AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374230 MtrunA17_Chr3g0124611 97.409 579 15 0 4 582 9 587 0.0 1162
Msa0374230 MtrunA17_Chr3g0106781 75.045 561 139 1 22 582 18 577 0.0 854
Msa0374230 MtrunA17_Chr6g0487461 52.028 567 259 4 28 582 58 623 0.0 551
Msa0374230 MtrunA17_Chr5g0438351 86.792 106 14 0 11 116 21 126 1.31e-39 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374230 AT4G39640.1 63.903 579 199 5 5 581 1 571 0.0 746
Msa0374230 AT4G39640.2 63.903 579 199 5 5 581 1 571 0.0 746
Msa0374230 AT4G39650.1 63.823 586 198 7 1 581 1 577 0.0 727
Msa0374230 AT4G29210.1 49.298 570 267 6 32 582 71 637 0.0 557
Msa0374230 AT4G29210.2 51.402 428 204 4 32 456 71 497 6.91e-156 457
Msa0374230 AT1G69820.1 71.556 225 63 1 286 509 1 225 2.05e-114 340

Find 170 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTCCTTCAGGCCTTTC+TGG 0.074565 3_1:-73557684 Msa0374230:CDS
TCCTACACCTTTATTTATTT+TGG 0.084530 3_1:+73556138 None:intergenic
CATCTTAATTCTTTATAATA+TGG 0.189228 3_1:-73559426 Msa0374230:exon
AATCATTTATCAAAGTAAAA+TGG 0.242721 3_1:-73555753 None:intergenic
TGCTGTAACCTGTATATAAT+TGG 0.247789 3_1:-73559483 None:intergenic
TTGAACTTTCTGCTAATATC+AGG 0.251199 3_1:-73556249 Msa0374230:CDS
TGTGGCTGCTGCTCTTTGTT+TGG 0.260299 3_1:-73559201 Msa0374230:CDS
CATGTCCTTCAGAGCCTTGC+TGG 0.265745 3_1:-73556205 Msa0374230:CDS
GCAGGAAAACCACCCTTTCT+TGG 0.267405 3_1:+73556094 None:intergenic
GCGGTGCCTTTATGCTTCTT+AGG 0.281278 3_1:-73559145 Msa0374230:CDS
TCAGTTATATTTACAAAATC+AGG 0.292693 3_1:+73557591 None:intergenic
ATGTGGCTTGATGTGTATTT+TGG 0.296049 3_1:-73555861 Msa0374230:three_prime_UTR
CCTCCTCTTTGTTTCCAGTT+TGG 0.297674 3_1:-73559369 Msa0374230:CDS
TGGCTGCAGTTATGTTATTA+TGG 0.301381 3_1:-73559406 Msa0374230:CDS
TCAAAGCCTCGATTTCTCTA+TGG 0.303562 3_1:+73557649 None:intergenic
CTTGGTATGCCTCCTCCTTC+AGG 0.309472 3_1:-73558043 Msa0374230:CDS
CTAAGAGCAATTGCAAAGTT+TGG 0.312938 3_1:-73558214 Msa0374230:CDS
GTGGCTGCTGCTCTTTGTTT+GGG 0.314878 3_1:-73559200 Msa0374230:CDS
ACTTATGATTCAAGTCATTA+TGG 0.319436 3_1:-73557501 Msa0374230:CDS
GGACATGGCCCTTACTTCTA+AGG 0.324451 3_1:+73556221 None:intergenic
TCAGGCCTTTCTGGTTCCCT+TGG 0.331021 3_1:-73557675 Msa0374230:CDS
CTTCCCCGGCACGACGAAAT+TGG 0.336481 3_1:+73557167 None:intergenic
GGAGCAGTTACAGAAGAAAA+AGG 0.352470 3_1:+73556911 None:intergenic
GATCGTCGATGCTCGAAGAT+TGG 0.359812 3_1:-73559266 Msa0374230:CDS
TTTCAGTTAGAATGAATCTT+GGG 0.364796 3_1:-73557617 Msa0374230:CDS
GGCCTCTCGGTAGCAGTTCC+AGG 0.369742 3_1:-73558478 Msa0374230:CDS
CAGGCCTTTCTGGTTCCCTT+GGG 0.372651 3_1:-73557674 Msa0374230:CDS
ACTACAGTAAATTCGTATTT+CGG 0.375583 3_1:-73557297 Msa0374230:CDS
CCAAGAAAATCTATAGATAT+AGG 0.377085 3_1:+73558076 None:intergenic
TTTCTTCTGTAACTGCTCCT+AGG 0.377805 3_1:-73556907 Msa0374230:CDS
ATCGTCGATGCTCGAAGATT+GGG 0.379068 3_1:-73559265 Msa0374230:CDS
GAACATTCCAAAATAAATAA+AGG 0.380999 3_1:-73556145 Msa0374230:CDS
CCTGCCAATTTCGTCGTGCC+GGG 0.393581 3_1:-73557171 Msa0374230:CDS
GTTAAAGATGTTCAGAAGGC+TGG 0.400636 3_1:-73558151 Msa0374230:CDS
TCCTGCCAATTTCGTCGTGC+CGG 0.409726 3_1:-73557172 Msa0374230:CDS
ATGTGGTATATTATGAGAAC+TGG 0.410439 3_1:-73556294 Msa0374230:CDS
GCACAATATGAGCTTCCTTC+AGG 0.410702 3_1:-73557693 Msa0374230:CDS
GGCAGAAGCAGATGCCAAAC+TGG 0.410790 3_1:+73559355 None:intergenic
ATGTACTGTGGCTCCACATA+TGG 0.411147 3_1:+73555808 None:intergenic
AGTTCAGCTTCAAGTGGTAT+TGG 0.425763 3_1:-73559170 Msa0374230:CDS
TTCTTCTGTAACTGCTCCTA+GGG 0.425863 3_1:-73556906 Msa0374230:CDS
GCTTTGTATGGTGGAATAGT+TGG 0.425952 3_1:-73558184 Msa0374230:CDS
ATGCTTCTTAGGTTAGCTAA+TGG 0.427061 3_1:-73559134 Msa0374230:CDS
ACCCTTTCTTGGATCACTTA+CGG 0.430481 3_1:+73556105 None:intergenic
CTCGGGACTCCAGATCAATT+AGG 0.436728 3_1:+73555976 None:intergenic
AGCTAACCTAAGAAGCATAA+AGG 0.439391 3_1:+73559139 None:intergenic
TTTCTTGGATTAAAGATCCT+TGG 0.439838 3_1:-73558061 Msa0374230:CDS
ATCAGGAGTCCTAATTGATC+TGG 0.440048 3_1:-73555985 Msa0374230:three_prime_UTR
CAGGGAAAGCCTTAGAAGTA+AGG 0.450851 3_1:-73556230 Msa0374230:CDS
TTTGGTCCACAAGCTTTGTA+TGG 0.452119 3_1:-73558196 Msa0374230:CDS
TTCTCATAATATACCACATT+AGG 0.453122 3_1:+73556298 None:intergenic
GAATCACTTTGTCAAAGGAA+TGG 0.453749 3_1:-73556936 Msa0374230:CDS
TTTCAACACTTGAGCAAACT+TGG 0.459644 3_1:+73557545 None:intergenic
TGAAGGCCAGCTAGTTCTCC+TGG 0.462220 3_1:+73558460 None:intergenic
