Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469880 | AES72274.2 | 97.423 | 582 | 15 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469880 | sp|Q8VYW6|GAGT1_ARATH | 63.731 | 579 | 200 | 5 | 5 | 581 | 1 | 571 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469880 | G7J4F1 | 97.423 | 582 | 15 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374230 | Msa0469880 | 0.835471 | 1.646223e-56 | -8.615850e-47 |
| Msa0469880 | Msa1357550 | 0.838203 | 3.306865e-57 | -8.615850e-47 |
| Msa0301260 | Msa0469880 | -0.807307 | 5.388794e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469880 | MtrunA17_Chr3g0124611 | 97.409 | 579 | 15 | 0 | 4 | 582 | 9 | 587 | 0.0 | 1162 |
| Msa0469880 | MtrunA17_Chr3g0106781 | 75.045 | 561 | 139 | 1 | 22 | 582 | 18 | 577 | 0.0 | 855 |
| Msa0469880 | MtrunA17_Chr6g0487461 | 52.028 | 567 | 259 | 4 | 28 | 582 | 58 | 623 | 0.0 | 551 |
| Msa0469880 | MtrunA17_Chr5g0438351 | 86.792 | 106 | 14 | 0 | 11 | 116 | 21 | 126 | 1.31e-39 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469880 | AT4G39640.1 | 63.731 | 579 | 200 | 5 | 5 | 581 | 1 | 571 | 0.0 | 748 |
| Msa0469880 | AT4G39640.2 | 63.731 | 579 | 200 | 5 | 5 | 581 | 1 | 571 | 0.0 | 748 |
| Msa0469880 | AT4G39650.1 | 63.652 | 586 | 199 | 7 | 1 | 581 | 1 | 577 | 0.0 | 728 |
| Msa0469880 | AT4G29210.1 | 48.947 | 570 | 269 | 6 | 32 | 582 | 71 | 637 | 0.0 | 557 |
| Msa0469880 | AT4G29210.2 | 50.935 | 428 | 206 | 4 | 32 | 456 | 71 | 497 | 8.22e-156 | 456 |
| Msa0469880 | AT1G69820.1 | 71.111 | 225 | 64 | 1 | 286 | 509 | 1 | 225 | 6.20e-114 | 338 |
Find 168 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTCCTTCAGGCCTTTC+TGG | 0.074565 | 3_3:+71908655 | Msa0469880:CDS |
| TCCTACACCTTTATTTATTT+TGG | 0.084530 | 3_3:-71910202 | None:intergenic |
| CATCTTAATTCTTTATAATA+TGG | 0.189228 | 3_3:+71906876 | Msa0469880:exon |
| GCTTTGTATGGTGGAATAAT+TGG | 0.207093 | 3_3:+71908117 | Msa0469880:CDS |
| AATCATTTATCAAAGTAAAA+TGG | 0.242721 | 3_3:+71910588 | Msa0469880:three_prime_UTR |
| TTGAACTTTCTGCTAATATC+AGG | 0.251199 | 3_3:+71910091 | Msa0469880:CDS |
| TGTGGCTGCTGCTCTTTGTT+TGG | 0.260299 | 3_3:+71907101 | Msa0469880:CDS |
| TGTTGTAACCTGTATATAAT+TGG | 0.261694 | 3_3:+71906819 | None:intergenic |
| CATGTCCTTCAGAGCCTTGC+TGG | 0.265745 | 3_3:+71910135 | Msa0469880:CDS |
| GCAGGAAAACCACCCTTTCT+TGG | 0.267405 | 3_3:-71910246 | None:intergenic |
| GCGGTGCCTTTATGCTTCTT+AGG | 0.281278 | 3_3:+71907157 | Msa0469880:CDS |
| TCAAAGCTTCAATTTCTCTA+TGG | 0.284149 | 3_3:-71908690 | None:intergenic |
| TCAGTTATATTTACAAAATC+AGG | 0.292693 | 3_3:-71908748 | None:intergenic |
| ATGTGGCTTGATGTGTATTT+TGG | 0.296049 | 3_3:+71910480 | Msa0469880:three_prime_UTR |
| CCTCCTCTTTGTTTCCAGTT+TGG | 0.297674 | 3_3:+71906933 | Msa0469880:CDS |
| TGGCTGCAGTTATGTTATTA+TGG | 0.301381 | 3_3:+71906896 | Msa0469880:CDS |
| CTTGGTATGCCTCCTCCTTC+AGG | 0.309472 | 3_3:+71908258 | Msa0469880:CDS |
| CTAAGAGCAATTGCAAAGTT+TGG | 0.312938 | 3_3:+71908087 | Msa0469880:CDS |
| GTGGCTGCTGCTCTTTGTTT+GGG | 0.314878 | 3_3:+71907102 | Msa0469880:CDS |
| ACTTATGATTCAAGTCATTA+TGG | 0.319436 | 3_3:+71908838 | Msa0469880:CDS |
| GGACATGGCCCTTACTTCTA+AGG | 0.324451 | 3_3:-71910119 | None:intergenic |
| TCAGGCCTTTCTGGTTCCCT+TGG | 0.331021 | 3_3:+71908664 | Msa0469880:CDS |
| CTTCCCCGGCACGACGAAAT+TGG | 0.336481 | 3_3:-71909172 | None:intergenic |
| GGAGCAGTTACAGAAGAAAA+AGG | 0.352470 | 3_3:-71909429 | None:intergenic |
| GATCGTCGATGCTCGAAGAT+TGG | 0.359812 | 3_3:+71907036 | Msa0469880:CDS |
| GGCCTCTCGGTAGCAGTTCC+AGG | 0.369742 | 3_3:+71907823 | Msa0469880:CDS |
| CAGGCCTTTCTGGTTCCCTT+GGG | 0.372651 | 3_3:+71908665 | Msa0469880:CDS |
| ACTACAGTAAATTCGTATTT+CGG | 0.375583 | 3_3:+71909042 | Msa0469880:CDS |
| CCAAGAAAATCTATAGATAT+AGG | 0.377085 | 3_3:-71908225 | None:intergenic |
| TTTCTTCTGTAACTGCTCCT+AGG | 0.377805 | 3_3:+71909433 | Msa0469880:CDS |
| ATCGTCGATGCTCGAAGATT+GGG | 0.379068 | 3_3:+71907037 | Msa0469880:CDS |
| GAACATTCCAAAATAAATAA+AGG | 0.380999 | 3_3:+71910195 | Msa0469880:CDS |
| CCTGCCAATTTCGTCGTGCC+GGG | 0.393581 | 3_3:+71909168 | Msa0469880:CDS |
| GTTAAAGATGTTCAGAAGGC+TGG | 0.400636 | 3_3:+71908150 | Msa0469880:CDS |
| TCCTGCCAATTTCGTCGTGC+CGG | 0.409726 | 3_3:+71909167 | Msa0469880:CDS |
| ATGTGGTATATTATGAGAAC+TGG | 0.410439 | 3_3:+71910046 | Msa0469880:CDS |
| GCACAATATGAGCTTCCTTC+AGG | 0.410702 | 3_3:+71908646 | Msa0469880:CDS |
| GGCAGAAGCAGATGCCAAAC+TGG | 0.410790 | 3_3:-71906947 | None:intergenic |
| ATGTACTGTGGCTCCACATA+TGG | 0.411147 | 3_3:-71910533 | None:intergenic |
| TGAAGGCCTGCTAGTTCTCC+TGG | 0.418756 | 3_3:-71907841 | None:intergenic |
| AGTTCAGCTTCAAGTGGTAT+TGG | 0.425763 | 3_3:+71907132 | Msa0469880:CDS |
| TTCTTCTGTAACTGCTCCTA+GGG | 0.425863 | 3_3:+71909434 | Msa0469880:CDS |
| ATGCTTCTTAGGTTAGCTAA+TGG | 0.427061 | 3_3:+71907168 | Msa0469880:CDS |
| ACCCTTTCTTGGATCACTTA+CGG | 0.430481 | 3_3:-71910235 | None:intergenic |
| CTCGGGACTCCAGATCAATT+AGG | 0.436728 | 3_3:-71910364 | None:intergenic |
