Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515410 | XP_003602030.1 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 1.94e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515410 | sp|Q9STN5|Y4833_ARATH | 61.654 | 133 | 46 | 2 | 31 | 163 | 33 | 160 | 1.07e-50 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515410 | G7J4F8 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 9.29e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0469780 | Msa0515410 | 0.878907 | 1.920551e-69 | -8.615850e-47 |
| Msa0469830 | Msa0515410 | 0.810845 | 9.413042e-51 | -8.615850e-47 |
| Msa0515390 | Msa0515410 | 0.964468 | 2.296817e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515410 | MtrunA17_Chr3g0124671 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 1.79e-109 | 309 |
| Msa0515410 | MtrunA17_Chr8g0347721 | 51.852 | 135 | 50 | 4 | 30 | 164 | 2 | 121 | 2.81e-33 | 114 |
| Msa0515410 | MtrunA17_Chr8g0384901 | 45.985 | 137 | 58 | 6 | 32 | 162 | 24 | 150 | 8.17e-25 | 94.0 |
| Msa0515410 | MtrunA17_Chr1g0159961 | 66.176 | 68 | 15 | 3 | 1 | 67 | 1 | 61 | 4.96e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515410 | AT4G08330.1 | 61.654 | 133 | 46 | 2 | 31 | 163 | 33 | 160 | 1.09e-51 | 163 |
| Msa0515410 | AT4G08330.2 | 58.824 | 119 | 44 | 2 | 45 | 163 | 36 | 149 | 6.02e-42 | 138 |
Find 40 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCGATAGATTCAAAATA+TGG | 0.268899 | 3_4:-66633300 | Msa0515410:CDS |
| CGCAAGTGTTGCAACCATAT+TGG | 0.297071 | 3_4:-66633138 | Msa0515410:CDS |
| ATATCCCATTTCCACATTCT+TGG | 0.326262 | 3_4:+66632974 | None:intergenic |
| CCTCTTCTTCTACTACTTCT+CGG | 0.327764 | 3_4:-66634286 | Msa0515410:CDS |
| CATTGTAAGCATAACCAATA+TGG | 0.355065 | 3_4:+66633124 | None:intergenic |
| TCTTCCCAAGAATGTGGAAA+TGG | 0.359240 | 3_4:-66632979 | Msa0515410:CDS |
| TATCCCATTTCCACATTCTT+GGG | 0.383630 | 3_4:+66632975 | None:intergenic |
| ATGCACTATCACACAAATAT+AGG | 0.394685 | 3_4:+66632896 | None:intergenic |
| AATCTATCGATGATGTGTTT+CGG | 0.412775 | 3_4:+66633310 | None:intergenic |
| CCACATTCTTGGGAAGATGA+TGG | 0.443507 | 3_4:+66632985 | None:intergenic |
| CGAGACGGTGCTTCAGTTGA+AGG | 0.452110 | 3_4:+66633042 | None:intergenic |
| CTTCCCAAGAATGTGGAAAT+GGG | 0.463725 | 3_4:-66632978 | Msa0515410:CDS |
| TCGTCAACATTGATGATAGC+AGG | 0.465053 | 3_4:-66633248 | Msa0515410:CDS |
| AAGAAGAGGAGGATGACAAA+GGG | 0.470495 | 3_4:+66634300 | None:intergenic |
| TTTATTCTAGTATCATCAAA+TGG | 0.485734 | 3_4:-66633078 | Msa0515410:CDS |
| GGTTTGATGAGGATAGGTTA+AGG | 0.497317 | 3_4:+66633331 | None:intergenic |
| GTCAAAGGGATGTCCGCTAC+AGG | 0.503245 | 3_4:-66634256 | Msa0515410:intron |
| GAAGAAGAGGAGGATGACAA+AGG | 0.510515 | 3_4:+66634299 | None:intergenic |
