Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468500 | XP_003602221.1 | 82.216 | 388 | 31 | 4 | 1 | 350 | 1 | 388 | 0.0 | 635 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468500 | sp|P0CH02|AT21B_ARATH | 35.693 | 339 | 162 | 11 | 38 | 337 | 39 | 360 | 1.51e-50 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468500 | G7J6U0 | 82.216 | 388 | 31 | 4 | 1 | 350 | 1 | 388 | 0.0 | 635 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0376110 | Msa0468500 | 0.804533 | 2.063661e-49 | -8.615850e-47 |
| Msa0468500 | Msa0516110 | 0.806777 | 6.976079e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468500 | MtrunA17_Chr3g0126611 | 82.216 | 388 | 31 | 4 | 1 | 350 | 1 | 388 | 0.0 | 635 |
| Msa0468500 | MtrunA17_Chr8g0347101 | 36.842 | 361 | 187 | 10 | 26 | 349 | 14 | 370 | 1.20e-64 | 209 |
| Msa0468500 | MtrunA17_Chr8g0388231 | 35.933 | 359 | 167 | 12 | 37 | 338 | 30 | 382 | 3.18e-53 | 181 |
| Msa0468500 | MtrunA17_Chr8g0388201 | 31.806 | 371 | 186 | 13 | 32 | 340 | 29 | 394 | 8.97e-44 | 155 |
| Msa0468500 | MtrunA17_Chr3g0081611 | 41.667 | 144 | 60 | 5 | 211 | 338 | 18 | 153 | 3.67e-32 | 119 |
| Msa0468500 | MtrunA17_Chr5g0396601 | 29.014 | 355 | 184 | 13 | 44 | 338 | 49 | 395 | 2.75e-30 | 119 |
| Msa0468500 | MtrunA17_Chr5g0396611 | 28.375 | 363 | 186 | 15 | 39 | 338 | 34 | 385 | 3.93e-26 | 107 |
| Msa0468500 | MtrunA17_Chr7g0275601 | 42.982 | 114 | 54 | 3 | 241 | 345 | 47 | 158 | 4.04e-23 | 94.4 |
| Msa0468500 | MtrunA17_Chr5g0396591 | 30.651 | 261 | 134 | 8 | 117 | 338 | 33 | 285 | 4.37e-22 | 94.7 |
| Msa0468500 | MtrunA17_Chr1g0158771 | 31.633 | 294 | 160 | 16 | 8 | 277 | 8 | 284 | 1.65e-18 | 86.7 |
| Msa0468500 | MtrunA17_Chr8g0348151 | 36.486 | 148 | 74 | 4 | 211 | 342 | 20 | 163 | 1.98e-18 | 82.4 |
| Msa0468500 | MtrunA17_Chr7g0248831 | 48.611 | 72 | 37 | 0 | 271 | 342 | 86 | 157 | 1.06e-16 | 77.0 |
| Msa0468500 | MtrunA17_Chr1g0160731 | 27.037 | 270 | 147 | 9 | 44 | 277 | 37 | 292 | 1.13e-16 | 81.3 |
| Msa0468500 | MtrunA17_Chr1g0160771 | 27.796 | 313 | 156 | 15 | 8 | 277 | 11 | 296 | 1.55e-16 | 80.9 |
| Msa0468500 | MtrunA17_Chr1g0160671 | 30.622 | 209 | 125 | 7 | 14 | 207 | 9 | 212 | 9.03e-16 | 76.3 |
| Msa0468500 | MtrunA17_Chr1g0160581 | 25.081 | 307 | 178 | 10 | 13 | 277 | 4 | 300 | 1.13e-14 | 75.1 |
| Msa0468500 | MtrunA17_Chr4g0037001 | 29.032 | 248 | 139 | 10 | 7 | 226 | 6 | 244 | 2.15e-14 | 74.3 |
| Msa0468500 | MtrunA17_Chr1g0177041 | 32.759 | 116 | 69 | 4 | 233 | 342 | 40 | 152 | 5.74e-14 | 69.3 |
| Msa0468500 | MtrunA17_Chr5g0399521 | 28.922 | 204 | 124 | 7 | 43 | 231 | 27 | 224 | 6.14e-13 | 67.8 |
| Msa0468500 | MtrunA17_Chr3g0128771 | 36.364 | 77 | 49 | 0 | 268 | 344 | 94 | 170 | 8.60e-13 | 66.2 |
| Msa0468500 | MtrunA17_Chr2g0300331 | 37.647 | 85 | 51 | 1 | 252 | 336 | 130 | 212 | 1.39e-12 | 66.6 |
| Msa0468500 | MtrunA17_Chr5g0409211 | 46.429 | 56 | 30 | 0 | 282 | 337 | 83 | 138 | 1.46e-12 | 65.5 |
| Msa0468500 | MtrunA17_Chr8g0383871 | 39.706 | 68 | 40 | 1 | 268 | 335 | 115 | 181 | 1.63e-12 | 66.2 |
| Msa0468500 | MtrunA17_Chr8g0383921 | 39.706 | 68 | 40 | 1 | 268 | 335 | 114 | 180 | 2.22e-12 | 65.5 |
| Msa0468500 | MtrunA17_Chr1g0198201 | 36.842 | 76 | 47 | 1 | 271 | 346 | 67 | 141 | 2.80e-12 | 65.5 |
| Msa0468500 | MtrunA17_Chr7g0248841 | 49.020 | 51 | 24 | 1 | 293 | 343 | 104 | 152 | 5.24e-12 | 63.5 |
| Msa0468500 | MtrunA17_Chr5g0409201 | 42.424 | 66 | 32 | 1 | 278 | 343 | 84 | 143 | 6.05e-12 | 63.2 |
| Msa0468500 | MtrunA17_Chr5g0413841 | 27.673 | 159 | 99 | 2 | 193 | 337 | 30 | 186 | 6.87e-12 | 65.9 |
| Msa0468500 | MtrunA17_Chr1g0197031 | 29.496 | 139 | 78 | 4 | 212 | 339 | 19 | 148 | 7.59e-12 | 63.2 |
| Msa0468500 | MtrunA17_Chr1g0197021 | 29.851 | 134 | 83 | 5 | 214 | 342 | 21 | 148 | 7.73e-12 | 62.8 |
| Msa0468500 | MtrunA17_Chr5g0406031 | 30.172 | 116 | 72 | 1 | 229 | 335 | 116 | 231 | 1.14e-11 | 63.9 |
| Msa0468500 | MtrunA17_Chr8g0383941 | 30.579 | 121 | 72 | 3 | 215 | 335 | 68 | 176 | 1.39e-11 | 63.5 |
| Msa0468500 | MtrunA17_Chr8g0383881 | 38.235 | 68 | 41 | 1 | 268 | 335 | 106 | 172 | 1.94e-11 | 63.2 |
| Msa0468500 | MtrunA17_Chr8g0383861 | 38.235 | 68 | 41 | 1 | 268 | 335 | 116 | 182 | 2.31e-11 | 63.2 |
| Msa0468500 | MtrunA17_Chr1g0191601 | 39.683 | 63 | 38 | 0 | 283 | 345 | 117 | 179 | 2.80e-11 | 64.3 |
| Msa0468500 | MtrunA17_Chr5g0426881 | 33.333 | 114 | 68 | 4 | 226 | 336 | 78 | 186 | 2.97e-11 | 64.3 |
| Msa0468500 | MtrunA17_Chr8g0371291 | 37.037 | 81 | 47 | 2 | 255 | 335 | 146 | 222 | 4.36e-11 | 62.0 |
| Msa0468500 | MtrunA17_Chr7g0244851 | 42.029 | 69 | 34 | 2 | 280 | 348 | 99 | 161 | 4.54e-11 | 61.2 |
| Msa0468500 | MtrunA17_Chr7g0273051 | 36.709 | 79 | 49 | 1 | 271 | 348 | 97 | 175 | 5.48e-11 | 63.2 |
| Msa0468500 | MtrunA17_Chr3g0129671 | 36.765 | 68 | 42 | 1 | 268 | 335 | 112 | 178 | 6.63e-11 | 61.6 |
| Msa0468500 | MtrunA17_Chr7g0274731 | 46.000 | 50 | 27 | 0 | 287 | 336 | 108 | 157 | 7.59e-11 | 60.8 |
| Msa0468500 | MtrunA17_Chr6g0451051 | 44.643 | 56 | 28 | 1 | 284 | 336 | 54 | 109 | 8.31e-11 | 60.1 |
| Msa0468500 | MtrunA17_Chr5g0417501 | 43.636 | 55 | 30 | 1 | 281 | 335 | 103 | 156 | 8.88e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468500 | AT5G53110.1 | 41.547 | 349 | 160 | 9 | 35 | 341 | 32 | 378 | 1.86e-84 | 261 |
