AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467950 MtrunA17_Chr3g0122411 91.979 374 12 1 1 356 61 434 0.0 700
Msa0467950 MtrunA17_Chr8g0377421 55.856 222 73 3 53 249 76 297 2.28e-71 224
Msa0467950 MtrunA17_Chr8g0377401 62.914 151 43 3 22 159 84 234 2.20e-51 171
Msa0467950 MtrunA17_Chr7g0258471 36.462 277 111 7 60 296 91 342 7.13e-41 148
Msa0467950 MtrunA17_Chr7g0231911 47.205 161 63 4 33 171 73 233 5.70e-38 138
Msa0467950 MtrunA17_Chr8g0360361 70.000 80 24 0 85 164 63 142 1.33e-36 130
Msa0467950 MtrunA17_Chr3g0132091 52.586 116 53 2 83 198 69 182 2.98e-36 134
Msa0467950 MtrunA17_Chr5g0420051 45.087 173 69 4 13 162 87 256 3.10e-36 136
Msa0467950 MtrunA17_Chr4g0046991 63.953 86 31 0 75 160 61 146 1.17e-34 124
Msa0467950 MtrunA17_Chr8g0334671 49.007 151 46 3 58 183 147 291 1.24e-34 129
Msa0467950 MtrunA17_Chr4g0061651 66.250 80 27 0 83 162 119 198 1.99e-33 129
Msa0467950 MtrunA17_Chr7g0224821 59.341 91 34 1 76 166 69 156 2.11e-33 127
Msa0467950 MtrunA17_Chr8g0386271 56.311 103 42 2 86 188 98 197 4.20e-33 127
Msa0467950 MtrunA17_Chr2g0282521 52.475 101 48 0 64 164 41 141 1.56e-32 119
Msa0467950 MtrunA17_Chr2g0308321 67.105 76 25 0 87 162 171 246 2.38e-31 124
Msa0467950 MtrunA17_Chr8g0377391 46.296 162 63 5 184 321 1 162 1.50e-29 111
Msa0467950 MtrunA17_Chr2g0302791 41.772 158 82 4 19 169 67 221 1.93e-29 119
Msa0467950 MtrunA17_Chr1g0194121 63.750 80 29 0 87 166 147 226 3.07e-29 119
Msa0467950 MtrunA17_Chr1g0162871 58.621 87 36 0 85 171 102 188 4.47e-29 118
Msa0467950 MtrunA17_Chr8g0377431 53.043 115 32 3 47 140 91 204 1.02e-28 110
Msa0467950 MtrunA17_Chr7g0270541 50.893 112 52 1 58 166 113 224 4.28e-27 112
Msa0467950 MtrunA17_Chr2g0286661 54.054 74 34 0 87 160 103 176 1.31e-21 96.3
Msa0467950 MtrunA17_Chr1g0175031 46.602 103 31 2 55 133 18 120 3.35e-19 82.8
Msa0467950 MtrunA17_Chr2g0317041 64.000 50 18 0 84 133 96 145 5.71e-19 82.8
Msa0467950 MtrunA17_Chr8g0377411 50.000 98 41 3 255 347 3 97 5.30e-14 67.4
Msa0467950 MtrunA17_Chr1g0175021 35.220 159 96 3 134 290 8 161 6.75e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467950 AT5G43270.3 43.636 275 94 10 41 276 96 348 2.44e-50 174
Msa0467950 AT5G43270.1 43.636 275 94 10 41 276 96 348 2.44e-50 174
Msa0467950 AT5G43270.2 43.636 275 94 10 41 276 96 348 2.44e-50 174
Msa0467950 AT1G27360.2 39.116 294 134 10 21 275 84 371 5.77e-44 156
Msa0467950 AT1G27360.1 39.116 294 134 10 21 275 84 371 5.77e-44 156
Msa0467950 AT1G27360.3 39.116 294 134 10 21 275 84 371 5.77e-44 156
Msa0467950 AT1G27360.4 39.116 294 134 10 21 275 84 371 5.77e-44 156
Msa0467950 AT1G27370.6 59.848 132 31 2 53 162 120 251 6.66e-44 155
Msa0467950 AT1G27370.1 59.848 132 31 2 53 162 120 251 2.88e-43 154
Msa0467950 AT1G27370.5 59.848 132 31 2 53 162 120 251 2.88e-43 154
Msa0467950 AT1G27370.3 59.848 132 31 2 53 162 120 251 2.88e-43 154
Msa0467950 AT1G27370.2 59.848 132 31 2 53 162 120 251 2.88e-43 154
Msa0467950 AT1G27370.4 59.848 132 31 2 53 162 120 251 2.88e-43 154
Msa0467950 AT1G27370.7 59.848 132 31 2 53 162 120 251 2.88e-43 154
Msa0467950 AT2G42200.1 39.918 243 111 9 60 280 32 261 1.59e-37 139
Msa0467950 AT3G57920.1 58.036 112 36 2 60 163 27 135 1.20e-36 135
Msa0467950 AT1G69170.1 68.182 88 26 1 76 161 111 198 1.91e-35 134
Msa0467950 AT1G02065.1 53.043 115 42 2 58 160 147 261 2.60e-33 126
Msa0467950 AT5G50570.1 60.976 82 32 0 85 166 99 180 4.12e-32 124
Msa0467950 AT5G50570.2 60.976 82 32 0 85 166 99 180 4.12e-32 124
Msa0467950 AT5G50670.1 60.976 82 32 0 85 166 99 180 4.12e-32 124
Msa0467950 AT5G50670.2 60.976 82 32 0 85 166 99 180 4.12e-32 124
Msa0467950 AT1G76580.2 60.674 89 35 0 85 173 112 200 4.74e-31 124
Msa0467950 AT1G76580.3 60.674 89 35 0 85 173 112 200 5.68e-31 124
Msa0467950 AT1G76580.1 60.674 89 35 0 85 173 112 200 8.71e-31 124
Msa0467950 AT2G33810.1 64.865 74 26 0 87 160 54 127 1.10e-30 114
Msa0467950 AT3G60030.1 61.250 80 31 0 87 166 127 206 5.99e-30 121
Msa0467950 AT2G47070.1 60.215 93 36 1 87 178 106 198 2.40e-29 119
Msa0467950 AT1G53160.3 44.444 117 57 1 87 195 54 170 3.31e-29 111
Msa0467950 AT1G53160.2 45.385 130 56 4 87 210 54 174 4.33e-29 110
Msa0467950 AT1G53160.1 45.385 130 56 4 87 210 54 174 4.33e-29 110
Msa0467950 AT3G15270.1 60.811 74 29 0 87 160 63 136 1.59e-28 109
Msa0467950 AT1G20980.1 63.855 83 29 1 85 166 118 200 1.87e-28 117
Msa0467950 AT1G02065.2 46.067 89 36 2 58 134 147 235 7.06e-19 85.1
Msa0467950 AT5G18830.3 51.316 76 36 1 87 161 138 213 2.57e-18 87.0
Msa0467950 AT5G18830.2 51.316 76 36 1 87 161 138 213 2.70e-18 86.7
Msa0467950 AT5G18830.1 51.316 76 36 1 87 161 138 213 2.77e-18 86.7
Msa0467950 AT2G47070.2 60.294 68 26 1 112 178 2 69 9.63e-17 82.0

Find 111 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGATCAGACAAGGTATT+TGG 0.193506 3_3:-69449228 None:intergenic
GCTAATTTATTCACATTATC+TGG 0.204082 3_3:+69449841 Msa0467950:three_prime_UTR
GCTAAATTTGAAGTATTCTT+TGG 0.209568 3_3:-69448855 None:intergenic
AGCTTGCTGTTGGGCATGTC+TGG 0.241731 3_3:-69448882 None:intergenic
AATGAGTATGCTTATTTATA+TGG 0.255740 3_3:+69449575 Msa0467950:three_prime_UTR
GCAATAAGCTATTTAGAAAA+TGG 0.260920 3_3:-69449724 None:intergenic
