AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376110 MtrunA17_Chr3g0126611 95.103 388 19 0 1 388 1 388 0.0 769
Msa0376110 MtrunA17_Chr8g0347101 39.782 367 206 9 26 387 14 370 1.92e-79 249
Msa0376110 MtrunA17_Chr8g0388231 38.655 357 198 10 37 376 30 382 1.67e-70 227
Msa0376110 MtrunA17_Chr8g0388201 35.925 373 206 12 32 378 29 394 1.73e-61 203
Msa0376110 MtrunA17_Chr5g0396601 31.461 356 212 12 44 376 49 395 2.90e-42 152
Msa0376110 MtrunA17_Chr5g0396611 31.405 363 213 13 39 376 34 385 4.06e-40 146
Msa0376110 MtrunA17_Chr3g0081611 43.478 138 70 2 245 376 18 153 1.26e-34 126
Msa0376110 MtrunA17_Chr5g0396591 32.819 259 161 7 125 376 33 285 4.22e-30 117
Msa0376110 MtrunA17_Chr7g0275601 37.427 171 85 7 221 383 2 158 8.49e-26 102
Msa0376110 MtrunA17_Chr1g0160671 30.943 265 155 10 14 267 9 256 4.96e-25 102
Msa0376110 MtrunA17_Chr1g0158771 33.439 314 166 16 8 315 8 284 3.09e-24 104
Msa0376110 MtrunA17_Chr1g0160771 31.902 326 164 20 8 315 11 296 1.36e-23 102
Msa0376110 MtrunA17_Chr1g0160731 31.206 282 158 14 44 315 37 292 2.54e-23 102
Msa0376110 MtrunA17_Chr1g0160581 29.338 317 190 14 13 315 4 300 4.95e-22 98.2
Msa0376110 MtrunA17_Chr8g0348151 36.913 149 76 4 245 380 20 163 2.71e-19 85.5
Msa0376110 MtrunA17_Chr7g0248831 34.247 146 86 1 245 380 12 157 2.12e-18 82.4
Msa0376110 MtrunA17_Chr4g0037001 28.058 278 163 10 7 265 6 265 2.26e-18 87.0
Msa0376110 MtrunA17_Chr1g0158531 28.090 267 158 11 45 299 37 281 3.49e-18 86.3
Msa0376110 MtrunA17_Chr1g0158051 31.884 207 124 8 31 228 25 223 6.58e-18 85.5
Msa0376110 MtrunA17_Chr1g0158651 27.206 272 156 12 35 293 50 292 6.11e-16 79.7
Msa0376110 MtrunA17_Chr1g0158311 24.809 262 170 10 45 299 38 279 7.78e-16 79.3
Msa0376110 MtrunA17_Chr1g0177041 43.750 80 42 2 303 380 74 152 1.13e-15 74.3
Msa0376110 MtrunA17_Chr1g0158181 28.696 230 140 8 38 255 56 273 3.30e-15 77.4
Msa0376110 MtrunA17_Chr1g0157801 28.641 206 127 7 31 228 24 217 7.73e-15 76.3
Msa0376110 MtrunA17_Chr5g0399521 31.183 186 111 8 43 220 27 203 7.99e-15 73.6
Msa0376110 MtrunA17_Chr3g0128771 37.805 82 51 0 301 382 89 170 1.52e-14 71.2
Msa0376110 MtrunA17_Chr1g0158621 40.000 110 55 5 35 135 33 140 2.53e-14 70.5
Msa0376110 MtrunA17_Chr5g0406031 31.897 116 74 1 263 373 116 231 4.98e-14 71.2
Msa0376110 MtrunA17_Chr1g0157971 24.839 310 207 10 31 329 26 320 5.03e-14 73.6
Msa0376110 MtrunA17_Chr8g0383871 40.845 71 41 1 303 373 112 181 6.79e-14 70.5
Msa0376110 MtrunA17_Chr1g0198201 36.585 82 51 1 303 384 61 141 8.65e-14 70.1
Msa0376110 MtrunA17_Chr8g0383921 40.845 71 41 1 303 373 111 180 9.86e-14 69.7
Msa0376110 MtrunA17_Chr1g0158101 28.708 209 131 8 38 235 34 235 1.52e-13 72.0
Msa0376110 MtrunA17_Chr8g0383881 39.437 71 42 1 303 373 103 172 5.79e-13 67.8
Msa0376110 MtrunA17_Chr8g0383941 37.333 75 46 1 299 373 103 176 6.41e-13 67.8
Msa0376110 MtrunA17_Chr5g0413841 39.189 74 43 1 302 375 115 186 6.75e-13 69.3
Msa0376110 MtrunA17_Chr8g0383861 39.437 71 42 1 303 373 113 182 8.08e-13 67.4
Msa0376110 MtrunA17_Chr7g0273051 37.647 85 52 1 303 386 91 175 1.07e-12 68.9
Msa0376110 MtrunA17_Chr7g0248841 39.080 87 41 3 305 381 68 152 1.08e-12 65.9
Msa0376110 MtrunA17_Chr4g0027761 42.105 76 39 1 298 373 95 165 1.25e-12 66.2
Msa0376110 MtrunA17_Chr1g0157781 26.693 251 163 9 28 266 21 262 1.40e-12 69.3
Msa0376110 MtrunA17_Chr7g0244851 38.889 90 46 3 300 386 78 161 1.54e-12 65.5
Msa0376110 MtrunA17_Chr4g0050041 37.374 99 54 3 289 381 110 206 1.68e-12 68.2
Msa0376110 MtrunA17_Chr6g0486651 43.056 72 39 1 302 373 92 161 1.94e-12 68.2
Msa0376110 MtrunA17_Chr5g0409211 46.429 56 30 0 320 375 83 138 2.08e-12 65.1
Msa0376110 MtrunA17_Chr3g0129671 37.500 72 44 1 302 373 108 178 2.45e-12 66.2
Msa0376110 MtrunA17_Chr5g0407431 26.619 139 89 2 236 373 21 147 2.79e-12 65.9
Msa0376110 MtrunA17_Chr3g0132491 26.812 138 91 2 247 383 60 188 2.83e-12 67.8
Msa0376110 MtrunA17_Chr1g0191601 36.471 85 53 1 303 386 98 182 3.52e-12 67.4
Msa0376110 MtrunA17_Chr1g0197031 28.169 142 96 3 238 377 11 148 3.63e-12 64.3
Msa0376110 MtrunA17_Chr8g0370171 40.278 72 43 0 303 374 70 141 5.43e-12 64.7
Msa0376110 MtrunA17_Chr3g0133001 36.111 72 44 1 302 373 129 198 5.44e-12 67.0
Msa0376110 MtrunA17_Chr5g0426881 32.479 117 69 3 260 374 78 186 6.21e-12 66.6
Msa0376110 MtrunA17_Chr5g0409201 42.424 66 32 1 316 381 84 143 7.64e-12 63.2
Msa0376110 MtrunA17_Chr7g0246761 29.771 131 87 4 255 384 16 142 8.11e-12 63.9
Msa0376110 MtrunA17_Chr8g0366561 30.769 130 80 2 250 375 63 186 9.47e-12 65.9
Msa0376110 MtrunA17_Chr8g0364881 37.838 74 44 1 302 375 67 138 1.07e-11 65.5
Msa0376110 MtrunA17_Chr8g0371291 34.118 85 48 2 289 373 146 222 1.70e-11 63.5
Msa0376110 MtrunA17_Chr2g0295571 40.698 86 47 4 299 384 89 170 1.81e-11 64.3
Msa0376110 MtrunA17_Chr5g0437361 31.481 108 68 1 268 375 46 147 1.90e-11 62.4
Msa0376110 MtrunA17_Chr7g0274721 33.721 86 54 1 289 374 54 136 2.05e-11 62.4
Msa0376110 MtrunA17_Chr5g0444141 33.028 109 69 2 268 374 157 263 2.24e-11 63.9
Msa0376110 MtrunA17_Chr4g0013561 34.783 92 51 2 292 377 68 156 2.42e-11 63.2
Msa0376110 MtrunA17_Chr5g0427431 35.897 78 47 2 296 373 128 202 2.57e-11 65.1