| Msa0468500 | AT2G46494.1 | 35.693 | 339 | 162 | 11 | 38 | 337 | 39 | 360 | 1.53e-51 | 175 |
| Msa0468500 | AT2G46495.2 | 33.136 | 338 | 172 | 11 | 31 | 338 | 24 | 337 | 1.35e-47 | 164 |
| Msa0468500 | AT2G46495.1 | 34.294 | 347 | 184 | 14 | 31 | 338 | 24 | 365 | 6.17e-47 | 163 |
| Msa0468500 | AT1G28040.1 | 36.364 | 297 | 144 | 10 | 80 | 337 | 7 | 297 | 6.20e-47 | 161 |
| Msa0468500 | AT2G25410.1 | 30.000 | 350 | 201 | 13 | 33 | 340 | 29 | 376 | 1.79e-39 | 144 |
| Msa0468500 | AT5G36001.1 | 30.488 | 328 | 184 | 9 | 31 | 349 | 28 | 320 | 6.72e-39 | 141 |
| Msa0468500 | AT5G07040.1 | 43.411 | 129 | 71 | 2 | 211 | 338 | 12 | 139 | 6.49e-30 | 112 |
| Msa0468500 | AT2G46493.1 | 36.022 | 186 | 101 | 6 | 162 | 337 | 5 | 182 | 1.18e-28 | 110 |
| Msa0468500 | AT3G61550.1 | 36.628 | 172 | 68 | 6 | 209 | 345 | 23 | 188 | 9.64e-21 | 89.7 |
| Msa0468500 | AT5G36001.2 | 30.337 | 178 | 102 | 6 | 31 | 201 | 28 | 190 | 1.44e-17 | 80.9 |
| Msa0468500 | AT2G46160.1 | 44.048 | 84 | 41 | 1 | 268 | 345 | 107 | 190 | 3.62e-16 | 77.0 |
| Msa0468500 | AT2G46160.2 | 44.048 | 84 | 41 | 1 | 268 | 345 | 107 | 190 | 3.62e-16 | 77.0 |
| Msa0468500 | AT2G35910.1 | 32.857 | 140 | 80 | 3 | 211 | 342 | 63 | 196 | 3.74e-15 | 73.9 |
| Msa0468500 | AT5G06490.1 | 28.834 | 163 | 85 | 5 | 211 | 345 | 22 | 181 | 1.10e-14 | 72.4 |
| Msa0468500 | AT1G14200.1 | 40.000 | 70 | 38 | 2 | 266 | 335 | 85 | 150 | 1.85e-13 | 68.6 |
| Msa0468500 | AT2G17730.1 | 32.203 | 118 | 68 | 3 | 229 | 335 | 122 | 238 | 7.24e-13 | 68.2 |
| Msa0468500 | AT5G66070.5 | 32.812 | 128 | 71 | 4 | 220 | 335 | 94 | 218 | 2.32e-12 | 66.2 |
| Msa0468500 | AT5G66070.1 | 32.812 | 128 | 71 | 4 | 220 | 335 | 94 | 218 | 2.32e-12 | 66.2 |
| Msa0468500 | AT4G09110.1 | 42.105 | 76 | 43 | 1 | 271 | 345 | 100 | 175 | 2.97e-12 | 67.0 |
| Msa0468500 | AT5G66070.2 | 40.909 | 66 | 35 | 1 | 270 | 335 | 181 | 242 | 4.97e-12 | 65.5 |
| Msa0468500 | AT4G09120.1 | 40.506 | 79 | 46 | 1 | 268 | 345 | 97 | 175 | 6.05e-12 | 66.6 |
| Msa0468500 | AT1G35330.1 | 46.154 | 65 | 30 | 2 | 289 | 353 | 125 | 184 | 1.83e-11 | 65.1 |
| Msa0468500 | AT5G05280.1 | 44.776 | 67 | 34 | 2 | 287 | 350 | 107 | 173 | 2.37e-11 | 62.4 |
| Msa0468500 | AT5G47610.1 | 41.270 | 63 | 36 | 1 | 275 | 337 | 90 | 151 | 2.61e-11 | 62.0 |
| Msa0468500 | AT1G49230.1 | 39.706 | 68 | 40 | 1 | 268 | 335 | 107 | 173 | 2.70e-11 | 63.2 |
| Msa0468500 | AT4G09130.1 | 42.647 | 68 | 38 | 1 | 271 | 337 | 97 | 164 | 2.93e-11 | 64.3 |
| Msa0468500 | AT4G35840.1 | 40.909 | 66 | 38 | 1 | 271 | 335 | 168 | 233 | 3.13e-11 | 63.2 |
| Msa0468500 | AT3G05200.1 | 28.148 | 135 | 87 | 3 | 206 | 336 | 43 | 171 | 5.82e-11 | 63.9 |
| Msa0468500 | AT5G57750.1 | 28.440 | 109 | 56 | 3 | 262 | 353 | 92 | 195 | 7.44e-11 | 61.6 |
Find 75 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAGAAGTTCTACAAAT+TGG | 0.229386 | 3_3:-70149768 | None:intergenic |
| GAAACAAATTAGGATGAGTT+TGG | 0.247580 | 3_3:-70147653 | None:intergenic |
| TTTCCATGTAAGGTAGATTA+AGG | 0.247749 | 3_3:-70147867 | None:intergenic |
| TTGAGTGAGAGAAGTTGTTT+TGG | 0.275761 | 3_3:-70147958 | None:intergenic |
| GCCACTGCTTGTGTTTGATT+TGG | 0.289245 | 3_3:-70147691 | None:intergenic |
| TTTGGGTATGATTCAATTGT+TGG | 0.299282 | 3_3:-70149579 | None:intergenic |
| CCACTGCTTGTGTTTGATTT+GGG | 0.306529 | 3_3:-70147690 | None:intergenic |
| AGTTGTATGAGCAGTTAAAA+AGG | 0.338148 | 3_3:-70148025 | None:intergenic |
| AGAGGAAAAGGAAACAAATT+AGG | 0.345874 | 3_3:-70147663 | None:intergenic |
| TGAAAGCAATGTTCACATTC+AGG | 0.369028 | 3_3:-70149702 | None:intergenic |
| CATGTCTTACCATTGGGTTT+TGG | 0.369951 | 3_3:-70149630 | None:intergenic |
| AGCTGGCACCCCTGCACATA+TGG | 0.376864 | 3_3:-70149413 | None:intergenic |
| AAACAAATTAGGATGAGTTT+GGG | 0.376952 | 3_3:-70147652 | None:intergenic |
| CTTGTCGTCTGTTTGTGATT+TGG | 0.386576 | 3_3:+70148145 | Msa0468500:CDS |
| TTGGTACCCATGGTTGGACT+TGG | 0.389757 | 3_3:+70149485 | Msa0468500:CDS |
| GGTAAATTGTTGATAGTAAA+CGG | 0.390917 | 3_3:-70148004 | None:intergenic |
| TTTGTAGAACTTCTCCTCTA+AGG | 0.391113 | 3_3:+70149772 | Msa0468500:CDS |
| AAGGTAGATTAAGGAGTGTT+TGG | 0.396216 | 3_3:-70147858 | None:intergenic |
| GATTGTGATGGTAACCTTAG+AGG | 0.403478 | 3_3:-70149786 | None:intergenic |
| CTTCTATATGGAATGGGAAT+CGG | 0.405821 | 3_3:-70147771 | None:intergenic |
| AATTAGGATGAGTTTGGGAT+TGG | 0.407156 | 3_3:-70147647 | None:intergenic |
| CGATTCCCATTCCATATAGA+AGG | 0.408041 | 3_3:+70147772 | Msa0468500:CDS |
| AGTGTCTAAGCATGTTTCTA+TGG | 0.409320 | 3_3:-70147722 | None:intergenic |
| TGATTGAACCGGCACGTTAA+CGG | 0.417888 | 3_3:-70148174 | None:intergenic |
| ATTAGGATGAGTTTGGGATT+GGG | 0.421358 | 3_3:-70147646 | None:intergenic |
| GAGGAGAAGTTCTACAAATT+GGG | 0.424244 | 3_3:-70149767 | None:intergenic |
| ATTGGACATGTCTTACCATT+GGG | 0.427757 | 3_3:-70149636 | None:intergenic |
| GCTTCATTTCACTATTAAGC+TGG | 0.445778 | 3_3:+70149443 | Msa0468500:CDS |
| TATTGGACATGTCTTACCAT+TGG | 0.455747 | 3_3:-70149637 | None:intergenic |
| TCATGAATACACAACACTTC+AGG | 0.460934 | 3_3:+70149546 | Msa0468500:CDS |
| ATATATTCTGACAAGCATAT+TGG | 0.471017 | 3_3:-70149654 | None:intergenic |