| AGCTAACCTAAGAAGCATAA+AGG | 0.439391 | 3_3:-71907163 | None:intergenic |
| TTTCTTGGATTAAAGATCCT+TGG | 0.439838 | 3_3:+71908240 | Msa0469880:CDS |
| ATCAGGAGTCCTAATTGATC+TGG | 0.440048 | 3_3:+71910355 | Msa0469880:three_prime_UTR |
| CAGGGAAAGCCTTAGAAGTA+AGG | 0.450851 | 3_3:+71910110 | Msa0469880:CDS |
| TTTGGTCCACAAGCTTTGTA+TGG | 0.452119 | 3_3:+71908105 | Msa0469880:CDS |
| CTGTGATTCTTGCTAGTAGA+GGG | 0.452501 | 3_3:+71907917 | Msa0469880:CDS |
| TTCTCATAATATACCACATT+AGG | 0.453122 | 3_3:-71910042 | None:intergenic |
| GAATCACTTTGTCAAAGGAA+TGG | 0.453749 | 3_3:+71909404 | Msa0469880:CDS |
| AGCAGGCGGTCGAACATCCT+TGG | 0.454513 | 3_3:-71909145 | None:intergenic |
| TTTCAACACTTGAGCAAACT+TGG | 0.457205 | 3_3:-71908794 | None:intergenic |
| TTGAGTACTATTCCTGTACT+TGG | 0.467003 | 3_3:-71909081 | None:intergenic |
| TGCTCCTAGGGTCTATCATC+AGG | 0.468787 | 3_3:+71909446 | Msa0469880:CDS |
| TTTCAGTGAGAATGAATCTC+GGG | 0.469577 | 3_3:+71908722 | Msa0469880:CDS |
| CAACTTACCAGCATCATTTG+AGG | 0.472103 | 3_3:-71908285 | None:intergenic |
| AAAGTACACTGTTAAACAAA+AGG | 0.472586 | 3_3:+71908200 | Msa0469880:CDS |
| ACGACGAAATTGGCAGGAGC+AGG | 0.472614 | 3_3:-71909162 | None:intergenic |
| CAGTTAAGGTCGAATAGATC+AGG | 0.479105 | 3_3:+71910338 | Msa0469880:three_prime_UTR |
| AACACTACTTTGAAGGCAAA+TGG | 0.481370 | 3_3:+71907799 | Msa0469880:CDS |
| TCCTTCAGAGCCTTGCTGGT+GGG | 0.483076 | 3_3:+71910139 | Msa0469880:CDS |
| TGGTGGCAACACTACTTTGA+AGG | 0.485618 | 3_3:+71907792 | Msa0469880:CDS |
| CGAATTTACTGTAGTGGTCA+TGG | 0.494343 | 3_3:-71909034 | None:intergenic |
| AGGGAAGTGAAAGCAGTAGT+AGG | 0.496539 | 3_3:+71909333 | Msa0469880:CDS |
| GAGAACTGGACAACAGTGAC+CGG | 0.499140 | 3_3:+71910060 | Msa0469880:CDS |
| TCCATCTGCATGTGAAGGTA+TGG | 0.508355 | 3_3:-71907952 | None:intergenic |
| CCCGGCACGACGAAATTGGC+AGG | 0.508773 | 3_3:-71909168 | None:intergenic |
| TGGTCAATGAGCTTCAGTTA+AGG | 0.509429 | 3_3:+71910324 | Msa0469880:three_prime_UTR |
| CAATTTCTCTATGGATCCCA+AGG | 0.509773 | 3_3:-71908681 | None:intergenic |
| TTTGATCGCTTTCATTAACT+AGG | 0.510500 | 3_3:+71910387 | Msa0469880:three_prime_UTR |
| GAAGTAATCATTGCTCATCA+TGG | 0.511179 | 3_3:+71906997 | Msa0469880:CDS |
| ATATCTCACTGAAACTTAAG+TGG | 0.514455 | 3_3:+71910304 | Msa0469880:three_prime_UTR |
| GTACAAGACCAATTATATAC+AGG | 0.516352 | 3_3:-71906827 | None:intergenic |
| GATGATAATGGTCTCTTCCC+CGG | 0.518164 | 3_3:-71909186 | None:intergenic |
| TAGCAGGCCTTCACAAGGCA+TGG | 0.519010 | 3_3:+71907851 | Msa0469880:CDS |
| CTTCGAGCATCGACGATCAT+CGG | 0.519186 | 3_3:-71907031 | None:intergenic |
| TTAAGTTTCAGTGAGATATG+AGG | 0.519829 | 3_3:-71910300 | None:intergenic |
| TCCCACCAGCAAGGCTCTGA+AGG | 0.522177 | 3_3:-71910140 | None:intergenic |
| GTCACCAACTATTGTTCTCA+AGG | 0.525838 | 3_3:+71909212 | Msa0469880:CDS |
| ACATGCAGTGGATGCAGCTG+TGG | 0.526599 | 3_3:+71907083 | Msa0469880:CDS |
| GGCCGTAAGTGATCCAAGAA+AGG | 0.530949 | 3_3:+71910233 | Msa0469880:CDS |
| GTCCTTCAGAGCCTTGCTGG+TGG | 0.531940 | 3_3:+71910138 | Msa0469880:CDS |
| TTTAGTTAAAGATGTTCAGA+AGG | 0.532577 | 3_3:+71908146 | Msa0469880:CDS |
| GTTGGTGACATGGATGATAA+TGG | 0.536093 | 3_3:-71909198 | None:intergenic |
| ATATGTTATAATAAGAAACT+AGG | 0.536973 | 3_3:+71908057 | Msa0469880:CDS |
| GGGATGGATGTTATCCAAGA+AGG | 0.538671 | 3_3:+71907057 | Msa0469880:CDS |
| TGAACTTTCTGCTAATATCA+GGG | 0.539929 | 3_3:+71910092 | Msa0469880:CDS |
| TCAGCTTCAAGTGGTATTGG+TGG | 0.540011 | 3_3:+71907135 | Msa0469880:CDS |
| GCTTCAAGTGGTATTGGTGG+CGG | 0.540106 | 3_3:+71907138 | Msa0469880:CDS |
| TTAATGAAAGCGATCAAACT+CGG | 0.540330 | 3_3:-71910382 | None:intergenic |
| CATATTATAAAGAATTAAGA+TGG | 0.547738 | 3_3:-71906875 | None:intergenic |
| AACAACATGGAAAGATTCCA+TGG | 0.548685 | 3_3:+71907875 | Msa0469880:CDS |
| ATTCCACCATACAAAGCTTG+TGG | 0.553323 | 3_3:-71908111 | None:intergenic |
| AGGTGGACCTCAAATGATGC+TGG | 0.553365 | 3_3:+71908278 | Msa0469880:CDS |
| GGCATTACAAGTCTATTCCA+TGG | 0.553522 | 3_3:-71907892 | None:intergenic |
| GATTATTGCTGCAACTTCAG+AGG | 0.553592 | 3_3:+71909374 | Msa0469880:CDS |
| AGAATTGAAATAATTAAATG+TGG | 0.555500 | 3_3:+71910463 | Msa0469880:three_prime_UTR |
| TGCTCCTCTTCATGCTTCCA+AGG | 0.556551 | 3_3:+71907221 | Msa0469880:CDS |
| GTTGTTCCCATGCCTTGTGA+AGG | 0.557711 | 3_3:-71907858 | None:intergenic |
| GCAGTTCCAGGAGAACTAGC+AGG | 0.560431 | 3_3:+71907835 | Msa0469880:CDS |
| GAAGGCAAATGGTGGCCTCT+CGG | 0.562410 | 3_3:+71907810 | Msa0469880:CDS |
| GGCTGGAGGGATATTGACAT+TGG | 0.564181 | 3_3:+71908167 | Msa0469880:CDS |
| AGGGAAAGCCTTAGAAGTAA+GGG | 0.565321 | 3_3:+71910111 | Msa0469880:CDS |
| GCCGTAAGTGATCCAAGAAA+GGG | 0.566039 | 3_3:+71910234 | Msa0469880:CDS |
| ACAATACTTTCACCAAGTAC+AGG | 0.566632 | 3_3:+71909069 | Msa0469880:CDS |
| CAGCAAGGCTCTGAAGGACA+TGG | 0.566832 | 3_3:-71910134 | None:intergenic |
| TCAAATATATTGAATGACAT+TGG | 0.568464 | 3_3:+71907985 | Msa0469880:CDS |
| TCTGTGATTCTTGCTAGTAG+AGG | 0.569004 | 3_3:+71907916 | Msa0469880:CDS |
| GGTCCACAAGCTTTGTATGG+TGG | 0.569960 | 3_3:+71908108 | Msa0469880:CDS |