GGATTCAATTTCACTGCTTC+AGG 0.274502 3_3:-69448314 None:intergenic
GAGCATAAAATCTTTGGTTT+GGG 0.292731 3_3:-69448907 None:intergenic
CTACATTGCAAAAGATAATT+AGG 0.302290 3_3:-69449641 None:intergenic
TTTAGACGATTCTTTCTTAC+CGG 0.323854 3_3:-69447772 None:intergenic
TGAGCATAAAATCTTTGGTT+TGG 0.329729 3_3:-69448908 None:intergenic
TCATTAGCTCAGTATCATAA+TGG 0.345492 3_3:-69449606 None:intergenic
TTAACATCTTGTGTAGCATT+TGG 0.347549 3_3:-69449246 None:intergenic
CATTAGCTCAGTATCATAAT+GGG 0.347846 3_3:-69449605 None:intergenic
GCAAGGGAAACTTGACTCAT+AGG 0.354069 3_3:-69449508 None:intergenic
AATCTTGGTTCCTTTGCCTT+TGG 0.356006 3_3:-69448997 None:intergenic
TTGTGGCCTCGACCTCTCTT+TGG 0.373974 3_3:+69447989 Msa0467950:CDS
CTCTTCTGTCAACCAATTCA+TGG 0.377885 3_3:+69449280 Msa0467950:CDS
TACTACCACCACAGGCGATT+TGG 0.381836 3_3:-69448054 None:intergenic
TTCTTACCGGTGGAATTGTC+TGG 0.385894 3_3:-69447759 None:intergenic
ACATGCACCTGCTACATTGC+TGG 0.389565 3_3:-69448100 None:intergenic
GCTGCTGGAGAAGTTTCAAT+TGG 0.402606 3_3:-69447801 None:intergenic
AGCTGCCAGGTGGAAGGTTG+TGG 0.411491 3_3:+69447972 Msa0467950:CDS
CAGCGCCTGTATCTCGTTCT+CGG 0.419065 3_3:+69449437 Msa0467950:CDS
AATTTCACTGCTTCAGGCTG+AGG 0.421915 3_3:-69448308 None:intergenic
CAATATTCCAGTGACGAAAA+AGG 0.427818 3_3:-69449387 None:intergenic
GTGAGCAATGGTTCTGCTGC+TGG 0.432022 3_3:-69447816 None:intergenic
GTATTCTTTGGAAAAGCAAA+TGG 0.434089 3_3:-69448843 None:intergenic
ACAACCTGGGACAGCAATCT+TGG 0.439368 3_3:-69449012 None:intergenic
AAGTTTCCCTTGCAACCAGC+TGG 0.440887 3_3:+69449518 Msa0467950:CDS
TGGAAGGTGGAAGACATTCA+TGG 0.445689 3_3:-69449782 None:intergenic
ATACACTCCAATCGGACAAC+CGG 0.451604 3_3:+69449333 Msa0467950:CDS
TACTTTGAGGATGTTAGCAC+TGG 0.451656 3_3:+69447861 Msa0467950:CDS
TCTTCTGTCAACCAATTCAT+GGG 0.452114 3_3:+69449281 Msa0467950:CDS
CGAGATACAGGCGCTGGAGC+TGG 0.455430 3_3:-69449430 None:intergenic
CTCAGTATCATAATGGGGTT+GGG 0.456289 3_3:-69449599 None:intergenic
CATCAAACTCTGAGAGATCA+TGG 0.461380 3_3:-69448229 None:intergenic
CAACCTTCCACCTGGCAGCT+TGG 0.467365 3_3:-69447969 None:intergenic
TCGCCTGTGGTGGTAGTAGC+TGG 0.470263 3_3:+69448059 Msa0467950:CDS
TGGTAAAAGATTCTACTTTG+AGG 0.477123 3_3:+69447848 Msa0467950:CDS
AGGGGTGCCGGTTGTCCGAT+TGG 0.477616 3_3:-69449340 None:intergenic
TGTGGTGGTAGTAGCTGGTT+TGG 0.481417 3_3:+69448064 Msa0467950:CDS
GCTCAGTATCATAATGGGGT+TGG 0.481749 3_3:-69449600 None:intergenic
TTGCTGAAAATAAAAGTCTC+GGG 0.490396 3_3:-69449758 None:intergenic
ATCATATGGACCCCATGAAT+TGG 0.492799 3_3:-69449292 None:intergenic
TTGTCCGATTGGAGTGTATG+AGG 0.494492 3_3:-69449329 None:intergenic
AGCATACTCATTAATCCAGC+TGG 0.497222 3_3:-69449533 None:intergenic
GATTGGAGTGTATGAGGGAG+GGG 0.501793 3_3:-69449323 None:intergenic
CTTTGCCTTTGGATATAAAG+TGG 0.501899 3_3:-69448986 None:intergenic
CATTAATCCAGCTGGTTGCA+AGG 0.507260 3_3:-69449525 None:intergenic
CACAAATTCTATGTTTCCGA+TGG 0.510237 3_3:-69448022 None:intergenic
CAAGGGAAACTTGACTCATA+GGG 0.517421 3_3:-69449507 None:intergenic
TTTGCTGAAAATAAAAGTCT+CGG 0.520022 3_3:-69449759 None:intergenic
TTGAAATGTTGAAACTTGGT+TGG 0.527989 3_3:+69449889 Msa0467950:three_prime_UTR
CATGCTAAATCCAAGCTGCC+AGG 0.528294 3_3:+69447959 Msa0467950:CDS
GTAACCCGAGAACGAGATAC+AGG 0.528459 3_3:-69449442 None:intergenic
CGATTGGAGTGTATGAGGGA+GGG 0.531040 3_3:-69449324 None:intergenic
TGCAGATGGGAGGCAGACAA+TGG 0.534432 3_3:+69448818 Msa0467950:intron
CCTCCCTCATACACTCCAAT+CGG 0.535964 3_3:+69449325 Msa0467950:CDS
TATTCTTTGGAAAAGCAAAT+GGG 0.538218 3_3:-69448842 None:intergenic
AGCGCCTGTATCTCGTTCTC+GGG 0.540985 3_3:+69449438 Msa0467950:CDS
ACATCAATGTTAACTCAAGA+AGG 0.548574 3_3:+69447732 Msa0467950:CDS
GGAACCAAGATTGCTGTCCC+AGG 0.548599 3_3:+69449008 Msa0467950:CDS
GCAGATGGGAGGCAGACAAT+GGG 0.549297 3_3:+69448819 Msa0467950:intron
GGTAAGAAAGAATCGTCTAA+AGG 0.551763 3_3:+69447774 Msa0467950:CDS
TTGGCACACTGATCAACATC+AGG 0.552387 3_3:+69449407 Msa0467950:CDS
TTTGGATATAAAGTGGCCAC+TGG 0.552682 3_3:-69448979 None:intergenic
AGTTGCATACTGAGGGGTGC+CGG 0.554723 3_3:-69449352 None:intergenic
CCAAGCTTTAGTGTGAGCAA+TGG 0.557830 3_3:-69447828 None:intergenic
GGGGACGAAGAGAGAGCTGA+TGG 0.559258 3_3:-69448335 None:intergenic
ATTGGAGTGTATGAGGGAGG+GGG 0.561383 3_3:-69449322 None:intergenic
AGAATACTTCAAATTTAGCA+TGG 0.561391 3_3:+69448859 Msa0467950:CDS
GAATAATTCATCATCAAATG+AGG 0.562543 3_3:+69447701 Msa0467950:CDS
AATGTTGAAATGTTGAAACT+TGG 0.565141 3_3:+69449885 Msa0467950:three_prime_UTR
AAAGAAATCCTCGTGGAAGG+TGG 0.567230 3_3:-69449795 None:intergenic
ATTAATCCAGCTGGTTGCAA+GGG 0.568989 3_3:-69449524 None:intergenic
CGCTGAGCAGTTGCATACTG+AGG 0.570454 3_3:-69449360 None:intergenic
AATCCAAGCTGCCAGGTGGA+AGG 0.571632 3_3:+69447966 Msa0467950:CDS
CTTTAGCCAAAGAGAGGTCG+AGG 0.573405 3_3:-69447995 None:intergenic
CGAGGCCACAACCTTCCACC+TGG 0.580184 3_3:-69447977 None:intergenic
CTTGAGATTTATACCATAGG+GGG 0.580458 3_3:-69448354 None:intergenic
AGACGATTCTTTCTTACCGG+TGG 0.582162 3_3:-69447769 None:intergenic
AGTGGCCACTTTATATCCAA+AGG 0.587042 3_3:+69448981 Msa0467950:CDS
CCATTGCTCACACTAAAGCT+TGG 0.588106 3_3:+69447828 Msa0467950:CDS
CTTTGGCTAAAGATTACCAT+CGG 0.588534 3_3:+69448006 Msa0467950:CDS
TGTCCGATTGGAGTGTATGA+GGG 0.588850 3_3:-69449328 None:intergenic
