Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469780 | XP_003602030.1 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 1.94e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469780 | sp|Q9STN5|Y4833_ARATH | 61.654 | 133 | 46 | 2 | 31 | 163 | 33 | 160 | 1.07e-50 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469780 | G7J4F8 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 9.29e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0469780 | Msa0515390 | 0.896545 | 3.327222e-76 | -8.615850e-47 |
| Msa0469780 | Msa0515410 | 0.878907 | 1.920551e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469780 | MtrunA17_Chr3g0124671 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 1.79e-109 | 309 |
| Msa0469780 | MtrunA17_Chr8g0347721 | 51.852 | 135 | 50 | 4 | 30 | 164 | 2 | 121 | 2.81e-33 | 114 |
| Msa0469780 | MtrunA17_Chr8g0384901 | 45.985 | 137 | 58 | 6 | 32 | 162 | 24 | 150 | 8.17e-25 | 94.0 |
| Msa0469780 | MtrunA17_Chr1g0159961 | 66.176 | 68 | 15 | 3 | 1 | 67 | 1 | 61 | 4.96e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469780 | AT4G08330.1 | 61.654 | 133 | 46 | 2 | 31 | 163 | 33 | 160 | 1.09e-51 | 163 |
| Msa0469780 | AT4G08330.2 | 58.824 | 119 | 44 | 2 | 45 | 163 | 36 | 149 | 6.02e-42 | 138 |
Find 43 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCGATAGATTCAAAATA+TGG | 0.268899 | 3_3:+71761993 | Msa0469780:CDS |
| TCCCAACATCTTTGTTGCTT+TGG | 0.288213 | 3_3:-71762460 | None:intergenic |
| CGCAAGTGTTGCAACCATAT+TGG | 0.297071 | 3_3:+71762155 | Msa0469780:CDS |
| ATATCCCATTTCCACATTCT+TGG | 0.326262 | 3_3:-71762319 | None:intergenic |
| CCTCTTCTTCTACTACTTCT+CGG | 0.327764 | 3_3:+71761007 | Msa0469780:CDS |
| CATTGTAAGCATAACCAATA+TGG | 0.355065 | 3_3:-71762169 | None:intergenic |
| TCTTCCCAAGAATGTGGAAA+TGG | 0.359240 | 3_3:+71762314 | Msa0469780:CDS |
| TATCCCATTTCCACATTCTT+GGG | 0.383630 | 3_3:-71762318 | None:intergenic |
| ATGCACTATCACACAAATAT+AGG | 0.394685 | 3_3:-71762397 | None:intergenic |
| AATCTATCGATGATGTGTTT+CGG | 0.412775 | 3_3:-71761983 | None:intergenic |
| ACCAAAGCAACAAAGATGTT+GGG | 0.418636 | 3_3:+71762459 | Msa0469780:three_prime_UTR |
| CCACATTCTTGGGAAGATGA+TGG | 0.443507 | 3_3:-71762308 | None:intergenic |
| TACCAAAGCAACAAAGATGT+TGG | 0.448057 | 3_3:+71762458 | Msa0469780:three_prime_UTR |
| CGAGACGGTGCTTCAGTTGA+AGG | 0.452110 | 3_3:-71762251 | None:intergenic |
| CTTCCCAAGAATGTGGAAAT+GGG | 0.463725 | 3_3:+71762315 | Msa0469780:CDS |
| TCGTCAACATTGATGATAGC+AGG | 0.465053 | 3_3:+71762045 | Msa0469780:CDS |
| AAGAAGAGGAGGATGACAAA+GGG | 0.470495 | 3_3:-71760993 | None:intergenic |
| TTTATTCTAGTATCATCAAA+TGG | 0.485734 | 3_3:+71762215 | Msa0469780:CDS |
| GGTTTGATGAGGATAGGTTA+AGG | 0.497317 | 3_3:-71761962 | None:intergenic |
| GTCAAAGGGATGTCCGCTAC+AGG | 0.503245 | 3_3:+71761037 | Msa0469780:CDS |