Msa0376110 MtrunA17_Chr6g0451161 35.897 78 48 1 298 375 128 203 2.82e-11 64.7
Msa0376110 MtrunA17_Chr2g0297011 31.618 136 81 3 238 373 21 144 3.19e-11 61.6
Msa0376110 MtrunA17_Chr7g0274741 36.986 73 45 1 303 374 70 142 4.19e-11 61.6
Msa0376110 MtrunA17_Chr4g0059281 28.244 131 87 2 249 374 47 175 4.60e-11 63.5
Msa0376110 MtrunA17_Chr1g0184171 29.412 136 86 5 246 375 43 174 5.51e-11 63.5
Msa0376110 MtrunA17_Chr4g0030831 35.065 77 50 0 302 378 83 159 6.14e-11 60.8
Msa0376110 MtrunA17_Chr8g0381731 34.940 83 50 2 293 373 136 216 6.42e-11 62.8
Msa0376110 MtrunA17_Chr5g0444161 29.464 112 75 2 265 374 119 228 7.77e-11 62.0
Msa0376110 MtrunA17_Chr2g0300331 56.818 44 19 0 331 374 169 212 7.99e-11 62.0
Msa0376110 MtrunA17_Chr1g0197021 39.726 73 40 2 311 380 77 148 8.20e-11 60.1
Msa0376110 MtrunA17_Chr7g0274731 46.000 50 27 0 325 374 108 157 8.52e-11 60.8
Msa0376110 MtrunA17_Chr4g0060981 33.333 78 49 1 296 373 142 216 8.64e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376110 AT5G53110.1 47.578 351 174 9 35 379 32 378 8.05e-106 317
Msa0376110 AT2G46494.1 39.883 341 183 8 38 375 39 360 7.55e-71 226
Msa0376110 AT2G46495.1 35.328 351 213 9 31 376 24 365 1.99e-66 215
Msa0376110 AT2G46495.2 35.143 350 187 7 31 376 24 337 5.16e-65 211
Msa0376110 AT1G28040.1 38.127 299 166 7 88 375 7 297 5.81e-58 191
Msa0376110 AT2G25410.1 33.426 359 215 13 33 378 29 376 2.51e-56 189
Msa0376110 AT5G36001.1 31.006 358 181 9 31 387 28 320 2.53e-46 161
Msa0376110 AT5G07040.1 43.972 141 71 3 237 376 6 139 1.44e-32 120
Msa0376110 AT2G46493.1 31.707 205 109 4 175 375 5 182 3.88e-28 109
Msa0376110 AT5G36001.2 30.732 205 119 6 31 234 28 210 5.86e-25 102
Msa0376110 AT3G61550.1 36.747 166 80 3 243 383 23 188 4.28e-24 99.4
Msa0376110 AT2G35910.1 35.000 140 81 2 245 380 63 196 6.99e-19 85.1
Msa0376110 AT2G46160.1 36.250 160 78 4 245 383 34 190 6.08e-18 82.4
Msa0376110 AT2G46160.2 36.250 160 78 4 245 383 34 190 6.08e-18 82.4
Msa0376110 AT5G06490.1 30.247 162 88 4 245 383 22 181 6.43e-16 76.3
Msa0376110 AT5G66070.5 34.109 129 72 4 254 373 94 218 2.08e-14 72.4
Msa0376110 AT5G66070.1 34.109 129 72 4 254 373 94 218 2.08e-14 72.4
Msa0376110 AT4G09110.1 42.683 82 46 1 303 383 94 175 3.66e-14 73.2
Msa0376110 AT4G09120.1 42.683 82 46 1 303 383 94 175 5.52e-14 72.8
Msa0376110 AT2G17730.1 31.624 117 74 2 263 373 122 238 6.68e-14 71.2
Msa0376110 AT4G09130.1 43.836 73 40 1 303 374 91 163 2.08e-13 71.2
Msa0376110 AT1G35330.1 33.562 146 84 6 252 391 46 184 3.29e-13 70.5
Msa0376110 AT5G66070.2 39.726 73 40 1 301 373 174 242 3.66e-13 69.3
Msa0376110 AT1G14200.1 37.363 91 51 3 283 373 66 150 4.13e-13 67.8
Msa0376110 AT4G35840.1 30.769 117 75 2 263 373 117 233 5.86e-13 68.6
Msa0376110 AT5G05810.1 37.500 72 43 1 302 373 119 188 7.34e-13 70.1
Msa0376110 AT1G49230.1 41.333 75 42 2 299 373 101 173 1.14e-12 67.4
Msa0376110 AT2G20030.1 43.056 72 39 1 302 373 97 166 1.58e-12 68.9
Msa0376110 AT2G35000.1 35.135 111 65 4 284 391 86 192 1.75e-12 68.6
Msa0376110 AT1G18390.2 28.395 243 140 12 1 222 1 230 2.02e-12 69.3
Msa0376110 AT3G48030.2 37.975 79 46 2 298 375 97 173 2.31e-12 67.4
Msa0376110 AT1G49200.1 34.667 75 48 1 299 373 105 178 2.38e-12 66.6
Msa0376110 AT3G10910.1 30.822 146 96 2 235 377 17 160 2.89e-12 65.5
Msa0376110 AT4G28890.1 41.667 72 40 1 302 373 96 165 3.40e-12 68.2
Msa0376110 AT3G48030.1 37.975 79 46 2 298 375 175 251 4.07e-12 67.4
Msa0376110 AT5G17600.1 31.081 148 83 5 250 387 62 200 4.57e-12 67.4
Msa0376110 AT2G27940.1 37.500 80 47 1 298 377 110 186 4.77e-12 65.9
Msa0376110 AT4G09100.1 39.189 74 44 1 303 375 56 129 5.02e-12 63.5
Msa0376110 AT2G42350.1 37.778 90 45 3 303 386 75 159 5.54e-12 65.1
Msa0376110 AT3G05200.1 38.356 73 44 1 303 374 99 171 8.15e-12 66.6
Msa0376110 AT5G27420.1 40.260 77 45 1 299 374 91 167 9.04e-12 66.6
Msa0376110 AT1G49210.1 36.620 71 44 1 303 373 108 177 1.36e-11 64.3
Msa0376110 AT3G16720.1 37.838 74 43 1 301 374 92 162 1.64e-11 65.1
Msa0376110 AT1G04360.1 38.750 80 40 2 303 375 101 178 1.85e-11 65.5
Msa0376110 AT3G18773.1 38.028 71 43 1 303 373 103 172 2.19e-11 63.5
Msa0376110 AT4G17905.2 36.842 76 48 0 299 374 149 224 2.34e-11 65.1
Msa0376110 AT5G05280.1 44.286 70 36 2 325 391 107 176 2.47e-11 62.4
Msa0376110 AT4G17905.1 36.842 76 48 0 299 374 123 198 2.90e-11 64.3
Msa0376110 AT5G47610.1 41.270 63 36 1 313 375 90 151 3.50e-11 62.0
Msa0376110 AT4G40070.1 36.782 87 52 2 290 374 82 167 3.51e-11 64.3
Msa0376110 AT2G35420.1 41.667 72 40 1 302 373 76 145 3.68e-11 63.5
Msa0376110 AT1G22500.1 34.783 92 57 2 294 383 80 170 3.81e-11 64.7
Msa0376110 AT4G10160.1 36.709 79 47 1 303 381 72 147 3.83e-11 62.8
Msa0376110 AT5G57750.1 28.037 107 55 3 302 391 94 195 7.38e-11 62.0
Msa0376110 AT5G01880.1 35.802 81 50 1 299 379 75 153 8.08e-11 60.5
Msa0376110 AT2G34990.2 36.842 76 47 1 299 373 85 160 8.32e-11 63.2
Msa0376110 AT1G76410.1 31.933 119 68 3 258 373 38 146 8.75e-11 61.2
Msa0376110 AT2G34990.1 35.955 89 54 2 286 373 52 138 8.77e-11 62.8

Find 84 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGGAGAAGTTCTACAAAT+TGG 0.229386 3_1:+76137649 None:intergenic