| AGAACCTTGAGAACAATAGT+TGG | 0.571389 | 3_3:-71909216 | None:intergenic |
| TGGAATCAGATAAATGATCA+TGG | 0.571447 | 3_3:+71908967 | Msa0469880:CDS |
| AATAGTACTCAACAATGAGA+TGG | 0.573475 | 3_3:+71909092 | Msa0469880:CDS |
| AAAGCAGTAGTAGGTGCAAG+TGG | 0.574642 | 3_3:+71909342 | Msa0469880:CDS |
| GGATCCCAAGGGAACCAGAA+AGG | 0.575413 | 3_3:-71908669 | None:intergenic |
| GGATGGATGTTATCCAAGAA+GGG | 0.577595 | 3_3:+71907058 | Msa0469880:CDS |
| ACCATACCTTCACATGCAGA+TGG | 0.585318 | 3_3:+71907951 | Msa0469880:CDS |
| CATGGAAAACTCTTGAAAGC+AGG | 0.586551 | 3_3:+71908030 | Msa0469880:CDS |
| ATCATTTGAGGTCCACCTGA+AGG | 0.586693 | 3_3:-71908273 | None:intergenic |
| TCTTGAAATACAGCTACTAG+TGG | 0.586782 | 3_3:-71910443 | None:intergenic |
| AGAACTGGACAACAGTGACC+GGG | 0.586985 | 3_3:+71910061 | Msa0469880:CDS |
| AGAAAGTTCAAAGTGGTCCC+CGG | 0.588081 | 3_3:-71910079 | None:intergenic |
| AGCAGTTTCTCTCATATCAA+AGG | 0.589334 | 3_3:-71907202 | None:intergenic |
| GGTATGCCTCCTCCTTCAGG+TGG | 0.590621 | 3_3:+71908261 | Msa0469880:CDS |
| TACAGCTACTAGTGGGACCA+AGG | 0.592143 | 3_3:-71910435 | None:intergenic |
| TAATGAAAGCGATCAAACTC+GGG | 0.593238 | 3_3:-71910381 | None:intergenic |
| ACGAAATTGGCAGGAGCAGG+CGG | 0.593667 | 3_3:-71909159 | None:intergenic |
| GACATATTGTCCCACCAGCA+AGG | 0.600088 | 3_3:-71910149 | None:intergenic |
| TGAGGTCCACCTGAAGGAGG+AGG | 0.600797 | 3_3:-71908267 | None:intergenic |
| CTGCCAATTTCGTCGTGCCG+GGG | 0.602376 | 3_3:+71909169 | Msa0469880:CDS |
| AACAAAGAGGAGGCATGCGA+TGG | 0.603767 | 3_3:-71906923 | None:intergenic |
| AAAGATGTTCAGAAGGCTGG+AGG | 0.604111 | 3_3:+71908153 | Msa0469880:CDS |
| GTTAGCTAATGGTGTAGCAA+AGG | 0.604530 | 3_3:+71907179 | Msa0469880:CDS |
| TCCAAAATAAATAAAGGTGT+AGG | 0.605868 | 3_3:+71910201 | Msa0469880:CDS |
| AGTAGTGTATTTGCACCACA+TGG | 0.606382 | 3_3:+71908012 | Msa0469880:CDS |
| AGGGAACCAGAAAGGCCTGA+AGG | 0.606461 | 3_3:-71908661 | None:intergenic |
| AGCAGGCCTTCACAAGGCAT+GGG | 0.606775 | 3_3:+71907852 | Msa0469880:CDS |
| CATACCTGATGATAGACCCT+AGG | 0.617223 | 3_3:-71909450 | None:intergenic |
| GAAATACGAATTTACTGTAG+TGG | 0.620251 | 3_3:-71909040 | None:intergenic |
| TATGATTCAAGTCATTATGG+TGG | 0.621095 | 3_3:+71908841 | Msa0469880:CDS |
| TAAAGGTGTAGGAAAGCTTG+TGG | 0.635981 | 3_3:+71910212 | Msa0469880:CDS |
| CACAAGGCATGGGAACAACA+TGG | 0.636359 | 3_3:+71907862 | Msa0469880:CDS |
| GTTGTCAGTTCAGCTTCAAG+TGG | 0.641203 | 3_3:+71907126 | Msa0469880:CDS |
| AATTTCTCTATGGATCCCAA+GGG | 0.644550 | 3_3:-71908680 | None:intergenic |
| CTACTAGCAAGAATCACAGA+TGG | 0.645572 | 3_3:-71907913 | None:intergenic |
| ACAGCTACTAGTGGGACCAA+GGG | 0.652254 | 3_3:-71910434 | None:intergenic |
| ATTTGAGGTCCACCTGAAGG+AGG | 0.652562 | 3_3:-71908270 | None:intergenic |
| AGAACTAGCAGGCCTTCACA+AGG | 0.652770 | 3_3:+71907846 | Msa0469880:CDS |
| CTGAAGGAGGAGGCATACCA+AGG | 0.655629 | 3_3:-71908257 | None:intergenic |
| CTTGAAATACAGCTACTAGT+GGG | 0.656621 | 3_3:-71910442 | None:intergenic |
| AGTACCTTGGAAGCATGAAG+AGG | 0.656955 | 3_3:-71907225 | None:intergenic |
| AAGATGTTCAGAAGGCTGGA+GGG | 0.658153 | 3_3:+71908154 | Msa0469880:CDS |
| ATGCCAAACTGGAAACAAAG+AGG | 0.660398 | 3_3:-71906936 | None:intergenic |
| GCAGTAGTAGGTGCAAGTGG+AGG | 0.669154 | 3_3:+71909345 | Msa0469880:CDS |
| TCGATGCTCGAAGATTGGGA+TGG | 0.670453 | 3_3:+71907041 | Msa0469880:CDS |
| ACTACTTTGAAGGCAAATGG+TGG | 0.671606 | 3_3:+71907802 | Msa0469880:CDS |
| GATGGATGTTATCCAAGAAG+GGG | 0.675440 | 3_3:+71907059 | Msa0469880:CDS |
| TTCAGTGAGAATGAATCTCG+GGG | 0.675465 | 3_3:+71908723 | Msa0469880:CDS |
| CCAAACTGGAAACAAAGAGG+AGG | 0.676783 | 3_3:-71906933 | None:intergenic |
| TATGCAGCTGATACCTAATG+TGG | 0.679757 | 3_3:+71910029 | Msa0469880:intron |
| GAGAACAATAGTTGGTGACA+TGG | 0.682147 | 3_3:-71909208 | None:intergenic |
| TATTAGCAGAAAGTTCAAAG+TGG | 0.683177 | 3_3:-71910086 | None:intergenic |
| GTAAGTGATCCAAGAAAGGG+TGG | 0.686908 | 3_3:+71910237 | Msa0469880:CDS |
| CTCCTGGAACTGCTACCGAG+AGG | 0.707943 | 3_3:-71907825 | None:intergenic |
| ATGGATGTTATCCAAGAAGG+GGG | 0.708511 | 3_3:+71907060 | Msa0469880:CDS |
| GAACTGGACAACAGTGACCG+GGG | 0.715377 | 3_3:+71910062 | Msa0469880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTGTATATAAATAATTT+AGG | - | chr3_3:71909773-71909792 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAAAATGATCAA+TGG | - | chr3_3:71909910-71909929 | None:intergenic | 10.0% |
| !! | CATATTATAAAGAATTAAGA+TGG | - | chr3_3:71906878-71906897 | None:intergenic | 15.0% |
| !! | CATCTTAATTCTTTATAATA+TGG | + | chr3_3:71906876-71906895 | Msa0469880:exon | 15.0% |
| !! | ATATGTTATAATAAGAAACT+AGG | + | chr3_3:71908057-71908076 | Msa0469880:CDS | 15.0% |
| !!! | TATCTCAATATTTTAAAAAC+TGG | - | chr3_3:71908498-71908517 | None:intergenic | 15.0% |
| !! | TTAACTTAGTAAAGTATAAT+TGG | + | chr3_3:71909797-71909816 | Msa0469880:intron | 15.0% |
| !! | TAAAAATATGAAGATAAATG+TGG | + | chr3_3:71909922-71909941 | Msa0469880:intron | 15.0% |
| !! | AGAATTGAAATAATTAAATG+TGG | + | chr3_3:71910463-71910482 | Msa0469880:three_prime_UTR | 15.0% |