TTGAGTACTATTCCTGTACT+TGG 0.467003 3_1:+73557258 None:intergenic
TGCTCCTAGGGTCTATCATC+AGG 0.468787 3_1:-73556894 Msa0374230:intron
AAAGTACACTGTTAAACAAA+AGG 0.472586 3_1:-73558101 Msa0374230:CDS
ACGACGAAATTGGCAGGAGC+AGG 0.472614 3_1:+73557177 None:intergenic
CAGTTAAGGTCGAATAGATC+AGG 0.479105 3_1:-73556002 Msa0374230:three_prime_UTR
AACACTACTTTGAAGGCAAA+TGG 0.481370 3_1:-73558502 Msa0374230:CDS
TCCTTCAGAGCCTTGCTGGT+GGG 0.483076 3_1:-73556201 Msa0374230:CDS
ATATCTCACTTAAACTTAAG+TGG 0.484133 3_1:-73556036 Msa0374230:three_prime_UTR
TAACTTACCAGCATCATTTG+AGG 0.485318 3_1:+73558016 None:intergenic
TGGTGGCAACACTACTTTGA+AGG 0.485618 3_1:-73558509 Msa0374230:CDS
CGAATTTACTGTAGTGGTCA+TGG 0.494343 3_1:+73557305 None:intergenic
AGGGAAGTGAAAGCAGTAGT+AGG 0.496539 3_1:-73557007 Msa0374230:CDS
CAGTGATTCTTGCTAGTAGA+GGG 0.498771 3_1:-73558384 Msa0374230:CDS
GAGAACTGGACAACAGTGAC+CGG 0.499140 3_1:-73556280 Msa0374230:CDS
CGATTTCTCTATGGATCCCA+AGG 0.500870 3_1:+73557658 None:intergenic
AACAACATGGAAAGCTTCCA+TGG 0.507183 3_1:-73558426 Msa0374230:CDS
TCCATCTGCATGTGAAGGTA+TGG 0.508355 3_1:+73558349 None:intergenic
CCCGGCACGACGAAATTGGC+AGG 0.508773 3_1:+73557171 None:intergenic
TGGTCAATGAGCTTCAGTTA+AGG 0.509429 3_1:-73556016 Msa0374230:three_prime_UTR
TTTGATCGCTTTCATTAACT+AGG 0.510500 3_1:-73555953 Msa0374230:three_prime_UTR
GAAGTAATCATTGCTCATCA+TGG 0.511179 3_1:-73559305 Msa0374230:CDS
GTACAAGACCAATTATATAC+AGG 0.516352 3_1:+73559475 None:intergenic
TAGCTGGCCTTCACAAGGCA+TGG 0.517657 3_1:-73558450 Msa0374230:CDS
GATGATAATGGTCTCTTCCC+CGG 0.518164 3_1:+73557153 None:intergenic
CTTCGAGCATCGACGATCAT+CGG 0.519186 3_1:+73559271 None:intergenic
TCCCACCAGCAAGGCTCTGA+AGG 0.522177 3_1:+73556200 None:intergenic
GTCACCAACTATTGTTCTCA+AGG 0.525838 3_1:-73557127 Msa0374230:intron
ACATGCAGTGGATGCAGCTG+TGG 0.526599 3_1:-73559219 Msa0374230:CDS
GGCCGTAAGTGATCCAAGAA+AGG 0.530949 3_1:-73556107 Msa0374230:CDS
GTCCTTCAGAGCCTTGCTGG+TGG 0.531940 3_1:-73556202 Msa0374230:CDS
TTTAGTTAAAGATGTTCAGA+AGG 0.532577 3_1:-73558155 Msa0374230:CDS
GTTGGTGACATGGATGATAA+TGG 0.536093 3_1:+73557141 None:intergenic
ATATGTTATAATAAGAAACT+AGG 0.536973 3_1:-73558244 Msa0374230:CDS
GGGATGGATGTTATCCAAGA+AGG 0.538671 3_1:-73559245 Msa0374230:CDS
TTAAGTTTAAGTGAGATATG+AGG 0.539640 3_1:+73556040 None:intergenic
TGAACTTTCTGCTAATATCA+GGG 0.539929 3_1:-73556248 Msa0374230:CDS
TCAGCTTCAAGTGGTATTGG+TGG 0.540011 3_1:-73559167 Msa0374230:CDS
GCTTCAAGTGGTATTGGTGG+CGG 0.540106 3_1:-73559164 Msa0374230:CDS
TTAATGAAAGCGATCAAACT+CGG 0.540330 3_1:+73555958 None:intergenic
CATATTATAAAGAATTAAGA+TGG 0.547738 3_1:+73559427 None:intergenic
GGTATGCCTCCTCCTTCAGG+TGG 0.549489 3_1:-73558040 Msa0374230:CDS
AGGTGGGCCTCAAATGATGC+TGG 0.553365 3_1:-73558023 Msa0374230:intron
GGCATTACAAGTCTATTCCA+TGG 0.553522 3_1:+73558409 None:intergenic
GATTATTGCTGCAACTTCAG+AGG 0.553592 3_1:-73556966 Msa0374230:CDS
AGAATTGAAATAATTAAATG+TGG 0.555500 3_1:-73555878 Msa0374230:three_prime_UTR
TGCTCCTCTTCATGCTTCCA+AGG 0.556551 3_1:-73559081 Msa0374230:intron
TGAGGCCCACCTGAAGGAGG+AGG 0.557428 3_1:+73558034 None:intergenic
GAAGGCAAATGGTGGCCTCT+CGG 0.562410 3_1:-73558491 Msa0374230:CDS
GGCTGGAGGGATATTGACAT+TGG 0.564181 3_1:-73558134 Msa0374230:CDS
ATCATTTGAGGCCCACCTGA+AGG 0.564377 3_1:+73558028 None:intergenic
AGGGAAAGCCTTAGAAGTAA+GGG 0.565321 3_1:-73556229 Msa0374230:CDS
GCCGTAAGTGATCCAAGAAA+GGG 0.566039 3_1:-73556106 Msa0374230:CDS
ACAATACTTTCACCAAGTAC+AGG 0.566632 3_1:-73557270 Msa0374230:CDS
CAGCAAGGCTCTGAAGGACA+TGG 0.566832 3_1:+73556206 None:intergenic
GCAGTTCCAGGAGAACTAGC+TGG 0.567970 3_1:-73558466 Msa0374230:CDS
GTTGTTCCCATGCCTTGTGA+AGG 0.569302 3_1:+73558443 None:intergenic
GGTCCACAAGCTTTGTATGG+TGG 0.569960 3_1:-73558193 Msa0374230:CDS
AGAACCTTGAGAACAATAGT+TGG 0.571389 3_1:+73557123 None:intergenic
TGGAATCAGATAAATGATCA+TGG 0.571447 3_1:-73557372 Msa0374230:CDS
AATAGTACTCAACAATGAGA+TGG 0.573475 3_1:-73557247 Msa0374230:CDS
AAAGCAGTAGTAGGTGCAAG+TGG 0.574642 3_1:-73556998 Msa0374230:CDS
GGATCCCAAGGGAACCAGAA+AGG 0.575413 3_1:+73557670 None:intergenic
GGATGGATGTTATCCAAGAA+GGG 0.577595 3_1:-73559244 Msa0374230:CDS
TCAGTGATTCTTGCTAGTAG+AGG 0.579772 3_1:-73558385 Msa0374230:CDS
GTATGCCTCCTCCTTCAGGT+GGG 0.584516 3_1:-73558039 Msa0374230:CDS
