Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515390 | XP_003602030.1 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 1.94e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515390 | sp|Q9STN5|Y4833_ARATH | 61.654 | 133 | 46 | 2 | 31 | 163 | 33 | 160 | 1.07e-50 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515390 | G7J4F8 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 9.29e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0469780 | Msa0515390 | 0.896545 | 3.327222e-76 | -8.615850e-47 |
| Msa0469830 | Msa0515390 | 0.849623 | 2.871670e-60 | -8.615850e-47 |
| Msa0515390 | Msa0515410 | 0.964468 | 2.296817e-123 | -8.615850e-47 |
| Msa0515390 | Msa1344130 | 0.807289 | 5.436433e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515390 | MtrunA17_Chr3g0124671 | 93.182 | 176 | 10 | 1 | 1 | 174 | 1 | 176 | 1.79e-109 | 309 |
| Msa0515390 | MtrunA17_Chr8g0347721 | 51.852 | 135 | 50 | 4 | 30 | 164 | 2 | 121 | 2.81e-33 | 114 |
| Msa0515390 | MtrunA17_Chr8g0384901 | 45.985 | 137 | 58 | 6 | 32 | 162 | 24 | 150 | 8.17e-25 | 94.0 |
| Msa0515390 | MtrunA17_Chr1g0159961 | 66.176 | 68 | 15 | 3 | 1 | 67 | 1 | 61 | 4.96e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515390 | AT4G08330.1 | 61.654 | 133 | 46 | 2 | 31 | 163 | 33 | 160 | 1.09e-51 | 163 |
| Msa0515390 | AT4G08330.2 | 58.824 | 119 | 44 | 2 | 45 | 163 | 36 | 149 | 6.02e-42 | 138 |
Find 43 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCGATAGATTCAAAATA+TGG | 0.268899 | 3_4:-66624625 | Msa0515390:CDS |
| TCCCAACATCTTTGTTGCTT+TGG | 0.288213 | 3_4:+66624158 | None:intergenic |
| CGCAAGTGTTGCAACCATAT+TGG | 0.297071 | 3_4:-66624463 | Msa0515390:CDS |
| ATATCCCATTTCCACATTCT+TGG | 0.326262 | 3_4:+66624299 | None:intergenic |
| CCTCTTCTTCTACTACTTCT+CGG | 0.327764 | 3_4:-66625611 | Msa0515390:CDS |
| CATTGTAAGCATAACCAATA+TGG | 0.355065 | 3_4:+66624449 | None:intergenic |
| TCTTCCCAAGAATGTGGAAA+TGG | 0.359240 | 3_4:-66624304 | Msa0515390:CDS |
| TATCCCATTTCCACATTCTT+GGG | 0.383630 | 3_4:+66624300 | None:intergenic |
| ATGCACTATCACACAAATAT+AGG | 0.394685 | 3_4:+66624221 | None:intergenic |
| AATCTATCGATGATGTGTTT+CGG | 0.412775 | 3_4:+66624635 | None:intergenic |
| ACCAAAGCAACAAAGATGTT+GGG | 0.418636 | 3_4:-66624159 | Msa0515390:three_prime_UTR |
| CCACATTCTTGGGAAGATGA+TGG | 0.443507 | 3_4:+66624310 | None:intergenic |
| TACCAAAGCAACAAAGATGT+TGG | 0.448057 | 3_4:-66624160 | Msa0515390:three_prime_UTR |
| CGAGACGGTGCTTCAGTTGA+AGG | 0.452110 | 3_4:+66624367 | None:intergenic |
| CTTCCCAAGAATGTGGAAAT+GGG | 0.463725 | 3_4:-66624303 | Msa0515390:CDS |
| TCGTCAACATTGATGATAGC+AGG | 0.465053 | 3_4:-66624573 | Msa0515390:CDS |
| AAGAAGAGGAGGATGACAAA+GGG | 0.470495 | 3_4:+66625625 | None:intergenic |
| TTTATTCTAGTATCATCAAA+TGG | 0.485734 | 3_4:-66624403 | Msa0515390:CDS |