| !!! | TGAATTGTATATTTTCATTG+AGG | - | chr3_3:71906852-71906871 | None:intergenic | 20.0% |
| !! | CCACTATTTAATTAAAATCT+TGG | - | chr3_3:71907291-71907310 | None:intergenic | 20.0% |
| !!! | CCAAGATTTTAATTAAATAG+TGG | + | chr3_3:71907288-71907307 | Msa0469880:intron | 20.0% |
| !!! | AGATTTTAATTAAATAGTGG+CGG | + | chr3_3:71907291-71907310 | Msa0469880:intron | 20.0% |
| !! | TCAAATATATTGAATGACAT+TGG | + | chr3_3:71907985-71908004 | Msa0469880:CDS | 20.0% |
| !!! | TTCTCTTTTTGTCAATAAAA+AGG | + | chr3_3:71908578-71908597 | Msa0469880:intron | 20.0% |
| !! | TCAGTTATATTTACAAAATC+AGG | - | chr3_3:71908751-71908770 | None:intergenic | 20.0% |
| !! | TTTAATTAACTTCAAAGTCA+CGG | + | chr3_3:71908884-71908903 | Msa0469880:intron | 20.0% |
| !!! | CATATTTTTTGCTTATATTC+TGG | + | chr3_3:71909496-71909515 | Msa0469880:intron | 20.0% |
| !! | ACATGAAAAATAGTTATAAG+TGG | + | chr3_3:71909665-71909684 | Msa0469880:intron | 20.0% |
| !! | CATGAAAAATAGTTATAAGT+GGG | + | chr3_3:71909666-71909685 | Msa0469880:intron | 20.0% |
| !! | GAACATTCCAAAATAAATAA+AGG | + | chr3_3:71910195-71910214 | Msa0469880:CDS | 20.0% |
| !! | AAGAAAAATTTAATGTACTG+TGG | - | chr3_3:71910548-71910567 | None:intergenic | 20.0% |
| ! | GATATAATTGACACATGATT+AGG | + | chr3_3:71907511-71907530 | Msa0469880:intron | 25.0% |
| !! | TTCTAGAAATTTATTCTCTG+TGG | - | chr3_3:71907579-71907598 | None:intergenic | 25.0% |
| !! | AATGAGAAGAGAAAATTTTG+AGG | - | chr3_3:71907679-71907698 | None:intergenic | 25.0% |
| ! | GAAAAAATGGATGTATCATA+TGG | - | chr3_3:71907761-71907780 | None:intergenic | 25.0% |
| ! | TTTAGTTAAAGATGTTCAGA+AGG | + | chr3_3:71908146-71908165 | Msa0469880:CDS | 25.0% |
| ! | AAAGTACACTGTTAAACAAA+AGG | + | chr3_3:71908200-71908219 | Msa0469880:CDS | 25.0% |
| ! | CCAAGAAAATCTATAGATAT+AGG | - | chr3_3:71908228-71908247 | None:intergenic | 25.0% |
| !! | CCTATATCTATAGATTTTCT+TGG | + | chr3_3:71908225-71908244 | Msa0469880:CDS | 25.0% |
| ! | TCCCTATGTATAAAAATAGA+TGG | + | chr3_3:71908359-71908378 | Msa0469880:intron | 25.0% |
| !!! | CCCATCTATTTTTATACATA+GGG | - | chr3_3:71908363-71908382 | None:intergenic | 25.0% |
| ! | CCCTATGTATAAAAATAGAT+GGG | + | chr3_3:71908360-71908379 | Msa0469880:intron | 25.0% |
| !!! | ACCCATCTATTTTTATACAT+AGG | - | chr3_3:71908364-71908383 | None:intergenic | 25.0% |
| ! | ATGTATAAAAATAGATGGGT+AGG | + | chr3_3:71908364-71908383 | Msa0469880:intron | 25.0% |
| ! | ACTTATGATTCAAGTCATTA+TGG | + | chr3_3:71908838-71908857 | Msa0469880:CDS | 25.0% |
| ! | ACTACAGTAAATTCGTATTT+CGG | + | chr3_3:71909042-71909061 | Msa0469880:CDS | 25.0% |
| ! | TCAAAAATTATTCTGCAATG+TGG | - | chr3_3:71909243-71909262 | None:intergenic | 25.0% |
| !! | TGTAATATTTGTGTTACTAC+AGG | + | chr3_3:71909308-71909327 | Msa0469880:intron | 25.0% |
| ! | CAATAACATCATTAAAACCT+AGG | + | chr3_3:71909587-71909606 | Msa0469880:intron | 25.0% |
| !!! | ATAACATTTTGAGTTTTCCT+AGG | - | chr3_3:71909607-71909626 | None:intergenic | 25.0% |
| ! | TTCTCATAATATACCACATT+AGG | - | chr3_3:71910045-71910064 | None:intergenic | 25.0% |
| !! | TCCAAAATAAATAAAGGTGT+AGG | + | chr3_3:71910201-71910220 | Msa0469880:CDS | 25.0% |
| !!! | TCCTACACCTTTATTTATTT+TGG | - | chr3_3:71910205-71910224 | None:intergenic | 25.0% |
| GTACAAGACCAATTATATAC+AGG | - | chr3_3:71906830-71906849 | None:intergenic | 30.0% | |
| !! | TGTTTTTGTGTGTCCATTTT+TGG | - | chr3_3:71906971-71906990 | None:intergenic | 30.0% |
| ATCTTGGAAACTATATGCAA+AGG | - | chr3_3:71907275-71907294 | None:intergenic | 30.0% | |
| !! | TTTTAATTAAATAGTGGCGG+TGG | + | chr3_3:71907294-71907313 | Msa0469880:intron | 30.0% |
| ATTTGTTTGGAAAAACCATG+TGG | + | chr3_3:71907427-71907446 | Msa0469880:intron | 30.0% | |
| AGTAAGAAAAGTCTAGTAGA+TGG | + | chr3_3:71907486-71907505 | Msa0469880:intron | 30.0% | |
| !!! | ATGATACATCCATTTTTTCC+AGG | + | chr3_3:71907762-71907781 | Msa0469880:intron | 30.0% |
| CATACATATCCTGGAAAAAA+TGG | - | chr3_3:71907774-71907793 | None:intergenic | 30.0% | |
| !!! | CATTTTTTCCAGGATATGTA+TGG | + | chr3_3:71907772-71907791 | Msa0469880:intron | 30.0% |
| !! | GTTTAACAGTGTACTTTTTG+AGG | - | chr3_3:71908197-71908216 | None:intergenic | 30.0% |
| TTTCTTGGATTAAAGATCCT+TGG | + | chr3_3:71908240-71908259 | Msa0469880:CDS | 30.0% | |
| !! | GCTGTGTTCTTTTTCATATA+AGG | + | chr3_3:71908312-71908331 | Msa0469880:intron | 30.0% |
| CTTTAACAGAAAGATGAGAT+TGG | - | chr3_3:71908611-71908630 | None:intergenic | 30.0% | |
| TCAAAGCTTCAATTTCTCTA+TGG | - | chr3_3:71908693-71908712 | None:intergenic | 30.0% | |
| ! | TTTTCAGTGAGAATGAATCT+CGG | + | chr3_3:71908721-71908740 | Msa0469880:CDS | 30.0% |
| TATGATTCAAGTCATTATGG+TGG | + | chr3_3:71908841-71908860 | Msa0469880:CDS | 30.0% | |
| TTCATTCATTCCCTCTTTAT+AGG | + | chr3_3:71908944-71908963 | Msa0469880:intron | 30.0% | |
| TGGAATCAGATAAATGATCA+TGG | + | chr3_3:71908967-71908986 | Msa0469880:CDS | 30.0% | |
| GAAATACGAATTTACTGTAG+TGG | - | chr3_3:71909043-71909062 | None:intergenic | 30.0% | |
| AATAGTACTCAACAATGAGA+TGG | + | chr3_3:71909092-71909111 | Msa0469880:CDS | 30.0% | |