ACCATACCTTCACATGCAGA+TGG 0.585318 3_1:-73558350 Msa0374230:CDS
CATGGAAAACTCTTGAAAGC+AGG 0.586551 3_1:-73558271 Msa0374230:CDS
TCTTGAAATACAGCTACTAG+TGG 0.586782 3_1:+73555898 None:intergenic
AGAACTGGACAACAGTGACC+GGG 0.586985 3_1:-73556279 Msa0374230:CDS
AGAAAGTTCAAAGTGGTCCC+CGG 0.588081 3_1:+73556261 None:intergenic
AGCAGTTTCTCTCATATCAA+AGG 0.589334 3_1:+73559100 None:intergenic
TACAGCTACTAGTGGGACCA+AGG 0.592143 3_1:+73555906 None:intergenic
TAATGAAAGCGATCAAACTC+GGG 0.593238 3_1:+73555959 None:intergenic
AGCTGGCCTTCACAAGGCAT+GGG 0.593280 3_1:-73558449 Msa0374230:CDS
ACGAAATTGGCAGGAGCAGG+CGG 0.593667 3_1:+73557180 None:intergenic
TCAAATATATCGAATGACAT+TGG 0.595472 3_1:-73558316 Msa0374230:CDS
ATTCCACCATACAAAGCTTG+TGG 0.596836 3_1:+73558190 None:intergenic
GACATATTGTCCCACCAGCA+AGG 0.600088 3_1:+73556191 None:intergenic
CTGCCAATTTCGTCGTGCCG+GGG 0.602376 3_1:-73557170 Msa0374230:CDS
TTCAGTTAGAATGAATCTTG+GGG 0.603643 3_1:-73557616 Msa0374230:CDS
AACAAAGAGGAGGCATGCGA+TGG 0.603767 3_1:+73559379 None:intergenic
AAAGATGTTCAGAAGGCTGG+AGG 0.604111 3_1:-73558148 Msa0374230:CDS
GTTAGCTAATGGTGTAGCAA+AGG 0.604530 3_1:-73559123 Msa0374230:CDS
TCCAAAATAAATAAAGGTGT+AGG 0.605868 3_1:-73556139 Msa0374230:CDS
AGTAGTGTATTTGCACCACA+TGG 0.606382 3_1:-73558289 Msa0374230:CDS
AGGGAACCAGAAAGGCCTGA+AGG 0.606461 3_1:+73557678 None:intergenic
CATACCTGATGATAGACCCT+AGG 0.617223 3_1:+73556890 None:intergenic
GAAATACGAATTTACTGTAG+TGG 0.620251 3_1:+73557299 None:intergenic
TATGATTCAAGTCATTATGG+TGG 0.621095 3_1:-73557498 Msa0374230:CDS
ATTTGAGGCCCACCTGAAGG+AGG 0.625374 3_1:+73558031 None:intergenic
AGAACTAGCTGGCCTTCACA+AGG 0.628697 3_1:-73558455 Msa0374230:CDS
CTACTAGCAAGAATCACTGA+TGG 0.635765 3_1:+73558388 None:intergenic
TAAAGGTGTAGGAAAGCTTG+TGG 0.635981 3_1:-73556128 Msa0374230:CDS
CACAAGGCATGGGAACAACA+TGG 0.636359 3_1:-73558439 Msa0374230:CDS
GTTGTCAGTTCAGCTTCAAG+TGG 0.641203 3_1:-73559176 Msa0374230:CDS
ACAGCTACTAGTGGGACCAA+GGG 0.652254 3_1:+73555907 None:intergenic
CTGAAGGAGGAGGCATACCA+AGG 0.655629 3_1:+73558044 None:intergenic
CTTGAAATACAGCTACTAGT+GGG 0.656621 3_1:+73555899 None:intergenic
AGTACCTTGGAAGCATGAAG+AGG 0.656955 3_1:+73559077 None:intergenic
AAGATGTTCAGAAGGCTGGA+GGG 0.658153 3_1:-73558147 Msa0374230:CDS
ATGCCAAACTGGAAACAAAG+AGG 0.660398 3_1:+73559366 None:intergenic
TGGGATCCATAGAGAAATCG+AGG 0.663794 3_1:-73557655 Msa0374230:CDS
GCAGTAGTAGGTGCAAGTGG+AGG 0.669154 3_1:-73556995 Msa0374230:CDS
TCGATGCTCGAAGATTGGGA+TGG 0.670453 3_1:-73559261 Msa0374230:CDS
ACTACTTTGAAGGCAAATGG+TGG 0.671606 3_1:-73558499 Msa0374230:CDS
GATGGATGTTATCCAAGAAG+GGG 0.675440 3_1:-73559243 Msa0374230:CDS
CCAAACTGGAAACAAAGAGG+AGG 0.676783 3_1:+73559369 None:intergenic
TATGCAGCTGATACCTAATG+TGG 0.679757 3_1:-73556311 Msa0374230:intron
TGAGATATGAGGTGACAATG+TGG 0.681915 3_1:+73556051 None:intergenic
GAGAACAATAGTTGGTGACA+TGG 0.682147 3_1:+73557131 None:intergenic
TATTAGCAGAAAGTTCAAAG+TGG 0.683177 3_1:+73556254 None:intergenic
GTAAGTGATCCAAGAAAGGG+TGG 0.686908 3_1:-73556103 Msa0374230:CDS
CTCCTGGAACTGCTACCGAG+AGG 0.707943 3_1:+73558476 None:intergenic
ATGGATGTTATCCAAGAAGG+GGG 0.708511 3_1:-73559242 Msa0374230:CDS
GATTTCTCTATGGATCCCAA+GGG 0.710706 3_1:+73557659 None:intergenic
GAACTGGACAACAGTGACCG+GGG 0.715377 3_1:-73556278 Msa0374230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTGTATATAAATAATTT+AGG + chr3_1:73558664-73558683 None:intergenic 10.0%
!!! TATTTTTAAAAAATGATCAA+TGG + chr3_1:73558801-73558820 None:intergenic 10.0%
!! CATATTATAAAGAATTAAGA+TGG + chr3_1:73555807-73555826 None:intergenic 15.0%
!! CATCTTAATTCTTTATAATA+TGG - chr3_1:73555805-73555824 Msa0374230:three_prime_UTR 15.0%
!! ATATGTTATAATAAGAAACT+AGG - chr3_1:73556987-73557006 Msa0374230:CDS 15.0%
!! TTCCTATTTATAAAAATAGA+TGG - chr3_1:73557284-73557303 Msa0374230:CDS 15.0%
!! TCCTATTTATAAAAATAGAT+GGG - chr3_1:73557285-73557304 Msa0374230:CDS 15.0%
!!! TAACTCAATATTTTAAAAAC+TGG + chr3_1:73557423-73557442 None:intergenic 15.0%
!! TTAACTTAGTAAAGTATAAT+TGG - chr3_1:73558688-73558707 Msa0374230:intron 15.0%
!! TAAAAATATGAAGATAAATG+TGG - chr3_1:73558813-73558832 Msa0374230:intron 15.0%
!! AGAATTGAAATAATTAAATG+TGG - chr3_1:73559353-73559372 Msa0374230:CDS 15.0%
!!! TGAATTGTATATTTTCATTG+AGG + chr3_1:73555781-73555800 None:intergenic 20.0%
!! CCACTATTTAATTAAAATCT+TGG + chr3_1:73556220-73556239 None:intergenic 20.0%