GAAACAAATTAGGATGAGTT+TGG 0.247580 3_1:+76139770 None:intergenic
TTTCCATGTAAGGTAGATTA+AGG 0.247749 3_1:+76139556 None:intergenic
TTGAGTGAGAGAAGTTGTTT+TGG 0.275761 3_1:+76139465 None:intergenic
GCCACTGCTTGTGTTTGATT+TGG 0.289245 3_1:+76139732 None:intergenic
TTTGGGTATGATTCAATTGT+TGG 0.299282 3_1:+76137838 None:intergenic
CCACTGCTTGTGTTTGATTT+GGG 0.306529 3_1:+76139733 None:intergenic
AGAGGAAAAGGAAACAAATT+AGG 0.345874 3_1:+76139760 None:intergenic
TGAAAGCAATGTTCACATTC+AGG 0.369028 3_1:+76137715 None:intergenic
CATGTCTTACCATTGGGTTT+TGG 0.369951 3_1:+76137787 None:intergenic
AGCTGGCACCCCTGCACATA+TGG 0.376864 3_1:+76138005 None:intergenic
AAACAAATTAGGATGAGTTT+GGG 0.376952 3_1:+76139771 None:intergenic
CTTGTCGTCTGTTTGTGATT+TGG 0.386576 3_1:-76139277 Msa0376110:CDS
TTGGTACCCATGGTTGGACT+TGG 0.389757 3_1:-76137933 Msa0376110:CDS
GGTAAATTGTTGATAGTAAA+CGG 0.390917 3_1:+76139419 None:intergenic
TTTGTAGAACTTCTCCTCTA+AGG 0.391113 3_1:-76137645 Msa0376110:CDS
AAGGTAGATTAAGGAGTGTT+TGG 0.396216 3_1:+76139565 None:intergenic
GATTGTGATGGTAACCTTAG+AGG 0.403478 3_1:+76137631 None:intergenic
CTTCTATATGGAATGGGAAT+CGG 0.405821 3_1:+76139652 None:intergenic
AATTAGGATGAGTTTGGGAT+TGG 0.407156 3_1:+76139776 None:intergenic
CGATTCCCATTCCATATAGA+AGG 0.408041 3_1:-76139651 Msa0376110:CDS
AGTGTCTAAGCATGTTTCTA+TGG 0.409320 3_1:+76139701 None:intergenic
CATGAATACACCAACACTTC+AGG 0.414069 3_1:-76137871 Msa0376110:CDS
TGATTGAACCGGCACGTTAA+CGG 0.417888 3_1:+76139248 None:intergenic
ATTAGGATGAGTTTGGGATT+GGG 0.421358 3_1:+76139777 None:intergenic
GAGGAGAAGTTCTACAAATT+GGG 0.424244 3_1:+76137650 None:intergenic
ATTGGACATGTCTTACCATT+GGG 0.427757 3_1:+76137781 None:intergenic
GCTTCATTTCACTATTAAGC+TGG 0.445778 3_1:-76137975 Msa0376110:CDS
TATTGGACATGTCTTACCAT+TGG 0.455747 3_1:+76137780 None:intergenic
TGCATAATACTTTGAACCCT+GGG 0.459124 3_1:+76139604 None:intergenic
TAATCACTAAGACAAGCTAT+TGG 0.462186 3_1:+76139348 None:intergenic
ATATATTCTGACAAGCATAT+TGG 0.471017 3_1:+76137763 None:intergenic
CACCCCTGCACATATGGCTA+TGG 0.474021 3_1:+76138011 None:intergenic
ATATGTAGCAAGTTCAGAAT+TGG 0.477062 3_1:-76137952 Msa0376110:CDS
GATTTGGGTTGAAGAGGAAA+AGG 0.480262 3_1:+76139748 None:intergenic
ATGCACAATGCATTGATGAA+TGG 0.486845 3_1:-76137693 Msa0376110:CDS
TGGAATGGGAATCGGATTAG+TGG 0.500897 3_1:+76139660 None:intergenic
ACTCCTTAATCTACCTTACA+TGG 0.500945 3_1:-76139559 Msa0376110:CDS
TGATAGTAAACGGCATCAAA+AGG 0.512565 3_1:+76139429 None:intergenic
TATGGCGTAACTTGCACCAC+GGG 0.514622 3_1:+76138029 None:intergenic
ATGGCGAATTCCATGACAAC+CGG 0.515784 3_1:+76139181 None:intergenic
GGTTGATACCGTTAACGTGC+CGG 0.519040 3_1:-76139256 Msa0376110:CDS
TTGCATAATACTTTGAACCC+TGG 0.524383 3_1:+76139603 None:intergenic
GAAATGAAGCACAACAAAGC+TGG 0.534895 3_1:+76137988 None:intergenic
GTACTATTATTACCTTGTCG+TGG 0.537383 3_1:+76139075 None:intergenic
TACGCCATAGCCATATGTGC+AGG 0.538697 3_1:-76138015 Msa0376110:CDS
CATCAAAAGGAGAGCTAGAG+AGG 0.546542 3_1:+76139442 None:intergenic
ACTTGGAATATCTTACCTCT+AGG 0.548359 3_1:-76139377 Msa0376110:CDS
TGGTACCCATGGTTGGACTT+GGG 0.548632 3_1:-76137932 Msa0376110:CDS
TCAGAATTGGTACCCATGGT+TGG 0.553561 3_1:-76137939 Msa0376110:CDS
AAGTTCAGAATTGGTACCCA+TGG 0.555958 3_1:-76137943 Msa0376110:CDS
GGAATTCGCCATCGTGTGGA+AGG 0.557962 3_1:-76139170 Msa0376110:CDS
CACGTGCCCAAGTCCAACCA+TGG 0.566448 3_1:+76137926 None:intergenic
ACAAATACATGTGGATACCC+AGG 0.571175 3_1:-76139621 Msa0376110:CDS
CTGAATTGAATGATGATCTC+CGG 0.571320 3_1:-76139200 Msa0376110:CDS
GTGTTTGATTTGGGTTGAAG+AGG 0.577317 3_1:+76139742 None:intergenic
GGATTAGTGGTTCATTCGTG+TGG 0.578820 3_1:+76139673 None:intergenic
TATTATTACCTTGTCGTGGA+GGG 0.602530 3_1:+76139079 None:intergenic
CCCAAATCAAACACAAGCAG+TGG 0.605855 3_1:-76139733 Msa0376110:CDS
TCATGGAATTCGCCATCGTG+TGG 0.608164 3_1:-76139174 Msa0376110:CDS
ATGATGATCTCCGGTTGTCA+TGG 0.609684 3_1:-76139191 Msa0376110:CDS
CATGTATAAATTAAGTATTG+TGG 0.610369 3_1:+76137593 None:intergenic
TACAATGTCCCTCCACGACA+AGG 0.613340 3_1:-76139087 Msa0376110:intron
ACGCCATAGCCATATGTGCA+GGG 0.615668 3_1:-76138014 Msa0376110:CDS
GAGTCTCATGGTGGACGTTG+TGG 0.618506 3_1:-76139144 Msa0376110:CDS
TGTGGAAGGTGTGAGTCTCA+TGG 0.620175 3_1:-76139156 Msa0376110:CDS
TGCACAAACACCGTAAGTGA+AGG 0.621284 3_1:+76139300 None:intergenic
CTATTATTACCTTGTCGTGG+AGG 0.622703 3_1:+76139078 None:intergenic
CTTATCAAGACCTGAAGTGT+TGG 0.623889 3_1:+76137861 None:intergenic
GGAAAACATACAAATACATG+TGG 0.627739 3_1:-76139630 Msa0376110:CDS
CGCCATAGCCATATGTGCAG+GGG 0.628415 3_1:-76138013 Msa0376110:CDS
CAAATACATGTGGATACCCA+GGG 0.631304 3_1:-76139620 Msa0376110:CDS
TTACCACCTCTCGATTGTGA+TGG 0.632507 3_1:+76137619 None:intergenic
AGCTATTGGTTTGTACCTAG+AGG 0.637453 3_1:+76139362 None:intergenic
ATTGGGCACGAAGCATTCAG+TGG 0.638566 3_1:+76137667 None:intergenic
AGAATATATGCCTAAAGAGA+CGG 0.642075 3_1:-76137749 Msa0376110:CDS
GACTCACACCTTCCACACGA+TGG 0.651360 3_1:+76139162 None:intergenic
ACGTGCCCAAGTCCAACCAT+GGG 0.657557 3_1:+76137927 None:intergenic
ACATTGACAGGGATTTCCCG+TGG 0.660325 3_1:-76138045 Msa0376110:intron
