
CCATTGCTCACACTAAAGCT+TGG 0.588106 3_3:-69393149 Msa0467910:CDS
CTTTGGCTAAAGATTACCAT+CGG 0.588534 3_3:-69392971 Msa0467910:CDS
TGTCCGATTGGAGTGTATGA+GGG 0.588850 3_3:+69391649 None:intergenic
GTCTTTCAGATCACAATGCA+AGG 0.591028 3_3:-69392701 Msa0467910:CDS
GCATAAAATCTTTGGTTTGG+GGG 0.594228 3_3:+69392072 None:intergenic
AATATGTGATTCATTTGTTG+AGG 0.594917 3_3:-69394342 Msa0467910:five_prime_UTR
GCTGAGCAGTTGCATACTGA+GGG 0.602329 3_3:+69391618 None:intergenic
TTGACAGAAGAGAGAGAGCA+CGG 0.603893 3_3:+69391708 None:intergenic
AGCATAAAATCTTTGGTTTG+GGG 0.604215 3_3:+69392071 None:intergenic
CCGATTGGAGTGTATGAGGG+AGG 0.604444 3_3:+69391652 None:intergenic
TTGAGGTTGTTGTTAATGTG+GGG 0.607836 3_3:-69394325 Msa0467910:five_prime_UTR
CACTTTATATCCAAAGGCAA+AGG 0.613225 3_3:-69391990 Msa0467910:CDS
ATCACAGCAATGTCAGGAGT+CGG 0.614030 3_3:+69394289 None:intergenic
CGAGAACGAGATACAGGCGC+TGG 0.614056 3_3:+69391541 None:intergenic
AAACCAGCTACTACCACCAC+AGG 0.617364 3_3:+69392915 None:intergenic
TTGCATTGTGATCTGAAAGA+CGG 0.621589 3_3:+69392703 None:intergenic
TGTGAGGACTTGTCATGGAG+TGG 0.623994 3_3:-69393508 Msa0467910:exon
GAATTTGTGAGGACTTGTCA+TGG 0.630777 3_3:-69393513 Msa0467910:exon
GAATAGCCACTACCACCAGA+TGG 0.631021 3_3:+69393350 None:intergenic
TCATTCCAAATCGCCTGTGG+TGG 0.632811 3_3:-69392928 Msa0467910:CDS
CTTCTGTCAACCAATTCATG+GGG 0.634971 3_3:-69391695 Msa0467910:CDS
AGTGGAACGTGAAATCTCCC+GGG 0.641060 3_3:-69393490 Msa0467910:CDS
ACCCAAAAGAGTGTAAAGAG+AGG 0.641317 3_3:+69394812 None:intergenic
TAGTGAGTTTGACAAAATCA+CGG 0.643134 3_3:+69394121 None:intergenic
ATCTACTGATTGGAGTATGG+AGG 0.643141 3_3:-69393405 Msa0467910:CDS
TTGGAGTGTATGAGGGAGGG+GGG 0.645515 3_3:+69391656 None:intergenic
GGGATGTTGATTCCATCTGG+TGG 0.647072 3_3:-69393362 Msa0467910:CDS
CAGTCATTCCAAATCGCCTG+TGG 0.648152 3_3:-69392931 Msa0467910:CDS
TGTAGCATTTGGATCAGACA+AGG 0.648361 3_3:+69391742 None:intergenic
ATATTCATTCTGCAGATGGG+AGG 0.649420 3_3:-69392169 Msa0467910:intron
GGTTCTCCAGACAATTCCAC+CGG 0.652614 3_3:-69393224 Msa0467910:CDS
TCTTGAGATTTATACCATAG+GGG 0.653113 3_3:+69392622 None:intergenic
GGTAATCTTTAGCCAAAGAG+AGG 0.662641 3_3:+69392976 None:intergenic
CTGAGCAGTTGCATACTGAG+GGG 0.662729 3_3:+69391619 None:intergenic
GCTAAATCCAAGCTGCCAGG+TGG 0.663879 3_3:-69393015 Msa0467910:CDS
ATGCTATCTGATGATTCCAG+TGG 0.666446 3_3:-69392014 Msa0467910:CDS
TAATGCATGCTTCATCCTCG+AGG 0.674783 3_3:-69393316 Msa0467910:CDS
CATCTGTATATGAATTTGTG+AGG 0.689586 3_3:-69393524 Msa0467910:five_prime_UTR
GCACAAAAGAGGAACTGCAG+AGG 0.694164 3_3:+69393070 None:intergenic
AAAAGAAAATGACAATGACA+TGG 0.723335 3_3:-69395072 Msa0467910:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTTTATTTTTATTTTTG+TGG - chr3_3:69391527-69391546 Msa0467910:CDS 10.0%
!!! TGATTTTCTTTTTCTTTTTT+GGG - chr3_3:69391503-69391522 Msa0467910:CDS 15.0%
!!! TACATAATAGATTTTGATAT+TGG - chr3_3:69391919-69391938 Msa0467910:intron 15.0%
!! TAATTTAATATTTGCATGAA+GGG + chr3_3:69392550-69392569 None:intergenic 15.0%
!!! TTGGTTTGTTTAAAATAAAT+TGG - chr3_3:69393745-69393764 Msa0467910:intron 15.0%
!!! ACACTTAATATTTTCTTATA+AGG + chr3_3:69394271-69394290 None:intergenic 15.0%
!!! ATTAAATTTAGTTTGTTCAA+TGG - chr3_3:69394651-69394670 Msa0467910:five_prime_UTR 15.0%
!!! GTGATTTTCTTTTTCTTTTT+TGG - chr3_3:69391502-69391521 Msa0467910:CDS 20.0%
!!! GTTATTATTATTTCCTTTTC+TGG - chr3_3:69391631-69391650 Msa0467910:CDS 20.0%
