Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134560 | XP_013469776.2 | 98.031 | 457 | 7 | 1 | 1 | 457 | 1 | 455 | 0.0 | 923 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134560 | sp|A0A1P8B590|IQD19_ARATH | 45.127 | 472 | 153 | 20 | 1 | 455 | 60 | 442 | 1.65e-105 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134560 | A0A396JXE9 | 98.031 | 457 | 7 | 1 | 1 | 457 | 1 | 455 | 0.0 | 923 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040200 | Msa0134560 | 0.903425 | 3.515527e-79 | -8.615850e-47 |
| Msa0087890 | Msa0134560 | 0.843878 | 1.068706e-58 | -8.615850e-47 |
| Msa0134560 | Msa0469110 | 0.804458 | 2.139762e-49 | -8.615850e-47 |
| Msa0134560 | Msa0707260 | 0.829855 | 4.075560e-55 | -8.615850e-47 |
| Msa0134560 | Msa0837680 | 0.802963 | 4.371191e-49 | -8.615850e-47 |
| Msa0134560 | Msa1021560 | 0.827509 | 1.504286e-54 | -8.615850e-47 |
| Msa0134560 | Msa1148930 | 0.802975 | 4.346464e-49 | -8.615850e-47 |
| Msa0134560 | Msa1393560 | 0.800326 | 1.518728e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134560 | MtrunA17_Chr1g0204901 | 98.031 | 457 | 7 | 1 | 1 | 457 | 1 | 455 | 0.0 | 923 |
| Msa0134560 | MtrunA17_Chr1g0166431 | 64.179 | 469 | 122 | 11 | 1 | 457 | 7 | 441 | 0.0 | 518 |
| Msa0134560 | MtrunA17_Chr8g0340761 | 38.322 | 441 | 192 | 17 | 1 | 402 | 1 | 400 | 3.54e-43 | 157 |
| Msa0134560 | MtrunA17_Chr8g0389781 | 38.085 | 470 | 203 | 20 | 1 | 422 | 1 | 430 | 1.16e-38 | 145 |
| Msa0134560 | MtrunA17_Chr4g0057321 | 32.568 | 479 | 204 | 15 | 1 | 421 | 1 | 418 | 1.27e-37 | 142 |
| Msa0134560 | MtrunA17_Chr6g0472551 | 35.714 | 322 | 125 | 11 | 135 | 388 | 114 | 421 | 7.19e-34 | 132 |
| Msa0134560 | MtrunA17_Chr7g0273951 | 30.749 | 387 | 191 | 12 | 1 | 372 | 1 | 325 | 4.22e-32 | 126 |
| Msa0134560 | MtrunA17_Chr1g0203711 | 36.496 | 411 | 180 | 13 | 36 | 383 | 9 | 401 | 1.35e-31 | 125 |
| Msa0134560 | MtrunA17_Chr2g0330921 | 30.591 | 389 | 196 | 17 | 1 | 373 | 1 | 331 | 2.42e-25 | 106 |
| Msa0134560 | MtrunA17_Chr4g0020671 | 30.541 | 370 | 179 | 17 | 45 | 371 | 22 | 356 | 2.69e-24 | 104 |
| Msa0134560 | MtrunA17_Chr8g0346021 | 66.667 | 87 | 25 | 2 | 122 | 207 | 114 | 197 | 7.16e-24 | 104 |
| Msa0134560 | MtrunA17_Chr7g0273861 | 29.658 | 263 | 149 | 10 | 136 | 371 | 123 | 376 | 5.02e-20 | 92.0 |
| Msa0134560 | MtrunA17_Chr3g0126901 | 60.526 | 114 | 39 | 3 | 76 | 189 | 56 | 163 | 1.86e-18 | 87.4 |
| Msa0134560 | MtrunA17_Chr4g0060381 | 60.000 | 65 | 26 | 0 | 138 | 202 | 100 | 164 | 2.27e-17 | 84.7 |
| Msa0134560 | MtrunA17_Chr4g0025441 | 71.698 | 53 | 15 | 0 | 137 | 189 | 95 | 147 | 4.06e-17 | 83.2 |
| Msa0134560 | MtrunA17_Chr8g0371131 | 56.923 | 65 | 28 | 0 | 137 | 201 | 70 | 134 | 4.28e-17 | 77.8 |
| Msa0134560 | MtrunA17_Chr1g0172611 | 55.340 | 103 | 42 | 1 | 86 | 184 | 49 | 151 | 1.27e-16 | 81.3 |
| Msa0134560 | MtrunA17_Chr1g0200161 | 50.685 | 73 | 36 | 0 | 134 | 206 | 137 | 209 | 1.54e-16 | 81.6 |
| Msa0134560 | MtrunA17_Chr1g0181581 | 37.500 | 112 | 57 | 2 | 119 | 230 | 103 | 201 | 2.86e-16 | 80.9 |
| Msa0134560 | MtrunA17_Chr3g0135851 | 47.619 | 105 | 53 | 1 | 137 | 241 | 90 | 192 | 5.04e-16 | 80.1 |
| Msa0134560 | MtrunA17_Chr1g0146931 | 67.925 | 53 | 17 | 0 | 137 | 189 | 121 | 173 | 5.97e-16 | 80.1 |
| Msa0134560 | MtrunA17_Chr6g0462191 | 53.846 | 117 | 54 | 0 | 87 | 203 | 56 | 172 | 1.00e-15 | 79.0 |
| Msa0134560 | MtrunA17_Chr7g0263731 | 36.538 | 156 | 94 | 3 | 87 | 239 | 58 | 211 | 3.91e-14 | 74.3 |
| Msa0134560 | MtrunA17_Chr2g0283321 | 32.331 | 133 | 74 | 2 | 130 | 262 | 55 | 171 | 1.40e-12 | 68.2 |
| Msa0134560 | MtrunA17_Chr5g0416161 | 29.771 | 131 | 79 | 2 | 72 | 202 | 66 | 183 | 2.67e-12 | 68.9 |
| Msa0134560 | MtrunA17_Chr4g0045641 | 41.176 | 68 | 40 | 0 | 137 | 204 | 145 | 212 | 2.69e-12 | 68.9 |
| Msa0134560 | MtrunA17_Chr1g0156121 | 29.814 | 161 | 99 | 3 | 49 | 200 | 31 | 186 | 3.61e-12 | 68.6 |
| Msa0134560 | MtrunA17_Chr2g0330051 | 46.903 | 113 | 47 | 2 | 137 | 249 | 77 | 176 | 8.56e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134560 | AT4G14750.1 | 45.127 | 472 | 153 | 20 | 1 | 455 | 1 | 383 | 2.20e-107 | 323 |