| GAAGAAGAGGAGGATGACAA+AGG | 0.510515 | 3_3:-71760994 | None:intergenic |
| TGATGATAGCAGGTTTGCAC+AGG | 0.514951 | 3_3:+71762055 | Msa0469780:CDS |
| TAATACTCACCAGCAACAAA+AGG | 0.521848 | 3_3:+71762425 | Msa0469780:three_prime_UTR |
| TTCTCGGACTCGTAGTCAAA+GGG | 0.522748 | 3_3:+71761023 | Msa0469780:CDS |
| CCGAGAAGTAGTAGAAGAAG+AGG | 0.529630 | 3_3:-71761007 | None:intergenic |
| GAAAATTTACATACATATTG+TGG | 0.543436 | 3_3:+71762354 | Msa0469780:exon |
| CACGTAAATTATTATAGAGA+AGG | 0.547186 | 3_3:-71760877 | None:intergenic |
| AGAAGTAGTAGAAGAAGAGG+AGG | 0.549787 | 3_3:-71761004 | None:intergenic |
| TGGAAATGGGATATCTGTCT+TGG | 0.550576 | 3_3:+71762328 | Msa0469780:CDS |
| CTTCTCGGACTCGTAGTCAA+AGG | 0.553294 | 3_3:+71761022 | Msa0469780:CDS |
| CATATTGGTTATGCTTACAA+TGG | 0.558093 | 3_3:+71762170 | Msa0469780:CDS |
| GGTGCTTCAGTTGAAGGAGA+TGG | 0.568432 | 3_3:-71762245 | None:intergenic |
| TGTTTCGGTTTGATGAGGAT+AGG | 0.584347 | 3_3:-71761968 | None:intergenic |
| CCATCATCTTCCCAAGAATG+TGG | 0.600174 | 3_3:+71762308 | Msa0469780:CDS |
| AAATTATTATAGAGAAGGGA+GGG | 0.605540 | 3_3:-71760872 | None:intergenic |
| TTGGGAAGATGATGGCTGCA+AGG | 0.606294 | 3_3:-71762300 | None:intergenic |
| ACGTAAATTATTATAGAGAA+GGG | 0.611259 | 3_3:-71760876 | None:intergenic |
| TGATGTGTTTCGGTTTGATG+AGG | 0.619348 | 3_3:-71761973 | None:intergenic |
| TAAATTATTATAGAGAAGGG+AGG | 0.622746 | 3_3:-71760873 | None:intergenic |
| GATGATACTAGAATAAATGA+TGG | 0.622976 | 3_3:-71762209 | None:intergenic |
| AGAGAGTGGTGAACCTGTAG+CGG | 0.624601 | 3_3:-71761050 | None:intergenic |
| ATGTTGTATTTCACACGAGA+CGG | 0.639297 | 3_3:-71762266 | None:intergenic |
| TATGGAAAATCAATAAAACG+AGG | 0.753759 | 3_3:+71762011 | Msa0469780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAGTTTAAGAAAATTA+GGG | - | chr3_3:71761382-71761401 | None:intergenic | 10.0% |
| !! | TAATAAGTTTAAGAAAATTA+GGG | - | chr3_3:71761382-71761401 | None:intergenic | 10.0% |
| !! | TGTATAAACATAAATAGAAA+TGG | - | chr3_3:71761093-71761112 | None:intergenic | 15.0% |
| !! | CTAATAAGTTTAAGAAAATT+AGG | - | chr3_3:71761383-71761402 | None:intergenic | 15.0% |
| !!! | AGAATTTTAAATGTATGATA+AGG | - | chr3_3:71761745-71761764 | None:intergenic | 15.0% |
| !!! | TACATTTAAAATTCTTGTTT+TGG | + | chr3_3:71761750-71761769 | Msa0469780:intron | 15.0% |
| !! | TGTATAAACATAAATAGAAA+TGG | - | chr3_3:71761093-71761112 | None:intergenic | 15.0% |
| !! | CTAATAAGTTTAAGAAAATT+AGG | - | chr3_3:71761383-71761402 | None:intergenic | 15.0% |
| !!! | AGAATTTTAAATGTATGATA+AGG | - | chr3_3:71761745-71761764 | None:intergenic | 15.0% |
| !!! | TACATTTAAAATTCTTGTTT+TGG | + | chr3_3:71761750-71761769 | Msa0469780:intron | 15.0% |
| !! | ACGTAAATTATTATAGAGAA+GGG | - | chr3_3:71760879-71760898 | None:intergenic | 20.0% |
| !!! | TTCAATAATTAATTTTGCCT+TGG | + | chr3_3:71761126-71761145 | Msa0469780:intron | 20.0% |