!!! CCAAGATTTTAATTAAATAG+TGG - chr3_1:73556217-73556236 Msa0374230:CDS 20.0%
!!! AGATTTTAATTAAATAGTGG+CGG - chr3_1:73556220-73556239 Msa0374230:CDS 20.0%
!! CCTATTTATAAAAATAGATG+GGG - chr3_1:73557286-73557305 Msa0374230:CDS 20.0%
!! CTATTTATAAAAATAGATGG+GGG - chr3_1:73557287-73557306 Msa0374230:CDS 20.0%
!!! TTTTTCTCTGTCAATAAAAA+AGG - chr3_1:73557471-73557490 Msa0374230:intron 20.0%
!!! TTTTCTCTGTCAATAAAAAA+GGG - chr3_1:73557472-73557491 Msa0374230:intron 20.0%
!! TCAGTTATATTTACAAAATC+AGG + chr3_1:73557643-73557662 None:intergenic 20.0%
!! ACTGCAATTAATTAAATTAC+TGG + chr3_1:73557812-73557831 None:intergenic 20.0%
!!! CATATTTTTTGCTTATATTC+TGG - chr3_1:73558387-73558406 Msa0374230:CDS 20.0%
!! ACATGAAAAATAGTTATAAG+TGG - chr3_1:73558556-73558575 Msa0374230:intron 20.0%
!! CATGAAAAATAGTTATAAGT+GGG - chr3_1:73558557-73558576 Msa0374230:intron 20.0%
!! GAACATTCCAAAATAAATAA+AGG - chr3_1:73559086-73559105 Msa0374230:CDS 20.0%
!! AAGAAAAATTTAATGTACTG+TGG + chr3_1:73559438-73559457 None:intergenic 20.0%
!! TTCTAGAAATTTATTCTCTG+TGG + chr3_1:73556509-73556528 None:intergenic 25.0%
!! AATGAGAAGAGAAAATTTTG+AGG + chr3_1:73556609-73556628 None:intergenic 25.0%
! GAAAAAATGGATGTATCATA+TGG + chr3_1:73556691-73556710 None:intergenic 25.0%
! TCAAATATATCGAATGACAT+TGG - chr3_1:73556915-73556934 Msa0374230:CDS 25.0%
! TTTAGTTAAAGATGTTCAGA+AGG - chr3_1:73557076-73557095 Msa0374230:intron 25.0%
! AAAGTACACTGTTAAACAAA+AGG - chr3_1:73557130-73557149 Msa0374230:CDS 25.0%
! CCAAGAAAATCTATAGATAT+AGG + chr3_1:73557158-73557177 None:intergenic 25.0%
!! CCTATATCTATAGATTTTCT+TGG - chr3_1:73557155-73557174 Msa0374230:CDS 25.0%
! TCCTTATATAGAAAAGAACA+CGG + chr3_1:73557246-73557265 None:intergenic 25.0%
!!! CCCCATCTATTTTTATAAAT+AGG + chr3_1:73557289-73557308 None:intergenic 25.0%
!! TTTTCAGTTAGAATGAATCT+TGG - chr3_1:73557613-73557632 Msa0374230:CDS 25.0%
! TTTCAGTTAGAATGAATCTT+GGG - chr3_1:73557614-73557633 Msa0374230:CDS 25.0%
! ACTTATGATTCAAGTCATTA+TGG - chr3_1:73557730-73557749 Msa0374230:intron 25.0%
! ACTACAGTAAATTCGTATTT+CGG - chr3_1:73557934-73557953 Msa0374230:intron 25.0%
! TCAAAAATTATTCTGCAATG+TGG + chr3_1:73558135-73558154 None:intergenic 25.0%
!! TGTAATATTTGTGTTACTAC+AGG - chr3_1:73558199-73558218 Msa0374230:CDS 25.0%
! CAATAACATCATTAAAACCT+AGG - chr3_1:73558478-73558497 Msa0374230:CDS 25.0%
!!! ATAACATTTTGAGTTTTCCT+AGG + chr3_1:73558498-73558517 None:intergenic 25.0%
! TTCTCATAATATACCACATT+AGG + chr3_1:73558936-73558955 None:intergenic 25.0%
!! TCCAAAATAAATAAAGGTGT+AGG - chr3_1:73559092-73559111 Msa0374230:CDS 25.0%
!!! TCCTACACCTTTATTTATTT+TGG + chr3_1:73559096-73559115 None:intergenic 25.0%
! TTAAGTTTAAGTGAGATATG+AGG + chr3_1:73559194-73559213 None:intergenic 25.0%
! ATATCTCACTTAAACTTAAG+TGG - chr3_1:73559195-73559214 Msa0374230:CDS 25.0%
GTACAAGACCAATTATATAC+AGG + chr3_1:73555759-73555778 None:intergenic 30.0%
!! TGTTTTTGTGTGTCCATTTT+TGG + chr3_1:73555900-73555919 None:intergenic 30.0%
ATCTTGGAAACTATATGCAA+AGG + chr3_1:73556204-73556223 None:intergenic 30.0%
!! TTTTAATTAAATAGTGGCGG+TGG - chr3_1:73556223-73556242 Msa0374230:CDS 30.0%
ATTTGTTTGGAAAAACCATG+TGG - chr3_1:73556357-73556376 Msa0374230:intron 30.0%
AGTAAGAAAAGTCTAGTAGA+TGG - chr3_1:73556416-73556435 Msa0374230:intron 30.0%
TGGATGATATAATTGACACA+TGG - chr3_1:73556436-73556455 Msa0374230:intron 30.0%
GATATAATTGACACATGGTT+AGG - chr3_1:73556441-73556460 Msa0374230:intron 30.0%
!!! ATGATACATCCATTTTTTCC+AGG - chr3_1:73556692-73556711 Msa0374230:intron 30.0%
CATACATATCCTGGAAAAAA+TGG + chr3_1:73556704-73556723 None:intergenic 30.0%
!!! CATTTTTTCCAGGATATGTA+TGG - chr3_1:73556702-73556721 Msa0374230:intron 30.0%
!! GTTTAACAGTGTACTTTTTG+AGG + chr3_1:73557127-73557146 None:intergenic 30.0%
TTTCTTGGATTAAAGATCCT+TGG - chr3_1:73557170-73557189 Msa0374230:CDS 30.0%
! ACCGTGTTCTTTTCTATATA+AGG - chr3_1:73557242-73557261 Msa0374230:CDS 30.0%
TTCAGTTAGAATGAATCTTG+GGG - chr3_1:73557615-73557634 Msa0374230:CDS 30.0%
TATGATTCAAGTCATTATGG+TGG - chr3_1:73557733-73557752 Msa0374230:intron 30.0%
TTCATTCATTCCCTCTTTAT+AGG - chr3_1:73557836-73557855 Msa0374230:intron 30.0%
TGGAATCAGATAAATGATCA+TGG - chr3_1:73557859-73557878 Msa0374230:intron 30.0%
GAAATACGAATTTACTGTAG+TGG + chr3_1:73557935-73557954 None:intergenic 30.0%
