Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469110 | XP_003601871.1 | 98.759 | 403 | 4 | 1 | 100 | 501 | 1 | 403 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469110 | sp|Q9FXD8|PLY5_ARATH | 82.171 | 387 | 68 | 1 | 116 | 501 | 22 | 408 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469110 | G7J2L5 | 98.759 | 403 | 4 | 1 | 100 | 501 | 1 | 403 | 0.0 | 832 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031120 | Msa0469110 | 0.811009 | 8.675805e-51 | -8.615850e-47 |
| Msa0134560 | Msa0469110 | 0.804458 | 2.139762e-49 | -8.615850e-47 |
| Msa0373810 | Msa0469110 | 0.943314 | 1.503120e-102 | -8.615850e-47 |
| Msa0422890 | Msa0469110 | 0.802986 | 4.323089e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469110 | MtrunA17_Chr3g0123321 | 98.759 | 403 | 4 | 1 | 100 | 501 | 1 | 403 | 0.0 | 832 |
| Msa0469110 | MtrunA17_Chr6g0458201 | 74.564 | 401 | 99 | 2 | 104 | 501 | 4 | 404 | 0.0 | 648 |
| Msa0469110 | MtrunA17_Chr4g0058051 | 79.634 | 383 | 74 | 3 | 123 | 501 | 25 | 407 | 0.0 | 629 |
| Msa0469110 | MtrunA17_Chr3g0116521 | 77.419 | 403 | 88 | 2 | 102 | 501 | 4 | 406 | 0.0 | 621 |
| Msa0469110 | MtrunA17_Chr7g0237761 | 69.430 | 386 | 115 | 2 | 119 | 501 | 59 | 444 | 0.0 | 569 |
| Msa0469110 | MtrunA17_Chr1g0169731 | 68.831 | 385 | 117 | 2 | 120 | 501 | 66 | 450 | 0.0 | 559 |
| Msa0469110 | MtrunA17_Chr3g0123331 | 68.159 | 402 | 123 | 4 | 105 | 501 | 5 | 406 | 0.0 | 558 |
| Msa0469110 | MtrunA17_Chr1g0210321 | 58.416 | 404 | 154 | 4 | 102 | 491 | 2 | 405 | 1.61e-171 | 493 |
| Msa0469110 | MtrunA17_Chr1g0180381 | 61.111 | 378 | 137 | 3 | 126 | 493 | 34 | 411 | 3.00e-171 | 491 |
| Msa0469110 | MtrunA17_Chr7g0264891 | 59.148 | 399 | 157 | 3 | 99 | 493 | 10 | 406 | 5.01e-167 | 480 |
| Msa0469110 | MtrunA17_Chr4g0060211 | 59.563 | 366 | 143 | 3 | 139 | 501 | 71 | 434 | 9.35e-158 | 455 |
| Msa0469110 | MtrunA17_Chr4g0075231 | 60.172 | 349 | 136 | 2 | 154 | 501 | 39 | 385 | 7.95e-154 | 443 |
| Msa0469110 | MtrunA17_Chr2g0288921 | 52.644 | 416 | 176 | 6 | 100 | 501 | 1 | 409 | 2.42e-153 | 443 |
| Msa0469110 | MtrunA17_Chr5g0416061 | 54.897 | 388 | 163 | 4 | 126 | 501 | 62 | 449 | 3.38e-150 | 436 |
| Msa0469110 | MtrunA17_Chr8g0362561 | 53.117 | 401 | 169 | 5 | 120 | 501 | 55 | 455 | 3.25e-146 | 426 |
| Msa0469110 | MtrunA17_Chr5g0416041 | 55.412 | 388 | 161 | 4 | 126 | 501 | 62 | 449 | 3.27e-146 | 426 |
| Msa0469110 | MtrunA17_Chr6g0452861 | 53.708 | 391 | 165 | 4 | 127 | 501 | 63 | 453 | 1.28e-144 | 422 |
| Msa0469110 | MtrunA17_Chr7g0216581 | 55.585 | 376 | 154 | 3 | 139 | 501 | 76 | 451 | 2.96e-140 | 411 |
| Msa0469110 | MtrunA17_Chr3g0089181 | 46.176 | 353 | 183 | 6 | 154 | 501 | 23 | 373 | 7.08e-99 | 302 |
| Msa0469110 | MtrunA17_Chr8g0373721 | 45.326 | 353 | 186 | 5 | 154 | 501 | 42 | 392 | 3.74e-98 | 301 |
| Msa0469110 | MtrunA17_Chr8g0373761 | 45.326 | 353 | 186 | 5 | 154 | 501 | 42 | 392 | 1.88e-97 | 300 |
| Msa0469110 | MtrunA17_Chr8g0373701 | 44.759 | 353 | 188 | 6 | 154 | 501 | 97 | 447 | 8.20e-93 | 289 |
| Msa0469110 | MtrunA17_Chr8g0373731 | 46.459 | 353 | 182 | 5 | 154 | 501 | 42 | 392 | 1.08e-92 | 287 |
| Msa0469110 | MtrunA17_Chr4g0031851 | 46.452 | 310 | 161 | 4 | 193 | 499 | 28 | 335 | 7.81e-87 | 271 |
| Msa0469110 | MtrunA17_Chr5g0403481 | 45.198 | 354 | 185 | 7 | 154 | 501 | 41 | 391 | 5.24e-86 | 270 |
| Msa0469110 | MtrunA17_Chr5g0403461 | 45.198 | 354 | 185 | 7 | 154 | 501 | 41 | 391 | 5.24e-86 | 270 |
| Msa0469110 | MtrunA17_Chr5g0403491 | 45.198 | 354 | 185 | 7 | 154 | 501 | 41 | 391 | 5.24e-86 | 270 |
| Msa0469110 | MtrunA17_Chr5g0403391 | 43.785 | 354 | 190 | 6 | 154 | 501 | 41 | 391 | 1.07e-85 | 269 |
| Msa0469110 | MtrunA17_Chr5g0414541 | 43.503 | 354 | 191 | 6 | 154 | 501 | 41 | 391 | 1.12e-84 | 266 |
| Msa0469110 | MtrunA17_Chr5g0403411 | 43.785 | 354 | 190 | 6 | 154 | 501 | 41 | 391 | 5.04e-83 | 262 |
| Msa0469110 | MtrunA17_Chr3g0113551 | 59.444 | 180 | 57 | 2 | 247 | 424 | 122 | 287 | 1.57e-68 | 222 |
| Msa0469110 | MtrunA17_Chr1g0183941 | 43.657 | 268 | 147 | 3 | 228 | 493 | 1 | 266 | 9.52e-67 | 216 |
| Msa0469110 | MtrunA17_Chr2g0288901 | 55.128 | 156 | 65 | 3 | 347 | 501 | 5 | 156 | 1.05e-51 | 172 |
| Msa0469110 | MtrunA17_Chr6g0481851 | 39.777 | 269 | 105 | 5 | 193 | 459 | 12 | 225 | 2.82e-51 | 175 |
| Msa0469110 | MtrunA17_Chr1g0212931 | 35.395 | 291 | 163 | 6 | 167 | 456 | 9 | 275 | 2.37e-42 | 153 |
| Msa0469110 | MtrunA17_Chr2g0288911 | 58.197 | 122 | 50 | 1 | 228 | 348 | 1 | 122 | 5.02e-42 | 146 |
| Msa0469110 | MtrunA17_Chr1g0182021 | 34.386 | 285 | 162 | 6 | 173 | 456 | 64 | 324 | 1.27e-34 | 133 |
| Msa0469110 | MtrunA17_Chr1g0183951 | 53.226 | 62 | 27 | 2 | 154 | 213 | 42 | 103 | 1.30e-14 | 70.1 |
| Msa0469110 | MtrunA17_Chr5g0416291 | 36.364 | 88 | 55 | 1 | 1 | 88 | 1 | 87 | 1.24e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469110 | AT1G67750.1 | 82.171 | 387 | 68 | 1 | 116 | 501 | 22 | 408 | 0.0 | 661 |
| Msa0469110 | AT5G63180.1 | 75.495 | 404 | 93 | 4 | 104 | 501 | 29 | 432 | 0.0 | 632 |
| Msa0469110 | AT4G24780.2 | 75.871 | 402 | 92 | 3 | 104 | 501 | 8 | 408 | 0.0 | 612 |
| Msa0469110 | AT4G24780.1 | 75.871 | 402 | 92 | 3 | 104 | 501 | 8 | 408 | 0.0 | 612 |
| Msa0469110 | AT4G13710.1 | 68.204 | 412 | 124 | 2 | 97 | 501 | 59 | 470 | 0.0 | 612 |
| Msa0469110 | AT4G13710.2 | 68.204 | 412 | 124 | 2 | 97 | 501 | 40 | 451 | 0.0 | 610 |
| Msa0469110 | AT3G27400.1 | 72.070 | 401 | 108 | 3 | 105 | 501 | 12 | 412 | 0.0 | 588 |
| Msa0469110 | AT3G27400.2 | 72.070 | 401 | 108 | 3 | 105 | 501 | 16 | 416 | 0.0 | 588 |
| Msa0469110 | AT3G24670.1 | 72.441 | 381 | 102 | 2 | 124 | 501 | 60 | 440 | 0.0 | 578 |
| Msa0469110 | AT3G07010.1 | 67.067 | 416 | 123 | 3 | 100 | 501 | 1 | 416 | 0.0 | 577 |
| Msa0469110 | AT3G07010.2 | 71.618 | 377 | 104 | 2 | 128 | 501 | 7 | 383 | 0.0 | 568 |
| Msa0469110 | AT4G13210.2 | 73.037 | 382 | 99 | 3 | 124 | 501 | 57 | 438 | 0.0 | 554 |
| Msa0469110 | AT3G24230.1 | 65.897 | 390 | 125 | 3 | 119 | 501 | 63 | 451 | 0.0 | 553 |
| Msa0469110 | AT4G13210.1 | 73.037 | 382 | 99 | 3 | 124 | 501 | 20 | 401 | 0.0 | 551 |
| Msa0469110 | AT1G04680.1 | 68.602 | 379 | 118 | 1 | 124 | 501 | 51 | 429 | 0.0 | 549 |
| Msa0469110 | AT5G48900.1 | 67.797 | 413 | 124 | 3 | 98 | 501 | 5 | 417 | 0.0 | 548 |
| Msa0469110 | AT3G53190.1 | 60.000 | 405 | 144 | 3 | 107 | 493 | 10 | 414 | 4.04e-172 | 494 |
| Msa0469110 | AT5G04310.3 | 61.417 | 381 | 131 | 3 | 127 | 491 | 53 | 433 | 1.12e-167 | 482 |
| Msa0469110 | AT5G04310.1 | 61.417 | 381 | 131 | 3 | 127 | 491 | 53 | 433 | 3.96e-166 | 480 |
| Msa0469110 | AT5G04310.2 | 61.417 | 381 | 131 | 3 | 127 | 491 | 53 | 433 | 3.96e-166 | 480 |
| Msa0469110 | AT5G55720.1 | 55.693 | 404 | 165 | 6 | 100 | 501 | 1 | 392 | 1.15e-159 | 459 |
| Msa0469110 | AT3G54920.1 | 59.530 | 383 | 128 | 6 | 127 | 491 | 37 | 410 | 1.34e-159 | 462 |
| Msa0469110 | AT4G22090.1 | 61.605 | 349 | 131 | 2 | 154 | 501 | 47 | 393 | 4.81e-159 | 457 |
| Msa0469110 | AT4G22080.1 | 60.458 | 349 | 135 | 2 | 154 | 501 | 47 | 393 | 3.84e-157 | 452 |
| Msa0469110 | AT1G11920.1 | 60.458 | 349 | 136 | 2 | 154 | 501 | 37 | 384 | 2.51e-156 | 450 |
| Msa0469110 | AT1G14420.1 | 51.795 | 390 | 170 | 3 | 130 | 501 | 70 | 459 | 1.40e-144 | 423 |
| Msa0469110 | AT3G01270.1 | 52.417 | 393 | 170 | 4 | 126 | 501 | 83 | 475 | 1.93e-144 | 423 |
| Msa0469110 | AT5G15110.1 | 56.338 | 355 | 152 | 3 | 150 | 501 | 118 | 472 | 6.57e-144 | 422 |
| Msa0469110 | AT2G02720.1 | 51.571 | 382 | 167 | 3 | 138 | 501 | 74 | 455 | 3.37e-141 | 414 |
| Msa0469110 | AT1G30350.1 | 55.747 | 348 | 139 | 2 | 154 | 501 | 36 | 368 | 1.70e-136 | 399 |
| Msa0469110 | AT5G09280.1 | 47.600 | 250 | 129 | 2 | 193 | 441 | 12 | 260 | 1.65e-76 | 243 |