| !!! | GATTTTTTATACTTTCATAG+AGG | + | chr3_3:71761231-71761250 | Msa0469780:intron | 20.0% |
| !!! | ATTGCAATAATTTTGACAAT+AGG | - | chr3_3:71761301-71761320 | None:intergenic | 20.0% |
| !!! | AAACATTTTTCATTTTGCTT+AGG | + | chr3_3:71761531-71761550 | Msa0469780:intron | 20.0% |
| !! | CTAGAAATTAATTGAAATGA+AGG | + | chr3_3:71761675-71761694 | Msa0469780:intron | 20.0% |
| !! | AATTAATTGAAATGAAGGAA+AGG | + | chr3_3:71761680-71761699 | Msa0469780:intron | 20.0% |
| !! | ATTAATTGAAATGAAGGAAA+GGG | + | chr3_3:71761681-71761700 | Msa0469780:intron | 20.0% |
| !! | TGAAATATGTAAATCATGAT+CGG | - | chr3_3:71761891-71761910 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTAAGAATTTGT+GGG | + | chr3_3:71762100-71762119 | Msa0469780:CDS | 20.0% |
| !! | TTTATTCTAGTATCATCAAA+TGG | + | chr3_3:71762215-71762234 | Msa0469780:CDS | 20.0% |
| !! | GAAAATTTACATACATATTG+TGG | + | chr3_3:71762354-71762373 | Msa0469780:exon | 20.0% |
| !! | ACGTAAATTATTATAGAGAA+GGG | - | chr3_3:71760879-71760898 | None:intergenic | 20.0% |
| !!! | TTCAATAATTAATTTTGCCT+TGG | + | chr3_3:71761126-71761145 | Msa0469780:intron | 20.0% |
| !!! | GATTTTTTATACTTTCATAG+AGG | + | chr3_3:71761231-71761250 | Msa0469780:intron | 20.0% |
| !!! | ATTGCAATAATTTTGACAAT+AGG | - | chr3_3:71761301-71761320 | None:intergenic | 20.0% |
| !!! | AAACATTTTTCATTTTGCTT+AGG | + | chr3_3:71761531-71761550 | Msa0469780:intron | 20.0% |
| !! | CTAGAAATTAATTGAAATGA+AGG | + | chr3_3:71761675-71761694 | Msa0469780:intron | 20.0% |
| !! | AATTAATTGAAATGAAGGAA+AGG | + | chr3_3:71761680-71761699 | Msa0469780:intron | 20.0% |
| !! | ATTAATTGAAATGAAGGAAA+GGG | + | chr3_3:71761681-71761700 | Msa0469780:intron | 20.0% |
| !! | TGAAATATGTAAATCATGAT+CGG | - | chr3_3:71761891-71761910 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTAAGAATTTGT+GGG | + | chr3_3:71762100-71762119 | Msa0469780:CDS | 20.0% |
| !! | TTTATTCTAGTATCATCAAA+TGG | + | chr3_3:71762215-71762234 | Msa0469780:CDS | 20.0% |
| !! | GAAAATTTACATACATATTG+TGG | + | chr3_3:71762354-71762373 | Msa0469780:exon | 20.0% |
| ! | AAATTATTATAGAGAAGGGA+GGG | - | chr3_3:71760875-71760894 | None:intergenic | 25.0% |
| ! | TAAATTATTATAGAGAAGGG+AGG | - | chr3_3:71760876-71760895 | None:intergenic | 25.0% |
| ! | CACGTAAATTATTATAGAGA+AGG | - | chr3_3:71760880-71760899 | None:intergenic | 25.0% |
| ! | TTCTCTTCAATCACAAAAAA+TGG | + | chr3_3:71760930-71760949 | Msa0469780:exon | 25.0% |
| ! | ACTTACATGATTAATTTCCA+AGG | - | chr3_3:71761146-71761165 | None:intergenic | 25.0% |
| ! | GAAAACTACTGTTTGTAAAT+AGG | + | chr3_3:71761174-71761193 | Msa0469780:intron | 25.0% |
| ! | ATAATCATTTAATCCACTCA+AGG | - | chr3_3:71761594-71761613 | None:intergenic | 25.0% |
| ! | GGATTAAATGATTATTTGTC+CGG | + | chr3_3:71761599-71761618 | Msa0469780:intron | 25.0% |