| Msa0134560 | AT4G14750.2 | 45.127 | 472 | 153 | 20 | 1 | 455 | 60 | 442 | 1.68e-106 | 323 |
| Msa0134560 | AT4G14750.3 | 45.532 | 470 | 152 | 20 | 1 | 453 | 60 | 442 | 2.01e-106 | 323 |
| Msa0134560 | AT3G16490.1 | 36.105 | 421 | 153 | 17 | 1 | 387 | 1 | 339 | 1.31e-33 | 130 |
| Msa0134560 | AT4G23060.1 | 33.645 | 321 | 174 | 10 | 138 | 426 | 167 | 480 | 5.00e-30 | 122 |
| Msa0134560 | AT4G29150.1 | 36.395 | 294 | 135 | 13 | 127 | 401 | 120 | 380 | 1.66e-28 | 116 |
| Msa0134560 | AT4G00820.1 | 41.250 | 160 | 84 | 2 | 53 | 207 | 47 | 201 | 7.05e-26 | 110 |
| Msa0134560 | AT5G03040.1 | 36.364 | 209 | 104 | 7 | 1 | 206 | 1 | 183 | 4.05e-24 | 105 |
| Msa0134560 | AT5G03040.3 | 36.364 | 209 | 104 | 7 | 1 | 206 | 1 | 183 | 4.05e-24 | 105 |
| Msa0134560 | AT5G03040.2 | 36.364 | 209 | 104 | 7 | 1 | 206 | 1 | 183 | 4.05e-24 | 105 |
| Msa0134560 | AT1G51960.1 | 32.765 | 293 | 132 | 11 | 137 | 414 | 99 | 341 | 3.02e-23 | 100 |
| Msa0134560 | AT1G01110.2 | 67.606 | 71 | 23 | 0 | 137 | 207 | 120 | 190 | 3.63e-22 | 99.8 |
| Msa0134560 | AT3G49260.1 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.05e-20 | 94.7 |
| Msa0134560 | AT3G49260.4 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.05e-20 | 94.7 |
| Msa0134560 | AT3G49260.2 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.05e-20 | 94.7 |
| Msa0134560 | AT3G49260.3 | 60.000 | 70 | 28 | 0 | 137 | 206 | 119 | 188 | 1.05e-20 | 94.7 |
| Msa0134560 | AT1G72670.1 | 31.600 | 250 | 111 | 6 | 1 | 250 | 1 | 190 | 1.87e-20 | 93.6 |
| Msa0134560 | AT2G26180.1 | 42.657 | 143 | 67 | 3 | 108 | 250 | 56 | 183 | 1.46e-18 | 87.8 |
| Msa0134560 | AT3G52290.1 | 53.659 | 123 | 56 | 1 | 89 | 211 | 59 | 180 | 1.50e-18 | 88.2 |
| Msa0134560 | AT5G13460.1 | 29.851 | 268 | 143 | 8 | 137 | 378 | 110 | 358 | 1.96e-18 | 87.8 |
| Msa0134560 | AT5G07240.1 | 49.068 | 161 | 62 | 4 | 48 | 198 | 16 | 166 | 4.27e-18 | 86.3 |
| Msa0134560 | AT5G07240.2 | 49.068 | 161 | 62 | 4 | 48 | 198 | 62 | 212 | 5.61e-18 | 86.3 |
| Msa0134560 | AT1G14380.1 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 4.95e-17 | 84.3 |
| Msa0134560 | AT1G14380.3 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 4.95e-17 | 84.3 |
| Msa0134560 | AT1G14380.4 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 4.95e-17 | 84.3 |
| Msa0134560 | AT1G14380.6 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 6.78e-17 | 83.6 |
| Msa0134560 | AT1G14380.5 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 6.78e-17 | 83.6 |
| Msa0134560 | AT1G14380.2 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 6.78e-17 | 83.6 |
| Msa0134560 | AT3G22190.3 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 8.48e-17 | 82.8 |
| Msa0134560 | AT3G22190.2 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 8.48e-17 | 82.8 |
| Msa0134560 | AT3G22190.4 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 8.48e-17 | 82.8 |
| Msa0134560 | AT3G22190.1 | 67.857 | 56 | 18 | 0 | 134 | 189 | 84 | 139 | 8.48e-17 | 82.8 |
| Msa0134560 | AT1G14380.7 | 30.542 | 203 | 95 | 5 | 1 | 202 | 1 | 158 | 8.99e-17 | 83.2 |
| Msa0134560 | AT5G62070.1 | 44.720 | 161 | 61 | 3 | 48 | 190 | 19 | 169 | 9.43e-17 | 82.4 |
| Msa0134560 | AT4G10640.1 | 35.417 | 144 | 66 | 4 | 50 | 193 | 39 | 155 | 4.87e-16 | 80.5 |
| Msa0134560 | AT1G18840.1 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 5.68e-16 | 80.9 |
| Msa0134560 | AT1G18840.3 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 5.68e-16 | 80.9 |
| Msa0134560 | AT1G18840.2 | 48.611 | 72 | 37 | 0 | 131 | 202 | 102 | 173 | 5.68e-16 | 80.9 |
| Msa0134560 | AT3G51380.1 | 51.163 | 86 | 38 | 2 | 116 | 201 | 19 | 100 | 6.76e-16 | 73.6 |
| Msa0134560 | AT1G17480.1 | 59.016 | 61 | 25 | 0 | 140 | 200 | 96 | 156 | 1.59e-15 | 78.6 |
| Msa0134560 | AT3G59690.2 | 43.243 | 74 | 42 | 0 | 131 | 204 | 162 | 235 | 3.39e-15 | 78.2 |
| Msa0134560 | AT3G59690.1 | 43.243 | 74 | 42 | 0 | 131 | 204 | 162 | 235 | 3.39e-15 | 78.2 |