GTCTTTCAGATCACAATGCA+AGG 0.591028 3_3:+69448276 Msa0467950:CDS
GCATAAAATCTTTGGTTTGG+GGG 0.594228 3_3:-69448905 None:intergenic
GCTGAGCAGTTGCATACTGA+GGG 0.602329 3_3:-69449359 None:intergenic
TTGACAGAAGAGAGAGAGCA+CGG 0.603893 3_3:-69449269 None:intergenic
AGCATAAAATCTTTGGTTTG+GGG 0.604215 3_3:-69448906 None:intergenic
CCGATTGGAGTGTATGAGGG+AGG 0.604444 3_3:-69449325 None:intergenic
CACTTTATATCCAAAGGCAA+AGG 0.613225 3_3:+69448987 Msa0467950:CDS
CGAGAACGAGATACAGGCGC+TGG 0.614056 3_3:-69449436 None:intergenic
AAACCAGCTACTACCACCAC+AGG 0.617364 3_3:-69448062 None:intergenic
TTGCATTGTGATCTGAAAGA+CGG 0.621589 3_3:-69448274 None:intergenic
TCATTCCAAATCGCCTGTGG+TGG 0.632811 3_3:+69448049 Msa0467950:CDS
CTTCTGTCAACCAATTCATG+GGG 0.634971 3_3:+69449282 Msa0467950:CDS
TTGGAGTGTATGAGGGAGGG+GGG 0.645515 3_3:-69449321 None:intergenic
CAGTCATTCCAAATCGCCTG+TGG 0.648152 3_3:+69448046 Msa0467950:CDS
TGTAGCATTTGGATCAGACA+AGG 0.648361 3_3:-69449235 None:intergenic
ATATTCATTCTGCAGATGGG+AGG 0.649420 3_3:+69448808 Msa0467950:intron
GGTTCTCCAGACAATTCCAC+CGG 0.652614 3_3:+69447753 Msa0467950:CDS
TCTTGAGATTTATACCATAG+GGG 0.653113 3_3:-69448355 None:intergenic
GGTAATCTTTAGCCAAAGAG+AGG 0.662641 3_3:-69448001 None:intergenic
CTGAGCAGTTGCATACTGAG+GGG 0.662729 3_3:-69449358 None:intergenic
GCTAAATCCAAGCTGCCAGG+TGG 0.663879 3_3:+69447962 Msa0467950:CDS
ATGCTATCTGATGATTCCAG+TGG 0.666446 3_3:+69448963 Msa0467950:CDS
TAATGCATGCTTCATCCTCG+AGG 0.674783 3_3:+69447661 None:intergenic
ATTAGCTCAGTATCATAATG+GGG 0.688180 3_3:-69449604 None:intergenic
AATGTCTTCCACCTTCCACG+AGG 0.710618 3_3:+69449787 Msa0467950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACACTTAATATTTTCTTATA+AGG - chr3_3:69448696-69448715 None:intergenic 15.0%
!!! ATTAAATTTAGTTTGTTCAA+TGG + chr3_3:69449076-69449095 Msa0467950:intron 15.0%
!!! ACACTTAATATTTTCTTATA+AGG - chr3_3:69448696-69448715 None:intergenic 15.0%
!!! ATTAAATTTAGTTTGTTCAA+TGG + chr3_3:69449076-69449095 Msa0467950:intron 15.0%
!!! TTGGGTTGTTTAAAATAAAT+TGG + chr3_3:69448170-69448189 Msa0467950:intron 20.0%
!!! AACTTAAACTATGATTTTGA+AGG + chr3_3:69448204-69448223 Msa0467950:intron 20.0%
!! TTATGAGAGAATTATAAGAA+TGG + chr3_3:69448476-69448495 Msa0467950:intron 20.0%
!!! TTAGAATTTCTTTTGAGAAA+TGG - chr3_3:69448516-69448535 None:intergenic 20.0%
!!! TACTCTATGACTATATTTTT+GGG - chr3_3:69448622-69448641 None:intergenic 20.0%
!!! ATACTCTATGACTATATTTT+TGG - chr3_3:69448623-69448642 None:intergenic 20.0%
!! TTTAATAAGAAATCATGACT+CGG - chr3_3:69449062-69449081 None:intergenic 20.0%
!! ATTGATAGAATACATATTAC+AGG + chr3_3:69449195-69449214 Msa0467950:intron 20.0%
!! AATGAGTATGCTTATTTATA+TGG + chr3_3:69449575-69449594 Msa0467950:three_prime_UTR 20.0%
!!! TTGGGTTGTTTAAAATAAAT+TGG + chr3_3:69448170-69448189 Msa0467950:intron 20.0%
!!! AACTTAAACTATGATTTTGA+AGG + chr3_3:69448204-69448223 Msa0467950:intron 20.0%
!! TTATGAGAGAATTATAAGAA+TGG + chr3_3:69448476-69448495 Msa0467950:intron 20.0%
!!! TTAGAATTTCTTTTGAGAAA+TGG - chr3_3:69448516-69448535 None:intergenic 20.0%
!!! TACTCTATGACTATATTTTT+GGG - chr3_3:69448622-69448641 None:intergenic 20.0%
!!! ATACTCTATGACTATATTTT+TGG - chr3_3:69448623-69448642 None:intergenic 20.0%
!! TTTAATAAGAAATCATGACT+CGG - chr3_3:69449062-69449081 None:intergenic 20.0%
!! ATTGATAGAATACATATTAC+AGG + chr3_3:69449195-69449214 Msa0467950:intron 20.0%
!! AATGAGTATGCTTATTTATA+TGG + chr3_3:69449575-69449594 Msa0467950:three_prime_UTR 20.0%
! GAATAATTCATCATCAAATG+AGG + chr3_3:69447701-69447720 Msa0467950:CDS 25.0%
! TTCTTGAGATTTATACCATA+GGG - chr3_3:69448359-69448378 None:intergenic 25.0%
! ATTCTTGAGATTTATACCAT+AGG - chr3_3:69448360-69448379 None:intergenic 25.0%
! TTCAGTTTCTTTGTAAGAAA+TGG + chr3_3:69448642-69448661 Msa0467950:intron 25.0%
! TTTAATATTCATTCTGCAGA+TGG + chr3_3:69448804-69448823 Msa0467950:intron 25.0%
! TTAATATTCATTCTGCAGAT+GGG + chr3_3:69448805-69448824 Msa0467950:intron 25.0%
!! TATTCTTTGGAAAAGCAAAT+GGG - chr3_3:69448845-69448864 None:intergenic 25.0%
!! GCTAAATTTGAAGTATTCTT+TGG - chr3_3:69448858-69448877 None:intergenic 25.0%
! AGAATACTTCAAATTTAGCA+TGG + chr3_3:69448859-69448878 Msa0467950:CDS 25.0%
!!! AGTTTTGAGCATAAAATCTT+TGG - chr3_3:69448916-69448935 None:intergenic 25.0%
!!! TAACAGTTGTTTCTACAAAT+AGG - chr3_3:69449170-69449189 None:intergenic 25.0%
! CTACATTGCAAAAGATAATT+AGG - chr3_3:69449644-69449663 None:intergenic 25.0%
!! CTAATTATCTTTTGCAATGT+AGG + chr3_3:69449642-69449661 Msa0467950:three_prime_UTR 25.0%
! GCAATAAGCTATTTAGAAAA+TGG - chr3_3:69449727-69449746 None:intergenic 25.0%
! TTTGCTGAAAATAAAAGTCT+CGG - chr3_3:69449762-69449781 None:intergenic 25.0%
! GCTAATTTATTCACATTATC+TGG + chr3_3:69449841-69449860 Msa0467950:three_prime_UTR 25.0%
! AATGTTGAAATGTTGAAACT+TGG + chr3_3:69449885-69449904 Msa0467950:three_prime_UTR 25.0%
! GAATAATTCATCATCAAATG+AGG + chr3_3:69447701-69447720 Msa0467950:CDS 25.0%
! TTCTTGAGATTTATACCATA+GGG - chr3_3:69448359-69448378 None:intergenic 25.0%
! ATTCTTGAGATTTATACCAT+AGG - chr3_3:69448360-69448379 None:intergenic 25.0%
! TTCAGTTTCTTTGTAAGAAA+TGG + chr3_3:69448642-69448661 Msa0467950:intron 25.0%