!!! TTTGCATAAGAAAATTTTCA+TGG + chr3_3:69391817-69391836 None:intergenic 20.0%
!!! CAAATGTTTCTGTTTTTTTA+GGG - chr3_3:69391833-69391852 Msa0467910:intron 20.0%
!!! ATCTTTTTTTTGGTACAATT+TGG + chr3_3:69391973-69391992 None:intergenic 20.0%
!!! GGTACAAAATATCTTTTTTT+TGG + chr3_3:69391983-69392002 None:intergenic 20.0%
!!! TTTAAAAAAGATGCTTTTTG+AGG - chr3_3:69392074-69392093 Msa0467910:CDS 20.0%
!! GTAATTTAATATTTGCATGA+AGG + chr3_3:69392551-69392570 None:intergenic 20.0%
!! TCATGCAAATATTAAATTAC+TGG - chr3_3:69392551-69392570 Msa0467910:intron 20.0%
!!! GTAAACATTTTACATTAGTA+GGG - chr3_3:69392573-69392592 Msa0467910:intron 20.0%
!! AGAATTTATACAGATATACT+TGG - chr3_3:69392849-69392868 Msa0467910:intron 20.0%
!! AACTATACAAGATAATAACA+AGG + chr3_3:69392940-69392959 None:intergenic 20.0%
!! AACTACTAGTCAAATAATAA+TGG + chr3_3:69392995-69393014 None:intergenic 20.0%
!!! AACTTAAACTATGATTTTGA+AGG - chr3_3:69393779-69393798 Msa0467910:intron 20.0%
!! TTATGAGAGAATTATAAGAA+TGG - chr3_3:69394051-69394070 Msa0467910:five_prime_UTR 20.0%
!!! TTAGAATTTCTTTTGAGAAA+TGG + chr3_3:69394091-69394110 None:intergenic 20.0%
!!! TACTCTATGACTATATTTTT+GGG + chr3_3:69394197-69394216 None:intergenic 20.0%
!!! ATACTCTATGACTATATTTT+TGG + chr3_3:69394198-69394217 None:intergenic 20.0%
!! TTTAATAAGAAATCATGACT+CGG + chr3_3:69394637-69394656 None:intergenic 20.0%
!! ATTGATAGAATACATATTAC+AGG - chr3_3:69394770-69394789 Msa0467910:five_prime_UTR 20.0%
! AAAAGAAAATGACAATGACA+TGG - chr3_3:69391480-69391499 Msa0467910:CDS 25.0%
!!! AAAAGGCATCTTTTTTTCAT+GGG + chr3_3:69391697-69391716 None:intergenic 25.0%
!!! AAAAAGGCATCTTTTTTTCA+TGG + chr3_3:69391698-69391717 None:intergenic 25.0%
! ATCACAGGAAGAAAAAAAAA+AGG + chr3_3:69391714-69391733 None:intergenic 25.0%
!! TTTGGGTTTATCATATTCTA+AGG - chr3_3:69391756-69391775 Msa0467910:CDS 25.0%
!!! GCAAATGTTTCTGTTTTTTT+AGG - chr3_3:69391832-69391851 Msa0467910:intron 25.0%
!!! TTCTGTTTTTTTAGGGTAAT+AGG - chr3_3:69391840-69391859 Msa0467910:intron 25.0%
!!! TCTGTTTTTTTAGGGTAATA+GGG - chr3_3:69391841-69391860 Msa0467910:intron 25.0%
! CTAGTACATATAAAAAGCTT+TGG + chr3_3:69391869-69391888 None:intergenic 25.0%
! TTAAAGCTCAAATCTAACAA+AGG + chr3_3:69392059-69392078 None:intergenic 25.0%
!! AATATGTGATTCATTTGTTG+AGG - chr3_3:69392210-69392229 Msa0467910:intron 25.0%
! CTGTGATAAATGTGAATTAT+TGG - chr3_3:69392279-69392298 Msa0467910:intron 25.0%
!! GTAGCTTTTGCAAAAATTTA+CGG - chr3_3:69392401-69392420 Msa0467910:intron 25.0%
! TGAATTAGACATCATACTTA+TGG - chr3_3:69392516-69392535 Msa0467910:intron 25.0%
! GAATTAGACATCATACTTAT+GGG - chr3_3:69392517-69392536 Msa0467910:intron 25.0%
!! GGTAAACATTTTACATTAGT+AGG - chr3_3:69392572-69392591 Msa0467910:intron 25.0%
! AAAATACCCTTGTAATTCTT+TGG - chr3_3:69392623-69392642 Msa0467910:intron 25.0%
! TTTAGGAATTAGTAGTTCAT+AGG - chr3_3:69392762-69392781 Msa0467910:intron 25.0%
! GAATAATTCATCATCAAATG+AGG - chr3_3:69393276-69393295 Msa0467910:CDS 25.0%
! TTTAAACAAACCAAAAAGAC+AGG + chr3_3:69393739-69393758 None:intergenic 25.0%
! TTCTTGAGATTTATACCATA+GGG + chr3_3:69393934-69393953 None:intergenic 25.0%
! ATTCTTGAGATTTATACCAT+AGG + chr3_3:69393935-69393954 None:intergenic 25.0%
! TTCAGTTTCTTTGTAAGAAA+TGG - chr3_3:69394217-69394236 Msa0467910:five_prime_UTR 25.0%
! TTTAATATTCATTCTGCAGA+TGG - chr3_3:69394379-69394398 Msa0467910:five_prime_UTR 25.0%
! TTAATATTCATTCTGCAGAT+GGG - chr3_3:69394380-69394399 Msa0467910:five_prime_UTR 25.0%