CTATGGCGTAACTTGCACCA+CGG 0.660502 3_1:+76138028 None:intergenic
ATACACTTACCAAAACCCAA+TGG 0.677744 3_1:-76137796 Msa0376110:CDS
AGGTTACCATCACAATCGAG+AGG 0.703610 3_1:-76137625 Msa0376110:CDS
TTACCATCACAATCGAGAGG+TGG 0.706107 3_1:-76137622 Msa0376110:CDS
GGAAGGTGTGAGTCTCATGG+TGG 0.729696 3_1:-76139153 Msa0376110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATGTAAAAATTTAATAAA+AGG + chr3_1:76139110-76139129 None:intergenic 10.0%
!! TTAAAAATGTTTATTTACTA+CGG + chr3_1:76139166-76139185 None:intergenic 10.0%
!! AGATGTAAAAATTTAATAAA+AGG + chr3_1:76139110-76139129 None:intergenic 10.0%
!! TTAAAAATGTTTATTTACTA+CGG + chr3_1:76139166-76139185 None:intergenic 10.0%
!! ATATAATTAAAATACTCTTG+TGG - chr3_1:76138876-76138895 Msa0376110:intron 15.0%
!! TATAATTAAAATACTCTTGT+GGG - chr3_1:76138877-76138896 Msa0376110:intron 15.0%
!! CAAATGCTAAAAATTTAAAA+AGG + chr3_1:76138998-76139017 None:intergenic 15.0%
!! ATATAATTAAAATACTCTTG+TGG - chr3_1:76138876-76138895 Msa0376110:intron 15.0%
!! TATAATTAAAATACTCTTGT+GGG - chr3_1:76138877-76138896 Msa0376110:intron 15.0%
!! CAAATGCTAAAAATTTAAAA+AGG + chr3_1:76138998-76139017 None:intergenic 15.0%
!! TCTTGCGTATAAAAAAATAT+TGG + chr3_1:76138403-76138422 None:intergenic 20.0%
!!! AATATTTTTTTATACGCAAG+AGG - chr3_1:76138402-76138421 Msa0376110:intron 20.0%
!! GTAATATGATTAAAATGGTT+AGG + chr3_1:76138600-76138619 None:intergenic 20.0%
!! AAGGAGTAATATGATTAAAA+TGG + chr3_1:76138605-76138624 None:intergenic 20.0%
!!! GCTGAATTTTTTAATCATTT+TGG - chr3_1:76138911-76138930 Msa0376110:intron 20.0%
!! TTAAATTGTTCTTGAAGAAT+TGG + chr3_1:76138961-76138980 None:intergenic 20.0%
!! TCTTGCGTATAAAAAAATAT+TGG + chr3_1:76138403-76138422 None:intergenic 20.0%
!!! AATATTTTTTTATACGCAAG+AGG - chr3_1:76138402-76138421 Msa0376110:intron 20.0%
!! GTAATATGATTAAAATGGTT+AGG + chr3_1:76138600-76138619 None:intergenic 20.0%
!! AAGGAGTAATATGATTAAAA+TGG + chr3_1:76138605-76138624 None:intergenic 20.0%
!!! GCTGAATTTTTTAATCATTT+TGG - chr3_1:76138911-76138930 Msa0376110:intron 20.0%
!! TTAAATTGTTCTTGAAGAAT+TGG + chr3_1:76138961-76138980 None:intergenic 20.0%
! AAACAAATTAGGATGAGTTT+GGG + chr3_1:76137621-76137640 None:intergenic 25.0%
!! TTGTATGTTTTCCTTCTATA+TGG + chr3_1:76137752-76137771 None:intergenic 25.0%
!! ATACTAAGATTTTCCATGTA+AGG + chr3_1:76137846-76137865 None:intergenic 25.0%
!!! GTTTGGCATAGTTTATTTTT+TGG + chr3_1:76137869-76137888 None:intergenic 25.0%
!!! GGTAAATTGTTGATAGTAAA+CGG + chr3_1:76137973-76137992 None:intergenic 25.0%
!! CAAAAATGAATTGGTTCAAA+TGG + chr3_1:76138447-76138466 None:intergenic 25.0%
!! CATTTGAACCAATTCATTTT+TGG - chr3_1:76138445-76138464 Msa0376110:intron 25.0%
! AATGTAAATGATAAACGAGA+GGG + chr3_1:76138492-76138511 None:intergenic 25.0%
! AAATGTAAATGATAAACGAG+AGG + chr3_1:76138493-76138512 None:intergenic 25.0%
! GGAGAGAAAAAATATACTAA+GGG + chr3_1:76138539-76138558 None:intergenic 25.0%
! AGGAGAGAAAAAATATACTA+AGG + chr3_1:76138540-76138559 None:intergenic 25.0%
! ATAGCTGATTGATTAAACTA+AGG + chr3_1:76138624-76138643 None:intergenic 25.0%
! TTAATCAATCAGCTATCTTA+AGG - chr3_1:76138628-76138647 Msa0376110:intron 25.0%
!! TCCTTATTGTTTAAGTTTGA+AGG - chr3_1:76138659-76138678 Msa0376110:intron 25.0%
!! CCTTATTGTTTAAGTTTGAA+GGG - chr3_1:76138660-76138679 Msa0376110:intron 25.0%
! TTCCATATCTAATTAGTCAT+GGG + chr3_1:76138750-76138769 None:intergenic 25.0%
! TTTCCATATCTAATTAGTCA+TGG + chr3_1:76138751-76138770 None:intergenic 25.0%
! TCTTTCTCAACAAAAATTGT+CGG - chr3_1:76139018-76139037 Msa0376110:intron 25.0%
!! ATGAAATTTGAAACATTGAC+AGG - chr3_1:76139332-76139351 Msa0376110:CDS 25.0%
!! TGAAATTTGAAACATTGACA+GGG - chr3_1:76139333-76139352 Msa0376110:CDS 25.0%
! ATATATTCTGACAAGCATAT+TGG + chr3_1:76139629-76139648 None:intergenic 25.0%
! AAACAAATTAGGATGAGTTT+GGG + chr3_1:76137621-76137640 None:intergenic 25.0%
!! TTGTATGTTTTCCTTCTATA+TGG + chr3_1:76137752-76137771 None:intergenic 25.0%
!! ATACTAAGATTTTCCATGTA+AGG + chr3_1:76137846-76137865 None:intergenic 25.0%
!!! GTTTGGCATAGTTTATTTTT+TGG + chr3_1:76137869-76137888 None:intergenic 25.0%
!!! GGTAAATTGTTGATAGTAAA+CGG + chr3_1:76137973-76137992 None:intergenic 25.0%
!! CAAAAATGAATTGGTTCAAA+TGG + chr3_1:76138447-76138466 None:intergenic 25.0%
!! CATTTGAACCAATTCATTTT+TGG - chr3_1:76138445-76138464 Msa0376110:intron 25.0%
! AATGTAAATGATAAACGAGA+GGG + chr3_1:76138492-76138511 None:intergenic 25.0%
! AAATGTAAATGATAAACGAG+AGG + chr3_1:76138493-76138512 None:intergenic 25.0%
! GGAGAGAAAAAATATACTAA+GGG + chr3_1:76138539-76138558 None:intergenic 25.0%
! AGGAGAGAAAAAATATACTA+AGG + chr3_1:76138540-76138559 None:intergenic 25.0%
! ATAGCTGATTGATTAAACTA+AGG + chr3_1:76138624-76138643 None:intergenic 25.0%
! TTAATCAATCAGCTATCTTA+AGG - chr3_1:76138628-76138647 Msa0376110:intron 25.0%
!! TCCTTATTGTTTAAGTTTGA+AGG - chr3_1:76138659-76138678 Msa0376110:intron 25.0%
!! CCTTATTGTTTAAGTTTGAA+GGG - chr3_1:76138660-76138679 Msa0376110:intron 25.0%
! TTCCATATCTAATTAGTCAT+GGG + chr3_1:76138750-76138769 None:intergenic 25.0%
! TTTCCATATCTAATTAGTCA+TGG + chr3_1:76138751-76138770 None:intergenic 25.0%