| Msa0469110 | AT3G55140.1 | 36.842 | 285 | 155 | 6 | 173 | 456 | 16 | 276 | 2.91e-44 | 159 |
| Msa0469110 | AT3G09540.1 | 36.806 | 288 | 155 | 8 | 171 | 456 | 61 | 323 | 7.47e-41 | 151 |
| Msa0469110 | AT3G09540.3 | 36.458 | 288 | 152 | 9 | 171 | 456 | 61 | 319 | 7.94e-39 | 145 |
| Msa0469110 | AT3G55140.2 | 35.857 | 251 | 140 | 5 | 207 | 456 | 22 | 252 | 1.10e-36 | 138 |
| Msa0469110 | AT3G09540.2 | 35.510 | 245 | 133 | 6 | 171 | 414 | 61 | 281 | 1.86e-33 | 128 |
Find 107 sgRNAs with CRISPR-Local
Find 479 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGCCTTTAACCATTT+TGG | 0.133747 | 3_3:+70832226 | Msa0469110:CDS |
| TCATAATAAGGTTATGCTTT+TGG | 0.199264 | 3_3:+70832162 | Msa0469110:CDS |
| TCCTTCTCCAAAATGGTTAA+AGG | 0.280666 | 3_3:-70832233 | None:intergenic |
| AGTTACATTATTAGAAATAA+AGG | 0.281118 | 3_3:+70833177 | Msa0469110:three_prime_UTR |
| TATCTTAATGTTCCTGGCTT+TGG | 0.291147 | 3_3:-70831743 | None:intergenic |
| GCAGATTGTGCCATTGGATT+TGG | 0.295905 | 3_3:+70831650 | Msa0469110:CDS |
| GACAAAGTCAATGGAAGAAT+TGG | 0.310079 | 3_3:+70832953 | Msa0469110:CDS |
| GAACTAGTCCTTCTCCAAAA+TGG | 0.310199 | 3_3:-70832240 | None:intergenic |
| AATTCTTTCAAAACAATTGA+TGG | 0.329647 | 3_3:+70831845 | Msa0469110:CDS |
| AGAGATACACCTACACATTA+TGG | 0.331071 | 3_3:+70831986 | Msa0469110:CDS |
| GTGACAAATATTATCATTCA+TGG | 0.332234 | 3_3:+70831920 | Msa0469110:CDS |
| CATCTCCAACAATCATCAAT+AGG | 0.339900 | 3_3:-70831593 | None:intergenic |
| CTCTTTGAAGGTATTGTCAT+TGG | 0.341759 | 3_3:-70832488 | None:intergenic |
| GCATTCCTTTCTTGTGGAAA+TGG | 0.343685 | 3_3:+70831566 | Msa0469110:CDS |
| GCAATCATAGAATCATTCTT+TGG | 0.343858 | 3_3:-70824774 | None:intergenic |
| GGATTAATTGATGTTATTCA+TGG | 0.365168 | 3_3:+70832100 | Msa0469110:CDS |
| ACACCATATCTTAATGTTCC+TGG | 0.368640 | 3_3:-70831749 | None:intergenic |
| GTCAATGGAAGAATTGGAAT+TGG | 0.374618 | 3_3:+70832959 | Msa0469110:CDS |
| ACATCTTGGACTACTAATTC+AGG | 0.381751 | 3_3:-70831411 | None:intergenic |
| TTGCCTTGGCTGTTGATAGT+TGG | 0.389479 | 3_3:-70832451 | None:intergenic |
| TACGAAAAGCATCTCAGTTT+GGG | 0.395354 | 3_3:+70824631 | Msa0469110:CDS |
| CGTTTAGCAGATTGTGCCAT+TGG | 0.395538 | 3_3:+70831644 | Msa0469110:CDS |
| CTATGCAAGAGCATCTAGTT+TGG | 0.402131 | 3_3:+70833050 | Msa0469110:CDS |
| CTACGAAAAGCATCTCAGTT+TGG | 0.403235 | 3_3:+70824630 | Msa0469110:CDS |
| TGTTAAACGGTGCATTCTTT+AGG | 0.411696 | 3_3:+70833001 | Msa0469110:CDS |
| GGATTTGGCAAACATGCAAT+TGG | 0.415284 | 3_3:+70831665 | Msa0469110:CDS |
| AATGGTGATTTGATGTTAAA+CGG | 0.446949 | 3_3:+70832988 | Msa0469110:CDS |
| TGGATTAGCACTTCCTCCTA+TGG | 0.447091 | 3_3:-70832431 | None:intergenic |
| AATTGGAATTGGAGATCAAA+TGG | 0.448034 | 3_3:+70832970 | Msa0469110:CDS |
| TTCTTTAGGCCATCAGGAGC+AGG | 0.448718 | 3_3:+70833015 | Msa0469110:CDS |
| TGGAGTCTCGTACTTGGATC+AGG | 0.450699 | 3_3:+70824689 | Msa0469110:CDS |
| TCAGGAGTATTAATGATTCA+AGG | 0.451765 | 3_3:+70831534 | Msa0469110:intron |
| CATGGATCTAACCTCTTTGA+AGG | 0.458262 | 3_3:-70832500 | None:intergenic |
| AAGCCAGGAACATTAAGATA+TGG | 0.458441 | 3_3:+70831746 | Msa0469110:CDS |
| GGAACAAATGTGCACATTGC+TGG | 0.459904 | 3_3:+70831872 | Msa0469110:CDS |
| ATCTCCAACAATCATCAATA+GGG | 0.462172 | 3_3:-70831592 | None:intergenic |
| AACTTAGCATTCCTTTCTTG+TGG | 0.463747 | 3_3:+70831560 | Msa0469110:CDS |
| GCATCTCTCACTGCATCAGC+TGG | 0.464466 | 3_3:+70833096 | Msa0469110:CDS |
| GAAATGTTTATTTATATATG+TGG | 0.464684 | 3_3:+70833446 | Msa0469110:three_prime_UTR |
| GCGTACTGGAGTCTCGTACT+TGG | 0.465474 | 3_3:+70824683 | Msa0469110:CDS |
| AATATACATGATTGTAAAAG+AGG | 0.467014 | 3_3:+70831947 | Msa0469110:CDS |
| GGTGCATTCTTTAGGCCATC+AGG | 0.469799 | 3_3:+70833009 | Msa0469110:CDS |
| GATGTGGGCACGAAGCGTAC+TGG | 0.472075 | 3_3:+70824669 | Msa0469110:CDS |
| CTTAATAAACATGGTGTCAA+AGG | 0.474485 | 3_3:+70824816 | Msa0469110:CDS |
| GCAACCCTATTGATGATTGT+TGG | 0.477760 | 3_3:+70831588 | Msa0469110:CDS |
| TTCAAAACAATTGATGGTAG+AGG | 0.478443 | 3_3:+70831851 | Msa0469110:CDS |
| TCCAAAATGGTTAAAGGCAA+TGG | 0.482128 | 3_3:-70832227 | None:intergenic |
| TTGATTTGATCATGTGAAGA+TGG | 0.482359 | 3_3:+70833500 | Msa0469110:three_prime_UTR |
| GAGGGTAGCTCAAGAAGTTA+TGG | 0.482451 | 3_3:+70831311 | Msa0469110:intron |
| CGCATCATGGCCTCAGATGT+GGG | 0.483097 | 3_3:+70824654 | Msa0469110:CDS |
| AGGACCCTTTCTGATGGTGA+TGG | 0.484833 | 3_3:+70832013 | Msa0469110:CDS |
| GGATCACTAAACTGCAGAAA+AGG | 0.489523 | 3_3:+70833117 | Msa0469110:CDS |
| GGTTGCCATTTCCACAAGAA+AGG | 0.489648 | 3_3:-70831571 | None:intergenic |
| CACTCCATCACCATCAGAAA+GGG | 0.497141 | 3_3:-70832017 | None:intergenic |
| ACTAATTCAGGATCTTGAAG+TGG | 0.503284 | 3_3:-70831399 | None:intergenic |
| GCGCATCATGGCCTCAGATG+TGG | 0.503814 | 3_3:+70824653 | Msa0469110:CDS |
| TGACAAATATTATCATTCAT+GGG | 0.504150 | 3_3:+70831921 | Msa0469110:CDS |
| AGATGTGCGATAAGTATGAT+AGG | 0.504716 | 3_3:+70824751 | Msa0469110:CDS |
| ATATATGTAGTAACTGATCC+TGG | 0.505722 | 3_3:+70831704 | Msa0469110:CDS |
| AGAGATGCTACTAGAGATGA+TGG | 0.515686 | 3_3:-70833081 | None:intergenic |
| CATGCAATTGGAGGAAGAGA+TGG | 0.518008 | 3_3:+70831677 | Msa0469110:CDS |
| GGTGTCAAAGGCTTGGTGAT+AGG | 0.518260 | 3_3:+70824828 | Msa0469110:CDS |
| TGGTGGGAGTCATGTTTGGG+TGG | 0.525130 | 3_3:+70832048 | Msa0469110:CDS |
| TACATGATTGTAAAAGAGGT+GGG | 0.528458 | 3_3:+70831951 | Msa0469110:CDS |
| GTGACAAAGCGCGAGAATGC+AGG | 0.529681 | 3_3:+70832931 | Msa0469110:CDS |
| GACTTCTGAACATATGAAGA+TGG | 0.530655 | 3_3:-70824608 | None:intergenic |
| AAGCAAGAAATCTATTGCCT+TGG | 0.532682 | 3_3:-70832465 | None:intergenic |
| GATGATGAACCTGCTCCTGA+TGG | 0.532982 | 3_3:-70833024 | None:intergenic |
| TTTGGCAAACATGCAATTGG+AGG | 0.538003 | 3_3:+70831668 | Msa0469110:CDS |
| TAAACATGGTGTCAAAGGCT+TGG | 0.539368 | 3_3:+70824821 | Msa0469110:CDS |
| ATCTCAGTTTGGGCGCATCA+TGG | 0.542675 | 3_3:+70824641 | Msa0469110:CDS |
| CTTTCAAAACTAGATACAGT+TGG | 0.544337 | 3_3:-70833221 | None:intergenic |
| TACATTTGTAGATGTAGGCA+TGG | 0.544518 | 3_3:+70832361 | Msa0469110:intron |
| AGAATGCAGGACAAAGTCAA+TGG | 0.545320 | 3_3:+70832944 | Msa0469110:CDS |
| CTAATTCAGGATCTTGAAGT+GGG | 0.547682 | 3_3:-70831398 | None:intergenic |
| TCTCTTTCTAATTGCCGTGA+TGG | 0.550491 | 3_3:+70832079 | Msa0469110:CDS |
| CATGCTGTGAATCCAAAGCC+AGG | 0.563781 | 3_3:+70831731 | Msa0469110:CDS |
| GGATTCACAGCATGATCACC+AGG | 0.564978 | 3_3:-70831722 | None:intergenic |
| ACACTCCATCACCATCAGAA+AGG | 0.565577 | 3_3:-70832018 | None:intergenic |
| AAGTGGGGAAGATTGAATGA+AGG | 0.568259 | 3_3:-70831382 | None:intergenic |
| TGCATGTTTGCCAAATCCAA+TGG | 0.569350 | 3_3:-70831660 | None:intergenic |
| CAATGACAATACCTTCAAAG+AGG | 0.571653 | 3_3:+70832489 | Msa0469110:CDS |
| TGCTAAGTGGATTTCCACCT+CGG | 0.571779 | 3_3:+70824853 | Msa0469110:CDS |
| ATACATGATTGTAAAAGAGG+TGG | 0.572816 | 3_3:+70831950 | Msa0469110:CDS |
| ACGCTTCGTGCCCACATCTG+AGG | 0.573697 | 3_3:-70824664 | None:intergenic |
| GAGAGTAGCATGAATGAGAG+TGG | 0.592991 | 3_3:-70831339 | None:intergenic |
| TTCTCTGATTGACCATTCCG+AGG | 0.596086 | 3_3:-70824870 | None:intergenic |
| GTCCTAAAACCATAATGTGT+AGG | 0.596445 | 3_3:-70831995 | None:intergenic |
| GGGGAAGATTGAATGAAGGA+AGG | 0.598816 | 3_3:-70831378 | None:intergenic |
| TGGAGAATGTATGCCATAGG+AGG | 0.601184 | 3_3:+70832418 | Msa0469110:CDS |
| TAACATCAATTAATCCATCA+CGG | 0.606859 | 3_3:-70832093 | None:intergenic |
| CATTGGAGAATGTATGCCAT+AGG | 0.609580 | 3_3:+70832415 | Msa0469110:CDS |
| AGTGGATTTCCACCTCGGAA+TGG | 0.615207 | 3_3:+70824858 | Msa0469110:CDS |
| GACTAGTTCAAAGAATGCCA+AGG | 0.619554 | 3_3:+70832254 | Msa0469110:CDS |
| AATCCAACTATCAACAGCCA+AGG | 0.637022 | 3_3:+70832448 | Msa0469110:CDS |