| GGTTTGATGAGGATAGGTTA+AGG | 0.497317 | 3_4:+66624656 | None:intergenic |
| GTCAAAGGGATGTCCGCTAC+AGG | 0.503245 | 3_4:-66625581 | Msa0515390:intron |
| GAAGAAGAGGAGGATGACAA+AGG | 0.510515 | 3_4:+66625624 | None:intergenic |
| TGATGATAGCAGGTTTGCAC+AGG | 0.514951 | 3_4:-66624563 | Msa0515390:CDS |
| TAATACTCACCAGCAACAAA+AGG | 0.521848 | 3_4:-66624193 | Msa0515390:three_prime_UTR |
| TTCTCGGACTCGTAGTCAAA+GGG | 0.522748 | 3_4:-66625595 | Msa0515390:CDS |
| CCGAGAAGTAGTAGAAGAAG+AGG | 0.529630 | 3_4:+66625611 | None:intergenic |
| CACGTAAATTATTATAGAGA+AGG | 0.538127 | 3_4:+66625727 | None:intergenic |
| GAAAATTTACATACATATTG+TGG | 0.543436 | 3_4:-66624264 | Msa0515390:three_prime_UTR |
| AGAAGTAGTAGAAGAAGAGG+AGG | 0.549787 | 3_4:+66625614 | None:intergenic |
| TGGAAATGGGATATCTGTCT+TGG | 0.550576 | 3_4:-66624290 | Msa0515390:CDS |
| CTTCTCGGACTCGTAGTCAA+AGG | 0.553294 | 3_4:-66625596 | Msa0515390:CDS |
| CATATTGGTTATGCTTACAA+TGG | 0.558093 | 3_4:-66624448 | Msa0515390:CDS |
| GGTGCTTCAGTTGAAGGAGA+TGG | 0.568432 | 3_4:+66624373 | None:intergenic |
| TGTTTCGGTTTGATGAGGAT+AGG | 0.584347 | 3_4:+66624650 | None:intergenic |
| CCATCATCTTCCCAAGAATG+TGG | 0.600174 | 3_4:-66624310 | Msa0515390:CDS |
| AAATTATTATAGAGAAGGGA+GGG | 0.605540 | 3_4:+66625732 | None:intergenic |
| TTGGGAAGATGATGGCTGCA+AGG | 0.606294 | 3_4:+66624318 | None:intergenic |
| ACGTAAATTATTATAGAGAA+GGG | 0.611259 | 3_4:+66625728 | None:intergenic |
| TGATGTGTTTCGGTTTGATG+AGG | 0.619348 | 3_4:+66624645 | None:intergenic |
| TAAATTATTATAGAGAAGGG+AGG | 0.622746 | 3_4:+66625731 | None:intergenic |
| GATGATACTAGAATAAATGA+TGG | 0.622976 | 3_4:+66624409 | None:intergenic |
| AGAGAGTGGTGAACCTGTAG+CGG | 0.624601 | 3_4:+66625568 | None:intergenic |
| ATGTTGTATTTCACACGAGA+CGG | 0.639297 | 3_4:+66624352 | None:intergenic |
| TATGGAAAATCAATAAAACG+AGG | 0.753759 | 3_4:-66624607 | Msa0515390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAGTTTAAGAAAATTA+GGG | + | chr3_4:66624663-66624682 | None:intergenic | 10.0% |
| !! | TAATAAGTTTAAGAAAATTA+GGG | + | chr3_4:66624663-66624682 | None:intergenic | 10.0% |
| !! | TGTATAAACATAAATAGAAA+TGG | + | chr3_4:66624374-66624393 | None:intergenic | 15.0% |
| !! | CTAATAAGTTTAAGAAAATT+AGG | + | chr3_4:66624664-66624683 | None:intergenic | 15.0% |
| !!! | AGAATTTTAAATGTATGATA+AGG | + | chr3_4:66625026-66625045 | None:intergenic | 15.0% |
| !!! | TACATTTAAAATTCTTGTTT+TGG | - | chr3_4:66625031-66625050 | Msa0515390:intron | 15.0% |
| !! | TGTATAAACATAAATAGAAA+TGG | + | chr3_4:66624374-66624393 | None:intergenic | 15.0% |
| !! | CTAATAAGTTTAAGAAAATT+AGG | + | chr3_4:66624664-66624683 | None:intergenic | 15.0% |
| !!! | AGAATTTTAAATGTATGATA+AGG | + | chr3_4:66625026-66625045 | None:intergenic | 15.0% |
| !!! | TACATTTAAAATTCTTGTTT+TGG | - | chr3_4:66625031-66625050 | Msa0515390:intron | 15.0% |