| TGATGATAGCAGGTTTGCAC+AGG | 0.514951 | 3_4:-66633238 | Msa0515410:CDS |
| TAATACTCACCAGCAACAAA+AGG | 0.521848 | 3_4:-66632868 | Msa0515410:three_prime_UTR |
| TTCTCGGACTCGTAGTCAAA+GGG | 0.522748 | 3_4:-66634270 | Msa0515410:CDS |
| CCGAGAAGTAGTAGAAGAAG+AGG | 0.529630 | 3_4:+66634286 | None:intergenic |
| CACGTAAATTATTATAGAGA+AGG | 0.538127 | 3_4:+66634402 | None:intergenic |
| GAAAATTTACATACATATTG+TGG | 0.543436 | 3_4:-66632939 | Msa0515410:three_prime_UTR |
| AGAAGTAGTAGAAGAAGAGG+AGG | 0.549787 | 3_4:+66634289 | None:intergenic |
| TGGAAATGGGATATCTGTCT+TGG | 0.550576 | 3_4:-66632965 | Msa0515410:CDS |
| CTTCTCGGACTCGTAGTCAA+AGG | 0.553294 | 3_4:-66634271 | Msa0515410:CDS |
| CATATTGGTTATGCTTACAA+TGG | 0.558093 | 3_4:-66633123 | Msa0515410:CDS |
| GGTGCTTCAGTTGAAGGAGA+TGG | 0.568432 | 3_4:+66633048 | None:intergenic |
| TGTTTCGGTTTGATGAGGAT+AGG | 0.584347 | 3_4:+66633325 | None:intergenic |
| CCATCATCTTCCCAAGAATG+TGG | 0.600174 | 3_4:-66632985 | Msa0515410:CDS |
| AAATTATTATAGAGAAGGGA+GGG | 0.605540 | 3_4:+66634407 | None:intergenic |
| TTGGGAAGATGATGGCTGCA+AGG | 0.606294 | 3_4:+66632993 | None:intergenic |
| ACGTAAATTATTATAGAGAA+GGG | 0.611259 | 3_4:+66634403 | None:intergenic |
| TGATGTGTTTCGGTTTGATG+AGG | 0.619348 | 3_4:+66633320 | None:intergenic |
| TAAATTATTATAGAGAAGGG+AGG | 0.622746 | 3_4:+66634406 | None:intergenic |
| GATGATACTAGAATAAATGA+TGG | 0.622976 | 3_4:+66633084 | None:intergenic |
| AGAGAGTGGTGAACCTGTAG+CGG | 0.624601 | 3_4:+66634243 | None:intergenic |
| ATGTTGTATTTCACACGAGA+CGG | 0.639297 | 3_4:+66633027 | None:intergenic |
| TATGGAAAATCAATAAAACG+AGG | 0.753759 | 3_4:-66633282 | Msa0515410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAGTTTAAGAAAATTA+GGG | + | chr3_4:66633360-66633379 | None:intergenic | 10.0% |
| !! | TAATAAGTTTAAGAAAATTA+GGG | + | chr3_4:66633360-66633379 | None:intergenic | 10.0% |
| !! | TGTATAAACATAAATAGAAA+TGG | + | chr3_4:66633071-66633090 | None:intergenic | 15.0% |
| !! | CTAATAAGTTTAAGAAAATT+AGG | + | chr3_4:66633361-66633380 | None:intergenic | 15.0% |
| !!! | AGAATTTTAAATGTATGATA+AGG | + | chr3_4:66633723-66633742 | None:intergenic | 15.0% |
| !!! | TACATTTAAAATTCTTGTTT+TGG | - | chr3_4:66633728-66633747 | Msa0515410:intron | 15.0% |
| !! | TGTATAAACATAAATAGAAA+TGG | + | chr3_4:66633071-66633090 | None:intergenic | 15.0% |
| !! | CTAATAAGTTTAAGAAAATT+AGG | + | chr3_4:66633361-66633380 | None:intergenic | 15.0% |
| !!! | AGAATTTTAAATGTATGATA+AGG | + | chr3_4:66633723-66633742 | None:intergenic | 15.0% |
| !!! | TACATTTAAAATTCTTGTTT+TGG | - | chr3_4:66633728-66633747 | Msa0515410:intron | 15.0% |
| !! | ACGTAAATTATTATAGAGAA+GGG | + | chr3_4:66632871-66632890 | None:intergenic | 20.0% |
| !!! | TTCAATAATTAATTTTGCCT+TGG | - | chr3_4:66633104-66633123 | Msa0515410:CDS | 20.0% |