!! TATTCTTTGGAAAAGCAAAT+GGG + chr3_3:69394420-69394439 None:intergenic 25.0%
!! GCTAAATTTGAAGTATTCTT+TGG + chr3_3:69394433-69394452 None:intergenic 25.0%
! AGAATACTTCAAATTTAGCA+TGG - chr3_3:69394434-69394453 Msa0467910:five_prime_UTR 25.0%
!!! AGTTTTGAGCATAAAATCTT+TGG + chr3_3:69394491-69394510 None:intergenic 25.0%
!!! TAACAGTTGTTTCTACAAAT+AGG + chr3_3:69394745-69394764 None:intergenic 25.0%
!! TATTTTTGTGGATGTGTGAT+TGG - chr3_3:69391539-69391558 Msa0467910:CDS 30.0%
!!! ATGAGTGCTATTTTTGTTGA+AGG - chr3_3:69391592-69391611 Msa0467910:CDS 30.0%
!!! TGAGTGCTATTTTTGTTGAA+GGG - chr3_3:69391593-69391612 Msa0467910:CDS 30.0%
!!! CTGTTTTTTTAGGGTAATAG+GGG - chr3_3:69391842-69391861 Msa0467910:intron 30.0%
! GCTTTTTATATGTACTAGCA+AGG - chr3_3:69391871-69391890 Msa0467910:intron 30.0%
!! TTGATATTGGCTTTCCATTA+TGG - chr3_3:69391932-69391951 Msa0467910:intron 30.0%
!!! CCTGAAGTTTTAAACCATAA+TGG + chr3_3:69391949-69391968 None:intergenic 30.0%
! CCATTATGGTTTAAAACTTC+AGG - chr3_3:69391946-69391965 Msa0467910:intron 30.0%
TTGTACCAAAAAAACACTTC+AGG - chr3_3:69391996-69392015 Msa0467910:CDS 30.0%
CTATTCTACATCTTAAATGC+TGG + chr3_3:69392029-69392048 None:intergenic 30.0%
! CAGCATTTAAGATGTAGAAT+AGG - chr3_3:69392027-69392046 Msa0467910:CDS 30.0%
!!! TTTTTGAGGTTTAGCTTGAT+TGG - chr3_3:69392088-69392107 Msa0467910:CDS 30.0%
! TTCCAACTAAACACAGATTT+TGG + chr3_3:69392185-69392204 None:intergenic 30.0%
TGTGAATTATTGGAATCTGA+TGG - chr3_3:69392289-69392308 Msa0467910:intron 30.0%
CTAAACTTCACTTTCAACAT+GGG + chr3_3:69392318-69392337 None:intergenic 30.0%
TAGTGAGTTTGACAAAATCA+CGG + chr3_3:69392434-69392453 None:intergenic 30.0%
TCCAAACATGTACTCATTAT+AGG - chr3_3:69392458-69392477 Msa0467910:intron 30.0%
ACCTATAATGAGTACATGTT+TGG + chr3_3:69392462-69392481 None:intergenic 30.0%
! ATTTTACATTAGTAGGGTTC+AGG - chr3_3:69392579-69392598 Msa0467910:intron 30.0%
! TTTTACATTAGTAGGGTTCA+GGG - chr3_3:69392580-69392599 Msa0467910:intron 30.0%
TAGTTGTAGTAGAACTATCT+TGG - chr3_3:69392663-69392682 Msa0467910:CDS 30.0%
TATAATCCATGTCTTGCTTT+AGG - chr3_3:69392745-69392764 Msa0467910:CDS 30.0%
!!! TCGTACTGTTTTTAAGTGAT+TGG - chr3_3:69392821-69392840 Msa0467910:intron 30.0%
CATCTGTATATGAATTTGTG+AGG - chr3_3:69393028-69393047 Msa0467910:CDS 30.0%
AAGATCGAGAAATCAATGTT+GGG - chr3_3:69393170-69393189 Msa0467910:CDS 30.0%
ACATCAATGTTAACTCAAGA+AGG - chr3_3:69393307-69393326 Msa0467910:CDS 30.0%
TTTAGACGATTCTTTCTTAC+CGG + chr3_3:69393350-69393369 None:intergenic 30.0%
TGGTAAAAGATTCTACTTTG+AGG - chr3_3:69393423-69393442 Msa0467910:CDS 30.0%
! ATTGTCAATGTCATTTGCAT+TGG + chr3_3:69393710-69393729 None:intergenic 30.0%
TCTTGAGATTTATACCATAG+GGG + chr3_3:69393933-69393952 None:intergenic 30.0%
! AAGGCTAATTGATCTTTTAG+GGG + chr3_3:69393962-69393981 None:intergenic 30.0%
! CAAGGCTAATTGATCTTTTA+GGG + chr3_3:69393963-69393982 None:intergenic 30.0%
! ACAAGGCTAATTGATCTTTT+AGG + chr3_3:69393964-69393983 None:intergenic 30.0%
TAAACTAATGAAGCAAGACA+AGG + chr3_3:69393981-69394000 None:intergenic 30.0%
TGAATGGCGATATCTTAAAA+AGG - chr3_3:69394028-69394047 Msa0467910:five_prime_UTR 30.0%
TACAACCAATAGCATATCAA+TGG + chr3_3:69394117-69394136 None:intergenic 30.0%
! ATATGCTATTGGTTGTATGA+AGG - chr3_3:69394120-69394139 Msa0467910:five_prime_UTR 30.0%
! GTATTCTTTGGAAAAGCAAA+TGG + chr3_3:69394421-69394440 None:intergenic 30.0%
!! AGCATAAAATCTTTGGTTTG+GGG + chr3_3:69394484-69394503 None:intergenic 30.0%