| Msa0134560 | AT1G74690.1 | 53.846 | 65 | 30 | 0 | 138 | 202 | 113 | 177 | 8.31e-15 | 77.0 |
| Msa0134560 | AT3G09710.1 | 46.667 | 75 | 40 | 0 | 134 | 208 | 104 | 178 | 1.42e-14 | 75.9 |
| Msa0134560 | AT3G09710.2 | 46.667 | 75 | 40 | 0 | 134 | 208 | 104 | 178 | 1.74e-14 | 75.9 |
| Msa0134560 | AT3G49380.1 | 28.814 | 236 | 116 | 6 | 139 | 371 | 111 | 297 | 2.11e-14 | 74.7 |
| Msa0134560 | AT2G43680.1 | 40.541 | 74 | 44 | 0 | 131 | 204 | 316 | 389 | 1.22e-13 | 73.6 |
| Msa0134560 | AT2G43680.4 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.23e-13 | 73.6 |
| Msa0134560 | AT2G43680.2 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.23e-13 | 73.6 |
| Msa0134560 | AT2G43680.3 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.23e-13 | 73.6 |
| Msa0134560 | AT2G43680.5 | 40.541 | 74 | 44 | 0 | 131 | 204 | 315 | 388 | 1.23e-13 | 73.6 |
| Msa0134560 | AT1G19870.1 | 35.135 | 111 | 64 | 2 | 136 | 238 | 213 | 323 | 1.63e-12 | 70.1 |
| Msa0134560 | AT1G19870.2 | 34.127 | 126 | 74 | 3 | 122 | 238 | 15 | 140 | 1.73e-12 | 70.1 |
| Msa0134560 | AT2G26410.2 | 41.379 | 87 | 50 | 1 | 123 | 208 | 132 | 218 | 1.82e-12 | 69.7 |
| Msa0134560 | AT2G26410.1 | 41.379 | 87 | 50 | 1 | 123 | 208 | 132 | 218 | 1.82e-12 | 69.7 |
| Msa0134560 | AT2G02790.1 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 2.38e-12 | 69.7 |
| Msa0134560 | AT2G02790.2 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 2.62e-12 | 69.3 |
| Msa0134560 | AT2G02790.3 | 34.259 | 108 | 63 | 2 | 102 | 202 | 65 | 171 | 2.62e-12 | 69.3 |
Find 90 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAATCTGGCCTTTGTTT+TGG | 0.265547 | 1_3:-66110407 | None:intergenic |
| GAAAATAGATATTCCATAAA+TGG | 0.268629 | 1_3:+66110104 | Msa0134560:CDS |
| AAATGGCCACTGTATGCTTT+TGG | 0.293561 | 1_3:-66110191 | None:intergenic |
| ACTGAGTCGGCGAAGAATTT+CGG | 0.307539 | 1_3:+66110439 | Msa0134560:CDS |
| TATTCATTGTTTGTACTGTC+TGG | 0.322482 | 1_3:+66110986 | Msa0134560:three_prime_UTR |
| AAGAGGATTGGTGAAGTTGC+AGG | 0.322775 | 1_3:+66109317 | Msa0134560:CDS |
| GCTTAATTGACCATGGATAT+TGG | 0.331995 | 1_3:-66110538 | None:intergenic |
| TTTGAGGCTGTTGTTGAAAC+AGG | 0.339969 | 1_3:-66108732 | None:intergenic |
| TACTGAAACAATCCTCAAAA+TGG | 0.341390 | 1_3:-66110208 | None:intergenic |
| AAGTTGCTTTCAGTACTATA+TGG | 0.354723 | 1_3:-66108475 | None:intergenic |
| TTCGGAATTATTCAATTCCT+TGG | 0.358169 | 1_3:-66108811 | None:intergenic |
| TGTCATTGAAGAAGTAATTT+CGG | 0.360028 | 1_3:-66108829 | None:intergenic |
| CATTTGAACCAGAAGTTAAC+CGG | 0.370042 | 1_3:-66108974 | None:intergenic |
| GAAGTTGCAGGCACTGATAA+GGG | 0.372077 | 1_3:+66109329 | Msa0134560:CDS |
| CCATGGAAAATGACTTGTTC+AGG | 0.374329 | 1_3:+66109484 | Msa0134560:CDS |
| TTTGATGTAACAGTTAGTTT+AGG | 0.380732 | 1_3:+66108412 | Msa0134560:five_prime_UTR |
| GATTGCAGCCAGAGGGAGAT+AGG | 0.395111 | 1_3:+66110764 | Msa0134560:intron |
| GCTGTGATCCGGTTAACTTC+TGG | 0.398739 | 1_3:+66108966 | Msa0134560:CDS |
| GTTGTTGAAACAGGAGTAGT+TGG | 0.410248 | 1_3:-66108723 | None:intergenic |
| GCATTTCTGTGATTTAGATT+AGG | 0.412617 | 1_3:-66109462 | None:intergenic |
| AGTTGCCTCTCAAATGAATC+TGG | 0.422643 | 1_3:-66110419 | None:intergenic |
| GCTTTCCTTCTGACACCATT+CGG | 0.437655 | 1_3:-66109440 | None:intergenic |
| GACATTTGTTCTGCATAAGA+TGG | 0.440761 | 1_3:-66110308 | None:intergenic |
| CTTTGCATCCTCACTGGCCT+AGG | 0.440875 | 1_3:-66110479 | None:intergenic |
| CTCAATTCTGTTAAGGCTGA+TGG | 0.443966 | 1_3:-66110167 | None:intergenic |
| AAGCTGCAGCTGCTGTGATC+CGG | 0.446246 | 1_3:+66108955 | Msa0134560:CDS |
| TGAAGTTGCAGGCACTGATA+AGG | 0.452871 | 1_3:+66109328 | Msa0134560:CDS |
| AAGGCATTGCGTGCTTTAAG+AGG | 0.452954 | 1_3:+66109300 | Msa0134560:CDS |
| ATCCATGTTGTTAGTTTACT+AGG | 0.454299 | 1_3:+66108567 | Msa0134560:five_prime_UTR |
| TCTGTATTAGCCATGTAACT+TGG | 0.457832 | 1_3:-66110350 | None:intergenic |
| CGGCGAAGAATTTCGGTTGA+AGG | 0.465707 | 1_3:+66110446 | Msa0134560:CDS |
| CCCTTTGTATCCAAGTTACA+TGG | 0.469065 | 1_3:+66110340 | Msa0134560:CDS |