| !!! | TCCTTGGAAACATTTTTTAC+AGG | - | chr3_3:71909132-71909151 | None:intergenic | 30.0% |
| ! | CTTTTGAATCACTTTGTCAA+AGG | + | chr3_3:71909399-71909418 | Msa0469880:CDS | 30.0% |
| ATGGAATCTTACATTTGTTC+TGG | + | chr3_3:71909470-71909489 | Msa0469880:intron | 30.0% | |
| ATTCAGAGCTATGTGAAATA+TGG | + | chr3_3:71909528-71909547 | Msa0469880:intron | 30.0% | |
| !! | TTATGTGATTGATTGGTTTG+AGG | - | chr3_3:71909977-71909996 | None:intergenic | 30.0% |
| TCATCAGTTATGTGATTGAT+TGG | - | chr3_3:71909984-71910003 | None:intergenic | 30.0% | |
| TGAGAAATTAACTCACCATA+TGG | + | chr3_3:71910001-71910020 | Msa0469880:intron | 30.0% | |
| ATGTGGTATATTATGAGAAC+TGG | + | chr3_3:71910046-71910065 | Msa0469880:CDS | 30.0% | |
| TATTAGCAGAAAGTTCAAAG+TGG | - | chr3_3:71910089-71910108 | None:intergenic | 30.0% | |
| TTGAACTTTCTGCTAATATC+AGG | + | chr3_3:71910091-71910110 | Msa0469880:CDS | 30.0% | |
| TGAACTTTCTGCTAATATCA+GGG | + | chr3_3:71910092-71910111 | Msa0469880:CDS | 30.0% | |
| TTAAGTTTCAGTGAGATATG+AGG | - | chr3_3:71910303-71910322 | None:intergenic | 30.0% | |
| ATATCTCACTGAAACTTAAG+TGG | + | chr3_3:71910304-71910323 | Msa0469880:three_prime_UTR | 30.0% | |
| TTAATGAAAGCGATCAAACT+CGG | - | chr3_3:71910385-71910404 | None:intergenic | 30.0% | |
| TTTGATCGCTTTCATTAACT+AGG | + | chr3_3:71910387-71910406 | Msa0469880:three_prime_UTR | 30.0% | |
| TAAAAAATATGCTACTCCCT+TGG | + | chr3_3:71910418-71910437 | Msa0469880:three_prime_UTR | 30.0% | |
| TGGCTGCAGTTATGTTATTA+TGG | + | chr3_3:71906896-71906915 | Msa0469880:CDS | 35.0% | |
| GAAGTAATCATTGCTCATCA+TGG | + | chr3_3:71906997-71907016 | Msa0469880:CDS | 35.0% | |
| ! | AGCTAACCTAAGAAGCATAA+AGG | - | chr3_3:71907166-71907185 | None:intergenic | 35.0% |
| ! | ATGCTTCTTAGGTTAGCTAA+TGG | + | chr3_3:71907168-71907187 | Msa0469880:CDS | 35.0% |
| AGCAGTTTCTCTCATATCAA+AGG | - | chr3_3:71907205-71907224 | None:intergenic | 35.0% | |
| !! | TCCAAGGTACTTTTCAATCA+TGG | + | chr3_3:71907237-71907256 | Msa0469880:intron | 35.0% |
| !! | TCCATGATTGAAAAGTACCT+TGG | - | chr3_3:71907241-71907260 | None:intergenic | 35.0% |
| !!! | AGTGTTTTGATATGTCAACG+CGG | - | chr3_3:71907374-71907393 | None:intergenic | 35.0% |
| TTTCATTTCTCTACACCACA+TGG | - | chr3_3:71907445-71907464 | None:intergenic | 35.0% | |
| TGTGGTGTAGAGAAATGAAA+AGG | + | chr3_3:71907445-71907464 | Msa0469880:intron | 35.0% | |
| AATGAAAAGGACACATGTAG+AGG | + | chr3_3:71907458-71907477 | Msa0469880:intron | 35.0% | |
| ! | TTTTTCCAGGATATGTATGG+TGG | + | chr3_3:71907775-71907794 | Msa0469880:intron | 35.0% |
| ! | AACACTACTTTGAAGGCAAA+TGG | + | chr3_3:71907799-71907818 | Msa0469880:CDS | 35.0% |
| AACAACATGGAAAGATTCCA+TGG | + | chr3_3:71907875-71907894 | Msa0469880:CDS | 35.0% | |
| !!! | TTTTTTCCATCTGCATGTGA+AGG | - | chr3_3:71907960-71907979 | None:intergenic | 35.0% |
| CTAAGAGCAATTGCAAAGTT+TGG | + | chr3_3:71908087-71908106 | Msa0469880:CDS | 35.0% | |
| ! | GCTTTGTATGGTGGAATAAT+TGG | + | chr3_3:71908117-71908136 | Msa0469880:CDS | 35.0% |
| !! | TAAAAACTGGTTTGAACTGC+CGG | - | chr3_3:71908485-71908504 | None:intergenic | 35.0% |
| AATTTCTCTATGGATCCCAA+GGG | - | chr3_3:71908683-71908702 | None:intergenic | 35.0% | |
| TTTCAGTGAGAATGAATCTC+GGG | + | chr3_3:71908722-71908741 | Msa0469880:CDS | 35.0% | |
| TTTCAACACTTGAGCAAACT+TGG | - | chr3_3:71908797-71908816 | None:intergenic | 35.0% | |
| ATTCATTCCCTCTTTATAGG+TGG | + | chr3_3:71908947-71908966 | Msa0469880:intron | 35.0% | |
| TCTGATTCCACCTATAAAGA+GGG | - | chr3_3:71908957-71908976 | None:intergenic | 35.0% | |
| ATCTGATTCCACCTATAAAG+AGG | - | chr3_3:71908958-71908977 | None:intergenic | 35.0% | |
| ACAATACTTTCACCAAGTAC+AGG | + | chr3_3:71909069-71909088 | Msa0469880:CDS | 35.0% | |
| TTGAGTACTATTCCTGTACT+TGG | - | chr3_3:71909084-71909103 | None:intergenic | 35.0% | |
| !!! | GGAAACATTTTTTACAGGCA+TGG | - | chr3_3:71909127-71909146 | None:intergenic | 35.0% |
| GCCTGTAAAAAATGTTTCCA+AGG | + | chr3_3:71909128-71909147 | Msa0469880:CDS | 35.0% | |
| AGAACCTTGAGAACAATAGT+TGG | - | chr3_3:71909219-71909238 | None:intergenic | 35.0% | |
| ! | TATTTGTGTTACTACAGGAC+AGG | + | chr3_3:71909313-71909332 | Msa0469880:intron | 35.0% |
| ! | ATTTGTGTTACTACAGGACA+GGG | + | chr3_3:71909314-71909333 | Msa0469880:intron | 35.0% |
| GAATCACTTTGTCAAAGGAA+TGG | + | chr3_3:71909404-71909423 | Msa0469880:CDS | 35.0% | |
| ATCTACTTGTAGTCTCATCT+TGG | + | chr3_3:71909625-71909644 | Msa0469880:intron | 35.0% | |
| TCTATACGTAGGACTAAGTT+AGG | - | chr3_3:71909731-71909750 | None:intergenic | 35.0% | |
| GATGACATAACTCTATACGT+AGG | - | chr3_3:71909742-71909761 | None:intergenic | 35.0% | |
| TAATGAAAGCGATCAAACTC+GGG | - | chr3_3:71910384-71910403 | None:intergenic | 35.0% | |
| CTTGAAATACAGCTACTAGT+GGG | - | chr3_3:71910445-71910464 | None:intergenic | 35.0% | |
| TCTTGAAATACAGCTACTAG+TGG | - | chr3_3:71910446-71910465 | None:intergenic | 35.0% | |
| ! | ATGTGGCTTGATGTGTATTT+TGG | + | chr3_3:71910480-71910499 | Msa0469880:three_prime_UTR | 35.0% |