! GAGCATAAAATCTTTGGTTT+GGG + chr3_3:69394485-69394504 None:intergenic 30.0%
TGAGCATAAAATCTTTGGTT+TGG + chr3_3:69394486-69394505 None:intergenic 30.0%
!!! ACAAACTTGCTGAAGTTTTT+TGG + chr3_3:69394514-69394533 None:intergenic 30.0%
TTAAGATTAGAGAACAACCT+GGG + chr3_3:69394603-69394622 None:intergenic 30.0%
! TTTAAGATTAGAGAACAACC+TGG + chr3_3:69394604-69394623 None:intergenic 30.0%
TGAAACATGCAATAAACTAG+AGG + chr3_3:69394703-69394722 None:intergenic 30.0%
TTAACATCTTGTGTAGCATT+TGG + chr3_3:69394824-69394843 None:intergenic 30.0%
! CAAGCTTTCATGATGACTTT+TGG - chr3_3:69391666-69391685 Msa0467910:CDS 35.0%
! TTCCTCTCTTTACACTCTTT+TGG - chr3_3:69391738-69391757 Msa0467910:CDS 35.0%
! TCCTCTCTTTACACTCTTTT+GGG - chr3_3:69391739-69391758 Msa0467910:CDS 35.0%
TAGAAGAGTCTCTTTCCTTA+AGG + chr3_3:69391898-69391917 None:intergenic 35.0%
!!! TTGGTCCTGAAGTGTTTTTT+TGG + chr3_3:69392004-69392023 None:intergenic 35.0%
!! TACATCTTAAATGCTGGCTT+TGG + chr3_3:69392023-69392042 None:intergenic 35.0%
AGCTCAAATCTAACAAAGGA+AGG + chr3_3:69392055-69392074 None:intergenic 35.0%
!! GGTTTCTGGCATTTATGATA+TGG - chr3_3:69392109-69392128 Msa0467910:CDS 35.0%
TTCTGGCATTTATGATATGG+AGG - chr3_3:69392112-69392131 Msa0467910:CDS 35.0%
GCATTTATGATATGGAGGTT+TGG - chr3_3:69392117-69392136 Msa0467910:CDS 35.0%
TGCCAAAATCTGTGTTTAGT+TGG - chr3_3:69392180-69392199 Msa0467910:intron 35.0%
! TGTTGAGGTTGTTGTTAATG+TGG - chr3_3:69392225-69392244 Msa0467910:intron 35.0%
! GTTGAGGTTGTTGTTAATGT+GGG - chr3_3:69392226-69392245 Msa0467910:intron 35.0%
! TTGAGGTTGTTGTTAATGTG+GGG - chr3_3:69392227-69392246 Msa0467910:intron 35.0%
ACATTTATCACAGCAATGTC+AGG + chr3_3:69392272-69392291 None:intergenic 35.0%
CCTAAACTTCACTTTCAACA+TGG + chr3_3:69392319-69392338 None:intergenic 35.0%
CCATGTTGAAAGTGAAGTTT+AGG - chr3_3:69392316-69392335 Msa0467910:intron 35.0%
AAGTTTAGGTAGTGCATGTT+TGG - chr3_3:69392330-69392349 Msa0467910:intron 35.0%
TACCCTTGTAATTCTTTGGT+TGG - chr3_3:69392627-69392646 Msa0467910:intron 35.0%
CTCCAACCAAAGAATTACAA+GGG + chr3_3:69392632-69392651 None:intergenic 35.0%
CTTGTAATTCTTTGGTTGGA+GGG - chr3_3:69392631-69392650 Msa0467910:intron 35.0%
TTGTAATTCTTTGGTTGGAG+GGG - chr3_3:69392632-69392651 Msa0467910:intron 35.0%
!! ATCTTGGTTTGCATTTGCAT+AGG - chr3_3:69392679-69392698 Msa0467910:CDS 35.0%
CTAATTCCTAAAGCAAGACA+TGG + chr3_3:69392754-69392773 None:intergenic 35.0%
ACAGGTTACAATCTACTGAT+TGG - chr3_3:69393137-69393156 Msa0467910:CDS 35.0%
! ACAATCTACTGATTGGAGTA+TGG - chr3_3:69393144-69393163 Msa0467910:CDS 35.0%
GAAGATCGAGAAATCAATGT+TGG - chr3_3:69393169-69393188 Msa0467910:CDS 35.0%
GGTAAGAAAGAATCGTCTAA+AGG - chr3_3:69393349-69393368 Msa0467910:CDS 35.0%
CTTTGGCTAAAGATTACCAT+CGG - chr3_3:69393581-69393600 Msa0467910:intron 35.0%
CACAAATTCTATGTTTCCGA+TGG + chr3_3:69393600-69393619 None:intergenic 35.0%
!! CAATTAGCTTCCTGTCTTTT+TGG - chr3_3:69393726-69393745 Msa0467910:intron 35.0%
TTGCATTGTGATCTGAAAGA+CGG + chr3_3:69393852-69393871 None:intergenic 35.0%
CTTGAGATTTATACCATAGG+GGG + chr3_3:69393932-69393951 None:intergenic 35.0%
!! CTAATTGATCTTTTAGGGGA+GGG + chr3_3:69393958-69393977 None:intergenic 35.0%
!!! TTGCCATTTTGTTTCTCGTT+TGG - chr3_3:69394003-69394022 Msa0467910:five_prime_UTR 35.0%
!!! TGCCATTTTGTTTCTCGTTT+GGG - chr3_3:69394004-69394023 Msa0467910:five_prime_UTR 35.0%
ATCCCAAACGAGAAACAAAA+TGG + chr3_3:69394009-69394028 None:intergenic 35.0%