| ATTGCGTGCTTTAAGAGGAT+TGG | 0.475160 | 1_3:+66109305 | Msa0134560:CDS |
| TGTTCTGCATAAGATGGCCT+AGG | 0.475810 | 1_3:-66110302 | None:intergenic |
| ACTCAGATGTATGCAGGCTT+TGG | 0.478305 | 1_3:+66109383 | Msa0134560:CDS |
| GTCAATTAAGCTTGACAGAT+CGG | 0.481004 | 1_3:+66110550 | Msa0134560:CDS |
| CATTGCTGTGGCTGCTGCTA+CGG | 0.481292 | 1_3:+66108899 | Msa0134560:CDS |
| GTTTGTGTGACAGGCAAGAA+AGG | 0.494775 | 1_3:+66109281 | Msa0134560:intron |
| TGCGGCAGCTGATGCAGCAG+TGG | 0.496678 | 1_3:+66108923 | Msa0134560:CDS |
| CCTCAAAAGAGAAGAAGAGA+TGG | 0.505393 | 1_3:+66108748 | Msa0134560:CDS |
| TGGATACAAAGGGTAGTCAT+AGG | 0.508034 | 1_3:-66110330 | None:intergenic |
| GATGATCTTTGCATCCTCAC+TGG | 0.511217 | 1_3:-66110485 | None:intergenic |
| CAACATCAAGATCGTGGAGA+TGG | 0.513083 | 1_3:+66110010 | Msa0134560:CDS |
| ATAGGAAATGGACAGAGGCT+TGG | 0.519830 | 1_3:+66109983 | Msa0134560:intron |
| ATGCGTCTTTCGATCTCACT+TGG | 0.521493 | 1_3:+66109040 | Msa0134560:CDS |
| CAAAGATCATCTTCACAAGT+AGG | 0.528514 | 1_3:+66110497 | Msa0134560:CDS |
| TGATATATATCTAATTAACT+TGG | 0.529297 | 1_3:-66111065 | None:intergenic |
| TGGCTAATACAGAATCATCA+AGG | 0.530539 | 1_3:+66110360 | Msa0134560:CDS |
| TTTGTGTGAAGGATTTGTAA+TGG | 0.530862 | 1_3:+66111015 | Msa0134560:three_prime_UTR |
| GGCACTGATAAGGGGTCACT+TGG | 0.533686 | 1_3:+66109338 | Msa0134560:CDS |
| GGCAACACTCAGATGTATGC+AGG | 0.534937 | 1_3:+66109377 | Msa0134560:CDS |
| CCATGTAACTTGGATACAAA+GGG | 0.536026 | 1_3:-66110340 | None:intergenic |
| TTCAATTCCTTGGAAGCTGT+CGG | 0.542435 | 1_3:-66108801 | None:intergenic |
| AGCTACACCGACAGCTTCCA+AGG | 0.545619 | 1_3:+66108794 | Msa0134560:CDS |
| GATATAGCAGAATAACATTG+AGG | 0.548121 | 1_3:-66110245 | None:intergenic |
| TCAGTACTATATGGTTGTGA+TGG | 0.550050 | 1_3:-66108466 | None:intergenic |
| GCCATGTAACTTGGATACAA+AGG | 0.552992 | 1_3:-66110341 | None:intergenic |
| TGTGGCTGCTGCTACGGCTG+CGG | 0.553963 | 1_3:+66108905 | Msa0134560:CDS |
| TCTGTTAAGGCTGATGGAGC+TGG | 0.555014 | 1_3:-66110161 | None:intergenic |
| TTGAAGGAAGAAATGTTCCT+AGG | 0.558090 | 1_3:+66110462 | Msa0134560:CDS |
| GATGGCCTAGGGAAAGCAAA+AGG | 0.561679 | 1_3:-66110290 | None:intergenic |
| TCTAAATCACAGAAATGCCA+TGG | 0.567771 | 1_3:+66109467 | Msa0134560:CDS |
| GGTACTTGAGAGAAAGAGAT+GGG | 0.568012 | 1_3:+66108588 | Msa0134560:exon |
| AAGCTAGAGCTCGTGCTCAA+AGG | 0.569984 | 1_3:+66109415 | Msa0134560:CDS |
| ACTCAGTACCTATCTCCCTC+TGG | 0.571519 | 1_3:-66110772 | None:intergenic |
| CATTTGAGAGGCAACTGAGT+CGG | 0.582840 | 1_3:+66110426 | Msa0134560:CDS |
| GTTCTGCATAAGATGGCCTA+GGG | 0.585806 | 1_3:-66110301 | None:intergenic |
| CTGTCAAGCTTAATTGACCA+TGG | 0.596255 | 1_3:-66110545 | None:intergenic |
| TCACTCAAAGACAGCGAGTG+TGG | 0.602764 | 1_3:+66110578 | Msa0134560:CDS |
| CTCAGAACTACCAATATCCA+TGG | 0.603363 | 1_3:+66110528 | Msa0134560:CDS |
| AGGTACTTGAGAGAAAGAGA+TGG | 0.605693 | 1_3:+66108587 | Msa0134560:exon |
| AGGATCCGAATGGTGTCAGA+AGG | 0.606421 | 1_3:+66109435 | Msa0134560:CDS |
| AAAGGCCAGATTCATTTGAG+AGG | 0.608884 | 1_3:+66110414 | Msa0134560:CDS |
| CTTCTATTTAGTGTTGCACA+AGG | 0.615759 | 1_3:-66110800 | None:intergenic |
| CTTGGTGAGAAAACAAGCAA+AGG | 0.620679 | 1_3:+66109356 | Msa0134560:CDS |
| CACAAAGTGCACCAAAACAA+AGG | 0.621093 | 1_3:+66110396 | Msa0134560:CDS |
| TACTCACATCATATGCAACA+AGG | 0.625138 | 1_3:-66110643 | None:intergenic |
| TCTGGATTACATTTGTGTGA+AGG | 0.626541 | 1_3:+66111004 | Msa0134560:three_prime_UTR |
| ACTCACATCATATGCAACAA+GGG | 0.631010 | 1_3:-66110642 | None:intergenic |
| AAGTTGCAGGCACTGATAAG+GGG | 0.634301 | 1_3:+66109330 | Msa0134560:CDS |
| TTGATATTCAGAATGAGCAA+AGG | 0.635567 | 1_3:+66108868 | Msa0134560:CDS |
| GGCTAATACAGAATCATCAA+GGG | 0.638606 | 1_3:+66110361 | Msa0134560:CDS |
| GGAAGACAACATCAAGATCG+TGG | 0.662356 | 1_3:+66110004 | Msa0134560:CDS |
| TCGTGCTCAAAGGATCCGAA+TGG | 0.669902 | 1_3:+66109425 | Msa0134560:CDS |
| TACCTAGTAAACTAACAACA+TGG | 0.670118 | 1_3:-66108569 | None:intergenic |