! TTTAATATTCATTCTGCAGA+TGG + chr3_3:69448804-69448823 Msa0467950:intron 25.0%
! TTAATATTCATTCTGCAGAT+GGG + chr3_3:69448805-69448824 Msa0467950:intron 25.0%
!! TATTCTTTGGAAAAGCAAAT+GGG - chr3_3:69448845-69448864 None:intergenic 25.0%
!! GCTAAATTTGAAGTATTCTT+TGG - chr3_3:69448858-69448877 None:intergenic 25.0%
! AGAATACTTCAAATTTAGCA+TGG + chr3_3:69448859-69448878 Msa0467950:CDS 25.0%
!!! AGTTTTGAGCATAAAATCTT+TGG - chr3_3:69448916-69448935 None:intergenic 25.0%
!!! TAACAGTTGTTTCTACAAAT+AGG - chr3_3:69449170-69449189 None:intergenic 25.0%
! CTACATTGCAAAAGATAATT+AGG - chr3_3:69449644-69449663 None:intergenic 25.0%
!! CTAATTATCTTTTGCAATGT+AGG + chr3_3:69449642-69449661 Msa0467950:three_prime_UTR 25.0%
! GCAATAAGCTATTTAGAAAA+TGG - chr3_3:69449727-69449746 None:intergenic 25.0%
! TTTGCTGAAAATAAAAGTCT+CGG - chr3_3:69449762-69449781 None:intergenic 25.0%
! GCTAATTTATTCACATTATC+TGG + chr3_3:69449841-69449860 Msa0467950:three_prime_UTR 25.0%
! AATGTTGAAATGTTGAAACT+TGG + chr3_3:69449885-69449904 Msa0467950:three_prime_UTR 25.0%
ACATCAATGTTAACTCAAGA+AGG + chr3_3:69447732-69447751 Msa0467950:CDS 30.0%
TTTAGACGATTCTTTCTTAC+CGG - chr3_3:69447775-69447794 None:intergenic 30.0%
TGGTAAAAGATTCTACTTTG+AGG + chr3_3:69447848-69447867 Msa0467950:CDS 30.0%
! ATTGTCAATGTCATTTGCAT+TGG - chr3_3:69448135-69448154 None:intergenic 30.0%
!! AATTAGCTTCCTGTCTTTTT+GGG + chr3_3:69448152-69448171 Msa0467950:intron 30.0%
TTTAAACAACCCAAAAAGAC+AGG - chr3_3:69448164-69448183 None:intergenic 30.0%
TCTTGAGATTTATACCATAG+GGG - chr3_3:69448358-69448377 None:intergenic 30.0%
! AAGGCTAATTGATCTTTTAG+GGG - chr3_3:69448387-69448406 None:intergenic 30.0%
! CAAGGCTAATTGATCTTTTA+GGG - chr3_3:69448388-69448407 None:intergenic 30.0%
! ACAAGGCTAATTGATCTTTT+AGG - chr3_3:69448389-69448408 None:intergenic 30.0%
TAAACTAATGAAGCAAGACA+AGG - chr3_3:69448406-69448425 None:intergenic 30.0%
TGAATGGCGATATCTTAAAA+AGG + chr3_3:69448453-69448472 Msa0467950:intron 30.0%
TACAACCAATAGCATATCAA+TGG - chr3_3:69448542-69448561 None:intergenic 30.0%
! ATATGCTATTGGTTGTATGA+AGG + chr3_3:69448545-69448564 Msa0467950:intron 30.0%
! GTATTCTTTGGAAAAGCAAA+TGG - chr3_3:69448846-69448865 None:intergenic 30.0%
!! AGCATAAAATCTTTGGTTTG+GGG - chr3_3:69448909-69448928 None:intergenic 30.0%
! GAGCATAAAATCTTTGGTTT+GGG - chr3_3:69448910-69448929 None:intergenic 30.0%
TGAGCATAAAATCTTTGGTT+TGG - chr3_3:69448911-69448930 None:intergenic 30.0%
!!! ACAAACTTGCTGAAGTTTTT+TGG - chr3_3:69448939-69448958 None:intergenic 30.0%
TTAAGATTAGAGAACAACCT+GGG - chr3_3:69449028-69449047 None:intergenic 30.0%
! TTTAAGATTAGAGAACAACC+TGG - chr3_3:69449029-69449048 None:intergenic 30.0%
TGAAACATGCAATAAACTAG+AGG - chr3_3:69449128-69449147 None:intergenic 30.0%
TTAACATCTTGTGTAGCATT+TGG - chr3_3:69449249-69449268 None:intergenic 30.0%
ATTAGCTCAGTATCATAATG+GGG - chr3_3:69449607-69449626 None:intergenic 30.0%
CATTAGCTCAGTATCATAAT+GGG - chr3_3:69449608-69449627 None:intergenic 30.0%
TCATTAGCTCAGTATCATAA+TGG - chr3_3:69449609-69449628 None:intergenic 30.0%
! TGAGCTAATGATGTTTTGTA+GGG + chr3_3:69449618-69449637 Msa0467950:three_prime_UTR 30.0%
TTGCTGAAAATAAAAGTCTC+GGG - chr3_3:69449761-69449780 None:intergenic 30.0%
AGTATAAAAAGAAATCCTCG+TGG - chr3_3:69449805-69449824 None:intergenic 30.0%
TTGAAATGTTGAAACTTGGT+TGG + chr3_3:69449889-69449908 Msa0467950:three_prime_UTR 30.0%
ACATCAATGTTAACTCAAGA+AGG + chr3_3:69447732-69447751 Msa0467950:CDS 30.0%
TTTAGACGATTCTTTCTTAC+CGG - chr3_3:69447775-69447794 None:intergenic 30.0%
TGGTAAAAGATTCTACTTTG+AGG + chr3_3:69447848-69447867 Msa0467950:CDS 30.0%
! ATTGTCAATGTCATTTGCAT+TGG - chr3_3:69448135-69448154 None:intergenic 30.0%
!! AATTAGCTTCCTGTCTTTTT+GGG + chr3_3:69448152-69448171 Msa0467950:intron 30.0%
TTTAAACAACCCAAAAAGAC+AGG - chr3_3:69448164-69448183 None:intergenic 30.0%
TCTTGAGATTTATACCATAG+GGG - chr3_3:69448358-69448377 None:intergenic 30.0%
! AAGGCTAATTGATCTTTTAG+GGG - chr3_3:69448387-69448406 None:intergenic 30.0%
! CAAGGCTAATTGATCTTTTA+GGG - chr3_3:69448388-69448407 None:intergenic 30.0%
! ACAAGGCTAATTGATCTTTT+AGG - chr3_3:69448389-69448408 None:intergenic 30.0%
TAAACTAATGAAGCAAGACA+AGG - chr3_3:69448406-69448425 None:intergenic 30.0%
TGAATGGCGATATCTTAAAA+AGG + chr3_3:69448453-69448472 Msa0467950:intron 30.0%
TACAACCAATAGCATATCAA+TGG - chr3_3:69448542-69448561 None:intergenic 30.0%
! ATATGCTATTGGTTGTATGA+AGG + chr3_3:69448545-69448564 Msa0467950:intron 30.0%
! GTATTCTTTGGAAAAGCAAA+TGG - chr3_3:69448846-69448865 None:intergenic 30.0%
!! AGCATAAAATCTTTGGTTTG+GGG - chr3_3:69448909-69448928 None:intergenic 30.0%
! GAGCATAAAATCTTTGGTTT+GGG - chr3_3:69448910-69448929 None:intergenic 30.0%
TGAGCATAAAATCTTTGGTT+TGG - chr3_3:69448911-69448930 None:intergenic 30.0%
!!! ACAAACTTGCTGAAGTTTTT+TGG - chr3_3:69448939-69448958 None:intergenic 30.0%
TTAAGATTAGAGAACAACCT+GGG - chr3_3:69449028-69449047 None:intergenic 30.0%
! TTTAAGATTAGAGAACAACC+TGG - chr3_3:69449029-69449048 None:intergenic 30.0%
TGAAACATGCAATAAACTAG+AGG - chr3_3:69449128-69449147 None:intergenic 30.0%
TTAACATCTTGTGTAGCATT+TGG - chr3_3:69449249-69449268 None:intergenic 30.0%
ATTAGCTCAGTATCATAATG+GGG - chr3_3:69449607-69449626 None:intergenic 30.0%