| CACCCCTGCACATATGGCTA+TGG | 0.474021 | 3_3:-70149407 | None:intergenic |
| ATATGTAGCAAGTTCAGAAT+TGG | 0.477062 | 3_3:+70149466 | Msa0468500:CDS |
| GATTTGGGTTGAAGAGGAAA+AGG | 0.480262 | 3_3:-70147675 | None:intergenic |
| ATGCACAATGCATTGATGAA+TGG | 0.486845 | 3_3:+70149724 | Msa0468500:CDS |
| TGGAATGGGAATCGGATTAG+TGG | 0.500897 | 3_3:-70147763 | None:intergenic |
| ACTCCTTAATCTACCTTACA+TGG | 0.500945 | 3_3:+70147864 | Msa0468500:CDS |
| TGATAGTAAACGGCATCAAA+AGG | 0.512565 | 3_3:-70147994 | None:intergenic |
| TATGGCGTAACTTGCACCAC+GGG | 0.514622 | 3_3:-70149389 | None:intergenic |
| ATGGCGAATTCCATGACAAC+CGG | 0.515784 | 3_3:-70148241 | None:intergenic |
| GGTTGATACCGTTAACGTGC+CGG | 0.519040 | 3_3:+70148166 | Msa0468500:CDS |
| GAAATGAAGCACAACAAAGC+TGG | 0.534895 | 3_3:-70149430 | None:intergenic |
| TACGCCATAGCCATATGTGC+AGG | 0.538697 | 3_3:+70149403 | Msa0468500:CDS |
| CATCAAAAGGAGAGCTAGAG+AGG | 0.546542 | 3_3:-70147981 | None:intergenic |
| ACTTGGAATATCTTACCTCT+AGG | 0.548359 | 3_3:+70148045 | Msa0468500:CDS |
| TGGTACCCATGGTTGGACTT+GGG | 0.548632 | 3_3:+70149486 | Msa0468500:CDS |
| TCAGAATTGGTACCCATGGT+TGG | 0.553561 | 3_3:+70149479 | Msa0468500:CDS |
| AAGTTCAGAATTGGTACCCA+TGG | 0.555958 | 3_3:+70149475 | Msa0468500:CDS |
| GGAATTCGCCATCGTGTGGA+AGG | 0.557962 | 3_3:+70148252 | Msa0468500:CDS |
| TCATGTATAATTAAGTATTG+TGG | 0.565022 | 3_3:-70149824 | None:intergenic |
| CACGTGCCCAAGTCCAACCA+TGG | 0.566448 | 3_3:-70149492 | None:intergenic |
| ACAAATACATGTGGATACCC+AGG | 0.571175 | 3_3:+70147802 | Msa0468500:CDS |
| CTGAATTGAATGATGATCTC+CGG | 0.571320 | 3_3:+70148222 | Msa0468500:CDS |
| GTGTTTGATTTGGGTTGAAG+AGG | 0.577317 | 3_3:-70147681 | None:intergenic |
| GGATTAGTGGTTCATTCGTG+TGG | 0.578820 | 3_3:-70147750 | None:intergenic |
| CCCAAATCAAACACAAGCAG+TGG | 0.605855 | 3_3:+70147690 | Msa0468500:CDS |
| TCATGGAATTCGCCATCGTG+TGG | 0.608164 | 3_3:+70148248 | Msa0468500:CDS |
| ATGATGATCTCCGGTTGTCA+TGG | 0.609684 | 3_3:+70148231 | Msa0468500:CDS |
| ACGCCATAGCCATATGTGCA+GGG | 0.615668 | 3_3:+70149404 | Msa0468500:CDS |
| TGTGGAAGGTGTGAGTCTCA+TGG | 0.620175 | 3_3:+70148266 | Msa0468500:CDS |
| TGCACAAACACCGTAAGTGA+AGG | 0.621284 | 3_3:-70148122 | None:intergenic |
| GGAAAACATACAAATACATG+TGG | 0.627739 | 3_3:+70147793 | Msa0468500:CDS |
| CGCCATAGCCATATGTGCAG+GGG | 0.628415 | 3_3:+70149405 | Msa0468500:CDS |
| CAAATACATGTGGATACCCA+GGG | 0.631304 | 3_3:+70147803 | Msa0468500:CDS |
| TTACCACCTCTCGATTGTGA+TGG | 0.632507 | 3_3:-70149798 | None:intergenic |
| ATTGGGCACGAAGCATTCAG+TGG | 0.638566 | 3_3:-70149750 | None:intergenic |
| AGAATATATGCCTAAAGAGA+CGG | 0.642075 | 3_3:+70149668 | Msa0468500:CDS |
| GACTCACACCTTCCACACGA+TGG | 0.651360 | 3_3:-70148260 | None:intergenic |
| ACGTGCCCAAGTCCAACCAT+GGG | 0.657557 | 3_3:-70149491 | None:intergenic |
| ACATTGACAGGGATTTCCCG+TGG | 0.660325 | 3_3:+70149373 | Msa0468500:intron |
| CTATGGCGTAACTTGCACCA+CGG | 0.660502 | 3_3:-70149390 | None:intergenic |
| ATACACTTACCAAAACCCAA+TGG | 0.677744 | 3_3:+70149621 | Msa0468500:CDS |
| AGGTTACCATCACAATCGAG+AGG | 0.703610 | 3_3:+70149792 | Msa0468500:CDS |
| TTACCATCACAATCGAGAGG+TGG | 0.706107 | 3_3:+70149795 | Msa0468500:CDS |
| GGAAGGTGTGAGTCTCATGG+TGG | 0.729696 | 3_3:+70148269 | Msa0468500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATGTAAAAATTTAATAAA+AGG | - | chr3_3:70149140-70149159 | None:intergenic | 10.0% |
| !! | TTAAAAATGTTTATTTACTA+CGG | - | chr3_3:70149196-70149215 | None:intergenic | 10.0% |
| !! | AGATGTAAAAATTTAATAAA+AGG | - | chr3_3:70149140-70149159 | None:intergenic | 10.0% |
| !! | TTAAAAATGTTTATTTACTA+CGG | - | chr3_3:70149196-70149215 | None:intergenic | 10.0% |
| !! | ATATAATTAAAATACTCTTG+TGG | + | chr3_3:70148907-70148926 | Msa0468500:intron | 15.0% |
| !! | TATAATTAAAATACTCTTGT+GGG | + | chr3_3:70148908-70148927 | Msa0468500:intron | 15.0% |
| !! | CAAATGCTAAAAATTTAAAA+AGG | - | chr3_3:70149029-70149048 | None:intergenic | 15.0% |
| !! | ATATAATTAAAATACTCTTG+TGG | + | chr3_3:70148907-70148926 | Msa0468500:intron | 15.0% |
| !! | TATAATTAAAATACTCTTGT+GGG | + | chr3_3:70148908-70148927 | Msa0468500:intron | 15.0% |
| !! | CAAATGCTAAAAATTTAAAA+AGG | - | chr3_3:70149029-70149048 | None:intergenic | 15.0% |
| !! | TCTTGCGTATAAAAAAATAT+TGG | - | chr3_3:70148436-70148455 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTATACGCAAG+AGG | + | chr3_3:70148435-70148454 | Msa0468500:intron | 20.0% |
| !! | GTAATATGATTAAAATGGTT+AGG | - | chr3_3:70148632-70148651 | None:intergenic | 20.0% |
| !! | AAGGAGTAATATGATTAAAA+TGG | - | chr3_3:70148637-70148656 | None:intergenic | 20.0% |
| !!! | GCTGAATTTTTTAATCATTT+TGG | + | chr3_3:70148942-70148961 | Msa0468500:intron | 20.0% |
| !! | TTAAATTGTTCTTGAAGAAT+TGG | - | chr3_3:70148992-70149011 | None:intergenic | 20.0% |
| !! | TCTTGCGTATAAAAAAATAT+TGG | - | chr3_3:70148436-70148455 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTATACGCAAG+AGG | + | chr3_3:70148435-70148454 | Msa0468500:intron | 20.0% |
| !! | GTAATATGATTAAAATGGTT+AGG | - | chr3_3:70148632-70148651 | None:intergenic | 20.0% |
| !! | AAGGAGTAATATGATTAAAA+TGG | - | chr3_3:70148637-70148656 | None:intergenic | 20.0% |
| !!! | GCTGAATTTTTTAATCATTT+TGG | + | chr3_3:70148942-70148961 | Msa0468500:intron | 20.0% |