| TGCGTATAGGAAATGGACAG+AGG | 0.674143 | 1_3:+66109978 | Msa0134560:intron |
| GAAATGTTCCTAGGCCAGTG+AGG | 0.680955 | 1_3:+66110471 | Msa0134560:CDS |
| AATTAAGCTTGACAGATCGG+CGG | 0.696688 | 1_3:+66110553 | Msa0134560:CDS |
| AAGGAATCATGTCATTGCTG+TGG | 0.710245 | 1_3:+66108887 | Msa0134560:CDS |
| TTGAGTCCAAAAGCATACAG+TGG | 0.712237 | 1_3:+66110185 | Msa0134560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAGATAATTATTAATT+AGG | - | chr1_3:66109540-66109559 | None:intergenic | 10.0% |
| !! | TTCAACAATCAAATTAAAAT+TGG | - | chr1_3:66109565-66109584 | None:intergenic | 15.0% |
| !!! | AATTTGATCATAAATTTTGT+AGG | + | chr1_3:66109664-66109683 | Msa0134560:intron | 15.0% |
| !! | TCAAGAAGAAAAATATATAT+CGG | + | chr1_3:66110709-66110728 | Msa0134560:intron | 15.0% |
| !! | TGATATATATCTAATTAACT+TGG | - | chr1_3:66111068-66111087 | None:intergenic | 15.0% |
| !! | ATTGATGTCATAAACATAAT+TGG | + | chr1_3:66109594-66109613 | Msa0134560:intron | 20.0% |
| !!! | GATACACTAAACAATTTTAT+AGG | - | chr1_3:66109906-66109925 | None:intergenic | 20.0% |
| !! | GAAAATAGATATTCCATAAA+TGG | + | chr1_3:66110104-66110123 | Msa0134560:CDS | 20.0% |
| !!! | AACAGAACTTATATTTTCTT+TGG | - | chr1_3:66110906-66110925 | None:intergenic | 20.0% |
| !! | TTTGATGTAACAGTTAGTTT+AGG | + | chr1_3:66108412-66108431 | Msa0134560:five_prime_UTR | 25.0% |
| !!! | GATTTTATTTGTAGATCTCT+TGG | - | chr1_3:66108515-66108534 | None:intergenic | 25.0% |
| !! | TCATTTTGCAACTTTCTTAT+AGG | + | chr1_3:66108533-66108552 | Msa0134560:five_prime_UTR | 25.0% |
| !!! | ACAAACCAGAATTTTTCAAA+TGG | + | chr1_3:66108690-66108709 | Msa0134560:CDS | 25.0% |
| ! | TGTCATTGAAGAAGTAATTT+CGG | - | chr1_3:66108832-66108851 | None:intergenic | 25.0% |
| !!! | CCTTTAAAATTTTAAGGACT+CGG | - | chr1_3:66109081-66109100 | None:intergenic | 25.0% |
| !!! | GTCCTTAAAATTTTAAAGGT+CGG | + | chr1_3:66109082-66109101 | Msa0134560:intron | 25.0% |
| ! | TTAAATAGTGGCGATAAATT+TGG | - | chr1_3:66109186-66109205 | None:intergenic | 25.0% |
| ! | AAATTTATCGCCACTATTTA+AGG | + | chr1_3:66109185-66109204 | Msa0134560:intron | 25.0% |
| ! | AATTTATCGCCACTATTTAA+GGG | + | chr1_3:66109186-66109205 | Msa0134560:intron | 25.0% |
| !! | CACATTTTCAATATAAAGTG+TGG | - | chr1_3:66109736-66109755 | None:intergenic | 25.0% |
| ! | TTCTAGTCATGATTAAAATG+TGG | + | chr1_3:66109950-66109969 | Msa0134560:intron | 25.0% |
| !!! | ATTTTCTTTGGAACTCTAAA+AGG | - | chr1_3:66110894-66110913 | None:intergenic | 25.0% |
| !!! | TTTTTTATGATATAGAGTGC+TGG | + | chr1_3:66110924-66110943 | Msa0134560:three_prime_UTR | 25.0% |
| !!! | TTTTTATGATATAGAGTGCT+GGG | + | chr1_3:66110925-66110944 | Msa0134560:three_prime_UTR | 25.0% |
| ! | AAGTTGCTTTCAGTACTATA+TGG | - | chr1_3:66108478-66108497 | None:intergenic | 30.0% |
| ! | ATCCATGTTGTTAGTTTACT+AGG | + | chr1_3:66108567-66108586 | Msa0134560:five_prime_UTR | 30.0% |
| TACCTAGTAAACTAACAACA+TGG | - | chr1_3:66108572-66108591 | None:intergenic | 30.0% | |
| AGATGGGAAAAAAAGGTAAA+TGG | + | chr1_3:66108604-66108623 | Msa0134560:exon | 30.0% | |
| CAAAGACAAAGAAAAAGAGA+AGG | + | chr1_3:66108656-66108675 | Msa0134560:CDS | 30.0% | |
| CTGTTCCATTTGAAAAATTC+TGG | - | chr1_3:66108698-66108717 | None:intergenic | 30.0% | |
| !!! | ATGGAGTTTTAGAAGATCAT+CGG | + | chr1_3:66108767-66108786 | Msa0134560:CDS | 30.0% |
| TTCGGAATTATTCAATTCCT+TGG | - | chr1_3:66108814-66108833 | None:intergenic | 30.0% | |
| TTGATATTCAGAATGAGCAA+AGG | + | chr1_3:66108868-66108887 | Msa0134560:CDS | 30.0% | |
| ! | CCGAGTCCTTAAAATTTTAA+AGG | + | chr1_3:66109078-66109097 | Msa0134560:intron | 30.0% |
| !!! | GACCGACCTTTAAAATTTTA+AGG | - | chr1_3:66109087-66109106 | None:intergenic | 30.0% |
| TCTGACATTGTTCACTTTAA+GGG | - | chr1_3:66109147-66109166 | None:intergenic | 30.0% | |
| ATCTGACATTGTTCACTTTA+AGG | - | chr1_3:66109148-66109167 | None:intergenic | 30.0% | |
| GTCCTTGAAATTGTATAGTA+GGG | - | chr1_3:66109238-66109257 | None:intergenic | 30.0% | |
| AGTCCTTGAAATTGTATAGT+AGG | - | chr1_3:66109239-66109258 | None:intergenic | 30.0% | |