| !!! | GATTTTTTATACTTTCATAG+AGG | - | chr3_4:66633209-66633228 | Msa0515410:CDS | 20.0% |
| !!! | ATTGCAATAATTTTGACAAT+AGG | + | chr3_4:66633279-66633298 | None:intergenic | 20.0% |
| !!! | AAACATTTTTCATTTTGCTT+AGG | - | chr3_4:66633509-66633528 | Msa0515410:intron | 20.0% |
| !! | CTAGAAATTAATTGAAATGA+AGG | - | chr3_4:66633653-66633672 | Msa0515410:intron | 20.0% |
| !! | AATTAATTGAAATGAAGGAA+AGG | - | chr3_4:66633658-66633677 | Msa0515410:intron | 20.0% |
| !! | ATTAATTGAAATGAAGGAAA+GGG | - | chr3_4:66633659-66633678 | Msa0515410:intron | 20.0% |
| !! | TGAAATATGTAAATCATGAT+CGG | + | chr3_4:66633869-66633888 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTAAGAATTTGT+GGG | - | chr3_4:66634078-66634097 | Msa0515410:intron | 20.0% |
| !! | TTTATTCTAGTATCATCAAA+TGG | - | chr3_4:66634193-66634212 | Msa0515410:intron | 20.0% |
| !! | GAAAATTTACATACATATTG+TGG | - | chr3_4:66634332-66634351 | Msa0515410:CDS | 20.0% |
| !! | ACGTAAATTATTATAGAGAA+GGG | + | chr3_4:66632871-66632890 | None:intergenic | 20.0% |
| !!! | TTCAATAATTAATTTTGCCT+TGG | - | chr3_4:66633104-66633123 | Msa0515410:CDS | 20.0% |
| !!! | GATTTTTTATACTTTCATAG+AGG | - | chr3_4:66633209-66633228 | Msa0515410:CDS | 20.0% |
| !!! | ATTGCAATAATTTTGACAAT+AGG | + | chr3_4:66633279-66633298 | None:intergenic | 20.0% |
| !!! | AAACATTTTTCATTTTGCTT+AGG | - | chr3_4:66633509-66633528 | Msa0515410:intron | 20.0% |
| !! | CTAGAAATTAATTGAAATGA+AGG | - | chr3_4:66633653-66633672 | Msa0515410:intron | 20.0% |
| !! | AATTAATTGAAATGAAGGAA+AGG | - | chr3_4:66633658-66633677 | Msa0515410:intron | 20.0% |
| !! | ATTAATTGAAATGAAGGAAA+GGG | - | chr3_4:66633659-66633678 | Msa0515410:intron | 20.0% |
| !! | TGAAATATGTAAATCATGAT+CGG | + | chr3_4:66633869-66633888 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTAAGAATTTGT+GGG | - | chr3_4:66634078-66634097 | Msa0515410:intron | 20.0% |
| !! | TTTATTCTAGTATCATCAAA+TGG | - | chr3_4:66634193-66634212 | Msa0515410:intron | 20.0% |
| !! | GAAAATTTACATACATATTG+TGG | - | chr3_4:66634332-66634351 | Msa0515410:CDS | 20.0% |
| ! | AAATTATTATAGAGAAGGGA+GGG | + | chr3_4:66632867-66632886 | None:intergenic | 25.0% |
| ! | TAAATTATTATAGAGAAGGG+AGG | + | chr3_4:66632868-66632887 | None:intergenic | 25.0% |
| ! | CACGTAAATTATTATAGAGA+AGG | + | chr3_4:66632872-66632891 | None:intergenic | 25.0% |
| ! | TTCTCTTCAATCACAAAAAA+TGG | - | chr3_4:66632908-66632927 | Msa0515410:three_prime_UTR | 25.0% |
| ! | ACTTACATGATTAATTTCCA+AGG | + | chr3_4:66633124-66633143 | None:intergenic | 25.0% |
| ! | GAAAACTACTGTTTGTAAAT+AGG | - | chr3_4:66633152-66633171 | Msa0515410:CDS | 25.0% |
| ! | ATAATCATTTAATCCACTCA+AGG | + | chr3_4:66633572-66633591 | None:intergenic | 25.0% |