| !! | TTAAATTGTTCTTGAAGAAT+TGG | - | chr3_3:70148992-70149011 | None:intergenic | 20.0% |
| ! | AAACAAATTAGGATGAGTTT+GGG | - | chr3_3:70147655-70147674 | None:intergenic | 25.0% |
| !! | TTGTATGTTTTCCTTCTATA+TGG | - | chr3_3:70147786-70147805 | None:intergenic | 25.0% |
| !! | ATACTAAGATTTTCCATGTA+AGG | - | chr3_3:70147880-70147899 | None:intergenic | 25.0% |
| !!! | GTTTGGCATAGTTTATTTTT+TGG | - | chr3_3:70147903-70147922 | None:intergenic | 25.0% |
| !!! | GGTAAATTGTTGATAGTAAA+CGG | - | chr3_3:70148007-70148026 | None:intergenic | 25.0% |
| ! | AATGTAAATGATAAACGAGA+GGG | - | chr3_3:70148524-70148543 | None:intergenic | 25.0% |
| ! | AAATGTAAATGATAAACGAG+AGG | - | chr3_3:70148525-70148544 | None:intergenic | 25.0% |
| ! | GGAGAGAAAAAATATACTAA+GGG | - | chr3_3:70148571-70148590 | None:intergenic | 25.0% |
| ! | AGGAGAGAAAAAATATACTA+AGG | - | chr3_3:70148572-70148591 | None:intergenic | 25.0% |
| ! | ATAGCTGATTGATTAAACTA+AGG | - | chr3_3:70148656-70148675 | None:intergenic | 25.0% |
| ! | TTAATCAATCAGCTATCTTA+AGG | + | chr3_3:70148660-70148679 | Msa0468500:intron | 25.0% |
| !! | TCCTTATTGTTTAAGTTTGA+AGG | + | chr3_3:70148691-70148710 | Msa0468500:intron | 25.0% |
| !! | CCTTATTGTTTAAGTTTGAA+GGG | + | chr3_3:70148692-70148711 | Msa0468500:intron | 25.0% |
| ! | TTTCCATGACTAATTAGATA+TGG | + | chr3_3:70148776-70148795 | Msa0468500:intron | 25.0% |
| ! | TTTCCATATCTAATTAGTCA+TGG | - | chr3_3:70148782-70148801 | None:intergenic | 25.0% |
| ! | TCTTTCTCAACAAAAATTGT+CGG | + | chr3_3:70149049-70149068 | Msa0468500:intron | 25.0% |
| !! | ATGAAATTTGAAACATTGAC+AGG | + | chr3_3:70149361-70149380 | Msa0468500:intron | 25.0% |
| !! | TGAAATTTGAAACATTGACA+GGG | + | chr3_3:70149362-70149381 | Msa0468500:intron | 25.0% |
| ! | ATATATTCTGACAAGCATAT+TGG | - | chr3_3:70149657-70149676 | None:intergenic | 25.0% |
| ! | AAACAAATTAGGATGAGTTT+GGG | - | chr3_3:70147655-70147674 | None:intergenic | 25.0% |
| !! | TTGTATGTTTTCCTTCTATA+TGG | - | chr3_3:70147786-70147805 | None:intergenic | 25.0% |
| !! | ATACTAAGATTTTCCATGTA+AGG | - | chr3_3:70147880-70147899 | None:intergenic | 25.0% |
| !!! | GTTTGGCATAGTTTATTTTT+TGG | - | chr3_3:70147903-70147922 | None:intergenic | 25.0% |
| !!! | GGTAAATTGTTGATAGTAAA+CGG | - | chr3_3:70148007-70148026 | None:intergenic | 25.0% |
| ! | AATGTAAATGATAAACGAGA+GGG | - | chr3_3:70148524-70148543 | None:intergenic | 25.0% |
| ! | AAATGTAAATGATAAACGAG+AGG | - | chr3_3:70148525-70148544 | None:intergenic | 25.0% |
| ! | GGAGAGAAAAAATATACTAA+GGG | - | chr3_3:70148571-70148590 | None:intergenic | 25.0% |
| ! | AGGAGAGAAAAAATATACTA+AGG | - | chr3_3:70148572-70148591 | None:intergenic | 25.0% |
| ! | ATAGCTGATTGATTAAACTA+AGG | - | chr3_3:70148656-70148675 | None:intergenic | 25.0% |
| ! | TTAATCAATCAGCTATCTTA+AGG | + | chr3_3:70148660-70148679 | Msa0468500:intron | 25.0% |
| !! | TCCTTATTGTTTAAGTTTGA+AGG | + | chr3_3:70148691-70148710 | Msa0468500:intron | 25.0% |
| !! | CCTTATTGTTTAAGTTTGAA+GGG | + | chr3_3:70148692-70148711 | Msa0468500:intron | 25.0% |
| ! | TTTCCATGACTAATTAGATA+TGG | + | chr3_3:70148776-70148795 | Msa0468500:intron | 25.0% |
| ! | TTTCCATATCTAATTAGTCA+TGG | - | chr3_3:70148782-70148801 | None:intergenic | 25.0% |
| ! | TCTTTCTCAACAAAAATTGT+CGG | + | chr3_3:70149049-70149068 | Msa0468500:intron | 25.0% |
| !! | ATGAAATTTGAAACATTGAC+AGG | + | chr3_3:70149361-70149380 | Msa0468500:intron | 25.0% |
| !! | TGAAATTTGAAACATTGACA+GGG | + | chr3_3:70149362-70149381 | Msa0468500:intron | 25.0% |
| ! | ATATATTCTGACAAGCATAT+TGG | - | chr3_3:70149657-70149676 | None:intergenic | 25.0% |
| GAAACAAATTAGGATGAGTT+TGG | - | chr3_3:70147656-70147675 | None:intergenic | 30.0% | |
| AGAGGAAAAGGAAACAAATT+AGG | - | chr3_3:70147666-70147685 | None:intergenic | 30.0% | |
| ! | GTTTTCCTTCTATATGGAAT+GGG | - | chr3_3:70147780-70147799 | None:intergenic | 30.0% |
| ! | TGTTTTCCTTCTATATGGAA+TGG | - | chr3_3:70147781-70147800 | None:intergenic | 30.0% |
| GGAAAACATACAAATACATG+TGG | + | chr3_3:70147793-70147812 | Msa0468500:CDS | 30.0% | |
| TTTCCATGTAAGGTAGATTA+AGG | - | chr3_3:70147870-70147889 | None:intergenic | 30.0% | |
| GTTCACAAAAAGTTCTTGTT+TGG | - | chr3_3:70147920-70147939 | None:intergenic | 30.0% | |
| AGTTGTATGAGCAGTTAAAA+AGG | - | chr3_3:70148028-70148047 | None:intergenic | 30.0% | |
| !! | TTTTAACTGCTCATACAACT+TGG | + | chr3_3:70148028-70148047 | Msa0468500:CDS | 30.0% |
| TAATCACTAAGACAAGCTAT+TGG | - | chr3_3:70148077-70148096 | None:intergenic | 30.0% | |
| TGTTGCAAAAATGTTGTACT+TGG | - | chr3_3:70148102-70148121 | None:intergenic | 30.0% | |
| GACAACACTTGATCAAAAAA+CGG | - | chr3_3:70148200-70148219 | None:intergenic | 30.0% | |
| ! | CCAAAATGAATTGGTTCAAA+TGG | - | chr3_3:70148480-70148499 | None:intergenic | 30.0% |
| ! | CCATTTGAACCAATTCATTT+TGG | + | chr3_3:70148477-70148496 | Msa0468500:intron | 30.0% |
| ! | TTTGAACCAATTCATTTTGG+TGG | + | chr3_3:70148480-70148499 | Msa0468500:intron | 30.0% |
| ATTGATCCACCAAAATGAAT+TGG | - | chr3_3:70148489-70148508 | None:intergenic | 30.0% | |
| ! | AAAAATATACTAAGGGTGCA+TGG | - | chr3_3:70148564-70148583 | None:intergenic | 30.0% |