CATTAGCTCAGTATCATAAT+GGG - chr3_3:69449608-69449627 None:intergenic 30.0%
TCATTAGCTCAGTATCATAA+TGG - chr3_3:69449609-69449628 None:intergenic 30.0%
! TGAGCTAATGATGTTTTGTA+GGG + chr3_3:69449618-69449637 Msa0467950:three_prime_UTR 30.0%
TTGCTGAAAATAAAAGTCTC+GGG - chr3_3:69449761-69449780 None:intergenic 30.0%
AGTATAAAAAGAAATCCTCG+TGG - chr3_3:69449805-69449824 None:intergenic 30.0%
TTGAAATGTTGAAACTTGGT+TGG + chr3_3:69449889-69449908 Msa0467950:three_prime_UTR 30.0%
GGTAAGAAAGAATCGTCTAA+AGG + chr3_3:69447774-69447793 Msa0467950:CDS 35.0%
CTTTGGCTAAAGATTACCAT+CGG + chr3_3:69448006-69448025 Msa0467950:CDS 35.0%
CACAAATTCTATGTTTCCGA+TGG - chr3_3:69448025-69448044 None:intergenic 35.0%
!! CAATTAGCTTCCTGTCTTTT+TGG + chr3_3:69448151-69448170 Msa0467950:intron 35.0%
TTGCATTGTGATCTGAAAGA+CGG - chr3_3:69448277-69448296 None:intergenic 35.0%
CTTGAGATTTATACCATAGG+GGG - chr3_3:69448357-69448376 None:intergenic 35.0%
!! CTAATTGATCTTTTAGGGGA+GGG - chr3_3:69448383-69448402 None:intergenic 35.0%
!!! TTGCCATTTTGTTTCTCGTT+TGG + chr3_3:69448428-69448447 Msa0467950:intron 35.0%
!!! TGCCATTTTGTTTCTCGTTT+GGG + chr3_3:69448429-69448448 Msa0467950:intron 35.0%
ATCCCAAACGAGAAACAAAA+TGG - chr3_3:69448434-69448453 None:intergenic 35.0%
AACCTCCATTGATATGCTAT+TGG + chr3_3:69448534-69448553 Msa0467950:intron 35.0%
AACCAATAGCATATCAATGG+AGG - chr3_3:69448539-69448558 None:intergenic 35.0%
!! GCATAAAATCTTTGGTTTGG+GGG - chr3_3:69448908-69448927 None:intergenic 35.0%
CTTTGCCTTTGGATATAAAG+TGG - chr3_3:69448989-69449008 None:intergenic 35.0%
CACTTTATATCCAAAGGCAA+AGG + chr3_3:69448987-69449006 Msa0467950:CDS 35.0%
! AATAAGAAATCATGACTCGG+AGG - chr3_3:69449059-69449078 None:intergenic 35.0%
!! CAGTTGTTTCTACAAATAGG+AGG - chr3_3:69449167-69449186 None:intergenic 35.0%
! TTTGGATCAGACAAGGTATT+TGG - chr3_3:69449231-69449250 None:intergenic 35.0%
TCTTCTGTCAACCAATTCAT+GGG + chr3_3:69449281-69449300 Msa0467950:CDS 35.0%
CAATATTCCAGTGACGAAAA+AGG - chr3_3:69449390-69449409 None:intergenic 35.0%
!! CTTTTTCGTCACTGGAATAT+TGG + chr3_3:69449388-69449407 Msa0467950:CDS 35.0%
! CTGAGCTAATGATGTTTTGT+AGG + chr3_3:69449617-69449636 Msa0467950:three_prime_UTR 35.0%
TAAAAAGAAATCCTCGTGGA+AGG - chr3_3:69449801-69449820 None:intergenic 35.0%
GGTAAGAAAGAATCGTCTAA+AGG + chr3_3:69447774-69447793 Msa0467950:CDS 35.0%
CTTTGGCTAAAGATTACCAT+CGG + chr3_3:69448006-69448025 Msa0467950:CDS 35.0%
CACAAATTCTATGTTTCCGA+TGG - chr3_3:69448025-69448044 None:intergenic 35.0%
!! CAATTAGCTTCCTGTCTTTT+TGG + chr3_3:69448151-69448170 Msa0467950:intron 35.0%
TTGCATTGTGATCTGAAAGA+CGG - chr3_3:69448277-69448296 None:intergenic 35.0%
CTTGAGATTTATACCATAGG+GGG - chr3_3:69448357-69448376 None:intergenic 35.0%
!! CTAATTGATCTTTTAGGGGA+GGG - chr3_3:69448383-69448402 None:intergenic 35.0%
!!! TTGCCATTTTGTTTCTCGTT+TGG + chr3_3:69448428-69448447 Msa0467950:intron 35.0%
!!! TGCCATTTTGTTTCTCGTTT+GGG + chr3_3:69448429-69448448 Msa0467950:intron 35.0%
ATCCCAAACGAGAAACAAAA+TGG - chr3_3:69448434-69448453 None:intergenic 35.0%
AACCTCCATTGATATGCTAT+TGG + chr3_3:69448534-69448553 Msa0467950:intron 35.0%
AACCAATAGCATATCAATGG+AGG - chr3_3:69448539-69448558 None:intergenic 35.0%
!! GCATAAAATCTTTGGTTTGG+GGG - chr3_3:69448908-69448927 None:intergenic 35.0%
CTTTGCCTTTGGATATAAAG+TGG - chr3_3:69448989-69449008 None:intergenic 35.0%
CACTTTATATCCAAAGGCAA+AGG + chr3_3:69448987-69449006 Msa0467950:CDS 35.0%
! AATAAGAAATCATGACTCGG+AGG - chr3_3:69449059-69449078 None:intergenic 35.0%
!! CAGTTGTTTCTACAAATAGG+AGG - chr3_3:69449167-69449186 None:intergenic 35.0%
! TTTGGATCAGACAAGGTATT+TGG - chr3_3:69449231-69449250 None:intergenic 35.0%
TCTTCTGTCAACCAATTCAT+GGG + chr3_3:69449281-69449300 Msa0467950:CDS 35.0%
CAATATTCCAGTGACGAAAA+AGG - chr3_3:69449390-69449409 None:intergenic 35.0%
!! CTTTTTCGTCACTGGAATAT+TGG + chr3_3:69449388-69449407 Msa0467950:CDS 35.0%
! CTGAGCTAATGATGTTTTGT+AGG + chr3_3:69449617-69449636 Msa0467950:three_prime_UTR 35.0%
TAAAAAGAAATCCTCGTGGA+AGG - chr3_3:69449801-69449820 None:intergenic 35.0%
! TACTTTGAGGATGTTAGCAC+TGG + chr3_3:69447861-69447880 Msa0467950:CDS 40.0%
GGTAATCTTTAGCCAAAGAG+AGG - chr3_3:69448004-69448023 None:intergenic 40.0%
! CATCAAACTCTGAGAGATCA+TGG - chr3_3:69448232-69448251 None:intergenic 40.0%
GTCTTTCAGATCACAATGCA+AGG + chr3_3:69448276-69448295 Msa0467950:CDS 40.0%
GGATTCAATTTCACTGCTTC+AGG - chr3_3:69448317-69448336 None:intergenic 40.0%
!! GCTAATTGATCTTTTAGGGG+AGG - chr3_3:69448384-69448403 None:intergenic 40.0%
! TGTTTCTCGTTTGGGATGAA+TGG + chr3_3:69448437-69448456 Msa0467950:intron 40.0%
ATATTCATTCTGCAGATGGG+AGG + chr3_3:69448808-69448827 Msa0467950:intron 40.0%
ATGCTATCTGATGATTCCAG+TGG + chr3_3:69448963-69448982 Msa0467950:CDS 40.0%
TTTGGATATAAAGTGGCCAC+TGG - chr3_3:69448982-69449001 None:intergenic 40.0%
! AGTGGCCACTTTATATCCAA+AGG + chr3_3:69448981-69449000 Msa0467950:CDS 40.0%
AATCTTGGTTCCTTTGCCTT+TGG - chr3_3:69449000-69449019 None:intergenic 40.0%
TGTAGCATTTGGATCAGACA+AGG - chr3_3:69449238-69449257 None:intergenic 40.0%
CTCTTCTGTCAACCAATTCA+TGG + chr3_3:69449280-69449299 Msa0467950:CDS 40.0%
CTTCTGTCAACCAATTCATG+GGG + chr3_3:69449282-69449301 Msa0467950:CDS 40.0%