AACCTCCATTGATATGCTAT+TGG - chr3_3:69394109-69394128 Msa0467910:five_prime_UTR 35.0%
AACCAATAGCATATCAATGG+AGG + chr3_3:69394114-69394133 None:intergenic 35.0%
!! GCATAAAATCTTTGGTTTGG+GGG + chr3_3:69394483-69394502 None:intergenic 35.0%
CTTTGCCTTTGGATATAAAG+TGG + chr3_3:69394564-69394583 None:intergenic 35.0%
CACTTTATATCCAAAGGCAA+AGG - chr3_3:69394562-69394581 Msa0467910:five_prime_UTR 35.0%
! AATAAGAAATCATGACTCGG+AGG + chr3_3:69394634-69394653 None:intergenic 35.0%
!! CAGTTGTTTCTACAAATAGG+AGG + chr3_3:69394742-69394761 None:intergenic 35.0%
! TTTGGATCAGACAAGGTATT+TGG + chr3_3:69394806-69394825 None:intergenic 35.0%
TCTTCTGTCAACCAATTCAT+GGG - chr3_3:69394856-69394875 Msa0467910:five_prime_UTR 35.0%
CAATATTCCAGTGACGAAAA+AGG + chr3_3:69394965-69394984 None:intergenic 35.0%
!! CTTTTTCGTCACTGGAATAT+TGG - chr3_3:69394963-69394982 Msa0467910:five_prime_UTR 35.0%
GCTTATGTTGCAACCAGAAA+AGG + chr3_3:69391647-69391666 None:intergenic 40.0%
AAAGAGAGGAAGAAGATCAC+AGG + chr3_3:69391729-69391748 None:intergenic 40.0%
! ACCCAAAAGAGTGTAAAGAG+AGG + chr3_3:69391743-69391762 None:intergenic 40.0%
GCTGAGAAAGCTTGAGATAA+AGG - chr3_3:69391790-69391809 Msa0467910:CDS 40.0%
ATGTACTAGCAAGGTCCTTA+AGG - chr3_3:69391880-69391899 Msa0467910:intron 40.0%
!! GGTTTAGCTTGATTGGTTTC+TGG - chr3_3:69392095-69392114 Msa0467910:CDS 40.0%
! TGATATGGAGGTTTGGTTGT+TGG - chr3_3:69392124-69392143 Msa0467910:CDS 40.0%
TAATGTGGGGACTCATTCAA+TGG - chr3_3:69392240-69392259 Msa0467910:intron 40.0%
TAGGTAGTGCATGTTTGGAT+TGG - chr3_3:69392335-69392354 Msa0467910:intron 40.0%
! TAGTGCATGTTTGGATTGGA+GGG - chr3_3:69392339-69392358 Msa0467910:intron 40.0%
CCTCCAACCAAAGAATTACA+AGG + chr3_3:69392633-69392652 None:intergenic 40.0%
CCTTGTAATTCTTTGGTTGG+AGG - chr3_3:69392630-69392649 Msa0467910:intron 40.0%
CCAGAGTAATGATTGGAAGA+AGG + chr3_3:69392887-69392906 None:intergenic 40.0%
CCTTCTTCCAATCATTACTC+TGG - chr3_3:69392884-69392903 Msa0467910:intron 40.0%
GCAGAAACCAGAGTAATGAT+TGG + chr3_3:69392894-69392913 None:intergenic 40.0%
GAATTTGTGAGGACTTGTCA+TGG - chr3_3:69393039-69393058 Msa0467910:CDS 40.0%
! ATCTACTGATTGGAGTATGG+AGG - chr3_3:69393147-69393166 Msa0467910:CDS 40.0%
! TACTTTGAGGATGTTAGCAC+TGG - chr3_3:69393436-69393455 Msa0467910:CDS 40.0%
GGTAATCTTTAGCCAAAGAG+AGG + chr3_3:69393579-69393598 None:intergenic 40.0%
! CATCAAACTCTGAGAGATCA+TGG + chr3_3:69393807-69393826 None:intergenic 40.0%
GTCTTTCAGATCACAATGCA+AGG - chr3_3:69393851-69393870 Msa0467910:intron 40.0%
GGATTCAATTTCACTGCTTC+AGG + chr3_3:69393892-69393911 None:intergenic 40.0%
!! GCTAATTGATCTTTTAGGGG+AGG + chr3_3:69393959-69393978 None:intergenic 40.0%
! TGTTTCTCGTTTGGGATGAA+TGG - chr3_3:69394012-69394031 Msa0467910:five_prime_UTR 40.0%
ATATTCATTCTGCAGATGGG+AGG - chr3_3:69394383-69394402 Msa0467910:five_prime_UTR 40.0%
ATGCTATCTGATGATTCCAG+TGG - chr3_3:69394538-69394557 Msa0467910:five_prime_UTR 40.0%
TTTGGATATAAAGTGGCCAC+TGG + chr3_3:69394557-69394576 None:intergenic 40.0%
! AGTGGCCACTTTATATCCAA+AGG - chr3_3:69394556-69394575 Msa0467910:five_prime_UTR 40.0%
AATCTTGGTTCCTTTGCCTT+TGG + chr3_3:69394575-69394594 None:intergenic 40.0%
TGTAGCATTTGGATCAGACA+AGG + chr3_3:69394813-69394832 None:intergenic 40.0%
CTCTTCTGTCAACCAATTCA+TGG - chr3_3:69394855-69394874 Msa0467910:five_prime_UTR 40.0%
CTTCTGTCAACCAATTCATG+GGG - chr3_3:69394857-69394876 Msa0467910:five_prime_UTR 40.0%