| CCCTTCAAACTTAAACAATA+AGG | - | chr3_3:70148695-70148714 | None:intergenic | 30.0% | |
| ! | AATTTGAAGTTTCAAACAGC+AGG | + | chr3_3:70148800-70148819 | Msa0468500:intron | 30.0% |
| ! | ATTTGAAGTTTCAAACAGCA+GGG | + | chr3_3:70148801-70148820 | Msa0468500:intron | 30.0% |
| ATATGTAGCAAGTTCAGAAT+TGG | + | chr3_3:70149466-70149485 | Msa0468500:CDS | 30.0% | |
| TTTGGGTATGATTCAATTGT+TGG | - | chr3_3:70149582-70149601 | None:intergenic | 30.0% | |
| TCATACCCAAAAATAGTGAT+AGG | + | chr3_3:70149591-70149610 | Msa0468500:CDS | 30.0% | |
| !! | CATCACCTATCACTATTTTT+GGG | - | chr3_3:70149599-70149618 | None:intergenic | 30.0% |
| ! | TCATCACCTATCACTATTTT+TGG | - | chr3_3:70149600-70149619 | None:intergenic | 30.0% |
| AGAATATATGCCTAAAGAGA+CGG | + | chr3_3:70149668-70149687 | Msa0468500:CDS | 30.0% | |
| GAAACAAATTAGGATGAGTT+TGG | - | chr3_3:70147656-70147675 | None:intergenic | 30.0% | |
| AGAGGAAAAGGAAACAAATT+AGG | - | chr3_3:70147666-70147685 | None:intergenic | 30.0% | |
| ! | GTTTTCCTTCTATATGGAAT+GGG | - | chr3_3:70147780-70147799 | None:intergenic | 30.0% |
| ! | TGTTTTCCTTCTATATGGAA+TGG | - | chr3_3:70147781-70147800 | None:intergenic | 30.0% |
| GGAAAACATACAAATACATG+TGG | + | chr3_3:70147793-70147812 | Msa0468500:CDS | 30.0% | |
| TTTCCATGTAAGGTAGATTA+AGG | - | chr3_3:70147870-70147889 | None:intergenic | 30.0% | |
| GTTCACAAAAAGTTCTTGTT+TGG | - | chr3_3:70147920-70147939 | None:intergenic | 30.0% | |
| AGTTGTATGAGCAGTTAAAA+AGG | - | chr3_3:70148028-70148047 | None:intergenic | 30.0% | |
| !! | TTTTAACTGCTCATACAACT+TGG | + | chr3_3:70148028-70148047 | Msa0468500:CDS | 30.0% |
| TAATCACTAAGACAAGCTAT+TGG | - | chr3_3:70148077-70148096 | None:intergenic | 30.0% | |
| TGTTGCAAAAATGTTGTACT+TGG | - | chr3_3:70148102-70148121 | None:intergenic | 30.0% | |
| GACAACACTTGATCAAAAAA+CGG | - | chr3_3:70148200-70148219 | None:intergenic | 30.0% | |
| ! | CCAAAATGAATTGGTTCAAA+TGG | - | chr3_3:70148480-70148499 | None:intergenic | 30.0% |
| ! | CCATTTGAACCAATTCATTT+TGG | + | chr3_3:70148477-70148496 | Msa0468500:intron | 30.0% |
| ! | TTTGAACCAATTCATTTTGG+TGG | + | chr3_3:70148480-70148499 | Msa0468500:intron | 30.0% |
| ATTGATCCACCAAAATGAAT+TGG | - | chr3_3:70148489-70148508 | None:intergenic | 30.0% | |
| ! | AAAAATATACTAAGGGTGCA+TGG | - | chr3_3:70148564-70148583 | None:intergenic | 30.0% |
| CCCTTCAAACTTAAACAATA+AGG | - | chr3_3:70148695-70148714 | None:intergenic | 30.0% | |
| ! | AATTTGAAGTTTCAAACAGC+AGG | + | chr3_3:70148800-70148819 | Msa0468500:intron | 30.0% |
| ! | ATTTGAAGTTTCAAACAGCA+GGG | + | chr3_3:70148801-70148820 | Msa0468500:intron | 30.0% |
| ATATGTAGCAAGTTCAGAAT+TGG | + | chr3_3:70149466-70149485 | Msa0468500:CDS | 30.0% | |
| TTTGGGTATGATTCAATTGT+TGG | - | chr3_3:70149582-70149601 | None:intergenic | 30.0% | |
| TCATACCCAAAAATAGTGAT+AGG | + | chr3_3:70149591-70149610 | Msa0468500:CDS | 30.0% | |
| !! | CATCACCTATCACTATTTTT+GGG | - | chr3_3:70149599-70149618 | None:intergenic | 30.0% |
| ! | TCATCACCTATCACTATTTT+TGG | - | chr3_3:70149600-70149619 | None:intergenic | 30.0% |
| AGAATATATGCCTAAAGAGA+CGG | + | chr3_3:70149668-70149687 | Msa0468500:CDS | 30.0% | |
| ! | ATTAGGATGAGTTTGGGATT+GGG | - | chr3_3:70147649-70147668 | None:intergenic | 35.0% |
| ! | AATTAGGATGAGTTTGGGAT+TGG | - | chr3_3:70147650-70147669 | None:intergenic | 35.0% |
| ! | AGTGTCTAAGCATGTTTCTA+TGG | - | chr3_3:70147725-70147744 | None:intergenic | 35.0% |
| CTTCTATATGGAATGGGAAT+CGG | - | chr3_3:70147774-70147793 | None:intergenic | 35.0% | |
| TGCATAATACTTTGAACCCT+GGG | - | chr3_3:70147822-70147841 | None:intergenic | 35.0% | |
| TTGCATAATACTTTGAACCC+TGG | - | chr3_3:70147823-70147842 | None:intergenic | 35.0% | |
| !! | AAGGTAGATTAAGGAGTGTT+TGG | - | chr3_3:70147861-70147880 | None:intergenic | 35.0% |
| ACTCCTTAATCTACCTTACA+TGG | + | chr3_3:70147864-70147883 | Msa0468500:CDS | 35.0% | |
| !!! | TGTTTTGGGAGACAGTTATT+GGG | - | chr3_3:70147946-70147965 | None:intergenic | 35.0% |
| !!! | TTGTTTTGGGAGACAGTTAT+TGG | - | chr3_3:70147947-70147966 | None:intergenic | 35.0% |
| !! | TGAGTGAGAGAAGTTGTTTT+GGG | - | chr3_3:70147960-70147979 | None:intergenic | 35.0% |
| ! | TTGAGTGAGAGAAGTTGTTT+TGG | - | chr3_3:70147961-70147980 | None:intergenic | 35.0% |
| TGATAGTAAACGGCATCAAA+AGG | - | chr3_3:70147997-70148016 | None:intergenic | 35.0% | |
| ACTTGGAATATCTTACCTCT+AGG | + | chr3_3:70148045-70148064 | Msa0468500:CDS | 35.0% | |
| ! | TTTTGCAACACCTTCACTTA+CGG | + | chr3_3:70148112-70148131 | Msa0468500:CDS | 35.0% |
| TCAAAAAACGGTGATTGAAC+CGG | - | chr3_3:70148188-70148207 | None:intergenic | 35.0% | |
| CTGAATTGAATGATGATCTC+CGG | + | chr3_3:70148222-70148241 | Msa0468500:CDS | 35.0% | |
| TATTATTACCTTGTCGTGGA+GGG | - | chr3_3:70148346-70148365 | None:intergenic | 35.0% | |
| GTACTATTATTACCTTGTCG+TGG | - | chr3_3:70148350-70148369 | None:intergenic | 35.0% | |
| GATAATTCACCTTGTATGCT+CGG | - | chr3_3:70148404-70148423 | None:intergenic | 35.0% | |
| GAAATCTCGAACATAATCGA+AGG | - | chr3_3:70148597-70148616 | None:intergenic | 35.0% | |
| TGAAGGGAGATTATTAGAGA+CGG | + | chr3_3:70148708-70148727 | Msa0468500:intron | 35.0% | |
| ! | TTGTCAATTTTTCCTCTCCA+TGG | + | chr3_3:70149262-70149281 | Msa0468500:intron | 35.0% |