| !! | ACGTAAATTATTATAGAGAA+GGG | + | chr3_4:66624174-66624193 | None:intergenic | 20.0% |
| !!! | TTCAATAATTAATTTTGCCT+TGG | - | chr3_4:66624407-66624426 | Msa0515390:CDS | 20.0% |
| !!! | GATTTTTTATACTTTCATAG+AGG | - | chr3_4:66624512-66624531 | Msa0515390:CDS | 20.0% |
| !!! | ATTGCAATAATTTTGACAAT+AGG | + | chr3_4:66624582-66624601 | None:intergenic | 20.0% |
| !!! | AAACATTTTTCATTTTGCTT+AGG | - | chr3_4:66624812-66624831 | Msa0515390:intron | 20.0% |
| !! | CTAGAAATTAATTGAAATGA+AGG | - | chr3_4:66624956-66624975 | Msa0515390:intron | 20.0% |
| !! | AATTAATTGAAATGAAGGAA+AGG | - | chr3_4:66624961-66624980 | Msa0515390:intron | 20.0% |
| !! | ATTAATTGAAATGAAGGAAA+GGG | - | chr3_4:66624962-66624981 | Msa0515390:intron | 20.0% |
| !! | TGAAATATGTAAATCATGAT+CGG | + | chr3_4:66625172-66625191 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTAAGAATTTGT+GGG | - | chr3_4:66625381-66625400 | Msa0515390:intron | 20.0% |
| !! | TTTATTCTAGTATCATCAAA+TGG | - | chr3_4:66625496-66625515 | Msa0515390:intron | 20.0% |
| !! | GAAAATTTACATACATATTG+TGG | - | chr3_4:66625635-66625654 | Msa0515390:CDS | 20.0% |
| !! | ACGTAAATTATTATAGAGAA+GGG | + | chr3_4:66624174-66624193 | None:intergenic | 20.0% |
| !!! | TTCAATAATTAATTTTGCCT+TGG | - | chr3_4:66624407-66624426 | Msa0515390:CDS | 20.0% |
| !!! | GATTTTTTATACTTTCATAG+AGG | - | chr3_4:66624512-66624531 | Msa0515390:CDS | 20.0% |
| !!! | ATTGCAATAATTTTGACAAT+AGG | + | chr3_4:66624582-66624601 | None:intergenic | 20.0% |
| !!! | AAACATTTTTCATTTTGCTT+AGG | - | chr3_4:66624812-66624831 | Msa0515390:intron | 20.0% |
| !! | CTAGAAATTAATTGAAATGA+AGG | - | chr3_4:66624956-66624975 | Msa0515390:intron | 20.0% |
| !! | AATTAATTGAAATGAAGGAA+AGG | - | chr3_4:66624961-66624980 | Msa0515390:intron | 20.0% |
| !! | ATTAATTGAAATGAAGGAAA+GGG | - | chr3_4:66624962-66624981 | Msa0515390:intron | 20.0% |
| !! | TGAAATATGTAAATCATGAT+CGG | + | chr3_4:66625172-66625191 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTAAGAATTTGT+GGG | - | chr3_4:66625381-66625400 | Msa0515390:intron | 20.0% |
| !! | TTTATTCTAGTATCATCAAA+TGG | - | chr3_4:66625496-66625515 | Msa0515390:intron | 20.0% |
| !! | GAAAATTTACATACATATTG+TGG | - | chr3_4:66625635-66625654 | Msa0515390:CDS | 20.0% |
| ! | AAATTATTATAGAGAAGGGA+GGG | + | chr3_4:66624170-66624189 | None:intergenic | 25.0% |
| ! | TAAATTATTATAGAGAAGGG+AGG | + | chr3_4:66624171-66624190 | None:intergenic | 25.0% |
| ! | CACGTAAATTATTATAGAGA+AGG | + | chr3_4:66624175-66624194 | None:intergenic | 25.0% |
| ! | TTCTCTTCAATCACAAAAAA+TGG | - | chr3_4:66624211-66624230 | Msa0515390:three_prime_UTR | 25.0% |
| ! | ACTTACATGATTAATTTCCA+AGG | + | chr3_4:66624427-66624446 | None:intergenic | 25.0% |
| ! | GAAAACTACTGTTTGTAAAT+AGG | - | chr3_4:66624455-66624474 | Msa0515390:CDS | 25.0% |
| ! | ATAATCATTTAATCCACTCA+AGG | + | chr3_4:66624875-66624894 | None:intergenic | 25.0% |