ATCATATGGACCCCATGAAT+TGG + chr3_3:69394870-69394889 None:intergenic 40.0%
CAAGGGAAACTTGACTCATA+GGG + chr3_3:69395085-69395104 None:intergenic 40.0%
ATCACAGCAATGTCAGGAGT+CGG + chr3_3:69392266-69392285 None:intergenic 45.0%
! GTAGTGCATGTTTGGATTGG+AGG - chr3_3:69392338-69392357 Msa0467910:intron 45.0%
CATTAGTAGGGTTCAGGGAT+TGG - chr3_3:69392585-69392604 Msa0467910:intron 45.0%
TAATTCTTTGGTTGGAGGGG+TGG - chr3_3:69392635-69392654 Msa0467910:intron 45.0%
CAAAAGCAGCAGAAACTCAC+AGG - chr3_3:69393119-69393138 Msa0467910:CDS 45.0%
!! GTTGGGATGTTGATTCCATC+TGG - chr3_3:69393187-69393206 Msa0467910:CDS 45.0%
TTGATTCCATCTGGTGGTAG+TGG - chr3_3:69393196-69393215 Msa0467910:CDS 45.0%
TAATGCATGCTTCATCCTCG+AGG - chr3_3:69393236-69393255 Msa0467910:CDS 45.0%
TTCTTACCGGTGGAATTGTC+TGG + chr3_3:69393337-69393356 None:intergenic 45.0%
AGACGATTCTTTCTTACCGG+TGG + chr3_3:69393347-69393366 None:intergenic 45.0%
GCTGCTGGAGAAGTTTCAAT+TGG + chr3_3:69393379-69393398 None:intergenic 45.0%
! CCAAGCTTTAGTGTGAGCAA+TGG + chr3_3:69393406-69393425 None:intergenic 45.0%
CCATTGCTCACACTAAAGCT+TGG - chr3_3:69393403-69393422 Msa0467910:CDS 45.0%
! TCTGCAGTTCCTCTTTTGTG+CGG - chr3_3:69393484-69393503 Msa0467910:CDS 45.0%
CCTTTCTTTCCGCACAAAAG+AGG + chr3_3:69393496-69393515 None:intergenic 45.0%
! CCTCTTTTGTGCGGAAAGAA+AGG - chr3_3:69393493-69393512 Msa0467910:CDS 45.0%
! GATTTTGCCAGCAATGTAGC+AGG - chr3_3:69393668-69393687 Msa0467910:intron 45.0%
AATTTCACTGCTTCAGGCTG+AGG + chr3_3:69393886-69393905 None:intergenic 45.0%
TTGACAGAAGAGAGAGAGCA+CGG + chr3_3:69394847-69394866 None:intergenic 45.0%
TGTCCGATTGGAGTGTATGA+GGG + chr3_3:69394906-69394925 None:intergenic 45.0%
TTGTCCGATTGGAGTGTATG+AGG + chr3_3:69394907-69394926 None:intergenic 45.0%
ATACACTCCAATCGGACAAC+CGG - chr3_3:69394908-69394927 Msa0467910:five_prime_UTR 45.0%
TTGGCACACTGATCAACATC+AGG - chr3_3:69394982-69395001 Msa0467910:five_prime_UTR 45.0%
GCAAGGGAAACTTGACTCAT+AGG + chr3_3:69395086-69395105 None:intergenic 45.0%
! TGCATGTTTGGATTGGAGGG+TGG - chr3_3:69392342-69392361 Msa0467910:intron 50.0%
! GCATGTTTGGATTGGAGGGT+GGG - chr3_3:69392343-69392362 Msa0467910:intron 50.0%
GCATTTGCATAGGTGCTAGC+AGG - chr3_3:69392689-69392708 Msa0467910:CDS 50.0%
TGTGAGGACTTGTCATGGAG+TGG - chr3_3:69393044-69393063 Msa0467910:CDS 50.0%
GAGTGGAACGTGAAATCTCC+CGG - chr3_3:69393061-69393080 Msa0467910:CDS 50.0%
AGTGGAACGTGAAATCTCCC+GGG - chr3_3:69393062-69393081 Msa0467910:CDS 50.0%
!! GGGATGTTGATTCCATCTGG+TGG - chr3_3:69393190-69393209 Msa0467910:CDS 50.0%
GAATAGCCACTACCACCAGA+TGG + chr3_3:69393205-69393224 None:intergenic 50.0%
! AGCAGATTTTGAGCTCCTCG+AGG + chr3_3:69393254-69393273 None:intergenic 50.0%
GGTTCTCCAGACAATTCCAC+CGG - chr3_3:69393328-69393347 Msa0467910:CDS 50.0%
TGCAGAGGAAGAGGCTTTCT+TGG + chr3_3:69393470-69393489 None:intergenic 50.0%
AAGAGGAACTGCAGAGGAAG+AGG + chr3_3:69393479-69393498 None:intergenic 50.0%
GCACAAAAGAGGAACTGCAG+AGG + chr3_3:69393485-69393504 None:intergenic 50.0%
CATGCTAAATCCAAGCTGCC+AGG - chr3_3:69393534-69393553 Msa0467910:five_prime_UTR 50.0%
CTTTAGCCAAAGAGAGGTCG+AGG + chr3_3:69393573-69393592 None:intergenic 50.0%
CAGTCATTCCAAATCGCCTG+TGG - chr3_3:69393621-69393640 Msa0467910:intron 50.0%
TCATTCCAAATCGCCTGTGG+TGG - chr3_3:69393624-69393643 Msa0467910:intron 50.0%
TACTACCACCACAGGCGATT+TGG + chr3_3:69393632-69393651 None:intergenic 50.0%
AAACCAGCTACTACCACCAC+AGG + chr3_3:69393640-69393659 None:intergenic 50.0%