| ! | TGTCAATTTTTCCTCTCCAT+GGG | + | chr3_3:70149263-70149282 | Msa0468500:intron | 35.0% |
| GCTTCATTTCACTATTAAGC+TGG | + | chr3_3:70149443-70149462 | Msa0468500:CDS | 35.0% | |
| TCATGAATACACAACACTTC+AGG | + | chr3_3:70149546-70149565 | Msa0468500:CDS | 35.0% | |
| ATACACTTACCAAAACCCAA+TGG | + | chr3_3:70149621-70149640 | Msa0468500:CDS | 35.0% | |
| ATTGGACATGTCTTACCATT+GGG | - | chr3_3:70149639-70149658 | None:intergenic | 35.0% | |
| TATTGGACATGTCTTACCAT+TGG | - | chr3_3:70149640-70149659 | None:intergenic | 35.0% | |
| ! | ATAGTTTTCACCGTCTCTTT+AGG | - | chr3_3:70149681-70149700 | None:intergenic | 35.0% |
| TGAAAGCAATGTTCACATTC+AGG | - | chr3_3:70149705-70149724 | None:intergenic | 35.0% | |
| ! | ATGCACAATGCATTGATGAA+TGG | + | chr3_3:70149724-70149743 | Msa0468500:CDS | 35.0% |
| GAGGAGAAGTTCTACAAATT+GGG | - | chr3_3:70149770-70149789 | None:intergenic | 35.0% | |
| AGAGGAGAAGTTCTACAAAT+TGG | - | chr3_3:70149771-70149790 | None:intergenic | 35.0% | |
| TTTGTAGAACTTCTCCTCTA+AGG | + | chr3_3:70149772-70149791 | Msa0468500:CDS | 35.0% | |
| ! | ATTAGGATGAGTTTGGGATT+GGG | - | chr3_3:70147649-70147668 | None:intergenic | 35.0% |
| ! | AATTAGGATGAGTTTGGGAT+TGG | - | chr3_3:70147650-70147669 | None:intergenic | 35.0% |
| ! | AGTGTCTAAGCATGTTTCTA+TGG | - | chr3_3:70147725-70147744 | None:intergenic | 35.0% |
| CTTCTATATGGAATGGGAAT+CGG | - | chr3_3:70147774-70147793 | None:intergenic | 35.0% | |
| TGCATAATACTTTGAACCCT+GGG | - | chr3_3:70147822-70147841 | None:intergenic | 35.0% | |
| TTGCATAATACTTTGAACCC+TGG | - | chr3_3:70147823-70147842 | None:intergenic | 35.0% | |
| !! | AAGGTAGATTAAGGAGTGTT+TGG | - | chr3_3:70147861-70147880 | None:intergenic | 35.0% |
| ACTCCTTAATCTACCTTACA+TGG | + | chr3_3:70147864-70147883 | Msa0468500:CDS | 35.0% | |
| !!! | TGTTTTGGGAGACAGTTATT+GGG | - | chr3_3:70147946-70147965 | None:intergenic | 35.0% |
| !!! | TTGTTTTGGGAGACAGTTAT+TGG | - | chr3_3:70147947-70147966 | None:intergenic | 35.0% |
| !! | TGAGTGAGAGAAGTTGTTTT+GGG | - | chr3_3:70147960-70147979 | None:intergenic | 35.0% |
| ! | TTGAGTGAGAGAAGTTGTTT+TGG | - | chr3_3:70147961-70147980 | None:intergenic | 35.0% |
| TGATAGTAAACGGCATCAAA+AGG | - | chr3_3:70147997-70148016 | None:intergenic | 35.0% | |
| ACTTGGAATATCTTACCTCT+AGG | + | chr3_3:70148045-70148064 | Msa0468500:CDS | 35.0% | |
| ! | TTTTGCAACACCTTCACTTA+CGG | + | chr3_3:70148112-70148131 | Msa0468500:CDS | 35.0% |
| TCAAAAAACGGTGATTGAAC+CGG | - | chr3_3:70148188-70148207 | None:intergenic | 35.0% | |
| CTGAATTGAATGATGATCTC+CGG | + | chr3_3:70148222-70148241 | Msa0468500:CDS | 35.0% | |
| TATTATTACCTTGTCGTGGA+GGG | - | chr3_3:70148346-70148365 | None:intergenic | 35.0% | |
| GTACTATTATTACCTTGTCG+TGG | - | chr3_3:70148350-70148369 | None:intergenic | 35.0% | |
| GATAATTCACCTTGTATGCT+CGG | - | chr3_3:70148404-70148423 | None:intergenic | 35.0% | |
| GAAATCTCGAACATAATCGA+AGG | - | chr3_3:70148597-70148616 | None:intergenic | 35.0% | |
| TGAAGGGAGATTATTAGAGA+CGG | + | chr3_3:70148708-70148727 | Msa0468500:intron | 35.0% | |
| ! | TTGTCAATTTTTCCTCTCCA+TGG | + | chr3_3:70149262-70149281 | Msa0468500:intron | 35.0% |
| ! | TGTCAATTTTTCCTCTCCAT+GGG | + | chr3_3:70149263-70149282 | Msa0468500:intron | 35.0% |
| GCTTCATTTCACTATTAAGC+TGG | + | chr3_3:70149443-70149462 | Msa0468500:CDS | 35.0% | |
| TCATGAATACACAACACTTC+AGG | + | chr3_3:70149546-70149565 | Msa0468500:CDS | 35.0% | |
| ATACACTTACCAAAACCCAA+TGG | + | chr3_3:70149621-70149640 | Msa0468500:CDS | 35.0% | |
| ATTGGACATGTCTTACCATT+GGG | - | chr3_3:70149639-70149658 | None:intergenic | 35.0% | |
| TATTGGACATGTCTTACCAT+TGG | - | chr3_3:70149640-70149659 | None:intergenic | 35.0% | |
| ! | ATAGTTTTCACCGTCTCTTT+AGG | - | chr3_3:70149681-70149700 | None:intergenic | 35.0% |
| TGAAAGCAATGTTCACATTC+AGG | - | chr3_3:70149705-70149724 | None:intergenic | 35.0% | |
| ! | ATGCACAATGCATTGATGAA+TGG | + | chr3_3:70149724-70149743 | Msa0468500:CDS | 35.0% |
| GAGGAGAAGTTCTACAAATT+GGG | - | chr3_3:70149770-70149789 | None:intergenic | 35.0% | |
| AGAGGAGAAGTTCTACAAAT+TGG | - | chr3_3:70149771-70149790 | None:intergenic | 35.0% | |
| TTTGTAGAACTTCTCCTCTA+AGG | + | chr3_3:70149772-70149791 | Msa0468500:CDS | 35.0% | |
| !! | GATTTGGGTTGAAGAGGAAA+AGG | - | chr3_3:70147678-70147697 | None:intergenic | 40.0% |
| !! | GTGTTTGATTTGGGTTGAAG+AGG | - | chr3_3:70147684-70147703 | None:intergenic | 40.0% |
| ! | CCACTGCTTGTGTTTGATTT+GGG | - | chr3_3:70147693-70147712 | None:intergenic | 40.0% |
| CGATTCCCATTCCATATAGA+AGG | + | chr3_3:70147772-70147791 | Msa0468500:CDS | 40.0% | |
| ACAAATACATGTGGATACCC+AGG | + | chr3_3:70147802-70147821 | Msa0468500:CDS | 40.0% | |
| CAAATACATGTGGATACCCA+GGG | + | chr3_3:70147803-70147822 | Msa0468500:CDS | 40.0% | |
| !! | AGCTATTGGTTTGTACCTAG+AGG | - | chr3_3:70148063-70148082 | None:intergenic | 40.0% |
| CTTGTCGTCTGTTTGTGATT+TGG | + | chr3_3:70148145-70148164 | Msa0468500:CDS | 40.0% | |
| CTATTATTACCTTGTCGTGG+AGG | - | chr3_3:70148347-70148366 | None:intergenic | 40.0% | |
| ATGAATATGCCGAGCATACA+AGG | + | chr3_3:70148392-70148411 | Msa0468500:intron | 40.0% | |
| GGGTGCATGGTTGAATAAAA+AGG | - | chr3_3:70148551-70148570 | None:intergenic | 40.0% | |