| ! | GGATTAAATGATTATTTGTC+CGG | - | chr3_4:66624880-66624899 | Msa0515390:intron | 25.0% |
| ! | TTAAATGTATGATAAGGCTA+TGG | + | chr3_4:66625020-66625039 | None:intergenic | 25.0% |
| ! | GAAATACTAGAAAATCCATT+TGG | + | chr3_4:66625087-66625106 | None:intergenic | 25.0% |
| ! | TCATCGATAGATTCAAAATA+TGG | - | chr3_4:66625274-66625293 | Msa0515390:intron | 25.0% |
| ! | TATGGAAAATCAATAAAACG+AGG | - | chr3_4:66625292-66625311 | Msa0515390:intron | 25.0% |
| ! | CACAAATTCTTAGAAAAATG+AGG | + | chr3_4:66625382-66625401 | None:intergenic | 25.0% |
| !!! | CTCATTTTTCTAAGAATTTG+TGG | - | chr3_4:66625380-66625399 | Msa0515390:intron | 25.0% |
| !!! | CATTTTTCTAAGAATTTGTG+GGG | - | chr3_4:66625382-66625401 | Msa0515390:intron | 25.0% |
| ! | GATGATACTAGAATAAATGA+TGG | + | chr3_4:66625493-66625512 | None:intergenic | 25.0% |
| ! | AAATTATTATAGAGAAGGGA+GGG | + | chr3_4:66624170-66624189 | None:intergenic | 25.0% |
| ! | TAAATTATTATAGAGAAGGG+AGG | + | chr3_4:66624171-66624190 | None:intergenic | 25.0% |
| ! | CACGTAAATTATTATAGAGA+AGG | + | chr3_4:66624175-66624194 | None:intergenic | 25.0% |
| ! | TTCTCTTCAATCACAAAAAA+TGG | - | chr3_4:66624211-66624230 | Msa0515390:three_prime_UTR | 25.0% |
| ! | ACTTACATGATTAATTTCCA+AGG | + | chr3_4:66624427-66624446 | None:intergenic | 25.0% |
| ! | GAAAACTACTGTTTGTAAAT+AGG | - | chr3_4:66624455-66624474 | Msa0515390:CDS | 25.0% |
| ! | ATAATCATTTAATCCACTCA+AGG | + | chr3_4:66624875-66624894 | None:intergenic | 25.0% |
| ! | GGATTAAATGATTATTTGTC+CGG | - | chr3_4:66624880-66624899 | Msa0515390:intron | 25.0% |
| ! | TTAAATGTATGATAAGGCTA+TGG | + | chr3_4:66625020-66625039 | None:intergenic | 25.0% |
| ! | GAAATACTAGAAAATCCATT+TGG | + | chr3_4:66625087-66625106 | None:intergenic | 25.0% |
| ! | TCATCGATAGATTCAAAATA+TGG | - | chr3_4:66625274-66625293 | Msa0515390:intron | 25.0% |
| ! | TATGGAAAATCAATAAAACG+AGG | - | chr3_4:66625292-66625311 | Msa0515390:intron | 25.0% |
| ! | CACAAATTCTTAGAAAAATG+AGG | + | chr3_4:66625382-66625401 | None:intergenic | 25.0% |
| !!! | CTCATTTTTCTAAGAATTTG+TGG | - | chr3_4:66625380-66625399 | Msa0515390:intron | 25.0% |
| !!! | CATTTTTCTAAGAATTTGTG+GGG | - | chr3_4:66625382-66625401 | Msa0515390:intron | 25.0% |
| ! | GATGATACTAGAATAAATGA+TGG | + | chr3_4:66625493-66625512 | None:intergenic | 25.0% |
| ! | AACTTTTGATCTAACTGACT+TGG | - | chr3_4:66624478-66624497 | Msa0515390:CDS | 30.0% |
| !! | TCTTATTTCTATCTCTCTCA+AGG | - | chr3_4:66624763-66624782 | Msa0515390:intron | 30.0% |
| TCTAAATCATCATGAACTAC+CGG | + | chr3_4:66624902-66624921 | None:intergenic | 30.0% | |
| CTGGAGAATGATATATCTAA+GGG | - | chr3_4:66624931-66624950 | Msa0515390:intron | 30.0% | |
| CATTGTCACAAACATTGAAA+AGG | - | chr3_4:66624992-66625011 | Msa0515390:intron | 30.0% | |