TGTGGTGGTAGTAGCTGGTT+TGG - chr3_3:69393639-69393658 Msa0467910:intron 50.0%
ACATGCACCTGCTACATTGC+TGG + chr3_3:69393678-69393697 None:intergenic 50.0%
ACAACCTGGGACAGCAATCT+TGG + chr3_3:69394590-69394609 None:intergenic 50.0%
ATTGGAGTGTATGAGGGAGG+GGG + chr3_3:69394900-69394919 None:intergenic 50.0%
GATTGGAGTGTATGAGGGAG+GGG + chr3_3:69394901-69394920 None:intergenic 50.0%
CGATTGGAGTGTATGAGGGA+GGG + chr3_3:69394902-69394921 None:intergenic 50.0%
CCTCCCTCATACACTCCAAT+CGG - chr3_3:69394900-69394919 Msa0467910:five_prime_UTR 50.0%
CTGAGCAGTTGCATACTGAG+GGG + chr3_3:69394936-69394955 None:intergenic 50.0%
GCTGAGCAGTTGCATACTGA+GGG + chr3_3:69394937-69394956 None:intergenic 50.0%
GTAACCCGAGAACGAGATAC+AGG + chr3_3:69395020-69395039 None:intergenic 50.0%
AAGTTTCCCTTGCAACCAGC+TGG - chr3_3:69395093-69395112 Msa0467910:five_prime_UTR 50.0%
! TGTTTGGATTGGAGGGTGGG+TGG - chr3_3:69392346-69392365 Msa0467910:intron 55.0%
ACGTGAAATCTCCCGGGCAA+TGG - chr3_3:69393068-69393087 Msa0467910:CDS 55.0%
CGTGAAATCTCCCGGGCAAT+GGG - chr3_3:69393069-69393088 Msa0467910:CDS 55.0%
! TTTTCCCAGTCCCATTGCCC+GGG + chr3_3:69393082-69393101 None:intergenic 55.0%
! GTTTTCCCAGTCCCATTGCC+CGG + chr3_3:69393083-69393102 None:intergenic 55.0%
! GTGAGCAATGGTTCTGCTGC+TGG + chr3_3:69393394-69393413 None:intergenic 55.0%
GCTAAATCCAAGCTGCCAGG+TGG - chr3_3:69393537-69393556 Msa0467910:five_prime_UTR 55.0%
AATCCAAGCTGCCAGGTGGA+AGG - chr3_3:69393541-69393560 Msa0467910:five_prime_UTR 55.0%
TTGTGGCCTCGACCTCTCTT+TGG - chr3_3:69393564-69393583 Msa0467910:intron 55.0%
TGCAGATGGGAGGCAGACAA+TGG - chr3_3:69394393-69394412 Msa0467910:five_prime_UTR 55.0%
GCAGATGGGAGGCAGACAAT+GGG - chr3_3:69394394-69394413 Msa0467910:five_prime_UTR 55.0%
!! AGCTTGCTGTTGGGCATGTC+TGG + chr3_3:69394460-69394479 None:intergenic 55.0%
!! GTTTGGGGGAGCTTGCTGTT+GGG + chr3_3:69394469-69394488 None:intergenic 55.0%
GGAACCAAGATTGCTGTCCC+AGG - chr3_3:69394583-69394602 Msa0467910:five_prime_UTR 55.0%
! GAGGGGGGCTTGGTATCATA+TGG + chr3_3:69394884-69394903 None:intergenic 55.0%
TTGGAGTGTATGAGGGAGGG+GGG + chr3_3:69394899-69394918 None:intergenic 55.0%
CCGATTGGAGTGTATGAGGG+AGG + chr3_3:69394903-69394922 None:intergenic 55.0%
! AGTTGCATACTGAGGGGTGC+CGG + chr3_3:69394930-69394949 None:intergenic 55.0%
CGCTGAGCAGTTGCATACTG+AGG + chr3_3:69394938-69394957 None:intergenic 55.0%
!! GCGCTCACCTTTTTCGTCAC+TGG - chr3_3:69394955-69394974 Msa0467910:five_prime_UTR 55.0%
CAGCGCCTGTATCTCGTTCT+CGG - chr3_3:69395012-69395031 Msa0467910:five_prime_UTR 55.0%
AGCGCCTGTATCTCGTTCTC+GGG - chr3_3:69395013-69395032 Msa0467910:five_prime_UTR 55.0%
AATCTCCCGGGCAATGGGAC+TGG - chr3_3:69393074-69393093 Msa0467910:CDS 60.0%
ATCTCCCGGGCAATGGGACT+GGG - chr3_3:69393075-69393094 Msa0467910:CDS 60.0%
CAACCTTCCACCTGGCAGCT+TGG + chr3_3:69393547-69393566 None:intergenic 60.0%
AGCTGCCAGGTGGAAGGTTG+TGG - chr3_3:69393547-69393566 Msa0467910:intron 60.0%
TCGCCTGTGGTGGTAGTAGC+TGG - chr3_3:69393634-69393653 Msa0467910:intron 60.0%
GGGGACGAAGAGAGAGCTGA+TGG + chr3_3:69393913-69393932 None:intergenic 60.0%
GCTCTCTCTTCGTCCCCCTA+TGG - chr3_3:69393916-69393935 Msa0467910:intron 60.0%
!! GGTTTGGGGGAGCTTGCTGT+TGG + chr3_3:69394470-69394489 None:intergenic 60.0%
CGAGAACGAGATACAGGCGC+TGG + chr3_3:69395014-69395033 None:intergenic 60.0%
CGAGGCCACAACCTTCCACC+TGG + chr3_3:69393555-69393574 None:intergenic 65.0%
GTGTATGAGGGAGGGGGGCT+TGG + chr3_3:69394894-69394913 None:intergenic 65.0%