ATCATATGGACCCCATGAAT+TGG - chr3_3:69449295-69449314 None:intergenic 40.0%
CAAGGGAAACTTGACTCATA+GGG - chr3_3:69449510-69449529 None:intergenic 40.0%
ATTAATCCAGCTGGTTGCAA+GGG - chr3_3:69449527-69449546 None:intergenic 40.0%
AGCATACTCATTAATCCAGC+TGG - chr3_3:69449536-69449555 None:intergenic 40.0%
! CTCAGTATCATAATGGGGTT+GGG - chr3_3:69449602-69449621 None:intergenic 40.0%
! TACTTTGAGGATGTTAGCAC+TGG + chr3_3:69447861-69447880 Msa0467950:CDS 40.0%
GGTAATCTTTAGCCAAAGAG+AGG - chr3_3:69448004-69448023 None:intergenic 40.0%
! CATCAAACTCTGAGAGATCA+TGG - chr3_3:69448232-69448251 None:intergenic 40.0%
GTCTTTCAGATCACAATGCA+AGG + chr3_3:69448276-69448295 Msa0467950:CDS 40.0%
GGATTCAATTTCACTGCTTC+AGG - chr3_3:69448317-69448336 None:intergenic 40.0%
!! GCTAATTGATCTTTTAGGGG+AGG - chr3_3:69448384-69448403 None:intergenic 40.0%
! TGTTTCTCGTTTGGGATGAA+TGG + chr3_3:69448437-69448456 Msa0467950:intron 40.0%
ATATTCATTCTGCAGATGGG+AGG + chr3_3:69448808-69448827 Msa0467950:intron 40.0%
ATGCTATCTGATGATTCCAG+TGG + chr3_3:69448963-69448982 Msa0467950:CDS 40.0%
TTTGGATATAAAGTGGCCAC+TGG - chr3_3:69448982-69449001 None:intergenic 40.0%
! AGTGGCCACTTTATATCCAA+AGG + chr3_3:69448981-69449000 Msa0467950:CDS 40.0%
AATCTTGGTTCCTTTGCCTT+TGG - chr3_3:69449000-69449019 None:intergenic 40.0%
TGTAGCATTTGGATCAGACA+AGG - chr3_3:69449238-69449257 None:intergenic 40.0%
CTCTTCTGTCAACCAATTCA+TGG + chr3_3:69449280-69449299 Msa0467950:CDS 40.0%
CTTCTGTCAACCAATTCATG+GGG + chr3_3:69449282-69449301 Msa0467950:CDS 40.0%
ATCATATGGACCCCATGAAT+TGG - chr3_3:69449295-69449314 None:intergenic 40.0%
CAAGGGAAACTTGACTCATA+GGG - chr3_3:69449510-69449529 None:intergenic 40.0%
ATTAATCCAGCTGGTTGCAA+GGG - chr3_3:69449527-69449546 None:intergenic 40.0%
AGCATACTCATTAATCCAGC+TGG - chr3_3:69449536-69449555 None:intergenic 40.0%
! CTCAGTATCATAATGGGGTT+GGG - chr3_3:69449602-69449621 None:intergenic 40.0%
TTCTTACCGGTGGAATTGTC+TGG - chr3_3:69447762-69447781 None:intergenic 45.0%
AGACGATTCTTTCTTACCGG+TGG - chr3_3:69447772-69447791 None:intergenic 45.0%
GCTGCTGGAGAAGTTTCAAT+TGG - chr3_3:69447804-69447823 None:intergenic 45.0%
! CCAAGCTTTAGTGTGAGCAA+TGG - chr3_3:69447831-69447850 None:intergenic 45.0%
CCATTGCTCACACTAAAGCT+TGG + chr3_3:69447828-69447847 Msa0467950:CDS 45.0%
! TCTGCAGTTCCTCTTTTGTG+CGG + chr3_3:69447909-69447928 Msa0467950:intron 45.0%
CCTTTCTTTCCGCACAAAAG+AGG - chr3_3:69447921-69447940 None:intergenic 45.0%
! CCTCTTTTGTGCGGAAAGAA+AGG + chr3_3:69447918-69447937 Msa0467950:intron 45.0%
! GATTTTGCCAGCAATGTAGC+AGG + chr3_3:69448093-69448112 Msa0467950:CDS 45.0%
AATTTCACTGCTTCAGGCTG+AGG - chr3_3:69448311-69448330 None:intergenic 45.0%
TTGACAGAAGAGAGAGAGCA+CGG - chr3_3:69449272-69449291 None:intergenic 45.0%
TGTCCGATTGGAGTGTATGA+GGG - chr3_3:69449331-69449350 None:intergenic 45.0%
TTGTCCGATTGGAGTGTATG+AGG - chr3_3:69449332-69449351 None:intergenic 45.0%
ATACACTCCAATCGGACAAC+CGG + chr3_3:69449333-69449352 Msa0467950:CDS 45.0%
TTGGCACACTGATCAACATC+AGG + chr3_3:69449407-69449426 Msa0467950:CDS 45.0%
GCAAGGGAAACTTGACTCAT+AGG - chr3_3:69449511-69449530 None:intergenic 45.0%
CATTAATCCAGCTGGTTGCA+AGG - chr3_3:69449528-69449547 None:intergenic 45.0%
! GCTCAGTATCATAATGGGGT+TGG - chr3_3:69449603-69449622 None:intergenic 45.0%
TGGAAGGTGGAAGACATTCA+TGG - chr3_3:69449785-69449804 None:intergenic 45.0%
AAAGAAATCCTCGTGGAAGG+TGG - chr3_3:69449798-69449817 None:intergenic 45.0%
TTCTTACCGGTGGAATTGTC+TGG - chr3_3:69447762-69447781 None:intergenic 45.0%
AGACGATTCTTTCTTACCGG+TGG - chr3_3:69447772-69447791 None:intergenic 45.0%
GCTGCTGGAGAAGTTTCAAT+TGG - chr3_3:69447804-69447823 None:intergenic 45.0%
! CCAAGCTTTAGTGTGAGCAA+TGG - chr3_3:69447831-69447850 None:intergenic 45.0%
CCATTGCTCACACTAAAGCT+TGG + chr3_3:69447828-69447847 Msa0467950:CDS 45.0%
! TCTGCAGTTCCTCTTTTGTG+CGG + chr3_3:69447909-69447928 Msa0467950:intron 45.0%
CCTTTCTTTCCGCACAAAAG+AGG - chr3_3:69447921-69447940 None:intergenic 45.0%
! CCTCTTTTGTGCGGAAAGAA+AGG + chr3_3:69447918-69447937 Msa0467950:intron 45.0%
! GATTTTGCCAGCAATGTAGC+AGG + chr3_3:69448093-69448112 Msa0467950:CDS 45.0%
AATTTCACTGCTTCAGGCTG+AGG - chr3_3:69448311-69448330 None:intergenic 45.0%
TTGACAGAAGAGAGAGAGCA+CGG - chr3_3:69449272-69449291 None:intergenic 45.0%
TGTCCGATTGGAGTGTATGA+GGG - chr3_3:69449331-69449350 None:intergenic 45.0%
TTGTCCGATTGGAGTGTATG+AGG - chr3_3:69449332-69449351 None:intergenic 45.0%
ATACACTCCAATCGGACAAC+CGG + chr3_3:69449333-69449352 Msa0467950:CDS 45.0%
TTGGCACACTGATCAACATC+AGG + chr3_3:69449407-69449426 Msa0467950:CDS 45.0%
GCAAGGGAAACTTGACTCAT+AGG - chr3_3:69449511-69449530 None:intergenic 45.0%
CATTAATCCAGCTGGTTGCA+AGG - chr3_3:69449528-69449547 None:intergenic 45.0%
! GCTCAGTATCATAATGGGGT+TGG - chr3_3:69449603-69449622 None:intergenic 45.0%
TGGAAGGTGGAAGACATTCA+TGG - chr3_3:69449785-69449804 None:intergenic 45.0%
AAAGAAATCCTCGTGGAAGG+TGG - chr3_3:69449798-69449817 None:intergenic 45.0%
! AGCAGATTTTGAGCTCCTCG+AGG - chr3_3:69447679-69447698 None:intergenic 50.0%
GGTTCTCCAGACAATTCCAC+CGG + chr3_3:69447753-69447772 Msa0467950:CDS 50.0%
TGCAGAGGAAGAGGCTTTCT+TGG - chr3_3:69447895-69447914 None:intergenic 50.0%