| AAAAACTCAAGTGCCATATG+TGG | + | chr3_3:71910520-71910539 | Msa0469880:three_prime_UTR | 35.0% | |
| ATGCCAAACTGGAAACAAAG+AGG | - | chr3_3:71906939-71906958 | None:intergenic | 40.0% | |
| GGATGGATGTTATCCAAGAA+GGG | + | chr3_3:71907058-71907077 | Msa0469880:CDS | 40.0% | |
| GATGGATGTTATCCAAGAAG+GGG | + | chr3_3:71907059-71907078 | Msa0469880:CDS | 40.0% | |
| ATGGATGTTATCCAAGAAGG+GGG | + | chr3_3:71907060-71907079 | Msa0469880:CDS | 40.0% | |
| AGTTCAGCTTCAAGTGGTAT+TGG | + | chr3_3:71907132-71907151 | Msa0469880:CDS | 40.0% | |
| GTTAGCTAATGGTGTAGCAA+AGG | + | chr3_3:71907179-71907198 | Msa0469880:CDS | 40.0% | |
| ! | ACTACTTTGAAGGCAAATGG+TGG | + | chr3_3:71907802-71907821 | Msa0469880:CDS | 40.0% |
| GGCATTACAAGTCTATTCCA+TGG | - | chr3_3:71907895-71907914 | None:intergenic | 40.0% | |
| CTACTAGCAAGAATCACAGA+TGG | - | chr3_3:71907916-71907935 | None:intergenic | 40.0% | |
| TCTGTGATTCTTGCTAGTAG+AGG | + | chr3_3:71907916-71907935 | Msa0469880:CDS | 40.0% | |
| CTGTGATTCTTGCTAGTAGA+GGG | + | chr3_3:71907917-71907936 | Msa0469880:CDS | 40.0% | |
| AGTAGTGTATTTGCACCACA+TGG | + | chr3_3:71908012-71908031 | Msa0469880:CDS | 40.0% | |
| ! | GCTTTCAAGAGTTTTCCATG+TGG | - | chr3_3:71908030-71908049 | None:intergenic | 40.0% |
| CATGGAAAACTCTTGAAAGC+AGG | + | chr3_3:71908030-71908049 | Msa0469880:CDS | 40.0% | |
| ! | TTTGGTCCACAAGCTTTGTA+TGG | + | chr3_3:71908105-71908124 | Msa0469880:CDS | 40.0% |
| ATTCCACCATACAAAGCTTG+TGG | - | chr3_3:71908114-71908133 | None:intergenic | 40.0% | |
| GTTAAAGATGTTCAGAAGGC+TGG | + | chr3_3:71908150-71908169 | Msa0469880:CDS | 40.0% | |
| CAACTTACCAGCATCATTTG+AGG | - | chr3_3:71908288-71908307 | None:intergenic | 40.0% | |
| CAACCCAACTGCAATGTAAA+CGG | + | chr3_3:71908411-71908430 | Msa0469880:intron | 40.0% | |
| AACCCAACTGCAATGTAAAC+GGG | + | chr3_3:71908412-71908431 | Msa0469880:intron | 40.0% | |
| ATCCCGTTTACATTGCAGTT+GGG | - | chr3_3:71908417-71908436 | None:intergenic | 40.0% | |
| CAATTTCTCTATGGATCCCA+AGG | - | chr3_3:71908684-71908703 | None:intergenic | 40.0% | |
| TTCAGTGAGAATGAATCTCG+GGG | + | chr3_3:71908723-71908742 | Msa0469880:CDS | 40.0% | |
| CGAATTTACTGTAGTGGTCA+TGG | - | chr3_3:71909037-71909056 | None:intergenic | 40.0% | |
| !! | GTTGGTGACATGGATGATAA+TGG | - | chr3_3:71909201-71909220 | None:intergenic | 40.0% |
| !! | GAGAACAATAGTTGGTGACA+TGG | - | chr3_3:71909211-71909230 | None:intergenic | 40.0% |
| GTCACCAACTATTGTTCTCA+AGG | + | chr3_3:71909212-71909231 | Msa0469880:CDS | 40.0% | |
| GATTATTGCTGCAACTTCAG+AGG | + | chr3_3:71909374-71909393 | Msa0469880:CDS | 40.0% | |
| GGAGCAGTTACAGAAGAAAA+AGG | - | chr3_3:71909432-71909451 | None:intergenic | 40.0% | |
| TTTCTTCTGTAACTGCTCCT+AGG | + | chr3_3:71909433-71909452 | Msa0469880:CDS | 40.0% | |
| TTCTTCTGTAACTGCTCCTA+GGG | + | chr3_3:71909434-71909453 | Msa0469880:CDS | 40.0% | |
| CAGCTGCATAATCAACCATA+TGG | - | chr3_3:71910019-71910038 | None:intergenic | 40.0% | |
| TATGCAGCTGATACCTAATG+TGG | + | chr3_3:71910029-71910048 | Msa0469880:intron | 40.0% | |
| AGGGAAAGCCTTAGAAGTAA+GGG | + | chr3_3:71910111-71910130 | Msa0469880:CDS | 40.0% | |
| ! | TAAAGGTGTAGGAAAGCTTG+TGG | + | chr3_3:71910212-71910231 | Msa0469880:CDS | 40.0% |
| ACCCTTTCTTGGATCACTTA+CGG | - | chr3_3:71910238-71910257 | None:intergenic | 40.0% | |
| ! | GAATTTTCTCAAATGCCTGC+AGG | - | chr3_3:71910267-71910286 | None:intergenic | 40.0% |
| TGGTCAATGAGCTTCAGTTA+AGG | + | chr3_3:71910324-71910343 | Msa0469880:three_prime_UTR | 40.0% | |
| CAGTTAAGGTCGAATAGATC+AGG | + | chr3_3:71910338-71910357 | Msa0469880:three_prime_UTR | 40.0% | |
| ATCAGGAGTCCTAATTGATC+TGG | + | chr3_3:71910355-71910374 | Msa0469880:three_prime_UTR | 40.0% | |
| CCAAACTGGAAACAAAGAGG+AGG | - | chr3_3:71906936-71906955 | None:intergenic | 45.0% | |
| ! | CCTCCTCTTTGTTTCCAGTT+TGG | + | chr3_3:71906933-71906952 | Msa0469880:CDS | 45.0% |
| GCATCTGCTTCTGCCAAAAA+TGG | + | chr3_3:71906955-71906974 | Msa0469880:CDS | 45.0% | |
| ATCGTCGATGCTCGAAGATT+GGG | + | chr3_3:71907037-71907056 | Msa0469880:CDS | 45.0% | |
| GGGATGGATGTTATCCAAGA+AGG | + | chr3_3:71907057-71907076 | Msa0469880:CDS | 45.0% | |
| GTTGTCAGTTCAGCTTCAAG+TGG | + | chr3_3:71907126-71907145 | Msa0469880:CDS | 45.0% | |
| ! | TCAGCTTCAAGTGGTATTGG+TGG | + | chr3_3:71907135-71907154 | Msa0469880:CDS | 45.0% |
| ! | AGTACCTTGGAAGCATGAAG+AGG | - | chr3_3:71907228-71907247 | None:intergenic | 45.0% |
| CGCACTTGCAGACATTTGTT+TGG | + | chr3_3:71907414-71907433 | Msa0469880:intron | 45.0% | |
| TGTTGCCACCATACATATCC+TGG | - | chr3_3:71907783-71907802 | None:intergenic | 45.0% | |
| TGGTGGCAACACTACTTTGA+AGG | + | chr3_3:71907792-71907811 | Msa0469880:CDS | 45.0% | |
| ACCATACCTTCACATGCAGA+TGG | + | chr3_3:71907951-71907970 | Msa0469880:CDS | 45.0% | |
| TCCATCTGCATGTGAAGGTA+TGG | - | chr3_3:71907955-71907974 | None:intergenic | 45.0% | |
| AAAGATGTTCAGAAGGCTGG+AGG | + | chr3_3:71908153-71908172 | Msa0469880:CDS | 45.0% | |
| AAGATGTTCAGAAGGCTGGA+GGG | + | chr3_3:71908154-71908173 | Msa0469880:CDS | 45.0% | |