!! AGGGGTGCCGGTTGTCCGAT+TGG + chr3_3:69394918-69394937 None:intergenic 65.0%
!! CGAGATACAGGCGCTGGAGC+TGG + chr3_3:69395008-69395027 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69391454 69395120 69391454 ID=Msa0467910;Name=Msa0467910
chr3_3 mRNA 69391454 69395120 69391454 ID=Msa0467910-mRNA-1;Parent=Msa0467910;Name=Msa0467910-mRNA-1;_AED=0.12;_eAED=0.12;_QI=1164|0.75|0.8|1|0.75|0.6|5|0|447
chr3_3 exon 69391454 69391821 69391454 ID=Msa0467910-mRNA-1:exon:16453;Parent=Msa0467910-mRNA-1
chr3_3 exon 69391970 69392176 69391970 ID=Msa0467910-mRNA-1:exon:16452;Parent=Msa0467910-mRNA-1
chr3_3 exon 69392637 69392773 69392637 ID=Msa0467910-mRNA-1:exon:16451;Parent=Msa0467910-mRNA-1
chr3_3 exon 69392885 69393561 69392885 ID=Msa0467910-mRNA-1:exon:16450;Parent=Msa0467910-mRNA-1
chr3_3 exon 69394002 69395120 69394002 ID=Msa0467910-mRNA-1:exon:16449;Parent=Msa0467910-mRNA-1
chr3_3 five_prime_UTR 69394002 69395120 69394002 ID=Msa0467910-mRNA-1:five_prime_utr;Parent=Msa0467910-mRNA-1
chr3_3 five_prime_UTR 69393517 69393561 69393517 ID=Msa0467910-mRNA-1:five_prime_utr;Parent=Msa0467910-mRNA-1
chr3_3 CDS 69392885 69393516 69392885 ID=Msa0467910-mRNA-1:cds;Parent=Msa0467910-mRNA-1
chr3_3 CDS 69392637 69392773 69392637 ID=Msa0467910-mRNA-1:cds;Parent=Msa0467910-mRNA-1
chr3_3 CDS 69391970 69392176 69391970 ID=Msa0467910-mRNA-1:cds;Parent=Msa0467910-mRNA-1
chr3_3 CDS 69391454 69391821 69391454 ID=Msa0467910-mRNA-1:cds;Parent=Msa0467910-mRNA-1
Gene Sequence

>Msa0467910

ATGGAGTGGAACGTGAAATCTCCCGGGCAATGGGACTGGGAAAACTTATTCTTCTCGAATTCAAAAGCAGCAGAAACTCACAGGTTACAATCTACTGATTGGAGTATGGAGGAAGATCGAGAAATCAATGTTGGGATGTTGATTCCATCTGGTGGTAGTGGCTATTCAGTGTCTAAACTAATGCATGCTTCATCCTCGAGGAGCTCAAAATCTGCTTCGAATAATTCATCATCAAATGAGGACAGCAAGACATCAATGTTAACTCAAGAAGGTTCTCCAGACAATTCCACCGGTAAGAAAGAATCGTCTAAAGGAGATCCAATTGAAACTTCTCCAGCAGCAGAACCATTGCTCACACTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTAGCACTGGAAGTCATTCCAAGAAAGCCTCTTCCTCTGCAGTTCCTCTTTTGTGCGGAAAGAAAGGTAAATCGAGCAGTCAGAACATGCTAAATCCAAGCTGCCAGGTGGAAGGTTGTGGCCTCGACCTCTCTTTGGCTAAAGATTACCATCGGAAACATAGAATTTGTGACAGTCATTCCAAATCGCCTGTGGTGGTAGTAGCTGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTCTCAGAGTTTGATGATAAAAAAAGAAGCTGCAGACGCCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTGAAATTGAATCCATCAGCTCTCTCTTCGTCCCCCTATGATGGGAGGCAGACAATGGGCCCATTTGCTTTTCCAAAGAATACTTCAAATTTAGCATGGCCAGACATGCCCAACAGCAAGCTCCCCCAAACCAAAGATTTTATGCTCAAAACTCCAAAAAACTTCAGCAAGTTTGTCACTATGCTATCTGATGATTCCAGTGGCCACTTTATATCCAAAGGCAAAGGAACCAAGATTGCTGTCCCAGAAACAACTGTTATTCACATTGATAGAATACATATTACAGGTCTAGAAGATCCAAATACCTTGTCTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTCCATATGATACCAAGCCCCCCTCCCTCATACACTCCAATCGGACAACCGGCACCCCTCAGTATGCAACTGCTCAGCGCTCACCTTTTTCGTCACTGGAATATTGGCACACTGATCAACATCAGGCCAGCTCCAGCGCCTGTATCTCGTTCTCGGGTTACGACAATAGCAATCGCTTTCAAGACTTTCAGCTGTTCAGCGAACCCTATGAGTCAAGTTTCCCTTGCAACCAGCTGGATTAA
Protein sequence

>Msa0467910

MEWNVKSPGQWDWENLFFSNSKAAETHRLQSTDWSMEEDREINVGMLIPSGGSGYSVSKLMHASSSRSSKSASNNSSSNEDSKTSMLTQEGSPDNSTGKKESSKGDPIETSPAAEPLLTLKLGKRFYFEDVSTGSHSKKASSSAVPLLCGKKGKSSSQNMLNPSCQVEGCGLDLSLAKDYHRKHRICDSHSKSPVVVVAGLERRFCQQCSRFHDLSEFDDKKRSCRRRLSDHNARRRKPQPEAVKLNPSALSSSPYDGRQTMGPFAFPKNTSNLAWPDMPNSKLPQTKDFMLKTPKNFSKFVTMLSDDSSGHFISKGKGTKIAVPETTVIHIDRIHITGLEDPNTLSDPNATQDVNRALSLLSTNSWGPYDTKPPSLIHSNRTTGTPQYATAQRSPFSSLEYWHTDQHQASSSACISFSGYDNSNRFQDFQLFSEPYESSFPCNQLD*