| ! | TTAAATGTATGATAAGGCTA+TGG | - | chr3_3:71761739-71761758 | None:intergenic | 25.0% |
| ! | GAAATACTAGAAAATCCATT+TGG | - | chr3_3:71761806-71761825 | None:intergenic | 25.0% |
| ! | TCATCGATAGATTCAAAATA+TGG | + | chr3_3:71761993-71762012 | Msa0469780:CDS | 25.0% |
| ! | TATGGAAAATCAATAAAACG+AGG | + | chr3_3:71762011-71762030 | Msa0469780:CDS | 25.0% |
| ! | CACAAATTCTTAGAAAAATG+AGG | - | chr3_3:71762101-71762120 | None:intergenic | 25.0% |
| !!! | CTCATTTTTCTAAGAATTTG+TGG | + | chr3_3:71762099-71762118 | Msa0469780:CDS | 25.0% |
| !!! | CATTTTTCTAAGAATTTGTG+GGG | + | chr3_3:71762101-71762120 | Msa0469780:CDS | 25.0% |
| ! | GATGATACTAGAATAAATGA+TGG | - | chr3_3:71762212-71762231 | None:intergenic | 25.0% |
| ! | AAATTATTATAGAGAAGGGA+GGG | - | chr3_3:71760875-71760894 | None:intergenic | 25.0% |
| ! | TAAATTATTATAGAGAAGGG+AGG | - | chr3_3:71760876-71760895 | None:intergenic | 25.0% |
| ! | CACGTAAATTATTATAGAGA+AGG | - | chr3_3:71760880-71760899 | None:intergenic | 25.0% |
| ! | TTCTCTTCAATCACAAAAAA+TGG | + | chr3_3:71760930-71760949 | Msa0469780:exon | 25.0% |
| ! | ACTTACATGATTAATTTCCA+AGG | - | chr3_3:71761146-71761165 | None:intergenic | 25.0% |
| ! | GAAAACTACTGTTTGTAAAT+AGG | + | chr3_3:71761174-71761193 | Msa0469780:intron | 25.0% |
| ! | ATAATCATTTAATCCACTCA+AGG | - | chr3_3:71761594-71761613 | None:intergenic | 25.0% |
| ! | GGATTAAATGATTATTTGTC+CGG | + | chr3_3:71761599-71761618 | Msa0469780:intron | 25.0% |
| ! | TTAAATGTATGATAAGGCTA+TGG | - | chr3_3:71761739-71761758 | None:intergenic | 25.0% |
| ! | GAAATACTAGAAAATCCATT+TGG | - | chr3_3:71761806-71761825 | None:intergenic | 25.0% |
| ! | TCATCGATAGATTCAAAATA+TGG | + | chr3_3:71761993-71762012 | Msa0469780:CDS | 25.0% |
| ! | TATGGAAAATCAATAAAACG+AGG | + | chr3_3:71762011-71762030 | Msa0469780:CDS | 25.0% |
| ! | CACAAATTCTTAGAAAAATG+AGG | - | chr3_3:71762101-71762120 | None:intergenic | 25.0% |
| !!! | CTCATTTTTCTAAGAATTTG+TGG | + | chr3_3:71762099-71762118 | Msa0469780:CDS | 25.0% |
| !!! | CATTTTTCTAAGAATTTGTG+GGG | + | chr3_3:71762101-71762120 | Msa0469780:CDS | 25.0% |
| ! | GATGATACTAGAATAAATGA+TGG | - | chr3_3:71762212-71762231 | None:intergenic | 25.0% |
| ! | AACTTTTGATCTAACTGACT+TGG | + | chr3_3:71761197-71761216 | Msa0469780:intron | 30.0% |
| !! | TCTTATTTCTATCTCTCTCA+AGG | + | chr3_3:71761482-71761501 | Msa0469780:intron | 30.0% |
| TCTAAATCATCATGAACTAC+CGG | - | chr3_3:71761621-71761640 | None:intergenic | 30.0% | |
| CTGGAGAATGATATATCTAA+GGG | + | chr3_3:71761650-71761669 | Msa0469780:intron | 30.0% | |
| CATTGTCACAAACATTGAAA+AGG | + | chr3_3:71761711-71761730 | Msa0469780:intron | 30.0% | |
| ! | TCTCATTTTCTGTTTCCAAA+TGG | + | chr3_3:71761788-71761807 | Msa0469780:intron | 30.0% |
| AATATGTAAATCATGATCGG+AGG | - | chr3_3:71761888-71761907 | None:intergenic | 30.0% | |