| ! | AAGAATTGGTCTGCGATTCA+CGG | - | chr3_3:70148978-70148997 | None:intergenic | 40.0% |
| TAAATTCTCAACCCATGGAG+AGG | - | chr3_3:70149277-70149296 | None:intergenic | 40.0% | |
| CCATCTAAATTCTCAACCCA+TGG | - | chr3_3:70149282-70149301 | None:intergenic | 40.0% | |
| ! | CCATGGGTTGAGAATTTAGA+TGG | + | chr3_3:70149279-70149298 | Msa0468500:intron | 40.0% |
| ! | TGGGTTGAGAATTTAGATGG+TGG | + | chr3_3:70149282-70149301 | Msa0468500:intron | 40.0% |
| GAAATGAAGCACAACAAAGC+TGG | - | chr3_3:70149433-70149452 | None:intergenic | 40.0% | |
| AAGTTCAGAATTGGTACCCA+TGG | + | chr3_3:70149475-70149494 | Msa0468500:CDS | 40.0% | |
| ! | CATGTCTTACCATTGGGTTT+TGG | - | chr3_3:70149633-70149652 | None:intergenic | 40.0% |
| GATTGTGATGGTAACCTTAG+AGG | - | chr3_3:70149789-70149808 | None:intergenic | 40.0% | |
| !! | GATTTGGGTTGAAGAGGAAA+AGG | - | chr3_3:70147678-70147697 | None:intergenic | 40.0% |
| !! | GTGTTTGATTTGGGTTGAAG+AGG | - | chr3_3:70147684-70147703 | None:intergenic | 40.0% |
| ! | CCACTGCTTGTGTTTGATTT+GGG | - | chr3_3:70147693-70147712 | None:intergenic | 40.0% |
| CGATTCCCATTCCATATAGA+AGG | + | chr3_3:70147772-70147791 | Msa0468500:CDS | 40.0% | |
| ACAAATACATGTGGATACCC+AGG | + | chr3_3:70147802-70147821 | Msa0468500:CDS | 40.0% | |
| CAAATACATGTGGATACCCA+GGG | + | chr3_3:70147803-70147822 | Msa0468500:CDS | 40.0% | |
| !! | AGCTATTGGTTTGTACCTAG+AGG | - | chr3_3:70148063-70148082 | None:intergenic | 40.0% |
| CTTGTCGTCTGTTTGTGATT+TGG | + | chr3_3:70148145-70148164 | Msa0468500:CDS | 40.0% | |
| CTATTATTACCTTGTCGTGG+AGG | - | chr3_3:70148347-70148366 | None:intergenic | 40.0% | |
| ATGAATATGCCGAGCATACA+AGG | + | chr3_3:70148392-70148411 | Msa0468500:intron | 40.0% | |
| GGGTGCATGGTTGAATAAAA+AGG | - | chr3_3:70148551-70148570 | None:intergenic | 40.0% | |
| ! | AAGAATTGGTCTGCGATTCA+CGG | - | chr3_3:70148978-70148997 | None:intergenic | 40.0% |
| TAAATTCTCAACCCATGGAG+AGG | - | chr3_3:70149277-70149296 | None:intergenic | 40.0% | |
| CCATCTAAATTCTCAACCCA+TGG | - | chr3_3:70149282-70149301 | None:intergenic | 40.0% | |
| ! | CCATGGGTTGAGAATTTAGA+TGG | + | chr3_3:70149279-70149298 | Msa0468500:intron | 40.0% |
| ! | TGGGTTGAGAATTTAGATGG+TGG | + | chr3_3:70149282-70149301 | Msa0468500:intron | 40.0% |
| GAAATGAAGCACAACAAAGC+TGG | - | chr3_3:70149433-70149452 | None:intergenic | 40.0% | |
| AAGTTCAGAATTGGTACCCA+TGG | + | chr3_3:70149475-70149494 | Msa0468500:CDS | 40.0% | |
| ! | CATGTCTTACCATTGGGTTT+TGG | - | chr3_3:70149633-70149652 | None:intergenic | 40.0% |
| GATTGTGATGGTAACCTTAG+AGG | - | chr3_3:70149789-70149808 | None:intergenic | 40.0% | |
| CCCAAATCAAACACAAGCAG+TGG | + | chr3_3:70147690-70147709 | Msa0468500:CDS | 45.0% | |
| GCCACTGCTTGTGTTTGATT+TGG | - | chr3_3:70147694-70147713 | None:intergenic | 45.0% | |
| ! | GGATTAGTGGTTCATTCGTG+TGG | - | chr3_3:70147753-70147772 | None:intergenic | 45.0% |
| ! | TGGAATGGGAATCGGATTAG+TGG | - | chr3_3:70147766-70147785 | None:intergenic | 45.0% |
| CATCAAAAGGAGAGCTAGAG+AGG | - | chr3_3:70147984-70148003 | None:intergenic | 45.0% | |
| TGCACAAACACCGTAAGTGA+AGG | - | chr3_3:70148125-70148144 | None:intergenic | 45.0% | |
| TGATTGAACCGGCACGTTAA+CGG | - | chr3_3:70148177-70148196 | None:intergenic | 45.0% | |
| ATGATGATCTCCGGTTGTCA+TGG | + | chr3_3:70148231-70148250 | Msa0468500:CDS | 45.0% | |
| ATGGCGAATTCCATGACAAC+CGG | - | chr3_3:70148244-70148263 | None:intergenic | 45.0% | |
| CTCGAACATAATCGAAGGCA+AGG | - | chr3_3:70148592-70148611 | None:intergenic | 45.0% | |
| !! | TCTGCGATTCACGGTTTTAG+TGG | - | chr3_3:70148969-70148988 | None:intergenic | 45.0% |
| TCAGAATTGGTACCCATGGT+TGG | + | chr3_3:70149479-70149498 | Msa0468500:CDS | 45.0% | |
| AGGTTACCATCACAATCGAG+AGG | + | chr3_3:70149792-70149811 | Msa0468500:CDS | 45.0% | |
| TTACCATCACAATCGAGAGG+TGG | + | chr3_3:70149795-70149814 | Msa0468500:CDS | 45.0% | |
| TTACCACCTCTCGATTGTGA+TGG | - | chr3_3:70149801-70149820 | None:intergenic | 45.0% | |
| CCCAAATCAAACACAAGCAG+TGG | + | chr3_3:70147690-70147709 | Msa0468500:CDS | 45.0% | |
| GCCACTGCTTGTGTTTGATT+TGG | - | chr3_3:70147694-70147713 | None:intergenic | 45.0% | |
| ! | GGATTAGTGGTTCATTCGTG+TGG | - | chr3_3:70147753-70147772 | None:intergenic | 45.0% |
| ! | TGGAATGGGAATCGGATTAG+TGG | - | chr3_3:70147766-70147785 | None:intergenic | 45.0% |
| CATCAAAAGGAGAGCTAGAG+AGG | - | chr3_3:70147984-70148003 | None:intergenic | 45.0% | |
| TGCACAAACACCGTAAGTGA+AGG | - | chr3_3:70148125-70148144 | None:intergenic | 45.0% | |
| TGATTGAACCGGCACGTTAA+CGG | - | chr3_3:70148177-70148196 | None:intergenic | 45.0% | |
| ATGATGATCTCCGGTTGTCA+TGG | + | chr3_3:70148231-70148250 | Msa0468500:CDS | 45.0% | |
| ATGGCGAATTCCATGACAAC+CGG | - | chr3_3:70148244-70148263 | None:intergenic | 45.0% | |
| CTCGAACATAATCGAAGGCA+AGG | - | chr3_3:70148592-70148611 | None:intergenic | 45.0% | |
| !! | TCTGCGATTCACGGTTTTAG+TGG | - | chr3_3:70148969-70148988 | None:intergenic | 45.0% |
| TCAGAATTGGTACCCATGGT+TGG | + | chr3_3:70149479-70149498 | Msa0468500:CDS | 45.0% | |
| AGGTTACCATCACAATCGAG+AGG | + | chr3_3:70149792-70149811 | Msa0468500:CDS | 45.0% | |
| TTACCATCACAATCGAGAGG+TGG | + | chr3_3:70149795-70149814 | Msa0468500:CDS | 45.0% | |