| GCATTTCTGTGATTTAGATT+AGG | - | chr1_3:66109465-66109484 | None:intergenic | 30.0% | |
| TTGTAGGTAAAGAAAGTAAG+TGG | + | chr1_3:66109680-66109699 | Msa0134560:intron | 30.0% | |
| TTGTTTAGTGTATCCAAATG+AGG | + | chr1_3:66109912-66109931 | Msa0134560:intron | 30.0% | |
| ! | ACTTCATTTTGTTCCTCATT+TGG | - | chr1_3:66109928-66109947 | None:intergenic | 30.0% |
| ! | ATGGATTTTTGCGAATCAAA+AGG | + | chr1_3:66110029-66110048 | Msa0134560:CDS | 30.0% |
| ! | TTTTGTGTAGGAACCATTTA+TGG | - | chr1_3:66110120-66110139 | None:intergenic | 30.0% |
| ! | TTTTGGACTCAATTCTGTTA+AGG | - | chr1_3:66110177-66110196 | None:intergenic | 30.0% |
| TACTGAAACAATCCTCAAAA+TGG | - | chr1_3:66110211-66110230 | None:intergenic | 30.0% | |
| GATATAGCAGAATAACATTG+AGG | - | chr1_3:66110248-66110267 | None:intergenic | 30.0% | |
| TATTCATTGTTTGTACTGTC+TGG | + | chr1_3:66110986-66111005 | Msa0134560:three_prime_UTR | 30.0% | |
| TTTGTGTGAAGGATTTGTAA+TGG | + | chr1_3:66111015-66111034 | Msa0134560:three_prime_UTR | 30.0% | |
| TCAGTACTATATGGTTGTGA+TGG | - | chr1_3:66108469-66108488 | None:intergenic | 35.0% | |
| GAGAAAGAGATGGGAAAAAA+AGG | + | chr1_3:66108597-66108616 | Msa0134560:exon | 35.0% | |
| !! | TGGCTTAAAAACTTGTTGAC+AGG | + | chr1_3:66108624-66108643 | Msa0134560:CDS | 35.0% |
| !! | GGCTTAAAAACTTGTTGACA+GGG | + | chr1_3:66108625-66108644 | Msa0134560:CDS | 35.0% |
| CATTTGAACCAGAAGTTAAC+CGG | - | chr1_3:66108977-66108996 | None:intergenic | 35.0% | |
| GCAAATTTGAAGGACTAAAC+TGG | - | chr1_3:66109216-66109235 | None:intergenic | 35.0% | |
| GTATAGTAGGGCAAATTTGA+AGG | - | chr1_3:66109226-66109245 | None:intergenic | 35.0% | |
| TGCCCTACTATACAATTTCA+AGG | + | chr1_3:66109233-66109252 | Msa0134560:intron | 35.0% | |
| TTTGTGAATGTTTGTGTGAC+AGG | + | chr1_3:66109272-66109291 | Msa0134560:intron | 35.0% | |
| TCTAAATCACAGAAATGCCA+TGG | + | chr1_3:66109467-66109486 | Msa0134560:CDS | 35.0% | |
| ! | CAATATAAAGTGTGGTGCTA+TGG | - | chr1_3:66109728-66109747 | None:intergenic | 35.0% |
| TGTAAGCATAGTATCATGTC+TGG | + | chr1_3:66109816-66109835 | Msa0134560:intron | 35.0% | |
| ! | TGACCTATGAAGCACTAAAA+CGG | - | chr1_3:66109845-66109864 | None:intergenic | 35.0% |
| !!! | AAATGTGGTTTTGTGCGTAT+AGG | + | chr1_3:66109965-66109984 | Msa0134560:intron | 35.0% |
| ! | GCAGTTTTCTTCTTTTGTGT+AGG | - | chr1_3:66110132-66110151 | None:intergenic | 35.0% |
| GACATTTGTTCTGCATAAGA+TGG | - | chr1_3:66110311-66110330 | None:intergenic | 35.0% | |
| CCATGTAACTTGGATACAAA+GGG | - | chr1_3:66110343-66110362 | None:intergenic | 35.0% | |
| TCTGTATTAGCCATGTAACT+TGG | - | chr1_3:66110353-66110372 | None:intergenic | 35.0% | |
| TGGCTAATACAGAATCATCA+AGG | + | chr1_3:66110360-66110379 | Msa0134560:CDS | 35.0% | |
| GGCTAATACAGAATCATCAA+GGG | + | chr1_3:66110361-66110380 | Msa0134560:CDS | 35.0% | |
| !! | AATGAATCTGGCCTTTGTTT+TGG | - | chr1_3:66110410-66110429 | None:intergenic | 35.0% |
| TTGAAGGAAGAAATGTTCCT+AGG | + | chr1_3:66110462-66110481 | Msa0134560:CDS | 35.0% | |
| CAAAGATCATCTTCACAAGT+AGG | + | chr1_3:66110497-66110516 | Msa0134560:CDS | 35.0% | |
| GCTTAATTGACCATGGATAT+TGG | - | chr1_3:66110541-66110560 | None:intergenic | 35.0% | |
| GTCAATTAAGCTTGACAGAT+CGG | + | chr1_3:66110550-66110569 | Msa0134560:CDS | 35.0% | |
| ACTCACATCATATGCAACAA+GGG | - | chr1_3:66110645-66110664 | None:intergenic | 35.0% | |
| TACTCACATCATATGCAACA+AGG | - | chr1_3:66110646-66110665 | None:intergenic | 35.0% | |
| CTTCTATTTAGTGTTGCACA+AGG | - | chr1_3:66110803-66110822 | None:intergenic | 35.0% | |
| ! | CTCAATGCTTACGTTTTTGT+TGG | - | chr1_3:66110844-66110863 | None:intergenic | 35.0% |
| ! | CAACAAAAACGTAAGCATTG+AGG | + | chr1_3:66110842-66110861 | Msa0134560:three_prime_UTR | 35.0% |
| !!! | ACGTAAGCATTGAGGTTTTA+AGG | + | chr1_3:66110850-66110869 | Msa0134560:three_prime_UTR | 35.0% |
| TCTGGATTACATTTGTGTGA+AGG | + | chr1_3:66111004-66111023 | Msa0134560:three_prime_UTR | 35.0% | |
| AGGTACTTGAGAGAAAGAGA+TGG | + | chr1_3:66108587-66108606 | Msa0134560:exon | 40.0% | |