| AATCTATCGATGATGTGTTT+CGG | - | chr3_3:71761986-71762005 | None:intergenic | 30.0% | |
| CATTGTAAGCATAACCAATA+TGG | - | chr3_3:71762172-71762191 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATGCTTACAA+TGG | + | chr3_3:71762170-71762189 | Msa0469780:CDS | 30.0% |
| ATGCACTATCACACAAATAT+AGG | - | chr3_3:71762400-71762419 | None:intergenic | 30.0% | |
| ! | AACTTTTGATCTAACTGACT+TGG | + | chr3_3:71761197-71761216 | Msa0469780:intron | 30.0% |
| !! | TCTTATTTCTATCTCTCTCA+AGG | + | chr3_3:71761482-71761501 | Msa0469780:intron | 30.0% |
| TCTAAATCATCATGAACTAC+CGG | - | chr3_3:71761621-71761640 | None:intergenic | 30.0% | |
| CTGGAGAATGATATATCTAA+GGG | + | chr3_3:71761650-71761669 | Msa0469780:intron | 30.0% | |
| CATTGTCACAAACATTGAAA+AGG | + | chr3_3:71761711-71761730 | Msa0469780:intron | 30.0% | |
| ! | TCTCATTTTCTGTTTCCAAA+TGG | + | chr3_3:71761788-71761807 | Msa0469780:intron | 30.0% |
| AATATGTAAATCATGATCGG+AGG | - | chr3_3:71761888-71761907 | None:intergenic | 30.0% | |
| AATCTATCGATGATGTGTTT+CGG | - | chr3_3:71761986-71762005 | None:intergenic | 30.0% | |
| CATTGTAAGCATAACCAATA+TGG | - | chr3_3:71762172-71762191 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATGCTTACAA+TGG | + | chr3_3:71762170-71762189 | Msa0469780:CDS | 30.0% |
| ATGCACTATCACACAAATAT+AGG | - | chr3_3:71762400-71762419 | None:intergenic | 30.0% | |
| TTGCAATGAGTAGTACTAGT+TGG | + | chr3_3:71761314-71761333 | Msa0469780:intron | 35.0% | |
| !! | AGAGAAAATCAAGTGTTGGA+TGG | - | chr3_3:71761410-71761429 | None:intergenic | 35.0% |
| GAAGAGAGAAAATCAAGTGT+TGG | - | chr3_3:71761414-71761433 | None:intergenic | 35.0% | |
| !! | TGATAAGTTGATGATGTGAC+AGG | - | chr3_3:71761436-71761455 | None:intergenic | 35.0% |
| ATACACCTATTGGAATGCAT+AGG | + | chr3_3:71761508-71761527 | Msa0469780:intron | 35.0% | |
| TGTTTCCTATGCATTCCAAT+AGG | - | chr3_3:71761516-71761535 | None:intergenic | 35.0% | |
| CCTTAGATATATCATTCTCC+AGG | - | chr3_3:71761652-71761671 | None:intergenic | 35.0% | |
| CCTGGAGAATGATATATCTA+AGG | + | chr3_3:71761649-71761668 | Msa0469780:intron | 35.0% | |
| AAATCATGATCGGAGGAATT+AGG | - | chr3_3:71761881-71761900 | None:intergenic | 35.0% | |
| !!! | TACTGTGTTTTTTACAGCTG+CGG | + | chr3_3:71761924-71761943 | Msa0469780:intron | 35.0% |
| ATGTTGTATTTCACACGAGA+CGG | - | chr3_3:71762269-71762288 | None:intergenic | 35.0% | |
| TATCCCATTTCCACATTCTT+GGG | - | chr3_3:71762321-71762340 | None:intergenic | 35.0% | |
| ATATCCCATTTCCACATTCT+TGG | - | chr3_3:71762322-71762341 | None:intergenic | 35.0% | |
| TAATACTCACCAGCAACAAA+AGG | + | chr3_3:71762425-71762444 | Msa0469780:three_prime_UTR | 35.0% | |
| ! | AAGAATACACCTTTTGTTGC+TGG | - | chr3_3:71762437-71762456 | None:intergenic | 35.0% |
| TACCAAAGCAACAAAGATGT+TGG | + | chr3_3:71762458-71762477 | Msa0469780:three_prime_UTR | 35.0% | |