| ! | GGATTAAATGATTATTTGTC+CGG | - | chr3_4:66633577-66633596 | Msa0515410:intron | 25.0% |
| ! | TTAAATGTATGATAAGGCTA+TGG | + | chr3_4:66633717-66633736 | None:intergenic | 25.0% |
| ! | GAAATACTAGAAAATCCATT+TGG | + | chr3_4:66633784-66633803 | None:intergenic | 25.0% |
| ! | TCATCGATAGATTCAAAATA+TGG | - | chr3_4:66633971-66633990 | Msa0515410:intron | 25.0% |
| ! | TATGGAAAATCAATAAAACG+AGG | - | chr3_4:66633989-66634008 | Msa0515410:intron | 25.0% |
| ! | CACAAATTCTTAGAAAAATG+AGG | + | chr3_4:66634079-66634098 | None:intergenic | 25.0% |
| !!! | CTCATTTTTCTAAGAATTTG+TGG | - | chr3_4:66634077-66634096 | Msa0515410:intron | 25.0% |
| !!! | CATTTTTCTAAGAATTTGTG+GGG | - | chr3_4:66634079-66634098 | Msa0515410:intron | 25.0% |
| ! | GATGATACTAGAATAAATGA+TGG | + | chr3_4:66634190-66634209 | None:intergenic | 25.0% |
| ! | AAATTATTATAGAGAAGGGA+GGG | + | chr3_4:66632867-66632886 | None:intergenic | 25.0% |
| ! | TAAATTATTATAGAGAAGGG+AGG | + | chr3_4:66632868-66632887 | None:intergenic | 25.0% |
| ! | CACGTAAATTATTATAGAGA+AGG | + | chr3_4:66632872-66632891 | None:intergenic | 25.0% |
| ! | TTCTCTTCAATCACAAAAAA+TGG | - | chr3_4:66632908-66632927 | Msa0515410:three_prime_UTR | 25.0% |
| ! | ACTTACATGATTAATTTCCA+AGG | + | chr3_4:66633124-66633143 | None:intergenic | 25.0% |
| ! | GAAAACTACTGTTTGTAAAT+AGG | - | chr3_4:66633152-66633171 | Msa0515410:CDS | 25.0% |
| ! | ATAATCATTTAATCCACTCA+AGG | + | chr3_4:66633572-66633591 | None:intergenic | 25.0% |
| ! | GGATTAAATGATTATTTGTC+CGG | - | chr3_4:66633577-66633596 | Msa0515410:intron | 25.0% |
| ! | TTAAATGTATGATAAGGCTA+TGG | + | chr3_4:66633717-66633736 | None:intergenic | 25.0% |
| ! | GAAATACTAGAAAATCCATT+TGG | + | chr3_4:66633784-66633803 | None:intergenic | 25.0% |
| ! | TCATCGATAGATTCAAAATA+TGG | - | chr3_4:66633971-66633990 | Msa0515410:intron | 25.0% |
| ! | TATGGAAAATCAATAAAACG+AGG | - | chr3_4:66633989-66634008 | Msa0515410:intron | 25.0% |
| ! | CACAAATTCTTAGAAAAATG+AGG | + | chr3_4:66634079-66634098 | None:intergenic | 25.0% |
| !!! | CTCATTTTTCTAAGAATTTG+TGG | - | chr3_4:66634077-66634096 | Msa0515410:intron | 25.0% |
| !!! | CATTTTTCTAAGAATTTGTG+GGG | - | chr3_4:66634079-66634098 | Msa0515410:intron | 25.0% |
| ! | GATGATACTAGAATAAATGA+TGG | + | chr3_4:66634190-66634209 | None:intergenic | 25.0% |
| ! | AACTTTTGATCTAACTGACT+TGG | - | chr3_4:66633175-66633194 | Msa0515410:CDS | 30.0% |
| !! | TCTTATTTCTATCTCTCTCA+AGG | - | chr3_4:66633460-66633479 | Msa0515410:intron | 30.0% |
| TCTAAATCATCATGAACTAC+CGG | + | chr3_4:66633599-66633618 | None:intergenic | 30.0% | |
| CTGGAGAATGATATATCTAA+GGG | - | chr3_4:66633628-66633647 | Msa0515410:intron | 30.0% | |
| CATTGTCACAAACATTGAAA+AGG | - | chr3_4:66633689-66633708 | Msa0515410:intron | 30.0% | |