! TCTTTCTCAACAAAAATTGT+CGG - chr3_1:76139018-76139037 Msa0376110:intron 25.0%
!! ATGAAATTTGAAACATTGAC+AGG - chr3_1:76139332-76139351 Msa0376110:CDS 25.0%
!! TGAAATTTGAAACATTGACA+GGG - chr3_1:76139333-76139352 Msa0376110:CDS 25.0%
! ATATATTCTGACAAGCATAT+TGG + chr3_1:76139629-76139648 None:intergenic 25.0%
GAAACAAATTAGGATGAGTT+TGG + chr3_1:76137622-76137641 None:intergenic 30.0%
AGAGGAAAAGGAAACAAATT+AGG + chr3_1:76137632-76137651 None:intergenic 30.0%
! GTTTTCCTTCTATATGGAAT+GGG + chr3_1:76137746-76137765 None:intergenic 30.0%
! TGTTTTCCTTCTATATGGAA+TGG + chr3_1:76137747-76137766 None:intergenic 30.0%
GGAAAACATACAAATACATG+TGG - chr3_1:76137759-76137778 Msa0376110:CDS 30.0%
TTTCCATGTAAGGTAGATTA+AGG + chr3_1:76137836-76137855 None:intergenic 30.0%
GTTCACAAAAAGTTCTTGTT+TGG + chr3_1:76137886-76137905 None:intergenic 30.0%
GTTGTATGAGCAGTTAAAAA+AGG + chr3_1:76137994-76138013 None:intergenic 30.0%
!! TTTTAACTGCTCATACAACT+TGG - chr3_1:76137995-76138014 Msa0376110:CDS 30.0%
TAATCACTAAGACAAGCTAT+TGG + chr3_1:76138044-76138063 None:intergenic 30.0%
TGTTGCAAAAATGTTGTACT+TGG + chr3_1:76138069-76138088 None:intergenic 30.0%
GACAACACTTGATCAAAAAA+CGG + chr3_1:76138167-76138186 None:intergenic 30.0%
!! TTGAACCAATTCATTTTTGG+TGG - chr3_1:76138448-76138467 Msa0376110:intron 30.0%
TTGATCCACCAAAAATGAAT+TGG + chr3_1:76138456-76138475 None:intergenic 30.0%
! AAAAATATACTAAGGGTGCA+TGG + chr3_1:76138532-76138551 None:intergenic 30.0%
CCCTTCAAACTTAAACAATA+AGG + chr3_1:76138663-76138682 None:intergenic 30.0%
TTCCCATGACTAATTAGATA+TGG - chr3_1:76138745-76138764 Msa0376110:intron 30.0%
! AATTTGAAGTTTCAAACAGC+AGG - chr3_1:76138769-76138788 Msa0376110:intron 30.0%
! ATTTGAAGTTTCAAACAGCA+GGG - chr3_1:76138770-76138789 Msa0376110:intron 30.0%
ATATGTAGCAAGTTCAGAAT+TGG - chr3_1:76139437-76139456 Msa0376110:CDS 30.0%
TTTGGGTATGATTCAATTGT+TGG + chr3_1:76139554-76139573 None:intergenic 30.0%
TCATACCCAAAAATAGTGAT+AGG - chr3_1:76139563-76139582 Msa0376110:CDS 30.0%
!! CATCACCTATCACTATTTTT+GGG + chr3_1:76139571-76139590 None:intergenic 30.0%
! TCATCACCTATCACTATTTT+TGG + chr3_1:76139572-76139591 None:intergenic 30.0%
AGAATATATGCCTAAAGAGA+CGG - chr3_1:76139640-76139659 Msa0376110:CDS 30.0%
GAAACAAATTAGGATGAGTT+TGG + chr3_1:76137622-76137641 None:intergenic 30.0%
AGAGGAAAAGGAAACAAATT+AGG + chr3_1:76137632-76137651 None:intergenic 30.0%
! GTTTTCCTTCTATATGGAAT+GGG + chr3_1:76137746-76137765 None:intergenic 30.0%
! TGTTTTCCTTCTATATGGAA+TGG + chr3_1:76137747-76137766 None:intergenic 30.0%
GGAAAACATACAAATACATG+TGG - chr3_1:76137759-76137778 Msa0376110:CDS 30.0%
TTTCCATGTAAGGTAGATTA+AGG + chr3_1:76137836-76137855 None:intergenic 30.0%
GTTCACAAAAAGTTCTTGTT+TGG + chr3_1:76137886-76137905 None:intergenic 30.0%
GTTGTATGAGCAGTTAAAAA+AGG + chr3_1:76137994-76138013 None:intergenic 30.0%
!! TTTTAACTGCTCATACAACT+TGG - chr3_1:76137995-76138014 Msa0376110:CDS 30.0%
TAATCACTAAGACAAGCTAT+TGG + chr3_1:76138044-76138063 None:intergenic 30.0%
TGTTGCAAAAATGTTGTACT+TGG + chr3_1:76138069-76138088 None:intergenic 30.0%
GACAACACTTGATCAAAAAA+CGG + chr3_1:76138167-76138186 None:intergenic 30.0%
!! TTGAACCAATTCATTTTTGG+TGG - chr3_1:76138448-76138467 Msa0376110:intron 30.0%
TTGATCCACCAAAAATGAAT+TGG + chr3_1:76138456-76138475 None:intergenic 30.0%
! AAAAATATACTAAGGGTGCA+TGG + chr3_1:76138532-76138551 None:intergenic 30.0%
CCCTTCAAACTTAAACAATA+AGG + chr3_1:76138663-76138682 None:intergenic 30.0%
TTCCCATGACTAATTAGATA+TGG - chr3_1:76138745-76138764 Msa0376110:intron 30.0%
! AATTTGAAGTTTCAAACAGC+AGG - chr3_1:76138769-76138788 Msa0376110:intron 30.0%
! ATTTGAAGTTTCAAACAGCA+GGG - chr3_1:76138770-76138789 Msa0376110:intron 30.0%
ATATGTAGCAAGTTCAGAAT+TGG - chr3_1:76139437-76139456 Msa0376110:CDS 30.0%
TTTGGGTATGATTCAATTGT+TGG + chr3_1:76139554-76139573 None:intergenic 30.0%
TCATACCCAAAAATAGTGAT+AGG - chr3_1:76139563-76139582 Msa0376110:CDS 30.0%
!! CATCACCTATCACTATTTTT+GGG + chr3_1:76139571-76139590 None:intergenic 30.0%
! TCATCACCTATCACTATTTT+TGG + chr3_1:76139572-76139591 None:intergenic 30.0%
AGAATATATGCCTAAAGAGA+CGG - chr3_1:76139640-76139659 Msa0376110:CDS 30.0%
! ATTAGGATGAGTTTGGGATT+GGG + chr3_1:76137615-76137634 None:intergenic 35.0%
! AATTAGGATGAGTTTGGGAT+TGG + chr3_1:76137616-76137635 None:intergenic 35.0%
! AGTGTCTAAGCATGTTTCTA+TGG + chr3_1:76137691-76137710 None:intergenic 35.0%
CTTCTATATGGAATGGGAAT+CGG + chr3_1:76137740-76137759 None:intergenic 35.0%
TGCATAATACTTTGAACCCT+GGG + chr3_1:76137788-76137807 None:intergenic 35.0%
TTGCATAATACTTTGAACCC+TGG + chr3_1:76137789-76137808 None:intergenic 35.0%
!! AAGGTAGATTAAGGAGTGTT+TGG + chr3_1:76137827-76137846 None:intergenic 35.0%
ACTCCTTAATCTACCTTACA+TGG - chr3_1:76137830-76137849 Msa0376110:CDS 35.0%
!!! TGTTTTGGGAGACAGTTATT+GGG + chr3_1:76137912-76137931 None:intergenic 35.0%
!!! TTGTTTTGGGAGACAGTTAT+TGG + chr3_1:76137913-76137932 None:intergenic 35.0%
!! TGAGTGAGAGAAGTTGTTTT+GGG + chr3_1:76137926-76137945 None:intergenic 35.0%
! TTGAGTGAGAGAAGTTGTTT+TGG + chr3_1:76137927-76137946 None:intergenic 35.0%
TGATAGTAAACGGCATCAAA+AGG + chr3_1:76137963-76137982 None:intergenic 35.0%