| ACCAAAGCAACAAAGATGTT+GGG | + | chr3_3:71762459-71762478 | Msa0469780:three_prime_UTR | 35.0% | |
| TTGCAATGAGTAGTACTAGT+TGG | + | chr3_3:71761314-71761333 | Msa0469780:intron | 35.0% | |
| !! | AGAGAAAATCAAGTGTTGGA+TGG | - | chr3_3:71761410-71761429 | None:intergenic | 35.0% |
| GAAGAGAGAAAATCAAGTGT+TGG | - | chr3_3:71761414-71761433 | None:intergenic | 35.0% | |
| !! | TGATAAGTTGATGATGTGAC+AGG | - | chr3_3:71761436-71761455 | None:intergenic | 35.0% |
| ATACACCTATTGGAATGCAT+AGG | + | chr3_3:71761508-71761527 | Msa0469780:intron | 35.0% | |
| TGTTTCCTATGCATTCCAAT+AGG | - | chr3_3:71761516-71761535 | None:intergenic | 35.0% | |
| CCTTAGATATATCATTCTCC+AGG | - | chr3_3:71761652-71761671 | None:intergenic | 35.0% | |
| CCTGGAGAATGATATATCTA+AGG | + | chr3_3:71761649-71761668 | Msa0469780:intron | 35.0% | |
| AAATCATGATCGGAGGAATT+AGG | - | chr3_3:71761881-71761900 | None:intergenic | 35.0% | |
| !!! | TACTGTGTTTTTTACAGCTG+CGG | + | chr3_3:71761924-71761943 | Msa0469780:intron | 35.0% |
| ATGTTGTATTTCACACGAGA+CGG | - | chr3_3:71762269-71762288 | None:intergenic | 35.0% | |
| TATCCCATTTCCACATTCTT+GGG | - | chr3_3:71762321-71762340 | None:intergenic | 35.0% | |
| ATATCCCATTTCCACATTCT+TGG | - | chr3_3:71762322-71762341 | None:intergenic | 35.0% | |
| TAATACTCACCAGCAACAAA+AGG | + | chr3_3:71762425-71762444 | Msa0469780:three_prime_UTR | 35.0% | |
| ! | AAGAATACACCTTTTGTTGC+TGG | - | chr3_3:71762437-71762456 | None:intergenic | 35.0% |
| TACCAAAGCAACAAAGATGT+TGG | + | chr3_3:71762458-71762477 | Msa0469780:three_prime_UTR | 35.0% | |
| ACCAAAGCAACAAAGATGTT+GGG | + | chr3_3:71762459-71762478 | Msa0469780:three_prime_UTR | 35.0% | |
| AAGAAGAGGAGGATGACAAA+GGG | - | chr3_3:71760996-71761015 | None:intergenic | 40.0% | |
| AGAAGTAGTAGAAGAAGAGG+AGG | - | chr3_3:71761007-71761026 | None:intergenic | 40.0% | |
| CCTCTTCTTCTACTACTTCT+CGG | + | chr3_3:71761007-71761026 | Msa0469780:CDS | 40.0% | |
| TTTGCAACCAACAAAGAGAG+TGG | - | chr3_3:71761067-71761086 | None:intergenic | 40.0% | |
| CTCAAGGTGTATACACCTAT+TGG | + | chr3_3:71761498-71761517 | Msa0469780:intron | 40.0% | |
| TGCTTAGGTTTCATTCTCAG+AGG | + | chr3_3:71761546-71761565 | Msa0469780:intron | 40.0% | |
| GCTTAGGTTTCATTCTCAGA+GGG | + | chr3_3:71761547-71761566 | Msa0469780:intron | 40.0% | |
| !! | CAGTAAAAAAGCACCTTGAG+TGG | + | chr3_3:71761578-71761597 | Msa0469780:intron | 40.0% |
| ATGATTTAGATGCAAGAGCC+TGG | + | chr3_3:71761631-71761650 | Msa0469780:intron | 40.0% | |
| GGTTTGATGAGGATAGGTTA+AGG | - | chr3_3:71761965-71761984 | None:intergenic | 40.0% | |
| ! | TGTTTCGGTTTGATGAGGAT+AGG | - | chr3_3:71761971-71761990 | None:intergenic | 40.0% |
| ! | TGATGTGTTTCGGTTTGATG+AGG | - | chr3_3:71761976-71761995 | None:intergenic | 40.0% |
| ! | TCGTCAACATTGATGATAGC+AGG | + | chr3_3:71762045-71762064 | Msa0469780:CDS | 40.0% |