| ! | ATCATTTGAGGTCCACCTGA+AGG | - | chr3_3:71908276-71908295 | None:intergenic | 45.0% |
| GATCCCGTTTACATTGCAGT+TGG | - | chr3_3:71908418-71908437 | None:intergenic | 45.0% | |
| GTAAACGGGATCAAACCAAC+CGG | + | chr3_3:71908426-71908445 | Msa0469880:intron | 45.0% | |
| GCACAATATGAGCTTCCTTC+AGG | + | chr3_3:71908646-71908665 | Msa0469880:CDS | 45.0% | |
| !! | GATGATAATGGTCTCTTCCC+CGG | - | chr3_3:71909189-71909208 | None:intergenic | 45.0% |
| AGGGAAGTGAAAGCAGTAGT+AGG | + | chr3_3:71909333-71909352 | Msa0469880:CDS | 45.0% | |
| AAAGCAGTAGTAGGTGCAAG+TGG | + | chr3_3:71909342-71909361 | Msa0469880:CDS | 45.0% | |
| CATACCTGATGATAGACCCT+AGG | - | chr3_3:71909453-71909472 | None:intergenic | 45.0% | |
| CTAGGGTCTATCATCAGGTA+TGG | + | chr3_3:71909451-71909470 | Msa0469880:intron | 45.0% | |
| GGATGTACAGCAAGATCACA+AGG | + | chr3_3:71909943-71909962 | Msa0469880:intron | 45.0% | |
| AGAAAGTTCAAAGTGGTCCC+CGG | - | chr3_3:71910082-71910101 | None:intergenic | 45.0% | |
| CAGGGAAAGCCTTAGAAGTA+AGG | + | chr3_3:71910110-71910129 | Msa0469880:CDS | 45.0% | |
| GCCGTAAGTGATCCAAGAAA+GGG | + | chr3_3:71910234-71910253 | Msa0469880:CDS | 45.0% | |
| GTAAGTGATCCAAGAAAGGG+TGG | + | chr3_3:71910237-71910256 | Msa0469880:CDS | 45.0% | |
| ATGTACTGTGGCTCCACATA+TGG | - | chr3_3:71910536-71910555 | None:intergenic | 45.0% | |
| ! | AACAAAGAGGAGGCATGCGA+TGG | - | chr3_3:71906926-71906945 | None:intergenic | 50.0% |
| !! | CTTCGAGCATCGACGATCAT+CGG | - | chr3_3:71907034-71907053 | None:intergenic | 50.0% |
| GATCGTCGATGCTCGAAGAT+TGG | + | chr3_3:71907036-71907055 | Msa0469880:CDS | 50.0% | |
| TCGATGCTCGAAGATTGGGA+TGG | + | chr3_3:71907041-71907060 | Msa0469880:CDS | 50.0% | |
| TGTGGCTGCTGCTCTTTGTT+TGG | + | chr3_3:71907101-71907120 | Msa0469880:CDS | 50.0% | |
| ! | GTGGCTGCTGCTCTTTGTTT+GGG | + | chr3_3:71907102-71907121 | Msa0469880:CDS | 50.0% |
| !! | GCTTCAAGTGGTATTGGTGG+CGG | + | chr3_3:71907138-71907157 | Msa0469880:CDS | 50.0% |
| GCGGTGCCTTTATGCTTCTT+AGG | + | chr3_3:71907157-71907176 | Msa0469880:CDS | 50.0% | |
| TGCTCCTCTTCATGCTTCCA+AGG | + | chr3_3:71907221-71907240 | Msa0469880:CDS | 50.0% | |
| TTAAATAGTGGCGGTGGACG+AGG | + | chr3_3:71907300-71907319 | Msa0469880:intron | 50.0% | |
| ATGTCTGCAAGTGCGCAACT+TGG | - | chr3_3:71907409-71907428 | None:intergenic | 50.0% | |
| AGAACTAGCAGGCCTTCACA+AGG | + | chr3_3:71907846-71907865 | Msa0469880:CDS | 50.0% | |
| GTTGTTCCCATGCCTTGTGA+AGG | - | chr3_3:71907861-71907880 | None:intergenic | 50.0% | |
| CACAAGGCATGGGAACAACA+TGG | + | chr3_3:71907862-71907881 | Msa0469880:CDS | 50.0% | |
| ! | GGTCCACAAGCTTTGTATGG+TGG | + | chr3_3:71908108-71908127 | Msa0469880:CDS | 50.0% |
| GGCTGGAGGGATATTGACAT+TGG | + | chr3_3:71908167-71908186 | Msa0469880:CDS | 50.0% | |
| ! | ATTTGAGGTCCACCTGAAGG+AGG | - | chr3_3:71908273-71908292 | None:intergenic | 50.0% |
| AGGTGGACCTCAAATGATGC+TGG | + | chr3_3:71908278-71908297 | Msa0469880:CDS | 50.0% | |
| TAGATGGGTAGGCTGTCACA+TGG | + | chr3_3:71908375-71908394 | Msa0469880:intron | 50.0% | |
| TCCGGTTCAACCTGTTGATC+CGG | + | chr3_3:71908463-71908482 | Msa0469880:intron | 50.0% | |
| GTTTGAACTGCCGGATCAAC+AGG | - | chr3_3:71908476-71908495 | None:intergenic | 50.0% | |
| TGCTCCTAGGGTCTATCATC+AGG | + | chr3_3:71909446-71909465 | Msa0469880:CDS | 50.0% | |
| GAGAACTGGACAACAGTGAC+CGG | + | chr3_3:71910060-71910079 | Msa0469880:CDS | 50.0% | |
| AGAACTGGACAACAGTGACC+GGG | + | chr3_3:71910061-71910080 | Msa0469880:CDS | 50.0% | |
| GGACATGGCCCTTACTTCTA+AGG | - | chr3_3:71910122-71910141 | None:intergenic | 50.0% | |
| GACATATTGTCCCACCAGCA+AGG | - | chr3_3:71910152-71910171 | None:intergenic | 50.0% | |
| GGCCGTAAGTGATCCAAGAA+AGG | + | chr3_3:71910233-71910252 | Msa0469880:CDS | 50.0% | |
| GCAGGAAAACCACCCTTTCT+TGG | - | chr3_3:71910249-71910268 | None:intergenic | 50.0% | |
| ! | AGAAAGGGTGGTTTTCCTGC+AGG | + | chr3_3:71910249-71910268 | Msa0469880:CDS | 50.0% |
| CTCGGGACTCCAGATCAATT+AGG | - | chr3_3:71910367-71910386 | None:intergenic | 50.0% | |
| ACAGCTACTAGTGGGACCAA+GGG | - | chr3_3:71910437-71910456 | None:intergenic | 50.0% | |
| TACAGCTACTAGTGGGACCA+AGG | - | chr3_3:71910438-71910457 | None:intergenic | 50.0% | |
| GGCAGAAGCAGATGCCAAAC+TGG | - | chr3_3:71906950-71906969 | None:intergenic | 55.0% | |
| ACATGCAGTGGATGCAGCTG+TGG | + | chr3_3:71907083-71907102 | Msa0469880:CDS | 55.0% | |
| ATCCGATGCAGCCTCAATCG+CGG | + | chr3_3:71907339-71907358 | Msa0469880:intron | 55.0% | |
| AACCGCGATTGAGGCTGCAT+CGG | - | chr3_3:71907344-71907363 | None:intergenic | 55.0% | |
| GAAGGCAAATGGTGGCCTCT+CGG | + | chr3_3:71907810-71907829 | Msa0469880:CDS | 55.0% | |
| GCAGTTCCAGGAGAACTAGC+AGG | + | chr3_3:71907835-71907854 | Msa0469880:CDS | 55.0% | |
| ! | TGAAGGCCTGCTAGTTCTCC+TGG | - | chr3_3:71907844-71907863 | None:intergenic | 55.0% |
| TAGCAGGCCTTCACAAGGCA+TGG | + | chr3_3:71907851-71907870 | Msa0469880:CDS | 55.0% | |
| AGCAGGCCTTCACAAGGCAT+GGG | + | chr3_3:71907852-71907871 | Msa0469880:CDS | 55.0% | |
| ! | CTGAAGGAGGAGGCATACCA+AGG | - | chr3_3:71908260-71908279 | None:intergenic | 55.0% |