| ACAAATTGTACAGTAATACA+AGG | 0.642555 | 3_3:-70831899 | None:intergenic |
| TGAACAATGACTACACACAT+TGG | 0.644794 | 3_3:+70832398 | Msa0469110:CDS |
| CGCTTGAAGATTATCCACAA+TGG | 0.648638 | 3_3:-70831785 | None:intergenic |
| ATGAAACTGCTTAATAAACA+TGG | 0.651395 | 3_3:+70824807 | Msa0469110:CDS |
| TCTGATTGACCATTCCGAGG+TGG | 0.652221 | 3_3:-70824867 | None:intergenic |
| ATTGTTGTAGACACAAGCCA+AGG | 0.653428 | 3_3:-70833310 | None:intergenic |
| ACAAATGTGCACATTGCTGG+TGG | 0.659246 | 3_3:+70831875 | Msa0469110:CDS |
| GATAATCTTCAAGCGTGACA+TGG | 0.674441 | 3_3:+70831793 | Msa0469110:CDS |
| TTATTCAAGAAGAACCATTG+TGG | 0.676481 | 3_3:+70831771 | Msa0469110:CDS |
| TAATTCAGGATCTTGAAGTG+GGG | 0.701001 | 3_3:-70831397 | None:intergenic |
| TTGGTGATAGGAATGCTAAG+TGG | 0.712805 | 3_3:+70824840 | Msa0469110:CDS |
| ATGATGATGTTGATAGACAC+AGG | 0.721482 | 3_3:+70833347 | Msa0469110:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAATATAAGAACT+AGG | - | chr3_3:70825259-70825278 | None:intergenic | 10.0% |
| !!! | AATATTGAATTAAAAAGTTT+TGG | - | chr3_3:70825427-70825446 | None:intergenic | 10.0% |
| !! | TATATATTATTGTTATATCA+TGG | - | chr3_3:70826042-70826061 | None:intergenic | 10.0% |
| !! | ATGATATAACAATAATATAT+AGG | + | chr3_3:70826041-70826060 | Msa0469110:intron | 10.0% |
| !! | ATGTAGAAAAAAAATATATT+TGG | - | chr3_3:70828102-70828121 | None:intergenic | 10.0% |
| !! | AAAATAGTTTATAAAAGAAA+AGG | + | chr3_3:70828790-70828809 | Msa0469110:intron | 10.0% |
| !! | AAATAGTTTATAAAAGAAAA+GGG | + | chr3_3:70828791-70828810 | Msa0469110:intron | 10.0% |
| !! | AAACAAAATAATCATAATTT+AGG | - | chr3_3:70829033-70829052 | None:intergenic | 10.0% |
| !! | TGAAGAAAAAAAAATTAATA+TGG | + | chr3_3:70829559-70829578 | Msa0469110:intron | 10.0% |
| !!! | TAAATTCTTTCTAATATTTT+AGG | - | chr3_3:70830259-70830278 | None:intergenic | 10.0% |
| !! | ATATTAGAAAGAATTTAAAA+TGG | + | chr3_3:70830262-70830281 | Msa0469110:intron | 10.0% |
| !!! | ATAGATGAATTATTTTTTTT+GGG | - | chr3_3:70830957-70830976 | None:intergenic | 10.0% |
| !!! | GATTATACTTTTTTTTTATT+AGG | + | chr3_3:70832302-70832321 | Msa0469110:intron | 10.0% |
| !!! | TTATACTTTTTTTTTATTAG+GGG | + | chr3_3:70832304-70832323 | Msa0469110:intron | 10.0% |
| !!! | AATATAAAAGCATAAAACAT+CGG | - | chr3_3:70825290-70825309 | None:intergenic | 15.0% |
| !! | TTCTATAGTTGATTAATTAA+TGG | - | chr3_3:70826353-70826372 | None:intergenic | 15.0% |
| !! | AATTAATCAACTATAGAATT+TGG | + | chr3_3:70826355-70826374 | Msa0469110:intron | 15.0% |
| !! | AAAGCATGAATTAAATAAAA+AGG | - | chr3_3:70826578-70826597 | None:intergenic | 15.0% |
| !! | AAAATTTATGGAATAATGAT+TGG | - | chr3_3:70826829-70826848 | None:intergenic | 15.0% |
| !! | CACAAAATATAATAGAATAT+GGG | - | chr3_3:70826862-70826881 | None:intergenic | 15.0% |
| !! | ACACAAAATATAATAGAATA+TGG | - | chr3_3:70826863-70826882 | None:intergenic | 15.0% |
| !! | CATTAAAATAAAAATATGCA+AGG | + | chr3_3:70827607-70827626 | Msa0469110:intron | 15.0% |
| !!! | TTTATTTATTTTTTATGTGG+TGG | - | chr3_3:70827652-70827671 | None:intergenic | 15.0% |
| !! | TAAATTAATATAACATGGTT+CGG | + | chr3_3:70827668-70827687 | Msa0469110:intron | 15.0% |
| !!! | ATATTAATTTTTTTTTGTGG+TGG | - | chr3_3:70827752-70827771 | None:intergenic | 15.0% |
| !! | AACCTTGTAAAAAATATATT+TGG | - | chr3_3:70827891-70827910 | None:intergenic | 15.0% |
| !!! | AATATATTTTTTACAAGGTT+CGG | + | chr3_3:70827891-70827910 | Msa0469110:intron | 15.0% |
| !!! | TATATTAATTTTTTTTGTGG+TGG | - | chr3_3:70827964-70827983 | None:intergenic | 15.0% |
| !!! | TAATTTGTAAAGTGAATAAT+AGG | - | chr3_3:70828817-70828836 | None:intergenic | 15.0% |
| !!! | AACTAATTTAATTTACACAT+GGG | - | chr3_3:70829531-70829550 | None:intergenic | 15.0% |
| !!! | AAACTAATTTAATTTACACA+TGG | - | chr3_3:70829532-70829551 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAGTTTATTTTTT+AGG | + | chr3_3:70830010-70830029 | Msa0469110:intron | 15.0% |
| !!! | AAAAATCAACTTTTGATTAT+AGG | + | chr3_3:70830097-70830116 | Msa0469110:intron | 15.0% |
| !! | ATTATAATATTAGTAACACA+TGG | + | chr3_3:70830730-70830749 | Msa0469110:intron | 15.0% |
| !!! | CATAGATGAATTATTTTTTT+TGG | - | chr3_3:70830958-70830977 | None:intergenic | 15.0% |
| !!! | ATCATTATTGATAAGTATTT+TGG | - | chr3_3:70831138-70831157 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTTAATTATTTC+AGG | + | chr3_3:70831516-70831535 | Msa0469110:intron | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+CGG | - | chr3_3:70832634-70832653 | None:intergenic | 15.0% |
| !!! | ATGTAACTTAATATACTTTT+AGG | - | chr3_3:70833165-70833184 | None:intergenic | 15.0% |
| !! | AGTTACATTATTAGAAATAA+AGG | + | chr3_3:70833177-70833196 | Msa0469110:three_prime_UTR | 15.0% |
| !! | AATGATAAAGAAAGAAAAAA+AGG | + | chr3_3:70833411-70833430 | Msa0469110:three_prime_UTR | 15.0% |
| !! | GAAATGTTTATTTATATATG+TGG | + | chr3_3:70833446-70833465 | Msa0469110:three_prime_UTR | 15.0% |
| !!! | GATTCTAGAAAATATATCAT+TGG | - | chr3_3:70825378-70825397 | None:intergenic | 20.0% |
| !!! | CTAATTCTTTCTTTTTGTTA+CGG | + | chr3_3:70825398-70825417 | Msa0469110:intron | 20.0% |
| !!! | TAATTCTTTCTTTTTGTTAC+GGG | + | chr3_3:70825399-70825418 | Msa0469110:intron | 20.0% |
| !! | ATTAGATAACTATACTTCTA+TGG | - | chr3_3:70825469-70825488 | None:intergenic | 20.0% |
| !!! | CAATTCTTCTTATTTGTAAT+GGG | - | chr3_3:70825794-70825813 | None:intergenic | 20.0% |
| !!! | TCAATTCTTCTTATTTGTAA+TGG | - | chr3_3:70825795-70825814 | None:intergenic | 20.0% |
| !! | ACAATAATATATAGGTTTCA+TGG | + | chr3_3:70826049-70826068 | Msa0469110:intron | 20.0% |
| !! | GTATTTGCCTAAATAATTAA+TGG | + | chr3_3:70826222-70826241 | Msa0469110:intron | 20.0% |
| !! | TTGTTAGCATATATGAAAAA+AGG | + | chr3_3:70826283-70826302 | Msa0469110:intron | 20.0% |
| !! | TGTTAGCATATATGAAAAAA+GGG | + | chr3_3:70826284-70826303 | Msa0469110:intron | 20.0% |
| !! | TGATTCAAATGATTATAATG+AGG | - | chr3_3:70826538-70826557 | None:intergenic | 20.0% |
| !!! | AAACCGATTTCATTTAATTA+GGG | - | chr3_3:70826729-70826748 | None:intergenic | 20.0% |
| !!! | AAAACCGATTTCATTTAATT+AGG | - | chr3_3:70826730-70826749 | None:intergenic | 20.0% |
| !!! | TGTTTTCACAAATAAAAGAT+GGG | - | chr3_3:70826925-70826944 | None:intergenic | 20.0% |
| !!! | ATGTTTTCACAAATAAAAGA+TGG | - | chr3_3:70826926-70826945 | None:intergenic | 20.0% |
| !! | GAGATAATATATTCTTAAAG+TGG | + | chr3_3:70826994-70827013 | Msa0469110:intron | 20.0% |
| !!! | AGTTTTATCAACGATAAAAA+TGG | + | chr3_3:70827318-70827337 | Msa0469110:intron | 20.0% |
| !!! | TAATTAGCTTAACTAATAAG+CGG | - | chr3_3:70827515-70827534 | None:intergenic | 20.0% |
| !! | AAATAAAAATATGCAAGGTT+CGG | + | chr3_3:70827612-70827631 | Msa0469110:intron | 20.0% |
| !! | AAATTAATATAACATGGTTC+GGG | + | chr3_3:70827669-70827688 | Msa0469110:intron | 20.0% |
| !! | TACAATACATAAATATCTTG+AGG | + | chr3_3:70827775-70827794 | Msa0469110:intron | 20.0% |
| !! | ACAATACATAAATATCTTGA+GGG | + | chr3_3:70827776-70827795 | Msa0469110:intron | 20.0% |
| !!! | CACCAAATATATTTTTTACA+AGG | + | chr3_3:70827886-70827905 | Msa0469110:intron | 20.0% |
| !!! | ATATATTTTTTACAAGGTTC+GGG | + | chr3_3:70827892-70827911 | Msa0469110:intron | 20.0% |
| !! | TACAATACATAAATATCTTG+AGG | + | chr3_3:70827775-70827794 | Msa0469110:intron | 20.0% |
| !! | ACAATACATAAATATCTTGA+GGG | + | chr3_3:70827776-70827795 | Msa0469110:intron | 20.0% |
| !!! | CATATACAAGTTTTTATGTT+AGG | - | chr3_3:70828196-70828215 | None:intergenic | 20.0% |
| !! | ATAAAAACTTGTATATGACA+TGG | + | chr3_3:70828199-70828218 | Msa0469110:intron | 20.0% |
| !! | CAAGTTATTCAAATTCATAT+TGG | + | chr3_3:70828392-70828411 | Msa0469110:intron | 20.0% |
| !!! | TCTATCTATTTTCAATTTCT+TGG | - | chr3_3:70828765-70828784 | None:intergenic | 20.0% |