| TCTTCCCAAGAATGTGGAAA+TGG | + | chr3_3:71762314-71762333 | Msa0469780:CDS | 40.0% | |
| CTTCCCAAGAATGTGGAAAT+GGG | + | chr3_3:71762315-71762334 | Msa0469780:CDS | 40.0% | |
| TGGAAATGGGATATCTGTCT+TGG | + | chr3_3:71762328-71762347 | Msa0469780:CDS | 40.0% | |
| ! | TCCCAACATCTTTGTTGCTT+TGG | - | chr3_3:71762463-71762482 | None:intergenic | 40.0% |
| AAGAAGAGGAGGATGACAAA+GGG | - | chr3_3:71760996-71761015 | None:intergenic | 40.0% | |
| AGAAGTAGTAGAAGAAGAGG+AGG | - | chr3_3:71761007-71761026 | None:intergenic | 40.0% | |
| CCTCTTCTTCTACTACTTCT+CGG | + | chr3_3:71761007-71761026 | Msa0469780:CDS | 40.0% | |
| TTTGCAACCAACAAAGAGAG+TGG | - | chr3_3:71761067-71761086 | None:intergenic | 40.0% | |
| CTCAAGGTGTATACACCTAT+TGG | + | chr3_3:71761498-71761517 | Msa0469780:intron | 40.0% | |
| TGCTTAGGTTTCATTCTCAG+AGG | + | chr3_3:71761546-71761565 | Msa0469780:intron | 40.0% | |
| GCTTAGGTTTCATTCTCAGA+GGG | + | chr3_3:71761547-71761566 | Msa0469780:intron | 40.0% | |
| !! | CAGTAAAAAAGCACCTTGAG+TGG | + | chr3_3:71761578-71761597 | Msa0469780:intron | 40.0% |
| ATGATTTAGATGCAAGAGCC+TGG | + | chr3_3:71761631-71761650 | Msa0469780:intron | 40.0% | |
| GGTTTGATGAGGATAGGTTA+AGG | - | chr3_3:71761965-71761984 | None:intergenic | 40.0% | |
| ! | TGTTTCGGTTTGATGAGGAT+AGG | - | chr3_3:71761971-71761990 | None:intergenic | 40.0% |
| ! | TGATGTGTTTCGGTTTGATG+AGG | - | chr3_3:71761976-71761995 | None:intergenic | 40.0% |
| ! | TCGTCAACATTGATGATAGC+AGG | + | chr3_3:71762045-71762064 | Msa0469780:CDS | 40.0% |
| TCTTCCCAAGAATGTGGAAA+TGG | + | chr3_3:71762314-71762333 | Msa0469780:CDS | 40.0% | |
| CTTCCCAAGAATGTGGAAAT+GGG | + | chr3_3:71762315-71762334 | Msa0469780:CDS | 40.0% | |
| TGGAAATGGGATATCTGTCT+TGG | + | chr3_3:71762328-71762347 | Msa0469780:CDS | 40.0% | |
| ! | TCCCAACATCTTTGTTGCTT+TGG | - | chr3_3:71762463-71762482 | None:intergenic | 40.0% |
| GAAGAAGAGGAGGATGACAA+AGG | - | chr3_3:71760997-71761016 | None:intergenic | 45.0% | |
| CCGAGAAGTAGTAGAAGAAG+AGG | - | chr3_3:71761010-71761029 | None:intergenic | 45.0% | |
| TTCTCGGACTCGTAGTCAAA+GGG | + | chr3_3:71761023-71761042 | Msa0469780:CDS | 45.0% | |
| AGGTTCACCACTCTCTTTGT+TGG | + | chr3_3:71761057-71761076 | Msa0469780:intron | 45.0% | |
| TGATGATAGCAGGTTTGCAC+AGG | + | chr3_3:71762055-71762074 | Msa0469780:CDS | 45.0% | |
| ! | CGCAAGTGTTGCAACCATAT+TGG | + | chr3_3:71762155-71762174 | Msa0469780:CDS | 45.0% |
| CCACATTCTTGGGAAGATGA+TGG | - | chr3_3:71762311-71762330 | None:intergenic | 45.0% | |
| CCATCATCTTCCCAAGAATG+TGG | + | chr3_3:71762308-71762327 | Msa0469780:CDS | 45.0% | |
| GAAGAAGAGGAGGATGACAA+AGG | - | chr3_3:71760997-71761016 | None:intergenic | 45.0% | |
| CCGAGAAGTAGTAGAAGAAG+AGG | - | chr3_3:71761010-71761029 | None:intergenic | 45.0% | |