| GGTACTTGAGAGAAAGAGAT+GGG | + | chr1_3:66108588-66108607 | Msa0134560:exon | 40.0% | |
| GTTGTTGAAACAGGAGTAGT+TGG | - | chr1_3:66108726-66108745 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTGTTGTTGAAAC+AGG | - | chr1_3:66108735-66108754 | None:intergenic | 40.0% |
| ! | CCATCTCTTCTTCTCTTTTG+AGG | - | chr1_3:66108751-66108770 | None:intergenic | 40.0% |
| CCTCAAAAGAGAAGAAGAGA+TGG | + | chr1_3:66108748-66108767 | Msa0134560:CDS | 40.0% | |
| TTCAATTCCTTGGAAGCTGT+CGG | - | chr1_3:66108804-66108823 | None:intergenic | 40.0% | |
| AAGGAATCATGTCATTGCTG+TGG | + | chr1_3:66108887-66108906 | Msa0134560:CDS | 40.0% | |
| TATCGCCACTATTTAAGGGT+CGG | + | chr1_3:66109190-66109209 | Msa0134560:intron | 40.0% | |
| !! | ATTGCGTGCTTTAAGAGGAT+TGG | + | chr1_3:66109305-66109324 | Msa0134560:CDS | 40.0% |
| CTTGGTGAGAAAACAAGCAA+AGG | + | chr1_3:66109356-66109375 | Msa0134560:CDS | 40.0% | |
| !! | CCTGAACAAGTCATTTTCCA+TGG | - | chr1_3:66109487-66109506 | None:intergenic | 40.0% |
| !! | CCATGGAAAATGACTTGTTC+AGG | + | chr1_3:66109484-66109503 | Msa0134560:CDS | 40.0% |
| CTATGCTTACACATACACAC+TGG | - | chr1_3:66109807-66109826 | None:intergenic | 40.0% | |
| !! | TGTCCGTTTTAGTGCTTCAT+AGG | + | chr1_3:66109839-66109858 | Msa0134560:intron | 40.0% |
| TTTAGTGCTTCATAGGTCAC+TGG | + | chr1_3:66109846-66109865 | Msa0134560:intron | 40.0% | |
| !! | GGTTTTGTGCGTATAGGAAA+TGG | + | chr1_3:66109971-66109990 | Msa0134560:intron | 40.0% |
| CTCAATTCTGTTAAGGCTGA+TGG | - | chr1_3:66110170-66110189 | None:intergenic | 40.0% | |
| ! | TTGAGTCCAAAAGCATACAG+TGG | + | chr1_3:66110185-66110204 | Msa0134560:CDS | 40.0% |
| ! | AAATGGCCACTGTATGCTTT+TGG | - | chr1_3:66110194-66110213 | None:intergenic | 40.0% |
| ! | ATCATCCTTTTGCTTTCCCT+AGG | + | chr1_3:66110285-66110304 | Msa0134560:CDS | 40.0% |
| TGGATACAAAGGGTAGTCAT+AGG | - | chr1_3:66110333-66110352 | None:intergenic | 40.0% | |
| CCCTTTGTATCCAAGTTACA+TGG | + | chr1_3:66110340-66110359 | Msa0134560:CDS | 40.0% | |
| GCCATGTAACTTGGATACAA+AGG | - | chr1_3:66110344-66110363 | None:intergenic | 40.0% | |
| CACAAAGTGCACCAAAACAA+AGG | + | chr1_3:66110396-66110415 | Msa0134560:CDS | 40.0% | |
| AAAGGCCAGATTCATTTGAG+AGG | + | chr1_3:66110414-66110433 | Msa0134560:CDS | 40.0% | |
| AGTTGCCTCTCAAATGAATC+TGG | - | chr1_3:66110422-66110441 | None:intergenic | 40.0% | |
| CTCAGAACTACCAATATCCA+TGG | + | chr1_3:66110528-66110547 | Msa0134560:CDS | 40.0% | |
| CTGTCAAGCTTAATTGACCA+TGG | - | chr1_3:66110548-66110567 | None:intergenic | 40.0% | |
| AATTAAGCTTGACAGATCGG+CGG | + | chr1_3:66110553-66110572 | Msa0134560:CDS | 40.0% | |
| !!! | ATTGTTTTGATTGCAGCCAG+AGG | + | chr1_3:66110756-66110775 | Msa0134560:intron | 40.0% |
| !!! | TTGTTTTGATTGCAGCCAGA+GGG | + | chr1_3:66110757-66110776 | Msa0134560:intron | 40.0% |
| ATGCGTCTTTCGATCTCACT+TGG | + | chr1_3:66109040-66109059 | Msa0134560:CDS | 45.0% | |
| GTTTGTGTGACAGGCAAGAA+AGG | + | chr1_3:66109281-66109300 | Msa0134560:intron | 45.0% | |
| !! | AAGGCATTGCGTGCTTTAAG+AGG | + | chr1_3:66109300-66109319 | Msa0134560:CDS | 45.0% |
| ! | AAGAGGATTGGTGAAGTTGC+AGG | + | chr1_3:66109317-66109336 | Msa0134560:CDS | 45.0% |
| !! | TGAAGTTGCAGGCACTGATA+AGG | + | chr1_3:66109328-66109347 | Msa0134560:CDS | 45.0% |
| !! | GAAGTTGCAGGCACTGATAA+GGG | + | chr1_3:66109329-66109348 | Msa0134560:CDS | 45.0% |
| !! | AAGTTGCAGGCACTGATAAG+GGG | + | chr1_3:66109330-66109349 | Msa0134560:CDS | 45.0% |
| ACTCAGATGTATGCAGGCTT+TGG | + | chr1_3:66109383-66109402 | Msa0134560:CDS | 45.0% | |
| GCTTTCCTTCTGACACCATT+CGG | - | chr1_3:66109443-66109462 | None:intergenic | 45.0% | |
| !! | ACTGTAACTTGCTGGATGCT+CGG | - | chr1_3:66109760-66109779 | None:intergenic | 45.0% |
| ! | TCTGAGACACTGTAACTTGC+TGG | - | chr1_3:66109768-66109787 | None:intergenic | 45.0% |
| TGCGTATAGGAAATGGACAG+AGG | + | chr1_3:66109978-66109997 | Msa0134560:intron | 45.0% | |
| ATAGGAAATGGACAGAGGCT+TGG | + | chr1_3:66109983-66110002 | Msa0134560:intron | 45.0% | |