| !! | GGTAATTATTGAAATATTGA+AGG | - | chr3_3:70828985-70829004 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAATCCTGTG+AGG | + | chr3_3:70829189-70829208 | Msa0469110:intron | 20.0% |
| !! | AAAAAAAAAAAATCCTGTGA+GGG | + | chr3_3:70829190-70829209 | Msa0469110:intron | 20.0% |
| !! | AAATATCAGCTATAATTCTT+AGG | - | chr3_3:70829591-70829610 | None:intergenic | 20.0% |
| !! | TGTGACAATCATATATAAAA+TGG | - | chr3_3:70830420-70830439 | None:intergenic | 20.0% |
| !! | TATTTAGTATTTACATCTTC+AGG | + | chr3_3:70830587-70830606 | Msa0469110:intron | 20.0% |
| !! | CAACTCATTATTATTACTAT+AGG | - | chr3_3:70830843-70830862 | None:intergenic | 20.0% |
| !! | TGAACTATATTTAATTGCTT+AGG | - | chr3_3:70831086-70831105 | None:intergenic | 20.0% |
| !! | AAGCAATTAAATATAGTTCA+TGG | + | chr3_3:70831086-70831105 | Msa0469110:intron | 20.0% |
| !! | AGCAATTAAATATAGTTCAT+GGG | + | chr3_3:70831087-70831106 | Msa0469110:intron | 20.0% |
| !!! | ATTGATAAGTATTTTGGTTA+TGG | - | chr3_3:70831132-70831151 | None:intergenic | 20.0% |
| !! | TTTGTTTATGAAGAAATGTA+AGG | - | chr3_3:70831261-70831280 | None:intergenic | 20.0% |
| !! | AATTCTTTCAAAACAATTGA+TGG | + | chr3_3:70831845-70831864 | Msa0469110:CDS | 20.0% |
| !! | TGACAAATATTATCATTCAT+GGG | + | chr3_3:70831921-70831940 | Msa0469110:CDS | 20.0% |
| !! | AATATACATGATTGTAAAAG+AGG | + | chr3_3:70831947-70831966 | Msa0469110:CDS | 20.0% |
| !!! | TTTTATGACTCATCATAATA+AGG | + | chr3_3:70832150-70832169 | Msa0469110:CDS | 20.0% |
| !!! | AAAATTGCACATTTTCAAAT+GGG | - | chr3_3:70832594-70832613 | None:intergenic | 20.0% |
| !!! | AGTTTTGAAAGAAAAAAAAG+TGG | + | chr3_3:70833233-70833252 | Msa0469110:three_prime_UTR | 20.0% |
| ! | ATGAAACTGCTTAATAAACA+TGG | + | chr3_3:70824807-70824826 | Msa0469110:CDS | 25.0% |
| ! | ATTATTTAGTGACATGACAT+AGG | - | chr3_3:70825048-70825067 | None:intergenic | 25.0% |
| ! | CGTAACAAAAAGAAAGAATT+AGG | - | chr3_3:70825400-70825419 | None:intergenic | 25.0% |
| ! | TCTAAAGATGATGTAAACTA+AGG | - | chr3_3:70825762-70825781 | None:intergenic | 25.0% |
| ! | GTTTCTATCTTAGTAATGAA+AGG | + | chr3_3:70825822-70825841 | Msa0469110:intron | 25.0% |
| !! | TAGCTAAAAGATTGATAGTT+TGG | - | chr3_3:70825890-70825909 | None:intergenic | 25.0% |
| !!! | ATGAGTCTTTTTAACTTTAG+AGG | + | chr3_3:70826103-70826122 | Msa0469110:intron | 25.0% |
| ! | TGCCTAAATAATTAATGGTA+TGG | + | chr3_3:70826227-70826246 | Msa0469110:intron | 25.0% |
| ! | AGCCATACCATTAATTATTT+AGG | - | chr3_3:70826232-70826251 | None:intergenic | 25.0% |
| ! | AATGAATTAACTATTGCTAG+AGG | - | chr3_3:70826327-70826346 | None:intergenic | 25.0% |
| ! | GATTGTTGCATTATTTGATT+TGG | - | chr3_3:70826451-70826470 | None:intergenic | 25.0% |
| !! | TGTGAAGATGTTTTATCATA+TGG | - | chr3_3:70826653-70826672 | None:intergenic | 25.0% |
| ! | TCTCCCTAATTAAATGAAAT+CGG | + | chr3_3:70826723-70826742 | Msa0469110:intron | 25.0% |
| ! | ATGGAATAATGATTGGTATA+CGG | - | chr3_3:70826822-70826841 | None:intergenic | 25.0% |
| !! | GGCTAGAGATTTAAAATTTA+TGG | - | chr3_3:70826841-70826860 | None:intergenic | 25.0% |
| ! | AATAAAAATATGCAAGGTTC+GGG | + | chr3_3:70827613-70827632 | Msa0469110:intron | 25.0% |
| ! | AATTAATATAACATGGTTCG+GGG | + | chr3_3:70827670-70827689 | Msa0469110:intron | 25.0% |
| !!! | TATATTTTTTACAAGGTTCG+GGG | + | chr3_3:70827893-70827912 | Msa0469110:intron | 25.0% |
| ! | AATTAATCCACCTTACAATT+TGG | + | chr3_3:70828240-70828259 | Msa0469110:intron | 25.0% |
| ! | TCATAACAAACCAAATTGTA+AGG | - | chr3_3:70828253-70828272 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTATGATAAGTT+AGG | + | chr3_3:70828259-70828278 | Msa0469110:intron | 25.0% |
| !!! | AGCTATGCAATTTTTTGATT+AGG | + | chr3_3:70828306-70828325 | Msa0469110:intron | 25.0% |
| !! | TGAATCAAGAGAATGTATTT+TGG | - | chr3_3:70828366-70828385 | None:intergenic | 25.0% |
| !!! | AGTTGATTTGTTTTGTAAAC+AGG | - | chr3_3:70828557-70828576 | None:intergenic | 25.0% |
| !!! | TTCTTTCACGTTTTATTGAA+CGG | - | chr3_3:70828627-70828646 | None:intergenic | 25.0% |
| ! | CTTCTAATTTCTATAGTCTA+TGG | + | chr3_3:70828881-70828900 | Msa0469110:intron | 25.0% |
| ! | AAATCAAATAACTATAGCGT+CGG | - | chr3_3:70828925-70828944 | None:intergenic | 25.0% |
| ! | TTCGAAAGTTAGAAAAGATA+AGG | - | chr3_3:70829006-70829025 | None:intergenic | 25.0% |
| ! | GTATGATATGTTGTGATTAA+TGG | - | chr3_3:70829056-70829075 | None:intergenic | 25.0% |
| ! | CTATGAATGCTAAACATTAA+TGG | - | chr3_3:70829246-70829265 | None:intergenic | 25.0% |
| ! | GCTGATATTTATTGTATTGA+AGG | + | chr3_3:70829601-70829620 | Msa0469110:intron | 25.0% |
| ! | TATGTGCAAAATGTTAAACA+TGG | - | chr3_3:70829664-70829683 | None:intergenic | 25.0% |
| ! | TCATCAAAGTTGTCTAATTT+GGG | - | chr3_3:70829716-70829735 | None:intergenic | 25.0% |
| ! | TTGTGATTGGACAAAAATAA+TGG | + | chr3_3:70829753-70829772 | Msa0469110:intron | 25.0% |
| ! | TTTAAAGAGTTGTCAAAAAG+TGG | + | chr3_3:70829834-70829853 | Msa0469110:intron | 25.0% |
| !!! | TTTTTCTTTGTTGACTAATG+TGG | - | chr3_3:70829882-70829901 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr3_3:70830035-70830054 | Msa0469110:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr3_3:70830035-70830054 | None:intergenic | 25.0% |
| ! | AAGAAATTTAGACAATTGCA+TGG | - | chr3_3:70830215-70830234 | None:intergenic | 25.0% |
| ! | ATTTCTTGCGTAAATATTTG+AGG | + | chr3_3:70830228-70830247 | Msa0469110:intron | 25.0% |
| !!! | ATCTATCTACATGACTTTTT+TGG | - | chr3_3:70830291-70830310 | None:intergenic | 25.0% |
| ! | GAAAATGATGTAACACTAAA+TGG | - | chr3_3:70830386-70830405 | None:intergenic | 25.0% |
| !! | TTTTATATAGTTACCACTCA+TGG | + | chr3_3:70830503-70830522 | Msa0469110:intron | 25.0% |
| ! | AATTCAACATTTGCAACAAA+AGG | - | chr3_3:70830652-70830671 | None:intergenic | 25.0% |
| !! | TAATGAGTTGAAATTCACTA+AGG | + | chr3_3:70830853-70830872 | Msa0469110:intron | 25.0% |
| ! | CTATATATAGGGAACAAAAT+AGG | - | chr3_3:70831228-70831247 | None:intergenic | 25.0% |
| ! | GACAGTTTATGCTATATATA+GGG | - | chr3_3:70831239-70831258 | None:intergenic | 25.0% |
| !!! | TTTCTTACTTTTGTACATCT+TGG | - | chr3_3:70831428-70831447 | None:intergenic | 25.0% |
| ! | TGAGATTAATAAATGTGGTA+TGG | - | chr3_3:70831497-70831516 | None:intergenic | 25.0% |
| ! | CCAAATGAGATTAATAAATG+TGG | - | chr3_3:70831502-70831521 | None:intergenic | 25.0% |
| ! | CCACATTTATTAATCTCATT+TGG | + | chr3_3:70831499-70831518 | Msa0469110:intron | 25.0% |
| ! | ACAAATTGTACAGTAATACA+AGG | - | chr3_3:70831902-70831921 | None:intergenic | 25.0% |
| ! | GTGACAAATATTATCATTCA+TGG | + | chr3_3:70831920-70831939 | Msa0469110:CDS | 25.0% |
| ! | TAACATCAATTAATCCATCA+CGG | - | chr3_3:70832096-70832115 | None:intergenic | 25.0% |
| ! | GGATTAATTGATGTTATTCA+TGG | + | chr3_3:70832100-70832119 | Msa0469110:CDS | 25.0% |
| !! | TCATAATAAGGTTATGCTTT+TGG | + | chr3_3:70832162-70832181 | Msa0469110:CDS | 25.0% |
| !! | CATAATAAGGTTATGCTTTT+GGG | + | chr3_3:70832163-70832182 | Msa0469110:CDS | 25.0% |
| ! | TTTGTTACATTTGTAGATGT+AGG | + | chr3_3:70832356-70832375 | Msa0469110:intron | 25.0% |
| ! | AAAAATCATATGTTCGTTCA+TGG | - | chr3_3:70832521-70832540 | None:intergenic | 25.0% |
| !! | CAAAATTGCACATTTTCAAA+TGG | - | chr3_3:70832595-70832614 | None:intergenic | 25.0% |
| ! | CAATTTAGTAGGATTGAATT+AGG | - | chr3_3:70832852-70832871 | None:intergenic | 25.0% |
| ! | CTAATTCAATCCTACTAAAT+TGG | + | chr3_3:70832850-70832869 | Msa0469110:intron | 25.0% |
| ! | AAGTTATAAGCCAATTTAGT+AGG | - | chr3_3:70832863-70832882 | None:intergenic | 25.0% |
| !! | TTTTACAACTGTCTAATTTC+AGG | + | chr3_3:70832909-70832928 | Msa0469110:intron | 25.0% |
| ! | AATGGTGATTTGATGTTAAA+CGG | + | chr3_3:70832988-70833007 | Msa0469110:CDS | 25.0% |