| ! | TCTCATTTTCTGTTTCCAAA+TGG | - | chr3_4:66633766-66633785 | Msa0515410:intron | 30.0% |
| AATATGTAAATCATGATCGG+AGG | + | chr3_4:66633866-66633885 | None:intergenic | 30.0% | |
| AATCTATCGATGATGTGTTT+CGG | + | chr3_4:66633964-66633983 | None:intergenic | 30.0% | |
| CATTGTAAGCATAACCAATA+TGG | + | chr3_4:66634150-66634169 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATGCTTACAA+TGG | - | chr3_4:66634148-66634167 | Msa0515410:intron | 30.0% |
| ATGCACTATCACACAAATAT+AGG | + | chr3_4:66634378-66634397 | None:intergenic | 30.0% | |
| ! | AACTTTTGATCTAACTGACT+TGG | - | chr3_4:66633175-66633194 | Msa0515410:CDS | 30.0% |
| !! | TCTTATTTCTATCTCTCTCA+AGG | - | chr3_4:66633460-66633479 | Msa0515410:intron | 30.0% |
| TCTAAATCATCATGAACTAC+CGG | + | chr3_4:66633599-66633618 | None:intergenic | 30.0% | |
| CTGGAGAATGATATATCTAA+GGG | - | chr3_4:66633628-66633647 | Msa0515410:intron | 30.0% | |
| CATTGTCACAAACATTGAAA+AGG | - | chr3_4:66633689-66633708 | Msa0515410:intron | 30.0% | |
| ! | TCTCATTTTCTGTTTCCAAA+TGG | - | chr3_4:66633766-66633785 | Msa0515410:intron | 30.0% |
| AATATGTAAATCATGATCGG+AGG | + | chr3_4:66633866-66633885 | None:intergenic | 30.0% | |
| AATCTATCGATGATGTGTTT+CGG | + | chr3_4:66633964-66633983 | None:intergenic | 30.0% | |
| CATTGTAAGCATAACCAATA+TGG | + | chr3_4:66634150-66634169 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATGCTTACAA+TGG | - | chr3_4:66634148-66634167 | Msa0515410:intron | 30.0% |
| ATGCACTATCACACAAATAT+AGG | + | chr3_4:66634378-66634397 | None:intergenic | 30.0% | |
| TTGCAATGAGTAGTACTAGT+TGG | - | chr3_4:66633292-66633311 | Msa0515410:CDS | 35.0% | |
| !! | AGAGAAAATCAAGTGTTGGA+TGG | + | chr3_4:66633388-66633407 | None:intergenic | 35.0% |
| GAAGAGAGAAAATCAAGTGT+TGG | + | chr3_4:66633392-66633411 | None:intergenic | 35.0% | |
| !! | TGATAAGTTGATGATGTGAC+AGG | + | chr3_4:66633414-66633433 | None:intergenic | 35.0% |
| ATACACCTATTGGAATGCAT+AGG | - | chr3_4:66633486-66633505 | Msa0515410:intron | 35.0% | |
| TGTTTCCTATGCATTCCAAT+AGG | + | chr3_4:66633494-66633513 | None:intergenic | 35.0% | |
| CCTTAGATATATCATTCTCC+AGG | + | chr3_4:66633630-66633649 | None:intergenic | 35.0% | |
| CCTGGAGAATGATATATCTA+AGG | - | chr3_4:66633627-66633646 | Msa0515410:intron | 35.0% | |
| AAATCATGATCGGAGGAATT+AGG | + | chr3_4:66633859-66633878 | None:intergenic | 35.0% | |
| !!! | TACTGTGTTTTTTACAGCTG+CGG | - | chr3_4:66633902-66633921 | Msa0515410:intron | 35.0% |
| ATGTTGTATTTCACACGAGA+CGG | + | chr3_4:66634247-66634266 | None:intergenic | 35.0% | |
| TATCCCATTTCCACATTCTT+GGG | + | chr3_4:66634299-66634318 | None:intergenic | 35.0% | |
| ATATCCCATTTCCACATTCT+TGG | + | chr3_4:66634300-66634319 | None:intergenic | 35.0% | |