| ! | TCTCATTTTCTGTTTCCAAA+TGG | - | chr3_4:66625069-66625088 | Msa0515390:intron | 30.0% |
| AATATGTAAATCATGATCGG+AGG | + | chr3_4:66625169-66625188 | None:intergenic | 30.0% | |
| AATCTATCGATGATGTGTTT+CGG | + | chr3_4:66625267-66625286 | None:intergenic | 30.0% | |
| CATTGTAAGCATAACCAATA+TGG | + | chr3_4:66625453-66625472 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATGCTTACAA+TGG | - | chr3_4:66625451-66625470 | Msa0515390:intron | 30.0% |
| ATGCACTATCACACAAATAT+AGG | + | chr3_4:66625681-66625700 | None:intergenic | 30.0% | |
| ! | AACTTTTGATCTAACTGACT+TGG | - | chr3_4:66624478-66624497 | Msa0515390:CDS | 30.0% |
| !! | TCTTATTTCTATCTCTCTCA+AGG | - | chr3_4:66624763-66624782 | Msa0515390:intron | 30.0% |
| TCTAAATCATCATGAACTAC+CGG | + | chr3_4:66624902-66624921 | None:intergenic | 30.0% | |
| CTGGAGAATGATATATCTAA+GGG | - | chr3_4:66624931-66624950 | Msa0515390:intron | 30.0% | |
| CATTGTCACAAACATTGAAA+AGG | - | chr3_4:66624992-66625011 | Msa0515390:intron | 30.0% | |
| ! | TCTCATTTTCTGTTTCCAAA+TGG | - | chr3_4:66625069-66625088 | Msa0515390:intron | 30.0% |
| AATATGTAAATCATGATCGG+AGG | + | chr3_4:66625169-66625188 | None:intergenic | 30.0% | |
| AATCTATCGATGATGTGTTT+CGG | + | chr3_4:66625267-66625286 | None:intergenic | 30.0% | |
| CATTGTAAGCATAACCAATA+TGG | + | chr3_4:66625453-66625472 | None:intergenic | 30.0% | |
| ! | CATATTGGTTATGCTTACAA+TGG | - | chr3_4:66625451-66625470 | Msa0515390:intron | 30.0% |
| ATGCACTATCACACAAATAT+AGG | + | chr3_4:66625681-66625700 | None:intergenic | 30.0% | |
| TTGCAATGAGTAGTACTAGT+TGG | - | chr3_4:66624595-66624614 | Msa0515390:CDS | 35.0% | |
| !! | AGAGAAAATCAAGTGTTGGA+TGG | + | chr3_4:66624691-66624710 | None:intergenic | 35.0% |
| GAAGAGAGAAAATCAAGTGT+TGG | + | chr3_4:66624695-66624714 | None:intergenic | 35.0% | |
| !! | TGATAAGTTGATGATGTGAC+AGG | + | chr3_4:66624717-66624736 | None:intergenic | 35.0% |
| ATACACCTATTGGAATGCAT+AGG | - | chr3_4:66624789-66624808 | Msa0515390:intron | 35.0% | |
| TGTTTCCTATGCATTCCAAT+AGG | + | chr3_4:66624797-66624816 | None:intergenic | 35.0% | |
| CCTTAGATATATCATTCTCC+AGG | + | chr3_4:66624933-66624952 | None:intergenic | 35.0% | |
| CCTGGAGAATGATATATCTA+AGG | - | chr3_4:66624930-66624949 | Msa0515390:intron | 35.0% | |
| AAATCATGATCGGAGGAATT+AGG | + | chr3_4:66625162-66625181 | None:intergenic | 35.0% | |
| !!! | TACTGTGTTTTTTACAGCTG+CGG | - | chr3_4:66625205-66625224 | Msa0515390:intron | 35.0% |
| ATGTTGTATTTCACACGAGA+CGG | + | chr3_4:66625550-66625569 | None:intergenic | 35.0% | |
| TATCCCATTTCCACATTCTT+GGG | + | chr3_4:66625602-66625621 | None:intergenic | 35.0% | |
| ATATCCCATTTCCACATTCT+TGG | + | chr3_4:66625603-66625622 | None:intergenic | 35.0% | |
| TAATACTCACCAGCAACAAA+AGG | - | chr3_4:66625706-66625725 | Msa0515390:five_prime_UTR | 35.0% | |
| ! | AAGAATACACCTTTTGTTGC+TGG | + | chr3_4:66625718-66625737 | None:intergenic | 35.0% |