AAGAGGAACTGCAGAGGAAG+AGG - chr3_3:69447904-69447923 None:intergenic 50.0%
GCACAAAAGAGGAACTGCAG+AGG - chr3_3:69447910-69447929 None:intergenic 50.0%
CATGCTAAATCCAAGCTGCC+AGG + chr3_3:69447959-69447978 Msa0467950:CDS 50.0%
CTTTAGCCAAAGAGAGGTCG+AGG - chr3_3:69447998-69448017 None:intergenic 50.0%
CAGTCATTCCAAATCGCCTG+TGG + chr3_3:69448046-69448065 Msa0467950:CDS 50.0%
TCATTCCAAATCGCCTGTGG+TGG + chr3_3:69448049-69448068 Msa0467950:CDS 50.0%
TACTACCACCACAGGCGATT+TGG - chr3_3:69448057-69448076 None:intergenic 50.0%
AAACCAGCTACTACCACCAC+AGG - chr3_3:69448065-69448084 None:intergenic 50.0%
TGTGGTGGTAGTAGCTGGTT+TGG + chr3_3:69448064-69448083 Msa0467950:CDS 50.0%
ACATGCACCTGCTACATTGC+TGG - chr3_3:69448103-69448122 None:intergenic 50.0%
ACAACCTGGGACAGCAATCT+TGG - chr3_3:69449015-69449034 None:intergenic 50.0%
ATTGGAGTGTATGAGGGAGG+GGG - chr3_3:69449325-69449344 None:intergenic 50.0%
GATTGGAGTGTATGAGGGAG+GGG - chr3_3:69449326-69449345 None:intergenic 50.0%
CGATTGGAGTGTATGAGGGA+GGG - chr3_3:69449327-69449346 None:intergenic 50.0%
CCTCCCTCATACACTCCAAT+CGG + chr3_3:69449325-69449344 Msa0467950:CDS 50.0%
CTGAGCAGTTGCATACTGAG+GGG - chr3_3:69449361-69449380 None:intergenic 50.0%
GCTGAGCAGTTGCATACTGA+GGG - chr3_3:69449362-69449381 None:intergenic 50.0%
GTAACCCGAGAACGAGATAC+AGG - chr3_3:69449445-69449464 None:intergenic 50.0%
AAGTTTCCCTTGCAACCAGC+TGG + chr3_3:69449518-69449537 Msa0467950:CDS 50.0%
AATGTCTTCCACCTTCCACG+AGG + chr3_3:69449787-69449806 Msa0467950:three_prime_UTR 50.0%
! AGCAGATTTTGAGCTCCTCG+AGG - chr3_3:69447679-69447698 None:intergenic 50.0%
GGTTCTCCAGACAATTCCAC+CGG + chr3_3:69447753-69447772 Msa0467950:CDS 50.0%
TGCAGAGGAAGAGGCTTTCT+TGG - chr3_3:69447895-69447914 None:intergenic 50.0%
AAGAGGAACTGCAGAGGAAG+AGG - chr3_3:69447904-69447923 None:intergenic 50.0%
GCACAAAAGAGGAACTGCAG+AGG - chr3_3:69447910-69447929 None:intergenic 50.0%
CATGCTAAATCCAAGCTGCC+AGG + chr3_3:69447959-69447978 Msa0467950:CDS 50.0%
CTTTAGCCAAAGAGAGGTCG+AGG - chr3_3:69447998-69448017 None:intergenic 50.0%
CAGTCATTCCAAATCGCCTG+TGG + chr3_3:69448046-69448065 Msa0467950:CDS 50.0%
TCATTCCAAATCGCCTGTGG+TGG + chr3_3:69448049-69448068 Msa0467950:CDS 50.0%
TACTACCACCACAGGCGATT+TGG - chr3_3:69448057-69448076 None:intergenic 50.0%
AAACCAGCTACTACCACCAC+AGG - chr3_3:69448065-69448084 None:intergenic 50.0%
TGTGGTGGTAGTAGCTGGTT+TGG + chr3_3:69448064-69448083 Msa0467950:CDS 50.0%
ACATGCACCTGCTACATTGC+TGG - chr3_3:69448103-69448122 None:intergenic 50.0%
ACAACCTGGGACAGCAATCT+TGG - chr3_3:69449015-69449034 None:intergenic 50.0%
ATTGGAGTGTATGAGGGAGG+GGG - chr3_3:69449325-69449344 None:intergenic 50.0%
GATTGGAGTGTATGAGGGAG+GGG - chr3_3:69449326-69449345 None:intergenic 50.0%
CGATTGGAGTGTATGAGGGA+GGG - chr3_3:69449327-69449346 None:intergenic 50.0%
CCTCCCTCATACACTCCAAT+CGG + chr3_3:69449325-69449344 Msa0467950:CDS 50.0%
CTGAGCAGTTGCATACTGAG+GGG - chr3_3:69449361-69449380 None:intergenic 50.0%
GCTGAGCAGTTGCATACTGA+GGG - chr3_3:69449362-69449381 None:intergenic 50.0%
GTAACCCGAGAACGAGATAC+AGG - chr3_3:69449445-69449464 None:intergenic 50.0%
AAGTTTCCCTTGCAACCAGC+TGG + chr3_3:69449518-69449537 Msa0467950:CDS 50.0%
AATGTCTTCCACCTTCCACG+AGG + chr3_3:69449787-69449806 Msa0467950:three_prime_UTR 50.0%
! GTGAGCAATGGTTCTGCTGC+TGG - chr3_3:69447819-69447838 None:intergenic 55.0%
GCTAAATCCAAGCTGCCAGG+TGG + chr3_3:69447962-69447981 Msa0467950:CDS 55.0%
AATCCAAGCTGCCAGGTGGA+AGG + chr3_3:69447966-69447985 Msa0467950:CDS 55.0%
TTGTGGCCTCGACCTCTCTT+TGG + chr3_3:69447989-69448008 Msa0467950:CDS 55.0%
TGCAGATGGGAGGCAGACAA+TGG + chr3_3:69448818-69448837 Msa0467950:intron 55.0%
GCAGATGGGAGGCAGACAAT+GGG + chr3_3:69448819-69448838 Msa0467950:intron 55.0%
!! AGCTTGCTGTTGGGCATGTC+TGG - chr3_3:69448885-69448904 None:intergenic 55.0%
!! GTTTGGGGGAGCTTGCTGTT+GGG - chr3_3:69448894-69448913 None:intergenic 55.0%
GGAACCAAGATTGCTGTCCC+AGG + chr3_3:69449008-69449027 Msa0467950:CDS 55.0%
! GAGGGGGGCTTGGTATCATA+TGG - chr3_3:69449309-69449328 None:intergenic 55.0%
TTGGAGTGTATGAGGGAGGG+GGG - chr3_3:69449324-69449343 None:intergenic 55.0%
CCGATTGGAGTGTATGAGGG+AGG - chr3_3:69449328-69449347 None:intergenic 55.0%
! AGTTGCATACTGAGGGGTGC+CGG - chr3_3:69449355-69449374 None:intergenic 55.0%
CGCTGAGCAGTTGCATACTG+AGG - chr3_3:69449363-69449382 None:intergenic 55.0%
!! GCGCTCACCTTTTTCGTCAC+TGG + chr3_3:69449380-69449399 Msa0467950:CDS 55.0%
CAGCGCCTGTATCTCGTTCT+CGG + chr3_3:69449437-69449456 Msa0467950:CDS 55.0%
AGCGCCTGTATCTCGTTCTC+GGG + chr3_3:69449438-69449457 Msa0467950:CDS 55.0%
! GTGAGCAATGGTTCTGCTGC+TGG - chr3_3:69447819-69447838 None:intergenic 55.0%
GCTAAATCCAAGCTGCCAGG+TGG + chr3_3:69447962-69447981 Msa0467950:CDS 55.0%
AATCCAAGCTGCCAGGTGGA+AGG + chr3_3:69447966-69447985 Msa0467950:CDS 55.0%
TTGTGGCCTCGACCTCTCTT+TGG + chr3_3:69447989-69448008 Msa0467950:CDS 55.0%
TGCAGATGGGAGGCAGACAA+TGG + chr3_3:69448818-69448837 Msa0467950:intron 55.0%
GCAGATGGGAGGCAGACAAT+GGG + chr3_3:69448819-69448838 Msa0467950:intron 55.0%
!! AGCTTGCTGTTGGGCATGTC+TGG - chr3_3:69448885-69448904 None:intergenic 55.0%
!! GTTTGGGGGAGCTTGCTGTT+GGG - chr3_3:69448894-69448913 None:intergenic 55.0%