| TAATACTCACCAGCAACAAA+AGG | - | chr3_4:66634403-66634422 | Msa0515410:five_prime_UTR | 35.0% | |
| ! | AAGAATACACCTTTTGTTGC+TGG | + | chr3_4:66634415-66634434 | None:intergenic | 35.0% |
| TTGCAATGAGTAGTACTAGT+TGG | - | chr3_4:66633292-66633311 | Msa0515410:CDS | 35.0% | |
| !! | AGAGAAAATCAAGTGTTGGA+TGG | + | chr3_4:66633388-66633407 | None:intergenic | 35.0% |
| GAAGAGAGAAAATCAAGTGT+TGG | + | chr3_4:66633392-66633411 | None:intergenic | 35.0% | |
| !! | TGATAAGTTGATGATGTGAC+AGG | + | chr3_4:66633414-66633433 | None:intergenic | 35.0% |
| ATACACCTATTGGAATGCAT+AGG | - | chr3_4:66633486-66633505 | Msa0515410:intron | 35.0% | |
| TGTTTCCTATGCATTCCAAT+AGG | + | chr3_4:66633494-66633513 | None:intergenic | 35.0% | |
| CCTTAGATATATCATTCTCC+AGG | + | chr3_4:66633630-66633649 | None:intergenic | 35.0% | |
| CCTGGAGAATGATATATCTA+AGG | - | chr3_4:66633627-66633646 | Msa0515410:intron | 35.0% | |
| AAATCATGATCGGAGGAATT+AGG | + | chr3_4:66633859-66633878 | None:intergenic | 35.0% | |
| !!! | TACTGTGTTTTTTACAGCTG+CGG | - | chr3_4:66633902-66633921 | Msa0515410:intron | 35.0% |
| ATGTTGTATTTCACACGAGA+CGG | + | chr3_4:66634247-66634266 | None:intergenic | 35.0% | |
| TATCCCATTTCCACATTCTT+GGG | + | chr3_4:66634299-66634318 | None:intergenic | 35.0% | |
| ATATCCCATTTCCACATTCT+TGG | + | chr3_4:66634300-66634319 | None:intergenic | 35.0% | |
| TAATACTCACCAGCAACAAA+AGG | - | chr3_4:66634403-66634422 | Msa0515410:five_prime_UTR | 35.0% | |
| ! | AAGAATACACCTTTTGTTGC+TGG | + | chr3_4:66634415-66634434 | None:intergenic | 35.0% |
| AAGAAGAGGAGGATGACAAA+GGG | + | chr3_4:66632974-66632993 | None:intergenic | 40.0% | |
| AGAAGTAGTAGAAGAAGAGG+AGG | + | chr3_4:66632985-66633004 | None:intergenic | 40.0% | |
| CCTCTTCTTCTACTACTTCT+CGG | - | chr3_4:66632985-66633004 | Msa0515410:CDS | 40.0% | |
| TTTGCAACCAACAAAGAGAG+TGG | + | chr3_4:66633045-66633064 | None:intergenic | 40.0% | |
| CTCAAGGTGTATACACCTAT+TGG | - | chr3_4:66633476-66633495 | Msa0515410:intron | 40.0% | |
| TGCTTAGGTTTCATTCTCAG+AGG | - | chr3_4:66633524-66633543 | Msa0515410:intron | 40.0% | |
| GCTTAGGTTTCATTCTCAGA+GGG | - | chr3_4:66633525-66633544 | Msa0515410:intron | 40.0% | |
| !! | CAGTAAAAAAGCACCTTGAG+TGG | - | chr3_4:66633556-66633575 | Msa0515410:intron | 40.0% |
| ATGATTTAGATGCAAGAGCC+TGG | - | chr3_4:66633609-66633628 | Msa0515410:intron | 40.0% | |
| GGTTTGATGAGGATAGGTTA+AGG | + | chr3_4:66633943-66633962 | None:intergenic | 40.0% | |
| ! | TGTTTCGGTTTGATGAGGAT+AGG | + | chr3_4:66633949-66633968 | None:intergenic | 40.0% |
| ! | TGATGTGTTTCGGTTTGATG+AGG | + | chr3_4:66633954-66633973 | None:intergenic | 40.0% |
| ! | TCGTCAACATTGATGATAGC+AGG | - | chr3_4:66634023-66634042 | Msa0515410:intron | 40.0% |