ACTTGGAATATCTTACCTCT+AGG - chr3_1:76138012-76138031 Msa0376110:CDS 35.0%
! TTTTGCAACACCTTCACTTA+CGG - chr3_1:76138079-76138098 Msa0376110:intron 35.0%
TCAAAAAACGGTGATTGAAC+CGG + chr3_1:76138155-76138174 None:intergenic 35.0%
CTGAATTGAATGATGATCTC+CGG - chr3_1:76138189-76138208 Msa0376110:intron 35.0%
TATTATTACCTTGTCGTGGA+GGG + chr3_1:76138313-76138332 None:intergenic 35.0%
GTACTATTATTACCTTGTCG+TGG + chr3_1:76138317-76138336 None:intergenic 35.0%
GATAATTCACCTTGTATGCT+CGG + chr3_1:76138371-76138390 None:intergenic 35.0%
GAAATCTCGAACATAATCGA+AGG + chr3_1:76138565-76138584 None:intergenic 35.0%
TGAAGGGAGATTATTAGAGA+CGG - chr3_1:76138676-76138695 Msa0376110:intron 35.0%
! TTGTCAATTTTTCCTCTCCA+TGG - chr3_1:76139233-76139252 Msa0376110:CDS 35.0%
! TGTCAATTTTTCCTCTCCAT+GGG - chr3_1:76139234-76139253 Msa0376110:CDS 35.0%
GCTTCATTTCACTATTAAGC+TGG - chr3_1:76139414-76139433 Msa0376110:CDS 35.0%
ATACACTTACCAAAACCCAA+TGG - chr3_1:76139593-76139612 Msa0376110:CDS 35.0%
ATTGGACATGTCTTACCATT+GGG + chr3_1:76139611-76139630 None:intergenic 35.0%
TATTGGACATGTCTTACCAT+TGG + chr3_1:76139612-76139631 None:intergenic 35.0%
! ATAGTTTTCACCGTCTCTTT+AGG + chr3_1:76139653-76139672 None:intergenic 35.0%
TGAAAGCAATGTTCACATTC+AGG + chr3_1:76139677-76139696 None:intergenic 35.0%
! ATGCACAATGCATTGATGAA+TGG - chr3_1:76139696-76139715 Msa0376110:CDS 35.0%
GAGGAGAAGTTCTACAAATT+GGG + chr3_1:76139742-76139761 None:intergenic 35.0%
AGAGGAGAAGTTCTACAAAT+TGG + chr3_1:76139743-76139762 None:intergenic 35.0%
TTTGTAGAACTTCTCCTCTA+AGG - chr3_1:76139744-76139763 Msa0376110:CDS 35.0%
! ATTAGGATGAGTTTGGGATT+GGG + chr3_1:76137615-76137634 None:intergenic 35.0%
! AATTAGGATGAGTTTGGGAT+TGG + chr3_1:76137616-76137635 None:intergenic 35.0%
! AGTGTCTAAGCATGTTTCTA+TGG + chr3_1:76137691-76137710 None:intergenic 35.0%
CTTCTATATGGAATGGGAAT+CGG + chr3_1:76137740-76137759 None:intergenic 35.0%
TGCATAATACTTTGAACCCT+GGG + chr3_1:76137788-76137807 None:intergenic 35.0%
TTGCATAATACTTTGAACCC+TGG + chr3_1:76137789-76137808 None:intergenic 35.0%
!! AAGGTAGATTAAGGAGTGTT+TGG + chr3_1:76137827-76137846 None:intergenic 35.0%
ACTCCTTAATCTACCTTACA+TGG - chr3_1:76137830-76137849 Msa0376110:CDS 35.0%
!!! TGTTTTGGGAGACAGTTATT+GGG + chr3_1:76137912-76137931 None:intergenic 35.0%
!!! TTGTTTTGGGAGACAGTTAT+TGG + chr3_1:76137913-76137932 None:intergenic 35.0%
!! TGAGTGAGAGAAGTTGTTTT+GGG + chr3_1:76137926-76137945 None:intergenic 35.0%
! TTGAGTGAGAGAAGTTGTTT+TGG + chr3_1:76137927-76137946 None:intergenic 35.0%
TGATAGTAAACGGCATCAAA+AGG + chr3_1:76137963-76137982 None:intergenic 35.0%
ACTTGGAATATCTTACCTCT+AGG - chr3_1:76138012-76138031 Msa0376110:CDS 35.0%
! TTTTGCAACACCTTCACTTA+CGG - chr3_1:76138079-76138098 Msa0376110:intron 35.0%
TCAAAAAACGGTGATTGAAC+CGG + chr3_1:76138155-76138174 None:intergenic 35.0%
CTGAATTGAATGATGATCTC+CGG - chr3_1:76138189-76138208 Msa0376110:intron 35.0%
TATTATTACCTTGTCGTGGA+GGG + chr3_1:76138313-76138332 None:intergenic 35.0%
GTACTATTATTACCTTGTCG+TGG + chr3_1:76138317-76138336 None:intergenic 35.0%
GATAATTCACCTTGTATGCT+CGG + chr3_1:76138371-76138390 None:intergenic 35.0%
GAAATCTCGAACATAATCGA+AGG + chr3_1:76138565-76138584 None:intergenic 35.0%
TGAAGGGAGATTATTAGAGA+CGG - chr3_1:76138676-76138695 Msa0376110:intron 35.0%
! TTGTCAATTTTTCCTCTCCA+TGG - chr3_1:76139233-76139252 Msa0376110:CDS 35.0%
! TGTCAATTTTTCCTCTCCAT+GGG - chr3_1:76139234-76139253 Msa0376110:CDS 35.0%
GCTTCATTTCACTATTAAGC+TGG - chr3_1:76139414-76139433 Msa0376110:CDS 35.0%
ATACACTTACCAAAACCCAA+TGG - chr3_1:76139593-76139612 Msa0376110:CDS 35.0%
ATTGGACATGTCTTACCATT+GGG + chr3_1:76139611-76139630 None:intergenic 35.0%
TATTGGACATGTCTTACCAT+TGG + chr3_1:76139612-76139631 None:intergenic 35.0%
! ATAGTTTTCACCGTCTCTTT+AGG + chr3_1:76139653-76139672 None:intergenic 35.0%
TGAAAGCAATGTTCACATTC+AGG + chr3_1:76139677-76139696 None:intergenic 35.0%
! ATGCACAATGCATTGATGAA+TGG - chr3_1:76139696-76139715 Msa0376110:CDS 35.0%
GAGGAGAAGTTCTACAAATT+GGG + chr3_1:76139742-76139761 None:intergenic 35.0%
AGAGGAGAAGTTCTACAAAT+TGG + chr3_1:76139743-76139762 None:intergenic 35.0%
TTTGTAGAACTTCTCCTCTA+AGG - chr3_1:76139744-76139763 Msa0376110:CDS 35.0%
!! GATTTGGGTTGAAGAGGAAA+AGG + chr3_1:76137644-76137663 None:intergenic 40.0%
!! GTGTTTGATTTGGGTTGAAG+AGG + chr3_1:76137650-76137669 None:intergenic 40.0%
! CCACTGCTTGTGTTTGATTT+GGG + chr3_1:76137659-76137678 None:intergenic 40.0%
CGATTCCCATTCCATATAGA+AGG - chr3_1:76137738-76137757 Msa0376110:CDS 40.0%
ACAAATACATGTGGATACCC+AGG - chr3_1:76137768-76137787 Msa0376110:CDS 40.0%
CAAATACATGTGGATACCCA+GGG - chr3_1:76137769-76137788 Msa0376110:CDS 40.0%
!! AGCTATTGGTTTGTACCTAG+AGG + chr3_1:76138030-76138049 None:intergenic 40.0%
CTTGTCGTCTGTTTGTGATT+TGG - chr3_1:76138112-76138131 Msa0376110:intron 40.0%
CTATTATTACCTTGTCGTGG+AGG + chr3_1:76138314-76138333 None:intergenic 40.0%
ATGAATATGCCGAGCATACA+AGG - chr3_1:76138359-76138378 Msa0376110:intron 40.0%
GGGTGCATGGTTGAATAAAA+AGG + chr3_1:76138519-76138538 None:intergenic 40.0%
! AAGAATTGGTCTGCGATTCA+CGG + chr3_1:76138947-76138966 None:intergenic 40.0%