| GCAATCATAGAATCATTCTT+TGG | - | chr3_3:70824777-70824796 | None:intergenic | 30.0% | |
| ! | CTTAATAAACATGGTGTCAA+AGG | + | chr3_3:70824816-70824835 | Msa0469110:CDS | 30.0% |
| ! | AGTATGTTGTTTGGATGAAT+CGG | - | chr3_3:70825076-70825095 | None:intergenic | 30.0% |
| AAGCAGTAAAGTATGTTGTT+TGG | - | chr3_3:70825085-70825104 | None:intergenic | 30.0% | |
| CGTATGACTTAACACAAAAA+TGG | + | chr3_3:70825205-70825224 | Msa0469110:intron | 30.0% | |
| ATGACTTAACACAAAAATGG+TGG | + | chr3_3:70825208-70825227 | Msa0469110:intron | 30.0% | |
| !!! | AGTTTTTAGTCTCCAGTTTA+TGG | + | chr3_3:70825345-70825364 | Msa0469110:intron | 30.0% |
| ATTGGATTTCTTCCATAAAC+TGG | - | chr3_3:70825360-70825379 | None:intergenic | 30.0% | |
| AATTGATAGACTGAAATGTG+AGG | + | chr3_3:70825582-70825601 | Msa0469110:intron | 30.0% | |
| ATTGATAGACTGAAATGTGA+GGG | + | chr3_3:70825583-70825602 | Msa0469110:intron | 30.0% | |
| ATCTAGACTACTTTAATGCT+TGG | - | chr3_3:70825643-70825662 | None:intergenic | 30.0% | |
| AATACTCAACAAAGTCTATG+TGG | + | chr3_3:70825930-70825949 | Msa0469110:intron | 30.0% | |
| ATACTCAACAAAGTCTATGT+GGG | + | chr3_3:70825931-70825950 | Msa0469110:intron | 30.0% | |
| CATTCGTTAATCTAACTCTA+AGG | - | chr3_3:70826203-70826222 | None:intergenic | 30.0% | |
| ! | TATAGAATTTGGTAGCATCA+TGG | + | chr3_3:70826366-70826385 | Msa0469110:intron | 30.0% |
| ! | ATAGAATTTGGTAGCATCAT+GGG | + | chr3_3:70826367-70826386 | Msa0469110:intron | 30.0% |
| !! | CATTTTGACAAAACTCATTG+TGG | + | chr3_3:70826478-70826497 | Msa0469110:intron | 30.0% |
| TATCTCAAGTCTTTGTACAA+AGG | - | chr3_3:70826703-70826722 | None:intergenic | 30.0% | |
| ATATCACTCTTCCTAAGTAA+CGG | - | chr3_3:70826753-70826772 | None:intergenic | 30.0% | |
| GAAAAAAGATGATCAAACGT+TGG | - | chr3_3:70827100-70827119 | None:intergenic | 30.0% | |
| GTCTATTTGTCAAACATTAG+TGG | + | chr3_3:70827207-70827226 | Msa0469110:intron | 30.0% | |
| TGTCAAACATTAGTGGAAAT+AGG | + | chr3_3:70827214-70827233 | Msa0469110:intron | 30.0% | |
| TGAGTTTAACTATGACTCAA+GGG | - | chr3_3:70827479-70827498 | None:intergenic | 30.0% | |
| TTGAGTTTAACTATGACTCA+AGG | - | chr3_3:70827480-70827499 | None:intergenic | 30.0% | |
| ATAAAAATATGCAAGGTTCG+GGG | + | chr3_3:70827614-70827633 | Msa0469110:intron | 30.0% | |
| !!! | TTTATTTTTTATGTGGTGGC+CGG | - | chr3_3:70827648-70827667 | None:intergenic | 30.0% |
| !!! | TTTTTTTTGTGGTGGTTTTG+TGG | - | chr3_3:70827744-70827763 | None:intergenic | 30.0% |
| TTACTTACTACTGTCATACT+CGG | + | chr3_3:70827815-70827834 | Msa0469110:intron | 30.0% | |
| TAAACTTTGTATCATCTACG+CGG | - | chr3_3:70827866-70827885 | None:intergenic | 30.0% | |
| !!! | TTAATTTTTTTTGTGGTGGC+CGG | - | chr3_3:70827960-70827979 | None:intergenic | 30.0% |
| TTACTTACTACTGTCATACT+CGG | + | chr3_3:70827815-70827834 | Msa0469110:intron | 30.0% | |
| TAAACTTTGTATCATCTACG+CGG | - | chr3_3:70827866-70827885 | None:intergenic | 30.0% | |
| ! | TGGATTAATTGTTTTCCGAT+TGG | - | chr3_3:70828230-70828249 | None:intergenic | 30.0% |
| TAACAAACCAAATTGTAAGG+TGG | - | chr3_3:70828250-70828269 | None:intergenic | 30.0% | |
| TTGTGTGCATAATGACAATA+AGG | - | chr3_3:70828522-70828541 | None:intergenic | 30.0% | |
| AAGTAATTGATCACTTGAGA+AGG | - | chr3_3:70828593-70828612 | None:intergenic | 30.0% | |
| !!! | TAGTCACTTTTGAATTGAAG+TGG | + | chr3_3:70829128-70829147 | Msa0469110:intron | 30.0% |
| ! | ACTAAACTACTCTGGATTTT+GGG | - | chr3_3:70829329-70829348 | None:intergenic | 30.0% |
| ! | AACTAAACTACTCTGGATTT+TGG | - | chr3_3:70829330-70829349 | None:intergenic | 30.0% |
| AAATCCAGAGTAGTTTAGTT+TGG | + | chr3_3:70829330-70829349 | Msa0469110:intron | 30.0% | |
| AAGCTCGTTTAGACAAAAAT+GGG | + | chr3_3:70829365-70829384 | Msa0469110:intron | 30.0% | |
| GTCATCAAAGTTGTCTAATT+TGG | - | chr3_3:70829717-70829736 | None:intergenic | 30.0% | |
| !! | TATTTTTGTCCAATCACAAG+AGG | - | chr3_3:70829752-70829771 | None:intergenic | 30.0% |
| TTAAATACATCTACTCTCTC+TGG | + | chr3_3:70829978-70829997 | Msa0469110:intron | 30.0% | |
| !! | CTTTTGATTATAGGAGTGAT+CGG | + | chr3_3:70830106-70830125 | Msa0469110:intron | 30.0% |
| ! | ACTTTGTAATGCTCTAGATA+AGG | + | chr3_3:70830469-70830488 | Msa0469110:intron | 30.0% |
| TAAATTTCACCACAAGGAAA+TGG | + | chr3_3:70830683-70830702 | Msa0469110:intron | 30.0% | |
| TATTAGTAACACATGGATGT+TGG | + | chr3_3:70830737-70830756 | Msa0469110:intron | 30.0% | |
| TGTATAGAAACCTACTTCAA+CGG | + | chr3_3:70830805-70830824 | Msa0469110:intron | 30.0% | |
| TATGTAGTGTGTATACTCTT+TGG | - | chr3_3:70830916-70830935 | None:intergenic | 30.0% | |
| GTATACACACTACATATATG+AGG | + | chr3_3:70830920-70830939 | Msa0469110:intron | 30.0% | |
| AATTCATCTATGCAAAGTGT+CGG | + | chr3_3:70830966-70830985 | Msa0469110:intron | 30.0% | |
| ACCTTAAATCATGCAAATCT+TGG | + | chr3_3:70831159-70831178 | Msa0469110:intron | 30.0% | |
| CCTTAAATCATGCAAATCTT+GGG | + | chr3_3:70831160-70831179 | Msa0469110:intron | 30.0% | |
| GGACAGTTTATGCTATATAT+AGG | - | chr3_3:70831240-70831259 | None:intergenic | 30.0% | |
| !! | TCAGGAGTATTAATGATTCA+AGG | + | chr3_3:70831534-70831553 | Msa0469110:intron | 30.0% |
| ATCTCCAACAATCATCAATA+GGG | - | chr3_3:70831595-70831614 | None:intergenic | 30.0% | |
| TTGGAGATGTGACAAAAATT+GGG | + | chr3_3:70831607-70831626 | Msa0469110:CDS | 30.0% | |
| ATATATGTAGTAACTGATCC+TGG | + | chr3_3:70831704-70831723 | Msa0469110:CDS | 30.0% | |
| TTATTCAAGAAGAACCATTG+TGG | + | chr3_3:70831771-70831790 | Msa0469110:CDS | 30.0% | |
| ! | TTCAAAACAATTGATGGTAG+AGG | + | chr3_3:70831851-70831870 | Msa0469110:CDS | 30.0% |
| ATACATGATTGTAAAAGAGG+TGG | + | chr3_3:70831950-70831969 | Msa0469110:CDS | 30.0% | |
| TACATGATTGTAAAAGAGGT+GGG | + | chr3_3:70831951-70831970 | Msa0469110:CDS | 30.0% | |
| ! | TTCAAGAGAAAGTTTTACCT+TGG | - | chr3_3:70832274-70832293 | None:intergenic | 30.0% |
| TTCAAATGGGTCATATATTG+CGG | - | chr3_3:70832581-70832600 | None:intergenic | 30.0% | |
| AAATACGGTCAAAGTAAGTT+AGG | - | chr3_3:70832619-70832638 | None:intergenic | 30.0% | |
| TTAAGCTCAAAGTTATGCAT+TGG | + | chr3_3:70832755-70832774 | Msa0469110:intron | 30.0% | |
| TCAACTGTGTCAAGTATTAT+GGG | + | chr3_3:70832792-70832811 | Msa0469110:intron | 30.0% | |
| AATTGGAATTGGAGATCAAA+TGG | + | chr3_3:70832970-70832989 | Msa0469110:CDS | 30.0% | |
| CTTTCAAAACTAGATACAGT+TGG | - | chr3_3:70833224-70833243 | None:intergenic | 30.0% | |
| !! | TTGTTTTGTAACTACAACCT+TGG | + | chr3_3:70833293-70833312 | Msa0469110:three_prime_UTR | 30.0% |
| ! | TTGATTTGATCATGTGAAGA+TGG | + | chr3_3:70833500-70833519 | Msa0469110:three_prime_UTR | 30.0% |
| GACTTCTGAACATATGAAGA+TGG | - | chr3_3:70824611-70824630 | None:intergenic | 35.0% | |
| !! | TACGAAAAGCATCTCAGTTT+GGG | + | chr3_3:70824631-70824650 | Msa0469110:CDS | 35.0% |
| AGATGTGCGATAAGTATGAT+AGG | + | chr3_3:70824751-70824770 | Msa0469110:CDS | 35.0% | |
| GTCGTATCGTAAAATCAATG+TGG | - | chr3_3:70825141-70825160 | None:intergenic | 35.0% | |
| GTGTTAAGTCATACGTTCTT+TGG | - | chr3_3:70825200-70825219 | None:intergenic | 35.0% | |
| !!! | GTGTGTCTTGCTATTTTTAG+TGG | - | chr3_3:70825718-70825737 | None:intergenic | 35.0% |
| TAACTTGAATCATGCACATC+CGG | + | chr3_3:70825959-70825978 | Msa0469110:intron | 35.0% | |
| TACGTTGTGTGCTTATTGAT+AGG | - | chr3_3:70825985-70826004 | None:intergenic | 35.0% | |
| GATGTGAATGTCCTAATGTA+CGG | + | chr3_3:70826502-70826521 | Msa0469110:intron | 35.0% | |
| ! | TCTCTAGAAATCATGTGCTT+TGG | - | chr3_3:70826628-70826647 | None:intergenic | 35.0% |
| TCTTTGTACAAAGGCAAATG+CGG | - | chr3_3:70826694-70826713 | None:intergenic | 35.0% | |
| !! | AAATCGGTTTTCCGTTACTT+AGG | + | chr3_3:70826739-70826758 | Msa0469110:intron | 35.0% |
| GTCACAAAACCAACCATATA+TGG | + | chr3_3:70826796-70826815 | Msa0469110:intron | 35.0% | |