| TACCAAAGCAACAAAGATGT+TGG | - | chr3_4:66625739-66625758 | Msa0515390:five_prime_UTR | 35.0% | |
| ACCAAAGCAACAAAGATGTT+GGG | - | chr3_4:66625740-66625759 | Msa0515390:five_prime_UTR | 35.0% | |
| TTGCAATGAGTAGTACTAGT+TGG | - | chr3_4:66624595-66624614 | Msa0515390:CDS | 35.0% | |
| !! | AGAGAAAATCAAGTGTTGGA+TGG | + | chr3_4:66624691-66624710 | None:intergenic | 35.0% |
| GAAGAGAGAAAATCAAGTGT+TGG | + | chr3_4:66624695-66624714 | None:intergenic | 35.0% | |
| !! | TGATAAGTTGATGATGTGAC+AGG | + | chr3_4:66624717-66624736 | None:intergenic | 35.0% |
| ATACACCTATTGGAATGCAT+AGG | - | chr3_4:66624789-66624808 | Msa0515390:intron | 35.0% | |
| TGTTTCCTATGCATTCCAAT+AGG | + | chr3_4:66624797-66624816 | None:intergenic | 35.0% | |
| CCTTAGATATATCATTCTCC+AGG | + | chr3_4:66624933-66624952 | None:intergenic | 35.0% | |
| CCTGGAGAATGATATATCTA+AGG | - | chr3_4:66624930-66624949 | Msa0515390:intron | 35.0% | |
| AAATCATGATCGGAGGAATT+AGG | + | chr3_4:66625162-66625181 | None:intergenic | 35.0% | |
| !!! | TACTGTGTTTTTTACAGCTG+CGG | - | chr3_4:66625205-66625224 | Msa0515390:intron | 35.0% |
| ATGTTGTATTTCACACGAGA+CGG | + | chr3_4:66625550-66625569 | None:intergenic | 35.0% | |
| TATCCCATTTCCACATTCTT+GGG | + | chr3_4:66625602-66625621 | None:intergenic | 35.0% | |
| ATATCCCATTTCCACATTCT+TGG | + | chr3_4:66625603-66625622 | None:intergenic | 35.0% | |
| TAATACTCACCAGCAACAAA+AGG | - | chr3_4:66625706-66625725 | Msa0515390:five_prime_UTR | 35.0% | |
| ! | AAGAATACACCTTTTGTTGC+TGG | + | chr3_4:66625718-66625737 | None:intergenic | 35.0% |
| TACCAAAGCAACAAAGATGT+TGG | - | chr3_4:66625739-66625758 | Msa0515390:five_prime_UTR | 35.0% | |
| ACCAAAGCAACAAAGATGTT+GGG | - | chr3_4:66625740-66625759 | Msa0515390:five_prime_UTR | 35.0% | |
| AAGAAGAGGAGGATGACAAA+GGG | + | chr3_4:66624277-66624296 | None:intergenic | 40.0% | |
| AGAAGTAGTAGAAGAAGAGG+AGG | + | chr3_4:66624288-66624307 | None:intergenic | 40.0% | |
| CCTCTTCTTCTACTACTTCT+CGG | - | chr3_4:66624288-66624307 | Msa0515390:CDS | 40.0% | |
| TTTGCAACCAACAAAGAGAG+TGG | + | chr3_4:66624348-66624367 | None:intergenic | 40.0% | |
| CTCAAGGTGTATACACCTAT+TGG | - | chr3_4:66624779-66624798 | Msa0515390:intron | 40.0% | |
| TGCTTAGGTTTCATTCTCAG+AGG | - | chr3_4:66624827-66624846 | Msa0515390:intron | 40.0% | |
| GCTTAGGTTTCATTCTCAGA+GGG | - | chr3_4:66624828-66624847 | Msa0515390:intron | 40.0% | |
| !! | CAGTAAAAAAGCACCTTGAG+TGG | - | chr3_4:66624859-66624878 | Msa0515390:intron | 40.0% |
| ATGATTTAGATGCAAGAGCC+TGG | - | chr3_4:66624912-66624931 | Msa0515390:intron | 40.0% | |
| GGTTTGATGAGGATAGGTTA+AGG | + | chr3_4:66625246-66625265 | None:intergenic | 40.0% | |
| ! | TGTTTCGGTTTGATGAGGAT+AGG | + | chr3_4:66625252-66625271 | None:intergenic | 40.0% |
| ! | TGATGTGTTTCGGTTTGATG+AGG | + | chr3_4:66625257-66625276 | None:intergenic | 40.0% |