TAAATTCTCAACCCATGGAG+AGG + chr3_1:76139248-76139267 None:intergenic 40.0%
CCATCTAAATTCTCAACCCA+TGG + chr3_1:76139253-76139272 None:intergenic 40.0%
! CCATGGGTTGAGAATTTAGA+TGG - chr3_1:76139250-76139269 Msa0376110:CDS 40.0%
! TGGGTTGAGAATTTAGATGG+TGG - chr3_1:76139253-76139272 Msa0376110:CDS 40.0%
GAAATGAAGCACAACAAAGC+TGG + chr3_1:76139404-76139423 None:intergenic 40.0%
AAGTTCAGAATTGGTACCCA+TGG - chr3_1:76139446-76139465 Msa0376110:CDS 40.0%
CATGAATACACCAACACTTC+AGG - chr3_1:76139518-76139537 Msa0376110:CDS 40.0%
CTTATCAAGACCTGAAGTGT+TGG + chr3_1:76139531-76139550 None:intergenic 40.0%
! CATGTCTTACCATTGGGTTT+TGG + chr3_1:76139605-76139624 None:intergenic 40.0%
GATTGTGATGGTAACCTTAG+AGG + chr3_1:76139761-76139780 None:intergenic 40.0%
!! GATTTGGGTTGAAGAGGAAA+AGG + chr3_1:76137644-76137663 None:intergenic 40.0%
!! GTGTTTGATTTGGGTTGAAG+AGG + chr3_1:76137650-76137669 None:intergenic 40.0%
! CCACTGCTTGTGTTTGATTT+GGG + chr3_1:76137659-76137678 None:intergenic 40.0%
CGATTCCCATTCCATATAGA+AGG - chr3_1:76137738-76137757 Msa0376110:CDS 40.0%
ACAAATACATGTGGATACCC+AGG - chr3_1:76137768-76137787 Msa0376110:CDS 40.0%
CAAATACATGTGGATACCCA+GGG - chr3_1:76137769-76137788 Msa0376110:CDS 40.0%
!! AGCTATTGGTTTGTACCTAG+AGG + chr3_1:76138030-76138049 None:intergenic 40.0%
CTTGTCGTCTGTTTGTGATT+TGG - chr3_1:76138112-76138131 Msa0376110:intron 40.0%
CTATTATTACCTTGTCGTGG+AGG + chr3_1:76138314-76138333 None:intergenic 40.0%
ATGAATATGCCGAGCATACA+AGG - chr3_1:76138359-76138378 Msa0376110:intron 40.0%
GGGTGCATGGTTGAATAAAA+AGG + chr3_1:76138519-76138538 None:intergenic 40.0%
! AAGAATTGGTCTGCGATTCA+CGG + chr3_1:76138947-76138966 None:intergenic 40.0%
TAAATTCTCAACCCATGGAG+AGG + chr3_1:76139248-76139267 None:intergenic 40.0%
CCATCTAAATTCTCAACCCA+TGG + chr3_1:76139253-76139272 None:intergenic 40.0%
! CCATGGGTTGAGAATTTAGA+TGG - chr3_1:76139250-76139269 Msa0376110:CDS 40.0%
! TGGGTTGAGAATTTAGATGG+TGG - chr3_1:76139253-76139272 Msa0376110:CDS 40.0%
GAAATGAAGCACAACAAAGC+TGG + chr3_1:76139404-76139423 None:intergenic 40.0%
AAGTTCAGAATTGGTACCCA+TGG - chr3_1:76139446-76139465 Msa0376110:CDS 40.0%
CATGAATACACCAACACTTC+AGG - chr3_1:76139518-76139537 Msa0376110:CDS 40.0%
CTTATCAAGACCTGAAGTGT+TGG + chr3_1:76139531-76139550 None:intergenic 40.0%
! CATGTCTTACCATTGGGTTT+TGG + chr3_1:76139605-76139624 None:intergenic 40.0%
GATTGTGATGGTAACCTTAG+AGG + chr3_1:76139761-76139780 None:intergenic 40.0%
CCCAAATCAAACACAAGCAG+TGG - chr3_1:76137656-76137675 Msa0376110:CDS 45.0%
GCCACTGCTTGTGTTTGATT+TGG + chr3_1:76137660-76137679 None:intergenic 45.0%
! GGATTAGTGGTTCATTCGTG+TGG + chr3_1:76137719-76137738 None:intergenic 45.0%
! TGGAATGGGAATCGGATTAG+TGG + chr3_1:76137732-76137751 None:intergenic 45.0%
CATCAAAAGGAGAGCTAGAG+AGG + chr3_1:76137950-76137969 None:intergenic 45.0%
TGCACAAACACCGTAAGTGA+AGG + chr3_1:76138092-76138111 None:intergenic 45.0%
TGATTGAACCGGCACGTTAA+CGG + chr3_1:76138144-76138163 None:intergenic 45.0%
ATGATGATCTCCGGTTGTCA+TGG - chr3_1:76138198-76138217 Msa0376110:intron 45.0%
ATGGCGAATTCCATGACAAC+CGG + chr3_1:76138211-76138230 None:intergenic 45.0%
CTCGAACATAATCGAAGGCA+AGG + chr3_1:76138560-76138579 None:intergenic 45.0%
!! TCTGCGATTCACGGTTTTAG+TGG + chr3_1:76138938-76138957 None:intergenic 45.0%
TCAGAATTGGTACCCATGGT+TGG - chr3_1:76139450-76139469 Msa0376110:CDS 45.0%
AGGTTACCATCACAATCGAG+AGG - chr3_1:76139764-76139783 Msa0376110:CDS 45.0%
TTACCATCACAATCGAGAGG+TGG - chr3_1:76139767-76139786 Msa0376110:CDS 45.0%
TTACCACCTCTCGATTGTGA+TGG + chr3_1:76139773-76139792 None:intergenic 45.0%
CCCAAATCAAACACAAGCAG+TGG - chr3_1:76137656-76137675 Msa0376110:CDS 45.0%
GCCACTGCTTGTGTTTGATT+TGG + chr3_1:76137660-76137679 None:intergenic 45.0%
! GGATTAGTGGTTCATTCGTG+TGG + chr3_1:76137719-76137738 None:intergenic 45.0%
! TGGAATGGGAATCGGATTAG+TGG + chr3_1:76137732-76137751 None:intergenic 45.0%
CATCAAAAGGAGAGCTAGAG+AGG + chr3_1:76137950-76137969 None:intergenic 45.0%
TGCACAAACACCGTAAGTGA+AGG + chr3_1:76138092-76138111 None:intergenic 45.0%
TGATTGAACCGGCACGTTAA+CGG + chr3_1:76138144-76138163 None:intergenic 45.0%
ATGATGATCTCCGGTTGTCA+TGG - chr3_1:76138198-76138217 Msa0376110:intron 45.0%
ATGGCGAATTCCATGACAAC+CGG + chr3_1:76138211-76138230 None:intergenic 45.0%
CTCGAACATAATCGAAGGCA+AGG + chr3_1:76138560-76138579 None:intergenic 45.0%
!! TCTGCGATTCACGGTTTTAG+TGG + chr3_1:76138938-76138957 None:intergenic 45.0%
TCAGAATTGGTACCCATGGT+TGG - chr3_1:76139450-76139469 Msa0376110:CDS 45.0%
AGGTTACCATCACAATCGAG+AGG - chr3_1:76139764-76139783 Msa0376110:CDS 45.0%
TTACCATCACAATCGAGAGG+TGG - chr3_1:76139767-76139786 Msa0376110:CDS 45.0%
TTACCACCTCTCGATTGTGA+TGG + chr3_1:76139773-76139792 None:intergenic 45.0%
! GGTTGATACCGTTAACGTGC+CGG - chr3_1:76138133-76138152 Msa0376110:intron 50.0%
TCATGGAATTCGCCATCGTG+TGG - chr3_1:76138215-76138234 Msa0376110:intron 50.0%
! TGTGGAAGGTGTGAGTCTCA+TGG - chr3_1:76138233-76138252 Msa0376110:intron 50.0%
TACAATGTCCCTCCACGACA+AGG - chr3_1:76138302-76138321 Msa0376110:intron 50.0%
ACATTGACAGGGATTTCCCG+TGG - chr3_1:76139344-76139363 Msa0376110:CDS 50.0%