| GTTTAGCGCAATGTAAATGA+TGG | + | chr3_3:70827441-70827460 | Msa0469110:intron | 35.0% | |
| !!! | TTATTTTTTATGTGGTGGCC+GGG | - | chr3_3:70827647-70827666 | None:intergenic | 35.0% |
| !!! | TAATTTTTTTTGTGGTGGCC+GGG | - | chr3_3:70827959-70827978 | None:intergenic | 35.0% |
| !!! | GTTTTAAGCTAGCTTTACGA+TGG | + | chr3_3:70828122-70828141 | Msa0469110:intron | 35.0% |
| CAATAAGGAATCATACGAAC+TGG | - | chr3_3:70828507-70828526 | None:intergenic | 35.0% | |
| TGAATTGAAGTGGATGAAAG+TGG | + | chr3_3:70829138-70829157 | Msa0469110:intron | 35.0% | |
| CAATTGGAATCTCACTGTAT+TGG | + | chr3_3:70829276-70829295 | Msa0469110:intron | 35.0% | |
| !!! | GGATCACTTTTTTCGTCAAA+AGG | - | chr3_3:70829305-70829324 | None:intergenic | 35.0% |
| CTAAACGAGCTTCTTCAAAT+TGG | - | chr3_3:70829357-70829376 | None:intergenic | 35.0% | |
| GAAGCTCGTTTAGACAAAAA+TGG | + | chr3_3:70829364-70829383 | Msa0469110:intron | 35.0% | |
| AGCTCGTTTAGACAAAAATG+GGG | + | chr3_3:70829366-70829385 | Msa0469110:intron | 35.0% | |
| CATTTAACACTTCTCACACA+AGG | - | chr3_3:70829438-70829457 | None:intergenic | 35.0% | |
| !! | CTTGTGTGAGAAGTGTTAAA+TGG | + | chr3_3:70829436-70829455 | Msa0469110:intron | 35.0% |
| TTTGCACATATTCCACATTG+AGG | + | chr3_3:70829674-70829693 | Msa0469110:intron | 35.0% | |
| ACAAATATCACTCCTCAATG+TGG | - | chr3_3:70829689-70829708 | None:intergenic | 35.0% | |
| CAATCACAAGAGGAGAAAAT+TGG | - | chr3_3:70829742-70829761 | None:intergenic | 35.0% | |
| ! | CAATTTTCTCCTCTTGTGAT+TGG | + | chr3_3:70829740-70829759 | Msa0469110:intron | 35.0% |
| AGTATGTGTTAGTATCGTGT+TGG | + | chr3_3:70830133-70830152 | Msa0469110:intron | 35.0% | |
| GAAATGAAATGTGCTGAAGA+TGG | - | chr3_3:70830315-70830334 | None:intergenic | 35.0% | |
| ! | CTAGAGCATTACAAAGTGAT+GGG | - | chr3_3:70830466-70830485 | None:intergenic | 35.0% |
| ! | TCTAGAGCATTACAAAGTGA+TGG | - | chr3_3:70830467-70830486 | None:intergenic | 35.0% |
| TTGCAAATGTTGAATTGCAG+AGG | + | chr3_3:70830656-70830675 | Msa0469110:intron | 35.0% | |
| TGCAAATGTTGAATTGCAGA+GGG | + | chr3_3:70830657-70830676 | Msa0469110:intron | 35.0% | |
| GGGAAATAAATTTCACCACA+AGG | + | chr3_3:70830677-70830696 | Msa0469110:intron | 35.0% | |
| AAATGGAACAGGAATATGTG+TGG | + | chr3_3:70830700-70830719 | Msa0469110:intron | 35.0% | |
| ATTACTATAGGTTTCAGCCA+TGG | - | chr3_3:70830831-70830850 | None:intergenic | 35.0% | |
| ! | TGAGTTGAAATTCACTAAGG+TGG | + | chr3_3:70830856-70830875 | Msa0469110:intron | 35.0% |
| GAGTTGAAATTCACTAAGGT+GGG | + | chr3_3:70830857-70830876 | Msa0469110:intron | 35.0% | |
| AGTTGAAATTCACTAAGGTG+GGG | + | chr3_3:70830858-70830877 | Msa0469110:intron | 35.0% | |
| TCTACTTGCTCTAACTGTAA+AGG | + | chr3_3:70830890-70830909 | Msa0469110:intron | 35.0% | |
| CCCAAGATTTGCATGATTTA+AGG | - | chr3_3:70831163-70831182 | None:intergenic | 35.0% | |
| TCAATCAAAAGAAACAGGGA+AGG | - | chr3_3:70831293-70831312 | None:intergenic | 35.0% | |
| !! | TTCCCTGTTTCTTTTGATTG+AGG | + | chr3_3:70831292-70831311 | Msa0469110:intron | 35.0% |
| !! | TCCCTGTTTCTTTTGATTGA+GGG | + | chr3_3:70831293-70831312 | Msa0469110:intron | 35.0% |
| ACCCTCAATCAAAAGAAACA+GGG | - | chr3_3:70831297-70831316 | None:intergenic | 35.0% | |
| TACCCTCAATCAAAAGAAAC+AGG | - | chr3_3:70831298-70831317 | None:intergenic | 35.0% | |
| TAATTCAGGATCTTGAAGTG+GGG | - | chr3_3:70831400-70831419 | None:intergenic | 35.0% | |
| CTAATTCAGGATCTTGAAGT+GGG | - | chr3_3:70831401-70831420 | None:intergenic | 35.0% | |
| ACTAATTCAGGATCTTGAAG+TGG | - | chr3_3:70831402-70831421 | None:intergenic | 35.0% | |
| ACATCTTGGACTACTAATTC+AGG | - | chr3_3:70831414-70831433 | None:intergenic | 35.0% | |
| AACTTAGCATTCCTTTCTTG+TGG | + | chr3_3:70831560-70831579 | Msa0469110:CDS | 35.0% | |
| CATCTCCAACAATCATCAAT+AGG | - | chr3_3:70831596-70831615 | None:intergenic | 35.0% | |
| GTTGGAGATGTGACAAAAAT+TGG | + | chr3_3:70831606-70831625 | Msa0469110:CDS | 35.0% | |
| TATCTTAATGTTCCTGGCTT+TGG | - | chr3_3:70831746-70831765 | None:intergenic | 35.0% | |
| AAGCCAGGAACATTAAGATA+TGG | + | chr3_3:70831746-70831765 | Msa0469110:CDS | 35.0% | |
| ACACCATATCTTAATGTTCC+TGG | - | chr3_3:70831752-70831771 | None:intergenic | 35.0% | |
| AGAGATACACCTACACATTA+TGG | + | chr3_3:70831986-70832005 | Msa0469110:CDS | 35.0% | |
| ! | CACCTACACATTATGGTTTT+AGG | + | chr3_3:70831993-70832012 | Msa0469110:CDS | 35.0% |
| GTCCTAAAACCATAATGTGT+AGG | - | chr3_3:70831998-70832017 | None:intergenic | 35.0% | |
| !!! | ATGGAGTGTCTATTTTTGGT+GGG | + | chr3_3:70832032-70832051 | Msa0469110:CDS | 35.0% |
| ! | ACCATTGCCTTTAACCATTT+TGG | + | chr3_3:70832226-70832245 | Msa0469110:CDS | 35.0% |
| TCCAAAATGGTTAAAGGCAA+TGG | - | chr3_3:70832230-70832249 | None:intergenic | 35.0% | |
| TCCTTCTCCAAAATGGTTAA+AGG | - | chr3_3:70832236-70832255 | None:intergenic | 35.0% | |
| TACATTTGTAGATGTAGGCA+TGG | + | chr3_3:70832361-70832380 | Msa0469110:intron | 35.0% | |
| ! | TAGGCATGGATATTTTCATG+TGG | + | chr3_3:70832375-70832394 | Msa0469110:CDS | 35.0% |
| TGAACAATGACTACACACAT+TGG | + | chr3_3:70832398-70832417 | Msa0469110:CDS | 35.0% | |
| AAGCAAGAAATCTATTGCCT+TGG | - | chr3_3:70832468-70832487 | None:intergenic | 35.0% | |
| !! | CTCTTTGAAGGTATTGTCAT+TGG | - | chr3_3:70832491-70832510 | None:intergenic | 35.0% |
| CAATGACAATACCTTCAAAG+AGG | + | chr3_3:70832489-70832508 | Msa0469110:CDS | 35.0% | |
| TCAAATGGGTCATATATTGC+GGG | - | chr3_3:70832580-70832599 | None:intergenic | 35.0% | |
| GTCAACTGTGTCAAGTATTA+TGG | + | chr3_3:70832791-70832810 | Msa0469110:intron | 35.0% | |
| GACAAAGTCAATGGAAGAAT+TGG | + | chr3_3:70832953-70832972 | Msa0469110:CDS | 35.0% | |
| GTCAATGGAAGAATTGGAAT+TGG | + | chr3_3:70832959-70832978 | Msa0469110:CDS | 35.0% | |
| TGTTAAACGGTGCATTCTTT+AGG | + | chr3_3:70833001-70833020 | Msa0469110:CDS | 35.0% | |
| ! | ATGATGATGTTGATAGACAC+AGG | + | chr3_3:70833347-70833366 | Msa0469110:three_prime_UTR | 35.0% |
| !! | CTACGAAAAGCATCTCAGTT+TGG | + | chr3_3:70824630-70824649 | Msa0469110:CDS | 40.0% |
| ! | TAAACATGGTGTCAAAGGCT+TGG | + | chr3_3:70824821-70824840 | Msa0469110:CDS | 40.0% |
| ! | TTGGTGATAGGAATGCTAAG+TGG | + | chr3_3:70824840-70824859 | Msa0469110:CDS | 40.0% |
| !! | AATGGTGGACTTTCAGTCAA+TGG | + | chr3_3:70825223-70825242 | Msa0469110:intron | 40.0% |
| ! | CACTTTTGCATCTTCGAAAG+AGG | + | chr3_3:70825735-70825754 | Msa0469110:intron | 40.0% |
| TTGTGTGCTTATTGATAGGC+CGG | - | chr3_3:70825981-70826000 | None:intergenic | 40.0% | |
| ! | ATTTGGTAGCATCATGGGAA+AGG | + | chr3_3:70826372-70826391 | Msa0469110:intron | 40.0% |
| GTCGTATATCACCGTACATT+AGG | - | chr3_3:70826516-70826535 | None:intergenic | 40.0% | |
| GATTGGTATACGGCCATATA+TGG | - | chr3_3:70826812-70826831 | None:intergenic | 40.0% | |
| TTGGCTAGAGATGATGCATT+AGG | - | chr3_3:70827081-70827100 | None:intergenic | 40.0% | |
| !!! | TATTTTTTATGTGGTGGCCG+GGG | - | chr3_3:70827646-70827665 | None:intergenic | 40.0% |
| !!! | TTTTTGTGGTGGTTTTGTGG+TGG | - | chr3_3:70827741-70827760 | None:intergenic | 40.0% |
| !!! | AATTTTTTTTGTGGTGGCCG+GGG | - | chr3_3:70827958-70827977 | None:intergenic | 40.0% |
| TATGACATGGTTCGTCCAAT+CGG | + | chr3_3:70828212-70828231 | Msa0469110:intron | 40.0% | |
| ATGCACATTTGCCATAGTAG+TGG | - | chr3_3:70828651-70828670 | None:intergenic | 40.0% | |
| ATCCAACAGTTGAGATTCCT+TGG | + | chr3_3:70828689-70828708 | Msa0469110:intron | 40.0% | |
| AGTACATACTTAAGCAGCCA+AGG | - | chr3_3:70828709-70828728 | None:intergenic | 40.0% | |
| ATTCAAAAGTGACTACCACG+TGG | - | chr3_3:70829123-70829142 | None:intergenic | 40.0% | |
| TCATAGCCACACTACTCAAT+TGG | + | chr3_3:70829260-70829279 | Msa0469110:intron | 40.0% | |
| GAGATTCCAATTGAGTAGTG+TGG | - | chr3_3:70829269-70829288 | None:intergenic | 40.0% | |