| TTACCACCTCTCGATTGTGA+TGG | - | chr3_3:70149801-70149820 | None:intergenic | 45.0% | |
| ! | GGTTGATACCGTTAACGTGC+CGG | + | chr3_3:70148166-70148185 | Msa0468500:CDS | 50.0% |
| TCATGGAATTCGCCATCGTG+TGG | + | chr3_3:70148248-70148267 | Msa0468500:CDS | 50.0% | |
| ! | TGTGGAAGGTGTGAGTCTCA+TGG | + | chr3_3:70148266-70148285 | Msa0468500:CDS | 50.0% |
| TACAATGTCCCTCCACGACA+AGG | + | chr3_3:70148335-70148354 | Msa0468500:intron | 50.0% | |
| ACATTGACAGGGATTTCCCG+TGG | + | chr3_3:70149373-70149392 | Msa0468500:intron | 50.0% | |
| ! | TATGGCGTAACTTGCACCAC+GGG | - | chr3_3:70149392-70149411 | None:intergenic | 50.0% |
| ! | CTATGGCGTAACTTGCACCA+CGG | - | chr3_3:70149393-70149412 | None:intergenic | 50.0% |
| TACGCCATAGCCATATGTGC+AGG | + | chr3_3:70149403-70149422 | Msa0468500:CDS | 50.0% | |
| ACGCCATAGCCATATGTGCA+GGG | + | chr3_3:70149404-70149423 | Msa0468500:CDS | 50.0% | |
| TTGGTACCCATGGTTGGACT+TGG | + | chr3_3:70149485-70149504 | Msa0468500:CDS | 50.0% | |
| TGGTACCCATGGTTGGACTT+GGG | + | chr3_3:70149486-70149505 | Msa0468500:CDS | 50.0% | |
| ! | ATTGGGCACGAAGCATTCAG+TGG | - | chr3_3:70149753-70149772 | None:intergenic | 50.0% |
| ! | GGTTGATACCGTTAACGTGC+CGG | + | chr3_3:70148166-70148185 | Msa0468500:CDS | 50.0% |
| TCATGGAATTCGCCATCGTG+TGG | + | chr3_3:70148248-70148267 | Msa0468500:CDS | 50.0% | |
| ! | TGTGGAAGGTGTGAGTCTCA+TGG | + | chr3_3:70148266-70148285 | Msa0468500:CDS | 50.0% |
| TACAATGTCCCTCCACGACA+AGG | + | chr3_3:70148335-70148354 | Msa0468500:intron | 50.0% | |
| ACATTGACAGGGATTTCCCG+TGG | + | chr3_3:70149373-70149392 | Msa0468500:intron | 50.0% | |
| ! | TATGGCGTAACTTGCACCAC+GGG | - | chr3_3:70149392-70149411 | None:intergenic | 50.0% |
| ! | CTATGGCGTAACTTGCACCA+CGG | - | chr3_3:70149393-70149412 | None:intergenic | 50.0% |
| TACGCCATAGCCATATGTGC+AGG | + | chr3_3:70149403-70149422 | Msa0468500:CDS | 50.0% | |
| ACGCCATAGCCATATGTGCA+GGG | + | chr3_3:70149404-70149423 | Msa0468500:CDS | 50.0% | |
| TTGGTACCCATGGTTGGACT+TGG | + | chr3_3:70149485-70149504 | Msa0468500:CDS | 50.0% | |
| TGGTACCCATGGTTGGACTT+GGG | + | chr3_3:70149486-70149505 | Msa0468500:CDS | 50.0% | |
| ! | ATTGGGCACGAAGCATTCAG+TGG | - | chr3_3:70149753-70149772 | None:intergenic | 50.0% |
| GGAATTCGCCATCGTGTGGA+AGG | + | chr3_3:70148252-70148271 | Msa0468500:CDS | 55.0% | |
| GACTCACACCTTCCACACGA+TGG | - | chr3_3:70148263-70148282 | None:intergenic | 55.0% | |
| ! | GGAAGGTGTGAGTCTCATGG+TGG | + | chr3_3:70148269-70148288 | Msa0468500:CDS | 55.0% |
| !! | GAGTCTCATGGTGGACGTTG+TGG | + | chr3_3:70148278-70148297 | Msa0468500:intron | 55.0% |
| CGCCATAGCCATATGTGCAG+GGG | + | chr3_3:70149405-70149424 | Msa0468500:CDS | 55.0% | |
| CACCCCTGCACATATGGCTA+TGG | - | chr3_3:70149410-70149429 | None:intergenic | 55.0% | |
| ACGTGCCCAAGTCCAACCAT+GGG | - | chr3_3:70149494-70149513 | None:intergenic | 55.0% | |
| GGAATTCGCCATCGTGTGGA+AGG | + | chr3_3:70148252-70148271 | Msa0468500:CDS | 55.0% | |
| GACTCACACCTTCCACACGA+TGG | - | chr3_3:70148263-70148282 | None:intergenic | 55.0% | |
| ! | GGAAGGTGTGAGTCTCATGG+TGG | + | chr3_3:70148269-70148288 | Msa0468500:CDS | 55.0% |
| !! | GAGTCTCATGGTGGACGTTG+TGG | + | chr3_3:70148278-70148297 | Msa0468500:intron | 55.0% |
| CGCCATAGCCATATGTGCAG+GGG | + | chr3_3:70149405-70149424 | Msa0468500:CDS | 55.0% | |
| CACCCCTGCACATATGGCTA+TGG | - | chr3_3:70149410-70149429 | None:intergenic | 55.0% | |
| ACGTGCCCAAGTCCAACCAT+GGG | - | chr3_3:70149494-70149513 | None:intergenic | 55.0% | |
| AGCTGGCACCCCTGCACATA+TGG | - | chr3_3:70149416-70149435 | None:intergenic | 60.0% | |
| CACGTGCCCAAGTCCAACCA+TGG | - | chr3_3:70149495-70149514 | None:intergenic | 60.0% | |
| AGCTGGCACCCCTGCACATA+TGG | - | chr3_3:70149416-70149435 | None:intergenic | 60.0% | |
| CACGTGCCCAAGTCCAACCA+TGG | - | chr3_3:70149495-70149514 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 70147637 | 70149836 | 70147637 | ID=Msa0468500;Name=Msa0468500 |
| chr3_3 | mRNA | 70147637 | 70149836 | 70147637 | ID=Msa0468500-mRNA-1;Parent=Msa0468500;Name=Msa0468500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0.2|5|0|353 |
| chr3_3 | exon | 70147637 | 70147824 | 70147637 | ID=Msa0468500-mRNA-1:exon:16848;Parent=Msa0468500-mRNA-1 |
| chr3_3 | exon | 70147849 | 70148066 | 70147849 | ID=Msa0468500-mRNA-1:exon:16849;Parent=Msa0468500-mRNA-1 |
| chr3_3 | exon | 70148081 | 70148293 | 70148081 | ID=Msa0468500-mRNA-1:exon:16850;Parent=Msa0468500-mRNA-1 |
| chr3_3 | exon | 70149383 | 70149567 | 70149383 | ID=Msa0468500-mRNA-1:exon:16851;Parent=Msa0468500-mRNA-1 |
| chr3_3 | exon | 70149579 | 70149836 | 70149579 | ID=Msa0468500-mRNA-1:exon:16852;Parent=Msa0468500-mRNA-1 |
| chr3_3 | CDS | 70147637 | 70147824 | 70147637 | ID=Msa0468500-mRNA-1:cds;Parent=Msa0468500-mRNA-1 |
| chr3_3 | CDS | 70147849 | 70148066 | 70147849 | ID=Msa0468500-mRNA-1:cds;Parent=Msa0468500-mRNA-1 |
| chr3_3 | CDS | 70148081 | 70148293 | 70148081 | ID=Msa0468500-mRNA-1:cds;Parent=Msa0468500-mRNA-1 |
| chr3_3 | CDS | 70149383 | 70149567 | 70149383 | ID=Msa0468500-mRNA-1:cds;Parent=Msa0468500-mRNA-1 |
| chr3_3 | CDS | 70149579 | 70149836 | 70149579 | ID=Msa0468500-mRNA-1:cds;Parent=Msa0468500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