| TCTTCCCAAGAATGTGGAAA+TGG | - | chr3_4:66634292-66634311 | Msa0515410:CDS | 40.0% | |
| CTTCCCAAGAATGTGGAAAT+GGG | - | chr3_4:66634293-66634312 | Msa0515410:CDS | 40.0% | |
| TGGAAATGGGATATCTGTCT+TGG | - | chr3_4:66634306-66634325 | Msa0515410:CDS | 40.0% | |
| AAGAAGAGGAGGATGACAAA+GGG | + | chr3_4:66632974-66632993 | None:intergenic | 40.0% | |
| AGAAGTAGTAGAAGAAGAGG+AGG | + | chr3_4:66632985-66633004 | None:intergenic | 40.0% | |
| CCTCTTCTTCTACTACTTCT+CGG | - | chr3_4:66632985-66633004 | Msa0515410:CDS | 40.0% | |
| TTTGCAACCAACAAAGAGAG+TGG | + | chr3_4:66633045-66633064 | None:intergenic | 40.0% | |
| CTCAAGGTGTATACACCTAT+TGG | - | chr3_4:66633476-66633495 | Msa0515410:intron | 40.0% | |
| TGCTTAGGTTTCATTCTCAG+AGG | - | chr3_4:66633524-66633543 | Msa0515410:intron | 40.0% | |
| GCTTAGGTTTCATTCTCAGA+GGG | - | chr3_4:66633525-66633544 | Msa0515410:intron | 40.0% | |
| !! | CAGTAAAAAAGCACCTTGAG+TGG | - | chr3_4:66633556-66633575 | Msa0515410:intron | 40.0% |
| ATGATTTAGATGCAAGAGCC+TGG | - | chr3_4:66633609-66633628 | Msa0515410:intron | 40.0% | |
| GGTTTGATGAGGATAGGTTA+AGG | + | chr3_4:66633943-66633962 | None:intergenic | 40.0% | |
| ! | TGTTTCGGTTTGATGAGGAT+AGG | + | chr3_4:66633949-66633968 | None:intergenic | 40.0% |
| ! | TGATGTGTTTCGGTTTGATG+AGG | + | chr3_4:66633954-66633973 | None:intergenic | 40.0% |
| ! | TCGTCAACATTGATGATAGC+AGG | - | chr3_4:66634023-66634042 | Msa0515410:intron | 40.0% |
| TCTTCCCAAGAATGTGGAAA+TGG | - | chr3_4:66634292-66634311 | Msa0515410:CDS | 40.0% | |
| CTTCCCAAGAATGTGGAAAT+GGG | - | chr3_4:66634293-66634312 | Msa0515410:CDS | 40.0% | |
| TGGAAATGGGATATCTGTCT+TGG | - | chr3_4:66634306-66634325 | Msa0515410:CDS | 40.0% | |
| GAAGAAGAGGAGGATGACAA+AGG | + | chr3_4:66632975-66632994 | None:intergenic | 45.0% | |
| CCGAGAAGTAGTAGAAGAAG+AGG | + | chr3_4:66632988-66633007 | None:intergenic | 45.0% | |
| TTCTCGGACTCGTAGTCAAA+GGG | - | chr3_4:66633001-66633020 | Msa0515410:CDS | 45.0% | |
| AGGTTCACCACTCTCTTTGT+TGG | - | chr3_4:66633035-66633054 | Msa0515410:CDS | 45.0% | |
| TGATGATAGCAGGTTTGCAC+AGG | - | chr3_4:66634033-66634052 | Msa0515410:intron | 45.0% | |
| ! | CGCAAGTGTTGCAACCATAT+TGG | - | chr3_4:66634133-66634152 | Msa0515410:intron | 45.0% |
| CCACATTCTTGGGAAGATGA+TGG | + | chr3_4:66634289-66634308 | None:intergenic | 45.0% | |
| CCATCATCTTCCCAAGAATG+TGG | - | chr3_4:66634286-66634305 | Msa0515410:CDS | 45.0% | |
| AGAAGGGAGGGAAGAAAGAA+GGG | + | chr3_4:66632855-66632874 | None:intergenic | 45.0% | |
| GAAGAAGAGGAGGATGACAA+AGG | + | chr3_4:66632975-66632994 | None:intergenic | 45.0% | |
| CCGAGAAGTAGTAGAAGAAG+AGG | + | chr3_4:66632988-66633007 | None:intergenic | 45.0% | |
| TTCTCGGACTCGTAGTCAAA+GGG | - | chr3_4:66633001-66633020 | Msa0515410:CDS | 45.0% | |