AATAGTACTCAACAATGAGA+TGG - chr3_1:73557984-73558003 Msa0374230:intron 30.0%
!!! TCCTTCGAAACATTTTTTAC+AGG + chr3_1:73558024-73558043 None:intergenic 30.0%
! CTTTTGAATCACTTTGTCAA+AGG - chr3_1:73558290-73558309 Msa0374230:CDS 30.0%
ATGGAATCTTACATTTGTTC+TGG - chr3_1:73558361-73558380 Msa0374230:CDS 30.0%
ATTCAGAGCTATGTGAAATA+TGG - chr3_1:73558419-73558438 Msa0374230:CDS 30.0%
!! TTATGTGATTGATTGGTTTG+AGG + chr3_1:73558868-73558887 None:intergenic 30.0%
TCATCAGTTATGTGATTGAT+TGG + chr3_1:73558875-73558894 None:intergenic 30.0%
ATGTGGTATATTATGAGAAC+TGG - chr3_1:73558937-73558956 Msa0374230:intron 30.0%
TATTAGCAGAAAGTTCAAAG+TGG + chr3_1:73558980-73558999 None:intergenic 30.0%
TTGAACTTTCTGCTAATATC+AGG - chr3_1:73558982-73559001 Msa0374230:intron 30.0%
TGAACTTTCTGCTAATATCA+GGG - chr3_1:73558983-73559002 Msa0374230:intron 30.0%
TTAATGAAAGCGATCAAACT+CGG + chr3_1:73559276-73559295 None:intergenic 30.0%
TTTGATCGCTTTCATTAACT+AGG - chr3_1:73559278-73559297 Msa0374230:CDS 30.0%
TAAAAAATATGCTACTCCCT+TGG - chr3_1:73559308-73559327 Msa0374230:CDS 30.0%
TGGCTGCAGTTATGTTATTA+TGG - chr3_1:73555825-73555844 Msa0374230:three_prime_UTR 35.0%
GAAGTAATCATTGCTCATCA+TGG - chr3_1:73555926-73555945 Msa0374230:three_prime_UTR 35.0%
! AGCTAACCTAAGAAGCATAA+AGG + chr3_1:73556095-73556114 None:intergenic 35.0%
! ATGCTTCTTAGGTTAGCTAA+TGG - chr3_1:73556097-73556116 Msa0374230:CDS 35.0%
AGCAGTTTCTCTCATATCAA+AGG + chr3_1:73556134-73556153 None:intergenic 35.0%
!! TCCAAGGTACTTTTCAATCA+TGG - chr3_1:73556166-73556185 Msa0374230:CDS 35.0%
!! TCCATGATTGAAAAGTACCT+TGG + chr3_1:73556170-73556189 None:intergenic 35.0%
!!! AGTGTTTTGATATGTCAACG+CGG + chr3_1:73556303-73556322 None:intergenic 35.0%
TTTCATTTCTCTACACCACA+TGG + chr3_1:73556375-73556394 None:intergenic 35.0%
TGTGGTGTAGAGAAATGAAA+AGG - chr3_1:73556375-73556394 Msa0374230:intron 35.0%
AATGAAAAGGACACATGTAG+AGG - chr3_1:73556388-73556407 Msa0374230:intron 35.0%
! TTTTTCCAGGATATGTATGG+TGG - chr3_1:73556705-73556724 Msa0374230:intron 35.0%
! AACACTACTTTGAAGGCAAA+TGG - chr3_1:73556729-73556748 Msa0374230:intron 35.0%
!!! TTTTTTCCATCTGCATGTGA+AGG + chr3_1:73556890-73556909 None:intergenic 35.0%
CTAAGAGCAATTGCAAAGTT+TGG - chr3_1:73557017-73557036 Msa0374230:intron 35.0%
TAACTTACCAGCATCATTTG+AGG + chr3_1:73557218-73557237 None:intergenic 35.0%
AACCCAACTGCAATGTAAAT+GGG - chr3_1:73557337-73557356 Msa0374230:CDS 35.0%
ATCCCATTTACATTGCAGTT+GGG + chr3_1:73557342-73557361 None:intergenic 35.0%
!! TAAAAACTGGTTTGAACTGC+CGG + chr3_1:73557410-73557429 None:intergenic 35.0%
TTTCAACACTTGAGCAAACT+TGG + chr3_1:73557689-73557708 None:intergenic 35.0%
ATTCATTCCCTCTTTATAGG+TGG - chr3_1:73557839-73557858 Msa0374230:intron 35.0%
TCTGATTCCACCTATAAAGA+GGG + chr3_1:73557849-73557868 None:intergenic 35.0%
ATCTGATTCCACCTATAAAG+AGG + chr3_1:73557850-73557869 None:intergenic 35.0%
ACAATACTTTCACCAAGTAC+AGG - chr3_1:73557961-73557980 Msa0374230:intron 35.0%
TTGAGTACTATTCCTGTACT+TGG + chr3_1:73557976-73557995 None:intergenic 35.0%
!!! CGAAACATTTTTTACAGGCA+TGG + chr3_1:73558019-73558038 None:intergenic 35.0%
GCCTGTAAAAAATGTTTCGA+AGG - chr3_1:73558020-73558039 Msa0374230:intron 35.0%
AGAACCTTGAGAACAATAGT+TGG + chr3_1:73558111-73558130 None:intergenic 35.0%
! TATTTGTGTTACTACAGGAC+AGG - chr3_1:73558204-73558223 Msa0374230:CDS 35.0%
! ATTTGTGTTACTACAGGACA+GGG - chr3_1:73558205-73558224 Msa0374230:CDS 35.0%
GAATCACTTTGTCAAAGGAA+TGG - chr3_1:73558295-73558314 Msa0374230:CDS 35.0%
ATCTACTTGTAGTCTCATCT+TGG - chr3_1:73558516-73558535 Msa0374230:CDS 35.0%
TGAGAAATTAACTCACCGTA+TGG - chr3_1:73558892-73558911 Msa0374230:intron 35.0%
TAATGAAAGCGATCAAACTC+GGG + chr3_1:73559275-73559294 None:intergenic 35.0%
CTTGAAATACAGCTACTAGT+GGG + chr3_1:73559335-73559354 None:intergenic 35.0%
TCTTGAAATACAGCTACTAG+TGG + chr3_1:73559336-73559355 None:intergenic 35.0%
! ATGTGGCTTGATGTGTATTT+TGG - chr3_1:73559370-73559389 Msa0374230:CDS 35.0%
AAAAACTCAAGTGCCATATG+TGG - chr3_1:73559410-73559429 Msa0374230:CDS 35.0%
ATGCCAAACTGGAAACAAAG+AGG + chr3_1:73555868-73555887 None:intergenic 40.0%
GGATGGATGTTATCCAAGAA+GGG - chr3_1:73555987-73556006 Msa0374230:three_prime_UTR 40.0%
GATGGATGTTATCCAAGAAG+GGG - chr3_1:73555988-73556007 Msa0374230:three_prime_UTR 40.0%
ATGGATGTTATCCAAGAAGG+GGG - chr3_1:73555989-73556008 Msa0374230:three_prime_UTR 40.0%