GGAACCAAGATTGCTGTCCC+AGG + chr3_3:69449008-69449027 Msa0467950:CDS 55.0%
! GAGGGGGGCTTGGTATCATA+TGG - chr3_3:69449309-69449328 None:intergenic 55.0%
TTGGAGTGTATGAGGGAGGG+GGG - chr3_3:69449324-69449343 None:intergenic 55.0%
CCGATTGGAGTGTATGAGGG+AGG - chr3_3:69449328-69449347 None:intergenic 55.0%
! AGTTGCATACTGAGGGGTGC+CGG - chr3_3:69449355-69449374 None:intergenic 55.0%
CGCTGAGCAGTTGCATACTG+AGG - chr3_3:69449363-69449382 None:intergenic 55.0%
!! GCGCTCACCTTTTTCGTCAC+TGG + chr3_3:69449380-69449399 Msa0467950:CDS 55.0%
CAGCGCCTGTATCTCGTTCT+CGG + chr3_3:69449437-69449456 Msa0467950:CDS 55.0%
AGCGCCTGTATCTCGTTCTC+GGG + chr3_3:69449438-69449457 Msa0467950:CDS 55.0%
CAACCTTCCACCTGGCAGCT+TGG - chr3_3:69447972-69447991 None:intergenic 60.0%
AGCTGCCAGGTGGAAGGTTG+TGG + chr3_3:69447972-69447991 Msa0467950:CDS 60.0%
TCGCCTGTGGTGGTAGTAGC+TGG + chr3_3:69448059-69448078 Msa0467950:CDS 60.0%
GGGGACGAAGAGAGAGCTGA+TGG - chr3_3:69448338-69448357 None:intergenic 60.0%
GCTCTCTCTTCGTCCCCCTA+TGG + chr3_3:69448341-69448360 Msa0467950:CDS 60.0%
!! GGTTTGGGGGAGCTTGCTGT+TGG - chr3_3:69448895-69448914 None:intergenic 60.0%
CGAGAACGAGATACAGGCGC+TGG - chr3_3:69449439-69449458 None:intergenic 60.0%
CAACCTTCCACCTGGCAGCT+TGG - chr3_3:69447972-69447991 None:intergenic 60.0%
AGCTGCCAGGTGGAAGGTTG+TGG + chr3_3:69447972-69447991 Msa0467950:CDS 60.0%
TCGCCTGTGGTGGTAGTAGC+TGG + chr3_3:69448059-69448078 Msa0467950:CDS 60.0%
GGGGACGAAGAGAGAGCTGA+TGG - chr3_3:69448338-69448357 None:intergenic 60.0%
GCTCTCTCTTCGTCCCCCTA+TGG + chr3_3:69448341-69448360 Msa0467950:CDS 60.0%
!! GGTTTGGGGGAGCTTGCTGT+TGG - chr3_3:69448895-69448914 None:intergenic 60.0%
CGAGAACGAGATACAGGCGC+TGG - chr3_3:69449439-69449458 None:intergenic 60.0%
CGAGGCCACAACCTTCCACC+TGG - chr3_3:69447980-69447999 None:intergenic 65.0%
GTGTATGAGGGAGGGGGGCT+TGG - chr3_3:69449319-69449338 None:intergenic 65.0%
!! AGGGGTGCCGGTTGTCCGAT+TGG - chr3_3:69449343-69449362 None:intergenic 65.0%
!! CGAGATACAGGCGCTGGAGC+TGG - chr3_3:69449433-69449452 None:intergenic 65.0%
CGAGGCCACAACCTTCCACC+TGG - chr3_3:69447980-69447999 None:intergenic 65.0%
GTGTATGAGGGAGGGGGGCT+TGG - chr3_3:69449319-69449338 None:intergenic 65.0%
!! AGGGGTGCCGGTTGTCCGAT+TGG - chr3_3:69449343-69449362 None:intergenic 65.0%
!! CGAGATACAGGCGCTGGAGC+TGG - chr3_3:69449433-69449452 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69447663 69449916 69447663 ID=Msa0467950;Name=Msa0467950
chr3_3 mRNA 69447663 69449916 69447663 ID=Msa0467950-mRNA-1;Parent=Msa0467950;Name=Msa0467950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.75|0.6|1|0.5|0.4|5|371|356
chr3_3 exon 69447663 69447885 69447663 ID=Msa0467950-mRNA-1:exon:16428;Parent=Msa0467950-mRNA-1
chr3_3 exon 69447940 69448114 69447940 ID=Msa0467950-mRNA-1:exon:16429;Parent=Msa0467950-mRNA-1
chr3_3 exon 69448226 69448362 69448226 ID=Msa0467950-mRNA-1:exon:16430;Parent=Msa0467950-mRNA-1
chr3_3 exon 69448823 69449029 69448823 ID=Msa0467950-mRNA-1:exon:16431;Parent=Msa0467950-mRNA-1
chr3_3 exon 69449217 69449916 69449217 ID=Msa0467950-mRNA-1:exon:16432;Parent=Msa0467950-mRNA-1
chr3_3 CDS 69447663 69447885 69447663 ID=Msa0467950-mRNA-1:cds;Parent=Msa0467950-mRNA-1
chr3_3 CDS 69447940 69448114 69447940 ID=Msa0467950-mRNA-1:cds;Parent=Msa0467950-mRNA-1
chr3_3 CDS 69448226 69448362 69448226 ID=Msa0467950-mRNA-1:cds;Parent=Msa0467950-mRNA-1
chr3_3 CDS 69448823 69449029 69448823 ID=Msa0467950-mRNA-1:cds;Parent=Msa0467950-mRNA-1
chr3_3 CDS 69449217 69449545 69449217 ID=Msa0467950-mRNA-1:cds;Parent=Msa0467950-mRNA-1
chr3_3 three_prime_UTR 69449546 69449916 69449546 ID=Msa0467950-mRNA-1:three_prime_utr;Parent=Msa0467950-mRNA-1
Gene Sequence

>Msa0467950

ATGCATGCTTCATCCTCGAGGAGCTCAAAATCTGCTTCGAATAATTCATCATCAAATGAGGACAGCAAGACATCAATGTTAACTCAAGAAGGTTCTCCAGACAATTCCACCGGTAAGAAAGAATCGTCTAAAGGAGATCCAATTGAAACTTCTCCAGCAGCAGAACCATTGCTCACACTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTAGCACTGGAAGTAAATCGAGCAGTCAGAACATGCTAAATCCAAGCTGCCAGGTGGAAGGTTGTGGCCTCGACCTCTCTTTGGCTAAAGATTACCATCGGAAACATAGAATTTGTGACAGTCATTCCAAATCGCCTGTGGTGGTAGTAGCTGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTCTCAGAGTTTGATGATAAAAAAAGAAGCTGCAGACGCCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTGAAATTGAATCCATCAGCTCTCTCTTCGTCCCCCTATGATGGGAGGCAGACAATGGGCCCATTTGCTTTTCCAAAGAATACTTCAAATTTAGCATGGCCAGACATGCCCAACAGCAAGCTCCCCCAAACCAAAGATTTTATGCTCAAAACTCCAAAAAACTTCAGCAAGTTTGTCACTATGCTATCTGATGATTCCAGTGGCCACTTTATATCCAAAGGCAAAGGAACCAAGATTGCTGTCCCAGGTCTAGAAGATCCAAATACCTTGTCTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTCCATATGATACCAAGCCCCCCTCCCTCATACACTCCAATCGGACAACCGGCACCCCTCAGTATGCAACTGCTCAGCGCTCACCTTTTTCGTCACTGGAATATTGGCACACTGATCAACATCAGGCCAGCTCCAGCGCCTGTATCTCGTTCTCGGGTTACGACAATAGCAATCGCTTTCAAGACTTTCAGCTGTTCAGCGAACCCTATGAGTCAAGTTTCCCTTGCAACCAGCTGGATTAA
Protein sequence

>Msa0467950

MHASSSRSSKSASNNSSSNEDSKTSMLTQEGSPDNSTGKKESSKGDPIETSPAAEPLLTLKLGKRFYFEDVSTGSKSSSQNMLNPSCQVEGCGLDLSLAKDYHRKHRICDSHSKSPVVVVAGLERRFCQQCSRFHDLSEFDDKKRSCRRRLSDHNARRRKPQPEAVKLNPSALSSSPYDGRQTMGPFAFPKNTSNLAWPDMPNSKLPQTKDFMLKTPKNFSKFVTMLSDDSSGHFISKGKGTKIAVPGLEDPNTLSDPNATQDVNRALSLLSTNSWGPYDTKPPSLIHSNRTTGTPQYATAQRSPFSSLEYWHTDQHQASSSACISFSGYDNSNRFQDFQLFSEPYESSFPCNQLD*