! TATGGCGTAACTTGCACCAC+GGG + chr3_1:76139363-76139382 None:intergenic 50.0%
! CTATGGCGTAACTTGCACCA+CGG + chr3_1:76139364-76139383 None:intergenic 50.0%
TACGCCATAGCCATATGTGC+AGG - chr3_1:76139374-76139393 Msa0376110:CDS 50.0%
ACGCCATAGCCATATGTGCA+GGG - chr3_1:76139375-76139394 Msa0376110:CDS 50.0%
TTGGTACCCATGGTTGGACT+TGG - chr3_1:76139456-76139475 Msa0376110:CDS 50.0%
TGGTACCCATGGTTGGACTT+GGG - chr3_1:76139457-76139476 Msa0376110:CDS 50.0%
! ATTGGGCACGAAGCATTCAG+TGG + chr3_1:76139725-76139744 None:intergenic 50.0%
! GGTTGATACCGTTAACGTGC+CGG - chr3_1:76138133-76138152 Msa0376110:intron 50.0%
TCATGGAATTCGCCATCGTG+TGG - chr3_1:76138215-76138234 Msa0376110:intron 50.0%
! TGTGGAAGGTGTGAGTCTCA+TGG - chr3_1:76138233-76138252 Msa0376110:intron 50.0%
TACAATGTCCCTCCACGACA+AGG - chr3_1:76138302-76138321 Msa0376110:intron 50.0%
ACATTGACAGGGATTTCCCG+TGG - chr3_1:76139344-76139363 Msa0376110:CDS 50.0%
! TATGGCGTAACTTGCACCAC+GGG + chr3_1:76139363-76139382 None:intergenic 50.0%
! CTATGGCGTAACTTGCACCA+CGG + chr3_1:76139364-76139383 None:intergenic 50.0%
TACGCCATAGCCATATGTGC+AGG - chr3_1:76139374-76139393 Msa0376110:CDS 50.0%
ACGCCATAGCCATATGTGCA+GGG - chr3_1:76139375-76139394 Msa0376110:CDS 50.0%
TTGGTACCCATGGTTGGACT+TGG - chr3_1:76139456-76139475 Msa0376110:CDS 50.0%
TGGTACCCATGGTTGGACTT+GGG - chr3_1:76139457-76139476 Msa0376110:CDS 50.0%
! ATTGGGCACGAAGCATTCAG+TGG + chr3_1:76139725-76139744 None:intergenic 50.0%
GGAATTCGCCATCGTGTGGA+AGG - chr3_1:76138219-76138238 Msa0376110:intron 55.0%
GACTCACACCTTCCACACGA+TGG + chr3_1:76138230-76138249 None:intergenic 55.0%
! GGAAGGTGTGAGTCTCATGG+TGG - chr3_1:76138236-76138255 Msa0376110:intron 55.0%
!! GAGTCTCATGGTGGACGTTG+TGG - chr3_1:76138245-76138264 Msa0376110:intron 55.0%
CGCCATAGCCATATGTGCAG+GGG - chr3_1:76139376-76139395 Msa0376110:CDS 55.0%
CACCCCTGCACATATGGCTA+TGG + chr3_1:76139381-76139400 None:intergenic 55.0%
ACGTGCCCAAGTCCAACCAT+GGG + chr3_1:76139465-76139484 None:intergenic 55.0%
GGAATTCGCCATCGTGTGGA+AGG - chr3_1:76138219-76138238 Msa0376110:intron 55.0%
GACTCACACCTTCCACACGA+TGG + chr3_1:76138230-76138249 None:intergenic 55.0%
! GGAAGGTGTGAGTCTCATGG+TGG - chr3_1:76138236-76138255 Msa0376110:intron 55.0%
!! GAGTCTCATGGTGGACGTTG+TGG - chr3_1:76138245-76138264 Msa0376110:intron 55.0%
CGCCATAGCCATATGTGCAG+GGG - chr3_1:76139376-76139395 Msa0376110:CDS 55.0%
CACCCCTGCACATATGGCTA+TGG + chr3_1:76139381-76139400 None:intergenic 55.0%
ACGTGCCCAAGTCCAACCAT+GGG + chr3_1:76139465-76139484 None:intergenic 55.0%
AGCTGGCACCCCTGCACATA+TGG + chr3_1:76139387-76139406 None:intergenic 60.0%
CACGTGCCCAAGTCCAACCA+TGG + chr3_1:76139466-76139485 None:intergenic 60.0%
AGCTGGCACCCCTGCACATA+TGG + chr3_1:76139387-76139406 None:intergenic 60.0%
CACGTGCCCAAGTCCAACCA+TGG + chr3_1:76139466-76139485 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76137603 76139808 76137603 ID=Msa0376110;Name=Msa0376110
chr3_1 mRNA 76137603 76139808 76137603 ID=Msa0376110-mRNA-1;Parent=Msa0376110;Name=Msa0376110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|391
chr3_1 exon 76139088 76139808 76139088 ID=Msa0376110-mRNA-1:exon:17964;Parent=Msa0376110-mRNA-1
chr3_1 exon 76137603 76138057 76137603 ID=Msa0376110-mRNA-1:exon:17963;Parent=Msa0376110-mRNA-1
chr3_1 CDS 76139088 76139808 76139088 ID=Msa0376110-mRNA-1:cds;Parent=Msa0376110-mRNA-1
chr3_1 CDS 76137603 76138057 76137603 ID=Msa0376110-mRNA-1:cds;Parent=Msa0376110-mRNA-1
Gene Sequence

>Msa0376110

ATGAAGACTCCCAATCCCAAACTCATCCTAATTTGTTTCCTTTTCCTCTTCAACCCAAATCAAACACAAGCAGTGGCACTAGCAACCATAGAAACATGCTTAGACACTGTTTGCCACACGAATGAACCACTAATCCGATTCCCATTCCATATAGAAGGAAAACATACAAATACATGTGGATACCCAGGGTTCAAAGTATTATGCAATGAAAGTGAAAAAAGCCAAACACTCCTTAATCTACCTTACATGGAAAATCTTAGTATCCAAAAAATAAACTATGCCAAACAAGAACTTTTTGTGAACGATCCCAATAACTGTCTCCCAAAACAACTTCTCTCACTCAACCTCTCTAGCTCTCCTTTTGATGCCGTTTACTATCAACAATTTACCTTTTTTAACTGCTCATACAACTTGGAATATCTTACCTCTAGGTACAAACCAATAGCTTGTCTTAGTGATTATTCCAAGTACAACATTTTTGCAACACCTTCACTTACGGTGTTTGTGCACTTGTCGTCTGTTTGTGATTTGGTTGATACCGTTAACGTGCCGGTTCAATCACCGTTTTTTGATCAAGTGTTGTCGTCTGAATTGAATGATGATCTCCGGTTGTCATGGAATTCGCCATCGTGTGGAAGGTGTGAGTCTCATGGTGGACGTTGTGGCTTCAAAAATAACTCTACTTTTGAAATTGCTTGCTACAATGTCCCTCCACGACAAGGGATTTCCCGTGGTGCAAGTTACGCCATAGCCATATGTGCAGGGGTGCCAGCTTTGTTGTGCTTCATTTCACTATTAAGCTGGATATGTAGCAAGTTCAGAATTGGTACCCATGGTTGGACTTGGGCACGTGAGACAATTGCAGATTTTGAGTCTCTTCTTGATCATGAATACACCAACACTTCAGGTCTTGATAAGCCAACAATTGAATCATACCCAAAAATAGTGATAGGTGATGACATACACTTACCAAAACCCAATGGTAAGACATGTCCAATATGCTTGTCAGAATATATGCCTAAAGAGACGGTGAAAACTATGCCTGAATGTGAACATTGCTTTCATGCACAATGCATTGATGAATGGCTTCCACTGAATGCTTCGTGCCCAATTTGTAGAACTTCTCCTCTAAGGTTACCATCACAATCGAGAGGTGGTAATGACCACAATACTTAA
Protein sequence

>Msa0376110

MKTPNPKLILICFLFLFNPNQTQAVALATIETCLDTVCHTNEPLIRFPFHIEGKHTNTCGYPGFKVLCNESEKSQTLLNLPYMENLSIQKINYAKQELFVNDPNNCLPKQLLSLNLSSSPFDAVYYQQFTFFNCSYNLEYLTSRYKPIACLSDYSKYNIFATPSLTVFVHLSSVCDLVDTVNVPVQSPFFDQVLSSELNDDLRLSWNSPSCGRCESHGGRCGFKNNSTFEIACYNVPPRQGISRGASYAIAICAGVPALLCFISLLSWICSKFRIGTHGWTWARETIADFESLLDHEYTNTSGLDKPTIESYPKIVIGDDIHLPKPNGKTCPICLSEYMPKETVKTMPECEHCFHAQCIDEWLPLNASCPICRTSPLRLPSQSRGGNDHNT*