| ! | AAACTACTCTGGATTTTGGG+TGG | - | chr3_3:70829326-70829345 | None:intergenic | 40.0% |
| TGGACCAAACTAAACTACTC+TGG | - | chr3_3:70829337-70829356 | None:intergenic | 40.0% | |
| AAATGGGGTCAATGAGATCA+AGG | + | chr3_3:70829381-70829400 | Msa0469110:intron | 40.0% | |
| AATGGGGTCAATGAGATCAA+GGG | + | chr3_3:70829382-70829401 | Msa0469110:intron | 40.0% | |
| ! | GAGATTAGCCACTAAACTGT+AGG | + | chr3_3:70829407-70829426 | Msa0469110:intron | 40.0% |
| TAACACTTCTCACACAAGGT+GGG | - | chr3_3:70829434-70829453 | None:intergenic | 40.0% | |
| TTAACACTTCTCACACAAGG+TGG | - | chr3_3:70829435-70829454 | None:intergenic | 40.0% | |
| TAAATGGAACATAGCCCACA+TGG | + | chr3_3:70829452-70829471 | Msa0469110:intron | 40.0% | |
| AAATGGAACATAGCCCACAT+GGG | + | chr3_3:70829453-70829472 | Msa0469110:intron | 40.0% | |
| ACATGTGAGTATGAGAGAGA+GGG | + | chr3_3:70829808-70829827 | Msa0469110:intron | 40.0% | |
| TTGATTATAGGAGTGATCGG+AGG | + | chr3_3:70830109-70830128 | Msa0469110:intron | 40.0% | |
| GGTGTGTAACACAAATCAGA+TGG | + | chr3_3:70830154-70830173 | Msa0469110:intron | 40.0% | |
| ! | CATTACAAAGTGATGGGATC+AGG | - | chr3_3:70830460-70830479 | None:intergenic | 40.0% |
| ATTCCTGTTCCATTTCCTTG+TGG | - | chr3_3:70830695-70830714 | None:intergenic | 40.0% | |
| GAACAGGAATATGTGTGGAT+GGG | + | chr3_3:70830705-70830724 | Msa0469110:intron | 40.0% | |
| ! | TAACACATGGATGTTGGTGA+GGG | + | chr3_3:70830743-70830762 | Msa0469110:intron | 40.0% |
| AAGTGGGGAAGATTGAATGA+AGG | - | chr3_3:70831385-70831404 | None:intergenic | 40.0% | |
| GCATTCCTTTCTTGTGGAAA+TGG | + | chr3_3:70831566-70831585 | Msa0469110:CDS | 40.0% | |
| ! | GCAACCCTATTGATGATTGT+TGG | + | chr3_3:70831588-70831607 | Msa0469110:CDS | 40.0% |
| TGCATGTTTGCCAAATCCAA+TGG | - | chr3_3:70831663-70831682 | None:intergenic | 40.0% | |
| GGATTTGGCAAACATGCAAT+TGG | + | chr3_3:70831665-70831684 | Msa0469110:CDS | 40.0% | |
| TTTGGCAAACATGCAATTGG+AGG | + | chr3_3:70831668-70831687 | Msa0469110:CDS | 40.0% | |
| CGCTTGAAGATTATCCACAA+TGG | - | chr3_3:70831788-70831807 | None:intergenic | 40.0% | |
| GATAATCTTCAAGCGTGACA+TGG | + | chr3_3:70831793-70831812 | Msa0469110:CDS | 40.0% | |
| !!! | GGTGATGGAGTGTCTATTTT+TGG | + | chr3_3:70832028-70832047 | Msa0469110:CDS | 40.0% |
| !!! | GATGGAGTGTCTATTTTTGG+TGG | + | chr3_3:70832031-70832050 | Msa0469110:CDS | 40.0% |
| !! | TTTTTGGTGGGAGTCATGTT+TGG | + | chr3_3:70832044-70832063 | Msa0469110:CDS | 40.0% |
| ! | TTTTGGTGGGAGTCATGTTT+GGG | + | chr3_3:70832045-70832064 | Msa0469110:CDS | 40.0% |
| TCTCTTTCTAATTGCCGTGA+TGG | + | chr3_3:70832079-70832098 | Msa0469110:CDS | 40.0% | |
| !! | GCCTTTAACCATTTTGGAGA+AGG | + | chr3_3:70832232-70832251 | Msa0469110:CDS | 40.0% |
| GAACTAGTCCTTCTCCAAAA+TGG | - | chr3_3:70832243-70832262 | None:intergenic | 40.0% | |
| ! | GACTAGTTCAAAGAATGCCA+AGG | + | chr3_3:70832254-70832273 | Msa0469110:CDS | 40.0% |
| CATTGGAGAATGTATGCCAT+AGG | + | chr3_3:70832415-70832434 | Msa0469110:CDS | 40.0% | |
| AATCCAACTATCAACAGCCA+AGG | + | chr3_3:70832448-70832467 | Msa0469110:CDS | 40.0% | |
| CATGGATCTAACCTCTTTGA+AGG | - | chr3_3:70832503-70832522 | None:intergenic | 40.0% | |
| ! | ATGCATTGGCATGCGTAATA+AGG | + | chr3_3:70832769-70832788 | Msa0469110:intron | 40.0% |
| CTGTGTCAAGTATTATGGGA+CGG | + | chr3_3:70832796-70832815 | Msa0469110:intron | 40.0% | |
| AGAATGCAGGACAAAGTCAA+TGG | + | chr3_3:70832944-70832963 | Msa0469110:CDS | 40.0% | |
| !! | CTATGCAAGAGCATCTAGTT+TGG | + | chr3_3:70833050-70833069 | Msa0469110:CDS | 40.0% |
| AGAGATGCTACTAGAGATGA+TGG | - | chr3_3:70833084-70833103 | None:intergenic | 40.0% | |
| GGATCACTAAACTGCAGAAA+AGG | + | chr3_3:70833117-70833136 | Msa0469110:CDS | 40.0% | |
| ATTGTTGTAGACACAAGCCA+AGG | - | chr3_3:70833313-70833332 | None:intergenic | 40.0% | |
| ! | TGCTAAGTGGATTTCCACCT+CGG | + | chr3_3:70824853-70824872 | Msa0469110:CDS | 45.0% |
| TTCTCTGATTGACCATTCCG+AGG | - | chr3_3:70824873-70824892 | None:intergenic | 45.0% | |
| GGACTTTCAGTCAATGGTCA+TGG | + | chr3_3:70825229-70825248 | Msa0469110:intron | 45.0% | |
| GGAAGAGTGATATGCAAGCA+AGG | + | chr3_3:70826760-70826779 | Msa0469110:intron | 45.0% | |
| GGTATACGGCCATATATGGT+TGG | - | chr3_3:70826808-70826827 | None:intergenic | 45.0% | |
| CGTGAAAGAAGCCACTACTA+TGG | + | chr3_3:70828637-70828656 | Msa0469110:intron | 45.0% | |
| AGCCAAGGAATCTCAACTGT+TGG | - | chr3_3:70828694-70828713 | None:intergenic | 45.0% | |
| TCTGAAAAAGATGTGCCACG+TGG | + | chr3_3:70829105-70829124 | Msa0469110:intron | 45.0% | |
| TCTCCATATCCCTCTATGCA+TGG | - | chr3_3:70829216-70829235 | None:intergenic | 45.0% | |
| GCATAGAGGGATATGGAGAT+AGG | + | chr3_3:70829217-70829236 | Msa0469110:intron | 45.0% | |
| AACACTTCTCACACAAGGTG+GGG | - | chr3_3:70829433-70829452 | None:intergenic | 45.0% | |
| GAATGCATGTTCACCCATGT+GGG | - | chr3_3:70829469-70829488 | None:intergenic | 45.0% | |
| AGAATGCATGTTCACCCATG+TGG | - | chr3_3:70829470-70829489 | None:intergenic | 45.0% | |
| TCTGTGTCTCAACCCATTCA+CGG | + | chr3_3:70829492-70829511 | Msa0469110:intron | 45.0% | |
| AAACCGTACCATCCGTGAAT+GGG | - | chr3_3:70829507-70829526 | None:intergenic | 45.0% | |
| AAAACCGTACCATCCGTGAA+TGG | - | chr3_3:70829508-70829527 | None:intergenic | 45.0% | |
| CACATGTGAGTATGAGAGAG+AGG | + | chr3_3:70829807-70829826 | Msa0469110:intron | 45.0% | |
| TGATGGGATCAGGATAGCAA+GGG | - | chr3_3:70830450-70830469 | None:intergenic | 45.0% | |
| TCACCACAAGGAAATGGAAC+AGG | + | chr3_3:70830689-70830708 | Msa0469110:intron | 45.0% | |
| GGAACAGGAATATGTGTGGA+TGG | + | chr3_3:70830704-70830723 | Msa0469110:intron | 45.0% | |
| GTAACACATGGATGTTGGTG+AGG | + | chr3_3:70830742-70830761 | Msa0469110:intron | 45.0% | |
| ATTCACTAAGGTGGGGTGAT+TGG | + | chr3_3:70830865-70830884 | Msa0469110:intron | 45.0% | |
| TTCACTAAGGTGGGGTGATT+GGG | + | chr3_3:70830866-70830885 | Msa0469110:intron | 45.0% | |
| GAGGGTAGCTCAAGAAGTTA+TGG | + | chr3_3:70831311-70831330 | Msa0469110:intron | 45.0% | |
| GAGAGTAGCATGAATGAGAG+TGG | - | chr3_3:70831342-70831361 | None:intergenic | 45.0% | |
| GGGGAAGATTGAATGAAGGA+AGG | - | chr3_3:70831381-70831400 | None:intergenic | 45.0% | |
| ! | GGTTGCCATTTCCACAAGAA+AGG | - | chr3_3:70831574-70831593 | None:intergenic | 45.0% |
| CGTTTAGCAGATTGTGCCAT+TGG | + | chr3_3:70831644-70831663 | Msa0469110:CDS | 45.0% | |
| ! | GCAGATTGTGCCATTGGATT+TGG | + | chr3_3:70831650-70831669 | Msa0469110:CDS | 45.0% |
| CATGCAATTGGAGGAAGAGA+TGG | + | chr3_3:70831677-70831696 | Msa0469110:CDS | 45.0% | |
| GGAACAAATGTGCACATTGC+TGG | + | chr3_3:70831872-70831891 | Msa0469110:CDS | 45.0% | |
| ACAAATGTGCACATTGCTGG+TGG | + | chr3_3:70831875-70831894 | Msa0469110:CDS | 45.0% | |
| !!! | GGTTTTAGGACCCTTTCTGA+TGG | + | chr3_3:70832007-70832026 | Msa0469110:CDS | 45.0% |
| CACTCCATCACCATCAGAAA+GGG | - | chr3_3:70832020-70832039 | None:intergenic | 45.0% | |
| ACACTCCATCACCATCAGAA+AGG | - | chr3_3:70832021-70832040 | None:intergenic | 45.0% | |
| TGGAGAATGTATGCCATAGG+AGG | + | chr3_3:70832418-70832437 | Msa0469110:CDS | 45.0% | |
| !! | TGGATTAGCACTTCCTCCTA+TGG | - | chr3_3:70832434-70832453 | None:intergenic | 45.0% |
| !! | TTGCCTTGGCTGTTGATAGT+TGG | - | chr3_3:70832454-70832473 | None:intergenic | 45.0% |
| ATGGGTCATATATTGCGGGA+CGG | - | chr3_3:70832576-70832595 | None:intergenic | 45.0% | |
| GTCAAGTATTATGGGACGGA+TGG | + | chr3_3:70832800-70832819 | Msa0469110:intron | 45.0% | |
| !!! | TAATTTATTTATTTTTTATG+TGG | - | chr3_3:70827655-70827674 | None:intergenic | 5.0% |
| !! | ATAAATAAATTAATATAACA+TGG | + | chr3_3:70827663-70827682 | Msa0469110:intron | 5.0% |
| !!! | TTTATATTAATTTTTTTTTG+TGG | - | chr3_3:70827755-70827774 | None:intergenic | 5.0% |
| !!! | ATTTATATTAATTTTTTTTG+TGG | - | chr3_3:70827967-70827986 | None:intergenic | 5.0% |