AGTTCAGCTTCAAGTGGTAT+TGG - chr3_1:73556061-73556080 Msa0374230:three_prime_UTR 40.0%
GTTAGCTAATGGTGTAGCAA+AGG - chr3_1:73556108-73556127 Msa0374230:CDS 40.0%
! ACTACTTTGAAGGCAAATGG+TGG - chr3_1:73556732-73556751 Msa0374230:intron 40.0%
AACAACATGGAAAGCTTCCA+TGG - chr3_1:73556805-73556824 Msa0374230:intron 40.0%
GGCATTACAAGTCTATTCCA+TGG + chr3_1:73556825-73556844 None:intergenic 40.0%
CTACTAGCAAGAATCACTGA+TGG + chr3_1:73556846-73556865 None:intergenic 40.0%
TCAGTGATTCTTGCTAGTAG+AGG - chr3_1:73556846-73556865 Msa0374230:intron 40.0%
CAGTGATTCTTGCTAGTAGA+GGG - chr3_1:73556847-73556866 Msa0374230:intron 40.0%
AGTAGTGTATTTGCACCACA+TGG - chr3_1:73556942-73556961 Msa0374230:CDS 40.0%
! GCTTTCAAGAGTTTTCCATG+TGG + chr3_1:73556960-73556979 None:intergenic 40.0%
CATGGAAAACTCTTGAAAGC+AGG - chr3_1:73556960-73556979 Msa0374230:CDS 40.0%
! TTTGGTCCACAAGCTTTGTA+TGG - chr3_1:73557035-73557054 Msa0374230:intron 40.0%
ATTCCACCATACAAAGCTTG+TGG + chr3_1:73557044-73557063 None:intergenic 40.0%
! GCTTTGTATGGTGGAATAGT+TGG - chr3_1:73557047-73557066 Msa0374230:intron 40.0%
GTTAAAGATGTTCAGAAGGC+TGG - chr3_1:73557080-73557099 Msa0374230:intron 40.0%
TTGAACAACGATTGTACCAC+GGG + chr3_1:73557319-73557338 None:intergenic 40.0%
GTTGAACAACGATTGTACCA+CGG + chr3_1:73557320-73557339 None:intergenic 40.0%
CAACCCAACTGCAATGTAAA+TGG - chr3_1:73557336-73557355 Msa0374230:CDS 40.0%
GATCCCATTTACATTGCAGT+TGG + chr3_1:73557343-73557362 None:intergenic 40.0%
GTAAATGGGATCAAACCAAC+CGG - chr3_1:73557351-73557370 Msa0374230:CDS 40.0%
CTGTAACAGAAAGATGAGAG+TGG + chr3_1:73557503-73557522 None:intergenic 40.0%
GATTTCTCTATGGATCCCAA+GGG + chr3_1:73557575-73557594 None:intergenic 40.0%
TCAAAGCCTCGATTTCTCTA+TGG + chr3_1:73557585-73557604 None:intergenic 40.0%
CGAATTTACTGTAGTGGTCA+TGG + chr3_1:73557929-73557948 None:intergenic 40.0%
!! GTTGGTGACATGGATGATAA+TGG + chr3_1:73558093-73558112 None:intergenic 40.0%
!! GAGAACAATAGTTGGTGACA+TGG + chr3_1:73558103-73558122 None:intergenic 40.0%
GTCACCAACTATTGTTCTCA+AGG - chr3_1:73558104-73558123 Msa0374230:CDS 40.0%
GATTATTGCTGCAACTTCAG+AGG - chr3_1:73558265-73558284 Msa0374230:CDS 40.0%
GGAGCAGTTACAGAAGAAAA+AGG + chr3_1:73558323-73558342 None:intergenic 40.0%
TTTCTTCTGTAACTGCTCCT+AGG - chr3_1:73558324-73558343 Msa0374230:CDS 40.0%
TTCTTCTGTAACTGCTCCTA+GGG - chr3_1:73558325-73558344 Msa0374230:CDS 40.0%
TCCTAACTTAGTCCTACGTA+TGG - chr3_1:73558618-73558637 Msa0374230:intron 40.0%
TCCATACGTAGGACTAAGTT+AGG + chr3_1:73558622-73558641 None:intergenic 40.0%
GATGACATAACTCCATACGT+AGG + chr3_1:73558633-73558652 None:intergenic 40.0%
CAGCTGCATAATCAACCATA+CGG + chr3_1:73558910-73558929 None:intergenic 40.0%
TATGCAGCTGATACCTAATG+TGG - chr3_1:73558920-73558939 Msa0374230:intron 40.0%
AGGGAAAGCCTTAGAAGTAA+GGG - chr3_1:73559002-73559021 Msa0374230:intron 40.0%
! TAAAGGTGTAGGAAAGCTTG+TGG - chr3_1:73559103-73559122 Msa0374230:CDS 40.0%
ACCCTTTCTTGGATCACTTA+CGG + chr3_1:73559129-73559148 None:intergenic 40.0%
! GAATTTTCTCAAATGCCTGC+AGG + chr3_1:73559158-73559177 None:intergenic 40.0%
TGAGATATGAGGTGACAATG+TGG + chr3_1:73559183-73559202 None:intergenic 40.0%
TGGTCAATGAGCTTCAGTTA+AGG - chr3_1:73559215-73559234 Msa0374230:CDS 40.0%
CAGTTAAGGTCGAATAGATC+AGG - chr3_1:73559229-73559248 Msa0374230:CDS 40.0%
ATCAGGAGTCCTAATTGATC+TGG - chr3_1:73559246-73559265 Msa0374230:CDS 40.0%
CCAAACTGGAAACAAAGAGG+AGG + chr3_1:73555865-73555884 None:intergenic 45.0%
! CCTCCTCTTTGTTTCCAGTT+TGG - chr3_1:73555862-73555881 Msa0374230:three_prime_UTR 45.0%
GCATCTGCTTCTGCCAAAAA+TGG - chr3_1:73555884-73555903 Msa0374230:three_prime_UTR 45.0%
ATCGTCGATGCTCGAAGATT+GGG - chr3_1:73555966-73555985 Msa0374230:three_prime_UTR 45.0%
GGGATGGATGTTATCCAAGA+AGG - chr3_1:73555986-73556005 Msa0374230:three_prime_UTR 45.0%
GTTGTCAGTTCAGCTTCAAG+TGG - chr3_1:73556055-73556074 Msa0374230:three_prime_UTR 45.0%
! TCAGCTTCAAGTGGTATTGG+TGG - chr3_1:73556064-73556083 Msa0374230:three_prime_UTR 45.0%
! AGTACCTTGGAAGCATGAAG+AGG + chr3_1:73556157-73556176 None:intergenic 45.0%
CGCACTTGCAGACATTTGTT+TGG - chr3_1:73556344-73556363 Msa0374230:intron 45.0%
TGTTGCCACCATACATATCC+TGG + chr3_1:73556713-73556732 None:intergenic 45.0%
TGGTGGCAACACTACTTTGA+AGG - chr3_1:73556722-73556741 Msa0374230:intron 45.0%
ACCATACCTTCACATGCAGA+TGG - chr3_1:73556881-73556900 Msa0374230:intron 45.0%