| ! | TCGTCAACATTGATGATAGC+AGG | - | chr3_4:66625326-66625345 | Msa0515390:intron | 40.0% |
| TCTTCCCAAGAATGTGGAAA+TGG | - | chr3_4:66625595-66625614 | Msa0515390:CDS | 40.0% | |
| CTTCCCAAGAATGTGGAAAT+GGG | - | chr3_4:66625596-66625615 | Msa0515390:CDS | 40.0% | |
| TGGAAATGGGATATCTGTCT+TGG | - | chr3_4:66625609-66625628 | Msa0515390:CDS | 40.0% | |
| ! | TCCCAACATCTTTGTTGCTT+TGG | + | chr3_4:66625744-66625763 | None:intergenic | 40.0% |
| AAGAAGAGGAGGATGACAAA+GGG | + | chr3_4:66624277-66624296 | None:intergenic | 40.0% | |
| AGAAGTAGTAGAAGAAGAGG+AGG | + | chr3_4:66624288-66624307 | None:intergenic | 40.0% | |
| CCTCTTCTTCTACTACTTCT+CGG | - | chr3_4:66624288-66624307 | Msa0515390:CDS | 40.0% | |
| TTTGCAACCAACAAAGAGAG+TGG | + | chr3_4:66624348-66624367 | None:intergenic | 40.0% | |
| CTCAAGGTGTATACACCTAT+TGG | - | chr3_4:66624779-66624798 | Msa0515390:intron | 40.0% | |
| TGCTTAGGTTTCATTCTCAG+AGG | - | chr3_4:66624827-66624846 | Msa0515390:intron | 40.0% | |
| GCTTAGGTTTCATTCTCAGA+GGG | - | chr3_4:66624828-66624847 | Msa0515390:intron | 40.0% | |
| !! | CAGTAAAAAAGCACCTTGAG+TGG | - | chr3_4:66624859-66624878 | Msa0515390:intron | 40.0% |
| ATGATTTAGATGCAAGAGCC+TGG | - | chr3_4:66624912-66624931 | Msa0515390:intron | 40.0% | |
| GGTTTGATGAGGATAGGTTA+AGG | + | chr3_4:66625246-66625265 | None:intergenic | 40.0% | |
| ! | TGTTTCGGTTTGATGAGGAT+AGG | + | chr3_4:66625252-66625271 | None:intergenic | 40.0% |
| ! | TGATGTGTTTCGGTTTGATG+AGG | + | chr3_4:66625257-66625276 | None:intergenic | 40.0% |
| ! | TCGTCAACATTGATGATAGC+AGG | - | chr3_4:66625326-66625345 | Msa0515390:intron | 40.0% |
| TCTTCCCAAGAATGTGGAAA+TGG | - | chr3_4:66625595-66625614 | Msa0515390:CDS | 40.0% | |
| CTTCCCAAGAATGTGGAAAT+GGG | - | chr3_4:66625596-66625615 | Msa0515390:CDS | 40.0% | |
| TGGAAATGGGATATCTGTCT+TGG | - | chr3_4:66625609-66625628 | Msa0515390:CDS | 40.0% | |
| ! | TCCCAACATCTTTGTTGCTT+TGG | + | chr3_4:66625744-66625763 | None:intergenic | 40.0% |
| GAAGAAGAGGAGGATGACAA+AGG | + | chr3_4:66624278-66624297 | None:intergenic | 45.0% | |
| CCGAGAAGTAGTAGAAGAAG+AGG | + | chr3_4:66624291-66624310 | None:intergenic | 45.0% | |
| TTCTCGGACTCGTAGTCAAA+GGG | - | chr3_4:66624304-66624323 | Msa0515390:CDS | 45.0% | |
| AGGTTCACCACTCTCTTTGT+TGG | - | chr3_4:66624338-66624357 | Msa0515390:CDS | 45.0% | |
| TGATGATAGCAGGTTTGCAC+AGG | - | chr3_4:66625336-66625355 | Msa0515390:intron | 45.0% | |
| ! | CGCAAGTGTTGCAACCATAT+TGG | - | chr3_4:66625436-66625455 | Msa0515390:intron | 45.0% |
| CCACATTCTTGGGAAGATGA+TGG | + | chr3_4:66625592-66625611 | None:intergenic | 45.0% | |
| CCATCATCTTCCCAAGAATG+TGG | - | chr3_4:66625589-66625608 | Msa0515390:CDS | 45.0% | |
| GAAGAAGAGGAGGATGACAA+AGG | + | chr3_4:66624278-66624297 | None:intergenic | 45.0% | |