| TTCTCGGACTCGTAGTCAAA+GGG | + | chr3_3:71761023-71761042 | Msa0469780:CDS | 45.0% | |
| AGGTTCACCACTCTCTTTGT+TGG | + | chr3_3:71761057-71761076 | Msa0469780:intron | 45.0% | |
| TGATGATAGCAGGTTTGCAC+AGG | + | chr3_3:71762055-71762074 | Msa0469780:CDS | 45.0% | |
| ! | CGCAAGTGTTGCAACCATAT+TGG | + | chr3_3:71762155-71762174 | Msa0469780:CDS | 45.0% |
| CCACATTCTTGGGAAGATGA+TGG | - | chr3_3:71762311-71762330 | None:intergenic | 45.0% | |
| CCATCATCTTCCCAAGAATG+TGG | + | chr3_3:71762308-71762327 | Msa0469780:CDS | 45.0% | |
| CTTCTCGGACTCGTAGTCAA+AGG | + | chr3_3:71761022-71761041 | Msa0469780:CDS | 50.0% | |
| AGAGAGTGGTGAACCTGTAG+CGG | - | chr3_3:71761053-71761072 | None:intergenic | 50.0% | |
| ! | TTTTACAGCTGCGGTTCGTG+CGG | + | chr3_3:71761933-71761952 | Msa0469780:intron | 50.0% |
| GGTGCTTCAGTTGAAGGAGA+TGG | - | chr3_3:71762248-71762267 | None:intergenic | 50.0% | |
| ! | TTGGGAAGATGATGGCTGCA+AGG | - | chr3_3:71762303-71762322 | None:intergenic | 50.0% |
| GAGAAGGGAGGGAAGAAAGA+AGG | - | chr3_3:71760864-71760883 | None:intergenic | 50.0% | |
| CTTCTCGGACTCGTAGTCAA+AGG | + | chr3_3:71761022-71761041 | Msa0469780:CDS | 50.0% | |
| AGAGAGTGGTGAACCTGTAG+CGG | - | chr3_3:71761053-71761072 | None:intergenic | 50.0% | |
| ! | TTTTACAGCTGCGGTTCGTG+CGG | + | chr3_3:71761933-71761952 | Msa0469780:intron | 50.0% |
| GGTGCTTCAGTTGAAGGAGA+TGG | - | chr3_3:71762248-71762267 | None:intergenic | 50.0% | |
| ! | TTGGGAAGATGATGGCTGCA+AGG | - | chr3_3:71762303-71762322 | None:intergenic | 50.0% |
| GTCAAAGGGATGTCCGCTAC+AGG | + | chr3_3:71761037-71761056 | Msa0469780:CDS | 55.0% | |
| CGAGACGGTGCTTCAGTTGA+AGG | - | chr3_3:71762254-71762273 | None:intergenic | 55.0% | |
| GTCAAAGGGATGTCCGCTAC+AGG | + | chr3_3:71761037-71761056 | Msa0469780:CDS | 55.0% | |
| CGAGACGGTGCTTCAGTTGA+AGG | - | chr3_3:71762254-71762273 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 71760862 | 71762535 | 71760862 | ID=Msa0469780;Name=Msa0469780 |
| chr3_3 | mRNA | 71760862 | 71762535 | 71760862 | ID=Msa0469780-mRNA-1;Parent=Msa0469780;Name=Msa0469780-mRNA-1;_AED=0.02;_eAED=0.02;_QI=87|1|1|1|1|1|2|180|174 |
| chr3_3 | exon | 71760862 | 71761058 | 71760862 | ID=Msa0469780-mRNA-1:exon:17651;Parent=Msa0469780-mRNA-1 |
| chr3_3 | exon | 71761941 | 71762535 | 71761941 | ID=Msa0469780-mRNA-1:exon:17652;Parent=Msa0469780-mRNA-1 |
| chr3_3 | five_prime_UTR | 71760862 | 71760948 | 71760862 | ID=Msa0469780-mRNA-1:five_prime_utr;Parent=Msa0469780-mRNA-1 |
| chr3_3 | CDS | 71760949 | 71761058 | 71760949 | ID=Msa0469780-mRNA-1:cds;Parent=Msa0469780-mRNA-1 |
| chr3_3 | CDS | 71761941 | 71762355 | 71761941 | ID=Msa0469780-mRNA-1:cds;Parent=Msa0469780-mRNA-1 |
| chr3_3 | three_prime_UTR | 71762356 | 71762535 | 71762356 | ID=Msa0469780-mRNA-1:three_prime_utr;Parent=Msa0469780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