TCCATCTGCATGTGAAGGTA+TGG + chr3_1:73556885-73556904 None:intergenic 45.0%
AAAGATGTTCAGAAGGCTGG+AGG - chr3_1:73557083-73557102 Msa0374230:intron 45.0%
AAGATGTTCAGAAGGCTGGA+GGG - chr3_1:73557084-73557103 Msa0374230:intron 45.0%
GCACAATATGAGCTTCCTTC+AGG - chr3_1:73557538-73557557 Msa0374230:CDS 45.0%
CGATTTCTCTATGGATCCCA+AGG + chr3_1:73557576-73557595 None:intergenic 45.0%
TGGGATCCATAGAGAAATCG+AGG - chr3_1:73557576-73557595 Msa0374230:CDS 45.0%
!! GATGATAATGGTCTCTTCCC+CGG + chr3_1:73558081-73558100 None:intergenic 45.0%
AGGGAAGTGAAAGCAGTAGT+AGG - chr3_1:73558224-73558243 Msa0374230:CDS 45.0%
AAAGCAGTAGTAGGTGCAAG+TGG - chr3_1:73558233-73558252 Msa0374230:CDS 45.0%
CATACCTGATGATAGACCCT+AGG + chr3_1:73558344-73558363 None:intergenic 45.0%
CTAGGGTCTATCATCAGGTA+TGG - chr3_1:73558342-73558361 Msa0374230:CDS 45.0%
GGATGTACAGCAAGATCACA+AGG - chr3_1:73558834-73558853 Msa0374230:intron 45.0%
AGAAAGTTCAAAGTGGTCCC+CGG + chr3_1:73558973-73558992 None:intergenic 45.0%
CAGGGAAAGCCTTAGAAGTA+AGG - chr3_1:73559001-73559020 Msa0374230:intron 45.0%
GCCGTAAGTGATCCAAGAAA+GGG - chr3_1:73559125-73559144 Msa0374230:CDS 45.0%
GTAAGTGATCCAAGAAAGGG+TGG - chr3_1:73559128-73559147 Msa0374230:CDS 45.0%
ATGTACTGTGGCTCCACATA+TGG + chr3_1:73559426-73559445 None:intergenic 45.0%
! AACAAAGAGGAGGCATGCGA+TGG + chr3_1:73555855-73555874 None:intergenic 50.0%
!! CTTCGAGCATCGACGATCAT+CGG + chr3_1:73555963-73555982 None:intergenic 50.0%
GATCGTCGATGCTCGAAGAT+TGG - chr3_1:73555965-73555984 Msa0374230:three_prime_UTR 50.0%
TCGATGCTCGAAGATTGGGA+TGG - chr3_1:73555970-73555989 Msa0374230:three_prime_UTR 50.0%
TGTGGCTGCTGCTCTTTGTT+TGG - chr3_1:73556030-73556049 Msa0374230:three_prime_UTR 50.0%
! GTGGCTGCTGCTCTTTGTTT+GGG - chr3_1:73556031-73556050 Msa0374230:three_prime_UTR 50.0%
!! GCTTCAAGTGGTATTGGTGG+CGG - chr3_1:73556067-73556086 Msa0374230:exon 50.0%
GCGGTGCCTTTATGCTTCTT+AGG - chr3_1:73556086-73556105 Msa0374230:CDS 50.0%
TGCTCCTCTTCATGCTTCCA+AGG - chr3_1:73556150-73556169 Msa0374230:CDS 50.0%
TTAAATAGTGGCGGTGGACG+AGG - chr3_1:73556229-73556248 Msa0374230:CDS 50.0%
ATCTGATGCAGCCTCAATCG+CGG - chr3_1:73556268-73556287 Msa0374230:CDS 50.0%
ATGTCTGCAAGTGCGCAACT+TGG + chr3_1:73556339-73556358 None:intergenic 50.0%
!! AGAACTAGCTGGCCTTCACA+AGG - chr3_1:73556776-73556795 Msa0374230:intron 50.0%
GTTGTTCCCATGCCTTGTGA+AGG + chr3_1:73556791-73556810 None:intergenic 50.0%
CACAAGGCATGGGAACAACA+TGG - chr3_1:73556792-73556811 Msa0374230:intron 50.0%
! GGTCCACAAGCTTTGTATGG+TGG - chr3_1:73557038-73557057 Msa0374230:intron 50.0%
GGCTGGAGGGATATTGACAT+TGG - chr3_1:73557097-73557116 Msa0374230:intron 50.0%
! ATCATTTGAGGCCCACCTGA+AGG + chr3_1:73557206-73557225 None:intergenic 50.0%
AATGGGATCAAACCAACCGG+CGG - chr3_1:73557354-73557373 Msa0374230:CDS 50.0%
AGGTTGAACCGGAAACCAGA+CGG + chr3_1:73557381-73557400 None:intergenic 50.0%
TCCGGTTCAACCTGTTGATC+CGG - chr3_1:73557388-73557407 Msa0374230:intron 50.0%
GTTTGAACTGCCGGATCAAC+AGG + chr3_1:73557401-73557420 None:intergenic 50.0%
TGCTCCTAGGGTCTATCATC+AGG - chr3_1:73558337-73558356 Msa0374230:CDS 50.0%
GAGAACTGGACAACAGTGAC+CGG - chr3_1:73558951-73558970 Msa0374230:intron 50.0%
AGAACTGGACAACAGTGACC+GGG - chr3_1:73558952-73558971 Msa0374230:intron 50.0%
GGACATGGCCCTTACTTCTA+AGG + chr3_1:73559013-73559032 None:intergenic 50.0%
GACATATTGTCCCACCAGCA+AGG + chr3_1:73559043-73559062 None:intergenic 50.0%
GGCCGTAAGTGATCCAAGAA+AGG - chr3_1:73559124-73559143 Msa0374230:CDS 50.0%
GCAGGAAAACCACCCTTTCT+TGG + chr3_1:73559140-73559159 None:intergenic 50.0%
! AGAAAGGGTGGTTTTCCTGC+AGG - chr3_1:73559140-73559159 Msa0374230:CDS 50.0%
CTCGGGACTCCAGATCAATT+AGG + chr3_1:73559258-73559277 None:intergenic 50.0%
ACAGCTACTAGTGGGACCAA+GGG + chr3_1:73559327-73559346 None:intergenic 50.0%
TACAGCTACTAGTGGGACCA+AGG + chr3_1:73559328-73559347 None:intergenic 50.0%
GGCAGAAGCAGATGCCAAAC+TGG + chr3_1:73555879-73555898 None:intergenic 55.0%
ACATGCAGTGGATGCAGCTG+TGG - chr3_1:73556012-73556031 Msa0374230:three_prime_UTR 55.0%
GAAGGCAAATGGTGGCCTCT+CGG - chr3_1:73556740-73556759 Msa0374230:intron 55.0%
GCAGTTCCAGGAGAACTAGC+TGG - chr3_1:73556765-73556784 Msa0374230:intron 55.0%
! TGAAGGCCAGCTAGTTCTCC+TGG + chr3_1:73556774-73556793 None:intergenic 55.0%
!! TAGCTGGCCTTCACAAGGCA+TGG - chr3_1:73556781-73556800 Msa0374230:intron 55.0%