| AGGTTCACCACTCTCTTTGT+TGG | - | chr3_4:66633035-66633054 | Msa0515410:CDS | 45.0% | |
| TGATGATAGCAGGTTTGCAC+AGG | - | chr3_4:66634033-66634052 | Msa0515410:intron | 45.0% | |
| ! | CGCAAGTGTTGCAACCATAT+TGG | - | chr3_4:66634133-66634152 | Msa0515410:intron | 45.0% |
| CCACATTCTTGGGAAGATGA+TGG | + | chr3_4:66634289-66634308 | None:intergenic | 45.0% | |
| CCATCATCTTCCCAAGAATG+TGG | - | chr3_4:66634286-66634305 | Msa0515410:CDS | 45.0% | |
| CTTCTCGGACTCGTAGTCAA+AGG | - | chr3_4:66633000-66633019 | Msa0515410:CDS | 50.0% | |
| AGAGAGTGGTGAACCTGTAG+CGG | + | chr3_4:66633031-66633050 | None:intergenic | 50.0% | |
| ! | TTTTACAGCTGCGGTTCGTG+CGG | - | chr3_4:66633911-66633930 | Msa0515410:intron | 50.0% |
| GGTGCTTCAGTTGAAGGAGA+TGG | + | chr3_4:66634226-66634245 | None:intergenic | 50.0% | |
| ! | TTGGGAAGATGATGGCTGCA+AGG | + | chr3_4:66634281-66634300 | None:intergenic | 50.0% |
| GAGAAGGGAGGGAAGAAAGA+AGG | + | chr3_4:66632856-66632875 | None:intergenic | 50.0% | |
| CTTCTCGGACTCGTAGTCAA+AGG | - | chr3_4:66633000-66633019 | Msa0515410:CDS | 50.0% | |
| AGAGAGTGGTGAACCTGTAG+CGG | + | chr3_4:66633031-66633050 | None:intergenic | 50.0% | |
| ! | TTTTACAGCTGCGGTTCGTG+CGG | - | chr3_4:66633911-66633930 | Msa0515410:intron | 50.0% |
| GGTGCTTCAGTTGAAGGAGA+TGG | + | chr3_4:66634226-66634245 | None:intergenic | 50.0% | |
| ! | TTGGGAAGATGATGGCTGCA+AGG | + | chr3_4:66634281-66634300 | None:intergenic | 50.0% |
| GTCAAAGGGATGTCCGCTAC+AGG | - | chr3_4:66633015-66633034 | Msa0515410:CDS | 55.0% | |
| CGAGACGGTGCTTCAGTTGA+AGG | + | chr3_4:66634232-66634251 | None:intergenic | 55.0% | |
| GTCAAAGGGATGTCCGCTAC+AGG | - | chr3_4:66633015-66633034 | Msa0515410:CDS | 55.0% | |
| CGAGACGGTGCTTCAGTTGA+AGG | + | chr3_4:66634232-66634251 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 66632854 | 66634439 | 66632854 | ID=Msa0515410;Name=Msa0515410 |
| chr3_4 | mRNA | 66632854 | 66634439 | 66632854 | ID=Msa0515410-mRNA-1;Parent=Msa0515410;Name=Msa0515410-mRNA-1;_AED=0.41;_eAED=0.41;_QI=73|1|1|1|1|1|2|106|174 |
| chr3_4 | exon | 66632854 | 66633374 | 66632854 | ID=Msa0515410-mRNA-1:exon:17205;Parent=Msa0515410-mRNA-1 |
| chr3_4 | exon | 66634257 | 66634439 | 66634257 | ID=Msa0515410-mRNA-1:exon:17204;Parent=Msa0515410-mRNA-1 |
| chr3_4 | five_prime_UTR | 66634367 | 66634439 | 66634367 | ID=Msa0515410-mRNA-1:five_prime_utr;Parent=Msa0515410-mRNA-1 |
| chr3_4 | CDS | 66634257 | 66634366 | 66634257 | ID=Msa0515410-mRNA-1:cds;Parent=Msa0515410-mRNA-1 |
| chr3_4 | CDS | 66632960 | 66633374 | 66632960 | ID=Msa0515410-mRNA-1:cds;Parent=Msa0515410-mRNA-1 |
| chr3_4 | three_prime_UTR | 66632854 | 66632959 | 66632854 | ID=Msa0515410-mRNA-1:three_prime_utr;Parent=Msa0515410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