| CCGAGAAGTAGTAGAAGAAG+AGG | + | chr3_4:66624291-66624310 | None:intergenic | 45.0% | |
| TTCTCGGACTCGTAGTCAAA+GGG | - | chr3_4:66624304-66624323 | Msa0515390:CDS | 45.0% | |
| AGGTTCACCACTCTCTTTGT+TGG | - | chr3_4:66624338-66624357 | Msa0515390:CDS | 45.0% | |
| TGATGATAGCAGGTTTGCAC+AGG | - | chr3_4:66625336-66625355 | Msa0515390:intron | 45.0% | |
| ! | CGCAAGTGTTGCAACCATAT+TGG | - | chr3_4:66625436-66625455 | Msa0515390:intron | 45.0% |
| CCACATTCTTGGGAAGATGA+TGG | + | chr3_4:66625592-66625611 | None:intergenic | 45.0% | |
| CCATCATCTTCCCAAGAATG+TGG | - | chr3_4:66625589-66625608 | Msa0515390:CDS | 45.0% | |
| CTTCTCGGACTCGTAGTCAA+AGG | - | chr3_4:66624303-66624322 | Msa0515390:CDS | 50.0% | |
| AGAGAGTGGTGAACCTGTAG+CGG | + | chr3_4:66624334-66624353 | None:intergenic | 50.0% | |
| ! | TTTTACAGCTGCGGTTCGTG+CGG | - | chr3_4:66625214-66625233 | Msa0515390:intron | 50.0% |
| GGTGCTTCAGTTGAAGGAGA+TGG | + | chr3_4:66625529-66625548 | None:intergenic | 50.0% | |
| ! | TTGGGAAGATGATGGCTGCA+AGG | + | chr3_4:66625584-66625603 | None:intergenic | 50.0% |
| CTTCTCGGACTCGTAGTCAA+AGG | - | chr3_4:66624303-66624322 | Msa0515390:CDS | 50.0% | |
| AGAGAGTGGTGAACCTGTAG+CGG | + | chr3_4:66624334-66624353 | None:intergenic | 50.0% | |
| ! | TTTTACAGCTGCGGTTCGTG+CGG | - | chr3_4:66625214-66625233 | Msa0515390:intron | 50.0% |
| GGTGCTTCAGTTGAAGGAGA+TGG | + | chr3_4:66625529-66625548 | None:intergenic | 50.0% | |
| ! | TTGGGAAGATGATGGCTGCA+AGG | + | chr3_4:66625584-66625603 | None:intergenic | 50.0% |
| GTCAAAGGGATGTCCGCTAC+AGG | - | chr3_4:66624318-66624337 | Msa0515390:CDS | 55.0% | |
| CGAGACGGTGCTTCAGTTGA+AGG | + | chr3_4:66625535-66625554 | None:intergenic | 55.0% | |
| GTCAAAGGGATGTCCGCTAC+AGG | - | chr3_4:66624318-66624337 | Msa0515390:CDS | 55.0% | |
| CGAGACGGTGCTTCAGTTGA+AGG | + | chr3_4:66625535-66625554 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 66624157 | 66625764 | 66624157 | ID=Msa0515390;Name=Msa0515390 |
| chr3_4 | mRNA | 66624157 | 66625764 | 66624157 | ID=Msa0515390-mRNA-1;Parent=Msa0515390;Name=Msa0515390-mRNA-1;_AED=0.41;_eAED=0.41;_QI=73|1|1|1|1|1|2|128|174 |
| chr3_4 | exon | 66624157 | 66624699 | 66624157 | ID=Msa0515390-mRNA-1:exon:17203;Parent=Msa0515390-mRNA-1 |
| chr3_4 | exon | 66625582 | 66625764 | 66625582 | ID=Msa0515390-mRNA-1:exon:17202;Parent=Msa0515390-mRNA-1 |
| chr3_4 | five_prime_UTR | 66625692 | 66625764 | 66625692 | ID=Msa0515390-mRNA-1:five_prime_utr;Parent=Msa0515390-mRNA-1 |
| chr3_4 | CDS | 66625582 | 66625691 | 66625582 | ID=Msa0515390-mRNA-1:cds;Parent=Msa0515390-mRNA-1 |
| chr3_4 | CDS | 66624285 | 66624699 | 66624285 | ID=Msa0515390-mRNA-1:cds;Parent=Msa0515390-mRNA-1 |
| chr3_4 | three_prime_UTR | 66624157 | 66624284 | 66624157 | ID=Msa0515390-mRNA-1:three_prime_utr;Parent=Msa0515390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