| GGAAGACAACATCAAGATCG+TGG | + | chr1_3:66110004-66110023 | Msa0134560:CDS | 45.0% | |
| CAACATCAAGATCGTGGAGA+TGG | + | chr1_3:66110010-66110029 | Msa0134560:CDS | 45.0% | |
| !! | AGCATACAGTGGCCATTTTG+AGG | + | chr1_3:66110196-66110215 | Msa0134560:CDS | 45.0% |
| GTTCTGCATAAGATGGCCTA+GGG | - | chr1_3:66110304-66110323 | None:intergenic | 45.0% | |
| TGTTCTGCATAAGATGGCCT+AGG | - | chr1_3:66110305-66110324 | None:intergenic | 45.0% | |
| CATTTGAGAGGCAACTGAGT+CGG | + | chr1_3:66110426-66110445 | Msa0134560:CDS | 45.0% | |
| ACTGAGTCGGCGAAGAATTT+CGG | + | chr1_3:66110439-66110458 | Msa0134560:CDS | 45.0% | |
| GATGATCTTTGCATCCTCAC+TGG | - | chr1_3:66110488-66110507 | None:intergenic | 45.0% | |
| GCTGTGATCCGGTTAACTTC+TGG | + | chr1_3:66108966-66108985 | Msa0134560:CDS | 50.0% | |
| ACTGGCCGACCCTTAAATAG+TGG | - | chr1_3:66109198-66109217 | None:intergenic | 50.0% | |
| GGCAACACTCAGATGTATGC+AGG | + | chr1_3:66109377-66109396 | Msa0134560:CDS | 50.0% | |
| AAGCTAGAGCTCGTGCTCAA+AGG | + | chr1_3:66109415-66109434 | Msa0134560:CDS | 50.0% | |
| TCGTGCTCAAAGGATCCGAA+TGG | + | chr1_3:66109425-66109444 | Msa0134560:CDS | 50.0% | |
| ! | AGGATCCGAATGGTGTCAGA+AGG | + | chr1_3:66109435-66109454 | Msa0134560:CDS | 50.0% |
| TCTGTTAAGGCTGATGGAGC+TGG | - | chr1_3:66110164-66110183 | None:intergenic | 50.0% | |
| GATGGCCTAGGGAAAGCAAA+AGG | - | chr1_3:66110293-66110312 | None:intergenic | 50.0% | |
| CGGCGAAGAATTTCGGTTGA+AGG | + | chr1_3:66110446-66110465 | Msa0134560:CDS | 50.0% | |
| GAAATGTTCCTAGGCCAGTG+AGG | + | chr1_3:66110471-66110490 | Msa0134560:CDS | 50.0% | |
| TCACTCAAAGACAGCGAGTG+TGG | + | chr1_3:66110578-66110597 | Msa0134560:CDS | 50.0% | |
| ACTCAGTACCTATCTCCCTC+TGG | - | chr1_3:66110775-66110794 | None:intergenic | 50.0% | |
| AGCTACACCGACAGCTTCCA+AGG | + | chr1_3:66108794-66108813 | Msa0134560:CDS | 55.0% | |
| CATTGCTGTGGCTGCTGCTA+CGG | + | chr1_3:66108899-66108918 | Msa0134560:CDS | 55.0% | |
| AAGCTGCAGCTGCTGTGATC+CGG | + | chr1_3:66108955-66108974 | Msa0134560:CDS | 55.0% | |
| !! | GGCACTGATAAGGGGTCACT+TGG | + | chr1_3:66109338-66109357 | Msa0134560:CDS | 55.0% |
| !! | ACACTGGTGTCGTGTCGTGT+CGG | - | chr1_3:66109791-66109810 | None:intergenic | 55.0% |
| ! | CTTTGCATCCTCACTGGCCT+AGG | - | chr1_3:66110482-66110501 | None:intergenic | 55.0% |
| GATTGCAGCCAGAGGGAGAT+AGG | + | chr1_3:66110764-66110783 | Msa0134560:intron | 55.0% | |
| TGTGGCTGCTGCTACGGCTG+CGG | + | chr1_3:66108905-66108924 | Msa0134560:CDS | 65.0% | |
| TGCGGCAGCTGATGCAGCAG+TGG | + | chr1_3:66108923-66108942 | Msa0134560:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66108404 | 66111094 | 66108404 | ID=Msa0134560;Name=Msa0134560 |
| chr1_3 | mRNA | 66108404 | 66111094 | 66108404 | ID=Msa0134560-mRNA-1;Parent=Msa0134560;Name=Msa0134560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=202|1|1|1|1|1|4|302|457 |
| chr1_3 | exon | 66108404 | 66109061 | 66108404 | ID=Msa0134560-mRNA-1:exon:22523;Parent=Msa0134560-mRNA-1 |
| chr1_3 | exon | 66109294 | 66109518 | 66109294 | ID=Msa0134560-mRNA-1:exon:22524;Parent=Msa0134560-mRNA-1 |
| chr1_3 | exon | 66109987 | 66110658 | 66109987 | ID=Msa0134560-mRNA-1:exon:22525;Parent=Msa0134560-mRNA-1 |
| chr1_3 | exon | 66110772 | 66111094 | 66110772 | ID=Msa0134560-mRNA-1:exon:22526;Parent=Msa0134560-mRNA-1 |
| chr1_3 | five_prime_UTR | 66108404 | 66108605 | 66108404 | ID=Msa0134560-mRNA-1:five_prime_utr;Parent=Msa0134560-mRNA-1 |
| chr1_3 | CDS | 66108606 | 66109061 | 66108606 | ID=Msa0134560-mRNA-1:cds;Parent=Msa0134560-mRNA-1 |
| chr1_3 | CDS | 66109294 | 66109518 | 66109294 | ID=Msa0134560-mRNA-1:cds;Parent=Msa0134560-mRNA-1 |
| chr1_3 | CDS | 66109987 | 66110658 | 66109987 | ID=Msa0134560-mRNA-1:cds;Parent=Msa0134560-mRNA-1 |
| chr1_3 | CDS | 66110772 | 66110792 | 66110772 | ID=Msa0134560-mRNA-1:cds;Parent=Msa0134560-mRNA-1 |
| chr1_3 | three_prime_UTR | 66110793 | 66111094 | 66110793 | ID=Msa0134560-mRNA-1:three_prime_utr;Parent=Msa0134560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