| !! | TCATTAAATAAATAAATATT+TGG | - | chr3_3:70831195-70831214 | None:intergenic | 5.0% |
| !! | AAATATTTATTTATTTAATG+AGG | + | chr3_3:70831194-70831213 | Msa0469110:intron | 5.0% |
| !!! | ATTATACTTTTTTTTTATTA+GGG | + | chr3_3:70832303-70832322 | Msa0469110:intron | 5.0% |
| ATCTCAGTTTGGGCGCATCA+TGG | + | chr3_3:70824641-70824660 | Msa0469110:CDS | 50.0% | |
| TGGAGTCTCGTACTTGGATC+AGG | + | chr3_3:70824689-70824708 | Msa0469110:CDS | 50.0% | |
| !! | GGTGTCAAAGGCTTGGTGAT+AGG | + | chr3_3:70824828-70824847 | Msa0469110:CDS | 50.0% |
| ! | AGTGGATTTCCACCTCGGAA+TGG | + | chr3_3:70824858-70824877 | Msa0469110:CDS | 50.0% |
| TCTGATTGACCATTCCGAGG+TGG | - | chr3_3:70824870-70824889 | None:intergenic | 50.0% | |
| AAGGTAGCTAGTTGCGCACA+TGG | + | chr3_3:70826391-70826410 | Msa0469110:intron | 50.0% | |
| CCAACTGAGTTATGCTCACG+AGG | - | chr3_3:70827576-70827595 | None:intergenic | 50.0% | |
| CCTCGTGAGCATAACTCAGT+TGG | + | chr3_3:70827573-70827592 | Msa0469110:intron | 50.0% | |
| TTGAACCCCGAACCTTGTTG+TGG | - | chr3_3:70827711-70827730 | None:intergenic | 50.0% | |
| TTGAACCCCGAACCTTGTTG+TGG | - | chr3_3:70827711-70827730 | None:intergenic | 50.0% | |
| !! | TAACTATAGCGTCGGTCGTC+AGG | - | chr3_3:70828917-70828936 | None:intergenic | 50.0% |
| TGTCTCAACCCATTCACGGA+TGG | + | chr3_3:70829496-70829515 | Msa0469110:intron | 50.0% | |
| CAACCCATTCACGGATGGTA+CGG | + | chr3_3:70829501-70829520 | Msa0469110:intron | 50.0% | |
| ! | GTGATGGGATCAGGATAGCA+AGG | - | chr3_3:70830451-70830470 | None:intergenic | 50.0% |
| TGTGTGACGTGATCCATGAG+TGG | - | chr3_3:70830519-70830538 | None:intergenic | 50.0% | |
| ! | CATGGATGTTGGTGAGGGAA+TGG | + | chr3_3:70830748-70830767 | Msa0469110:intron | 50.0% |
| GAAACCTACTTCAACGGCCA+TGG | + | chr3_3:70830811-70830830 | Msa0469110:intron | 50.0% | |
| TCACTAAGGTGGGGTGATTG+GGG | + | chr3_3:70830867-70830886 | Msa0469110:intron | 50.0% | |
| GGATTCACAGCATGATCACC+AGG | - | chr3_3:70831725-70831744 | None:intergenic | 50.0% | |
| CATGCTGTGAATCCAAAGCC+AGG | + | chr3_3:70831731-70831750 | Msa0469110:CDS | 50.0% | |
| ! | AGGACCCTTTCTGATGGTGA+TGG | + | chr3_3:70832013-70832032 | Msa0469110:CDS | 50.0% |
| GTCATATATTGCGGGACGGA+GGG | - | chr3_3:70832572-70832591 | None:intergenic | 50.0% | |
| GGTGCATTCTTTAGGCCATC+AGG | + | chr3_3:70833009-70833028 | Msa0469110:CDS | 50.0% | |
| TTCTTTAGGCCATCAGGAGC+AGG | + | chr3_3:70833015-70833034 | Msa0469110:CDS | 50.0% | |
| GATGATGAACCTGCTCCTGA+TGG | - | chr3_3:70833027-70833046 | None:intergenic | 50.0% | |
| CGCATCATGGCCTCAGATGT+GGG | + | chr3_3:70824654-70824673 | Msa0469110:CDS | 55.0% | |
| GCGTACTGGAGTCTCGTACT+TGG | + | chr3_3:70824683-70824702 | Msa0469110:CDS | 55.0% | |
| AAGGTTCGGGGTTCAAACCC+CGG | + | chr3_3:70827626-70827645 | Msa0469110:intron | 55.0% | |
| ! | ATGGTTCGGGGTTCAAACCC+CGG | + | chr3_3:70827682-70827701 | Msa0469110:intron | 55.0% |
| ! | AACCCCGAACCTTGTTGTGG+TGG | - | chr3_3:70827708-70827727 | None:intergenic | 55.0% |
| AAGGTTCGGGGTTCAAACCC+CGG | + | chr3_3:70827626-70827645 | Msa0469110:intron | 55.0% | |
| !!! | TGTGGTGGTTTTGTGGTGGC+CGG | - | chr3_3:70827737-70827756 | None:intergenic | 55.0% |
| AAGGTTCGGGGTTCAAACCC+CGG | + | chr3_3:70827626-70827645 | Msa0469110:intron | 55.0% | |
| ! | AACCCCGAACCTTGTTGTGG+TGG | - | chr3_3:70827708-70827727 | None:intergenic | 55.0% |
| AAGGTTCGGGGTTCAAACCC+CGG | + | chr3_3:70827626-70827645 | Msa0469110:intron | 55.0% | |
| CTGTGAGGGCCATGCATAGA+GGG | + | chr3_3:70829204-70829223 | Msa0469110:intron | 55.0% | |
| GGGCCATGCATAGAGGGATA+TGG | + | chr3_3:70829210-70829229 | Msa0469110:intron | 55.0% | |
| AGGTGGGGCCTACAGTTTAG+TGG | - | chr3_3:70829418-70829437 | None:intergenic | 55.0% | |
| TCAGCCATGGCCGTTGAAGT+AGG | - | chr3_3:70830818-70830837 | None:intergenic | 55.0% | |
| TGGTGGGAGTCATGTTTGGG+TGG | + | chr3_3:70832048-70832067 | Msa0469110:CDS | 55.0% | |
| GGTCATATATTGCGGGACGG+AGG | - | chr3_3:70832573-70832592 | None:intergenic | 55.0% | |
| GTGACAAAGCGCGAGAATGC+AGG | + | chr3_3:70832931-70832950 | Msa0469110:CDS | 55.0% | |
| GCATCTCTCACTGCATCAGC+TGG | + | chr3_3:70833096-70833115 | Msa0469110:CDS | 55.0% | |
| GCGCATCATGGCCTCAGATG+TGG | + | chr3_3:70824653-70824672 | Msa0469110:CDS | 60.0% | |
| ACGCTTCGTGCCCACATCTG+AGG | - | chr3_3:70824667-70824686 | None:intergenic | 60.0% | |
| GATGTGGGCACGAAGCGTAC+TGG | + | chr3_3:70824669-70824688 | Msa0469110:CDS | 60.0% | |
| AAACCCCGGCCACCACAACA+AGG | + | chr3_3:70827696-70827715 | Msa0469110:intron | 60.0% | |
| ! | GAACCTTGTTGTGGTGGCCG+GGG | - | chr3_3:70827702-70827721 | None:intergenic | 60.0% |
| ! | CGAACCTTGTTGTGGTGGCC+GGG | - | chr3_3:70827703-70827722 | None:intergenic | 60.0% |
| ! | CCGAACCTTGTTGTGGTGGC+CGG | - | chr3_3:70827704-70827723 | None:intergenic | 60.0% |
| CCGGCCACCACAACAAGGTT+CGG | + | chr3_3:70827701-70827720 | Msa0469110:intron | 60.0% | |
| CGGCCACCACAACAAGGTTC+GGG | + | chr3_3:70827702-70827721 | Msa0469110:intron | 60.0% | |
| GGCCACCACAACAAGGTTCG+GGG | + | chr3_3:70827703-70827722 | Msa0469110:intron | 60.0% | |
| !!! | TGGTGGTTTTGTGGTGGCCG+GGG | - | chr3_3:70827735-70827754 | None:intergenic | 60.0% |
| !!! | GTGGTGGTTTTGTGGTGGCC+GGG | - | chr3_3:70827736-70827755 | None:intergenic | 60.0% |
| AAACCCCGGCCACCACAACA+AGG | + | chr3_3:70827696-70827715 | Msa0469110:intron | 60.0% | |
| ! | GAACCTTGTTGTGGTGGCCG+GGG | - | chr3_3:70827702-70827721 | None:intergenic | 60.0% |
| ! | CGAACCTTGTTGTGGTGGCC+GGG | - | chr3_3:70827703-70827722 | None:intergenic | 60.0% |
| ! | CCGAACCTTGTTGTGGTGGC+CGG | - | chr3_3:70827704-70827723 | None:intergenic | 60.0% |
| CCGGCCACCACAACAAGGTT+CGG | + | chr3_3:70827701-70827720 | Msa0469110:intron | 60.0% | |
| CGGCCACCACAACAAGGTTC+GGG | + | chr3_3:70827702-70827721 | Msa0469110:intron | 60.0% | |
| GGCCACCACAACAAGGTTCG+GGG | + | chr3_3:70827703-70827722 | Msa0469110:intron | 60.0% | |
| CCTCTATGCATGGCCCTCAC+AGG | - | chr3_3:70829206-70829225 | None:intergenic | 60.0% | |
| CCTGTGAGGGCCATGCATAG+AGG | + | chr3_3:70829203-70829222 | Msa0469110:intron | 60.0% | |
| TGCATGAGCGTCAACTGCGC+AGG | - | chr3_3:70830348-70830367 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 70824594 | 70833527 | 70824594 | ID=Msa0469110;Name=Msa0469110 |
| chr3_3 | mRNA | 70824594 | 70833527 | 70824594 | ID=Msa0469110-mRNA-1;Parent=Msa0469110;Name=Msa0469110-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.6|0.8|1|1|5|375|501 |
| chr3_3 | exon | 70824594 | 70824879 | 70824594 | ID=Msa0469110-mRNA-1:exon:17318;Parent=Msa0469110-mRNA-1 |
| chr3_3 | exon | 70831319 | 70831439 | 70831319 | ID=Msa0469110-mRNA-1:exon:17319;Parent=Msa0469110-mRNA-1 |
| chr3_3 | exon | 70831538 | 70832275 | 70831538 | ID=Msa0469110-mRNA-1:exon:17320;Parent=Msa0469110-mRNA-1 |
| chr3_3 | exon | 70832372 | 70832510 | 70832372 | ID=Msa0469110-mRNA-1:exon:17321;Parent=Msa0469110-mRNA-1 |
| chr3_3 | exon | 70832931 | 70833527 | 70832931 | ID=Msa0469110-mRNA-1:exon:17322;Parent=Msa0469110-mRNA-1 |
| chr3_3 | CDS | 70824594 | 70824879 | 70824594 | ID=Msa0469110-mRNA-1:cds;Parent=Msa0469110-mRNA-1 |
| chr3_3 | CDS | 70831319 | 70831439 | 70831319 | ID=Msa0469110-mRNA-1:cds;Parent=Msa0469110-mRNA-1 |
| chr3_3 | CDS | 70831538 | 70832275 | 70831538 | ID=Msa0469110-mRNA-1:cds;Parent=Msa0469110-mRNA-1 |
| chr3_3 | CDS | 70832372 | 70832510 | 70832372 | ID=Msa0469110-mRNA-1:cds;Parent=Msa0469110-mRNA-1 |
| chr3_3 | CDS | 70832931 | 70833152 | 70832931 | ID=Msa0469110-mRNA-1:cds;Parent=Msa0469110-mRNA-1 |
| chr3_3 | three_prime_UTR | 70833153 | 70833527 | 70833153 | ID=Msa0469110-mRNA-1:three_prime_utr;Parent=Msa0469110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