| CTTGGTATGCCTCCTCCTTC+AGG | + | chr3_3:71908258-71908277 | Msa0469880:CDS | 55.0% | |
| AACGGGATCAAACCAACCGG+CGG | + | chr3_3:71908429-71908448 | Msa0469880:intron | 55.0% | |
| !! | AAACCAACCGGCGGACTATC+TGG | + | chr3_3:71908438-71908457 | Msa0469880:intron | 55.0% |
| AAACCAGATAGTCCGCCGGT+TGG | - | chr3_3:71908444-71908463 | None:intergenic | 55.0% | |
| ! | GCCGGATCAACAGGTTGAAC+CGG | - | chr3_3:71908467-71908486 | None:intergenic | 55.0% |
| GAGCTTCCTTCAGGCCTTTC+TGG | + | chr3_3:71908655-71908674 | Msa0469880:CDS | 55.0% | |
| AGGGAACCAGAAAGGCCTGA+AGG | - | chr3_3:71908664-71908683 | None:intergenic | 55.0% | |
| !! | TCAGGCCTTTCTGGTTCCCT+TGG | + | chr3_3:71908664-71908683 | Msa0469880:CDS | 55.0% |
| !! | CAGGCCTTTCTGGTTCCCTT+GGG | + | chr3_3:71908665-71908684 | Msa0469880:CDS | 55.0% |
| GGATCCCAAGGGAACCAGAA+AGG | - | chr3_3:71908672-71908691 | None:intergenic | 55.0% | |
| ACGAAATTGGCAGGAGCAGG+CGG | - | chr3_3:71909162-71909181 | None:intergenic | 55.0% | |
| ACGACGAAATTGGCAGGAGC+AGG | - | chr3_3:71909165-71909184 | None:intergenic | 55.0% | |
| TCCTGCCAATTTCGTCGTGC+CGG | + | chr3_3:71909167-71909186 | Msa0469880:CDS | 55.0% | |
| GCAGTAGTAGGTGCAAGTGG+AGG | + | chr3_3:71909345-71909364 | Msa0469880:CDS | 55.0% | |
| GTGGGACAGCTCTCATGACA+TGG | + | chr3_3:71909684-71909703 | Msa0469880:intron | 55.0% | |
| GAACTGGACAACAGTGACCG+GGG | + | chr3_3:71910062-71910081 | Msa0469880:CDS | 55.0% | |
| !! | CAGCAAGGCTCTGAAGGACA+TGG | - | chr3_3:71910137-71910156 | None:intergenic | 55.0% |
| CATGTCCTTCAGAGCCTTGC+TGG | + | chr3_3:71910135-71910154 | Msa0469880:CDS | 55.0% | |
| TCCTTCAGAGCCTTGCTGGT+GGG | + | chr3_3:71910139-71910158 | Msa0469880:CDS | 55.0% | |
| CCACTGCATGTCCCCCTTCT+TGG | - | chr3_3:71907074-71907093 | None:intergenic | 60.0% | |
| CCAAGAAGGGGGACATGCAG+TGG | + | chr3_3:71907071-71907090 | Msa0469880:CDS | 60.0% | |
| CTCCTGGAACTGCTACCGAG+AGG | - | chr3_3:71907828-71907847 | None:intergenic | 60.0% | |
| GGTATGCCTCCTCCTTCAGG+TGG | + | chr3_3:71908261-71908280 | Msa0469880:CDS | 60.0% | |
| TGAGGTCCACCTGAAGGAGG+AGG | - | chr3_3:71908270-71908289 | None:intergenic | 60.0% | |
| CCGGAAACCAGATAGTCCGC+CGG | - | chr3_3:71908448-71908467 | None:intergenic | 60.0% | |
| !! | CCGGCGGACTATCTGGTTTC+CGG | + | chr3_3:71908445-71908464 | Msa0469880:intron | 60.0% |
| AGCAGGCGGTCGAACATCCT+TGG | - | chr3_3:71909148-71909167 | None:intergenic | 60.0% | |
| CCTGCCAATTTCGTCGTGCC+GGG | + | chr3_3:71909168-71909187 | Msa0469880:CDS | 60.0% | |
| CTGCCAATTTCGTCGTGCCG+GGG | + | chr3_3:71909169-71909188 | Msa0469880:CDS | 60.0% | |
| CTTCCCCGGCACGACGAAAT+TGG | - | chr3_3:71909175-71909194 | None:intergenic | 60.0% | |
| GTCCTTCAGAGCCTTGCTGG+TGG | + | chr3_3:71910138-71910157 | Msa0469880:CDS | 60.0% | |
| ! | TCCCACCAGCAAGGCTCTGA+AGG | - | chr3_3:71910143-71910162 | None:intergenic | 60.0% |
| GGTCAGCGCAACCGCGATTG+AGG | - | chr3_3:71907353-71907372 | None:intergenic | 65.0% | |
| GGCCTCTCGGTAGCAGTTCC+AGG | + | chr3_3:71907823-71907842 | Msa0469880:CDS | 65.0% | |
| CCCGGCACGACGAAATTGGC+AGG | - | chr3_3:71909171-71909190 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 71906827 | 71910607 | 71906827 | ID=Msa0469880;Name=Msa0469880 |
| chr3_3 | mRNA | 71906827 | 71910607 | 71906827 | ID=Msa0469880-mRNA-1;Parent=Msa0469880;Name=Msa0469880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=68|1|1|1|0.8|1|6|329|582 |
| chr3_3 | exon | 71906827 | 71907242 | 71906827 | ID=Msa0469880-mRNA-1:exon:17721;Parent=Msa0469880-mRNA-1 |
| chr3_3 | exon | 71907784 | 71908299 | 71907784 | ID=Msa0469880-mRNA-1:exon:17722;Parent=Msa0469880-mRNA-1 |
| chr3_3 | exon | 71908631 | 71908866 | 71908631 | ID=Msa0469880-mRNA-1:exon:17723;Parent=Msa0469880-mRNA-1 |
| chr3_3 | exon | 71908966 | 71909233 | 71908966 | ID=Msa0469880-mRNA-1:exon:17724;Parent=Msa0469880-mRNA-1 |
| chr3_3 | exon | 71909330 | 71909467 | 71909330 | ID=Msa0469880-mRNA-1:exon:17725;Parent=Msa0469880-mRNA-1 |
| chr3_3 | exon | 71910036 | 71910607 | 71910036 | ID=Msa0469880-mRNA-1:exon:17726;Parent=Msa0469880-mRNA-1 |
| chr3_3 | five_prime_UTR | 71906827 | 71906894 | 71906827 | ID=Msa0469880-mRNA-1:five_prime_utr;Parent=Msa0469880-mRNA-1 |
| chr3_3 | CDS | 71906895 | 71907242 | 71906895 | ID=Msa0469880-mRNA-1:cds;Parent=Msa0469880-mRNA-1 |
| chr3_3 | CDS | 71907784 | 71908299 | 71907784 | ID=Msa0469880-mRNA-1:cds;Parent=Msa0469880-mRNA-1 |
| chr3_3 | CDS | 71908631 | 71908866 | 71908631 | ID=Msa0469880-mRNA-1:cds;Parent=Msa0469880-mRNA-1 |
| chr3_3 | CDS | 71908966 | 71909233 | 71908966 | ID=Msa0469880-mRNA-1:cds;Parent=Msa0469880-mRNA-1 |
| chr3_3 | CDS | 71909330 | 71909467 | 71909330 | ID=Msa0469880-mRNA-1:cds;Parent=Msa0469880-mRNA-1 |
| chr3_3 | CDS | 71910036 | 71910278 | 71910036 | ID=Msa0469880-mRNA-1:cds;Parent=Msa0469880-mRNA-1 |
| chr3_3 | three_prime_UTR | 71910279 | 71910607 | 71910279 | ID=Msa0469880-mRNA-1:three_prime_utr;Parent=Msa0469880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