!! AGCTGGCCTTCACAAGGCAT+GGG - chr3_1:73556782-73556801 Msa0374230:intron 55.0%
! CTGAAGGAGGAGGCATACCA+AGG + chr3_1:73557190-73557209 None:intergenic 55.0%
CTTGGTATGCCTCCTCCTTC+AGG - chr3_1:73557188-73557207 Msa0374230:CDS 55.0%
GTATGCCTCCTCCTTCAGGT+GGG - chr3_1:73557192-73557211 Msa0374230:CDS 55.0%
! ATTTGAGGCCCACCTGAAGG+AGG + chr3_1:73557203-73557222 None:intergenic 55.0%
AGGTGGGCCTCAAATGATGC+TGG - chr3_1:73557208-73557227 Msa0374230:CDS 55.0%
! GCCGGATCAACAGGTTGAAC+CGG + chr3_1:73557392-73557411 None:intergenic 55.0%
GAGCTTCCTTCAGGCCTTTC+TGG - chr3_1:73557547-73557566 Msa0374230:CDS 55.0%
AGGGAACCAGAAAGGCCTGA+AGG + chr3_1:73557556-73557575 None:intergenic 55.0%
!! TCAGGCCTTTCTGGTTCCCT+TGG - chr3_1:73557556-73557575 Msa0374230:CDS 55.0%
!! CAGGCCTTTCTGGTTCCCTT+GGG - chr3_1:73557557-73557576 Msa0374230:CDS 55.0%
GGATCCCAAGGGAACCAGAA+AGG + chr3_1:73557564-73557583 None:intergenic 55.0%
ACGAAATTGGCAGGAGCAGG+CGG + chr3_1:73558054-73558073 None:intergenic 55.0%
ACGACGAAATTGGCAGGAGC+AGG + chr3_1:73558057-73558076 None:intergenic 55.0%
TCCTGCCAATTTCGTCGTGC+CGG - chr3_1:73558059-73558078 Msa0374230:CDS 55.0%
GCAGTAGTAGGTGCAAGTGG+AGG - chr3_1:73558236-73558255 Msa0374230:CDS 55.0%
GTGGGACAGCTCTCATGACA+TGG - chr3_1:73558575-73558594 Msa0374230:intron 55.0%
GAACTGGACAACAGTGACCG+GGG - chr3_1:73558953-73558972 Msa0374230:intron 55.0%
!! CAGCAAGGCTCTGAAGGACA+TGG + chr3_1:73559028-73559047 None:intergenic 55.0%
CATGTCCTTCAGAGCCTTGC+TGG - chr3_1:73559026-73559045 Msa0374230:intron 55.0%
TCCTTCAGAGCCTTGCTGGT+GGG - chr3_1:73559030-73559049 Msa0374230:intron 55.0%
CCACTGCATGTCCCCCTTCT+TGG + chr3_1:73556003-73556022 None:intergenic 60.0%
CCAAGAAGGGGGACATGCAG+TGG - chr3_1:73556000-73556019 Msa0374230:three_prime_UTR 60.0%
CTCCTGGAACTGCTACCGAG+AGG + chr3_1:73556758-73556777 None:intergenic 60.0%
GGTATGCCTCCTCCTTCAGG+TGG - chr3_1:73557191-73557210 Msa0374230:CDS 60.0%
!! TAGATGGGGGCATTGTCCCG+TGG - chr3_1:73557300-73557319 Msa0374230:CDS 60.0%
CCTGCCAATTTCGTCGTGCC+GGG - chr3_1:73558060-73558079 Msa0374230:CDS 60.0%
CTGCCAATTTCGTCGTGCCG+GGG - chr3_1:73558061-73558080 Msa0374230:CDS 60.0%
CTTCCCCGGCACGACGAAAT+TGG + chr3_1:73558067-73558086 None:intergenic 60.0%
GTCCTTCAGAGCCTTGCTGG+TGG - chr3_1:73559029-73559048 Msa0374230:intron 60.0%
! TCCCACCAGCAAGGCTCTGA+AGG + chr3_1:73559034-73559053 None:intergenic 60.0%
GGTCAGCGCAACCGCGATTG+AGG + chr3_1:73556282-73556301 None:intergenic 65.0%
GGCCTCTCGGTAGCAGTTCC+AGG - chr3_1:73556753-73556772 Msa0374230:intron 65.0%
TGAGGCCCACCTGAAGGAGG+AGG + chr3_1:73557200-73557219 None:intergenic 65.0%
AAACCAACCGGCGGACCGTC+TGG - chr3_1:73557363-73557382 Msa0374230:CDS 65.0%
AAACCAGACGGTCCGCCGGT+TGG + chr3_1:73557369-73557388 None:intergenic 65.0%
CCCGGCACGACGAAATTGGC+AGG + chr3_1:73558063-73558082 None:intergenic 65.0%
CCGGAAACCAGACGGTCCGC+CGG + chr3_1:73557373-73557392 None:intergenic 70.0%
! CCGGCGGACCGTCTGGTTTC+CGG - chr3_1:73557370-73557389 Msa0374230:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73555756 73559497 73555756 ID=Msa0374230;Name=Msa0374230
chr3_1 mRNA 73555756 73559497 73555756 ID=Msa0374230-mRNA-1;Parent=Msa0374230;Name=Msa0374230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=68|1|1|1|1|1|6|328|582
chr3_1 exon 73555756 73556326 73555756 ID=Msa0374230-mRNA-1:exon:16741;Parent=Msa0374230-mRNA-1
chr3_1 exon 73556895 73557032 73556895 ID=Msa0374230-mRNA-1:exon:16740;Parent=Msa0374230-mRNA-1
chr3_1 exon 73557128 73557395 73557128 ID=Msa0374230-mRNA-1:exon:16739;Parent=Msa0374230-mRNA-1
chr3_1 exon 73557495 73557730 73557495 ID=Msa0374230-mRNA-1:exon:16738;Parent=Msa0374230-mRNA-1
chr3_1 exon 73558024 73558539 73558024 ID=Msa0374230-mRNA-1:exon:16737;Parent=Msa0374230-mRNA-1
chr3_1 exon 73559082 73559497 73559082 ID=Msa0374230-mRNA-1:exon:16736;Parent=Msa0374230-mRNA-1
chr3_1 five_prime_UTR 73559430 73559497 73559430 ID=Msa0374230-mRNA-1:five_prime_utr;Parent=Msa0374230-mRNA-1
chr3_1 CDS 73559082 73559429 73559082 ID=Msa0374230-mRNA-1:cds;Parent=Msa0374230-mRNA-1
chr3_1 CDS 73558024 73558539 73558024 ID=Msa0374230-mRNA-1:cds;Parent=Msa0374230-mRNA-1
chr3_1 CDS 73557495 73557730 73557495 ID=Msa0374230-mRNA-1:cds;Parent=Msa0374230-mRNA-1
chr3_1 CDS 73557128 73557395 73557128 ID=Msa0374230-mRNA-1:cds;Parent=Msa0374230-mRNA-1
chr3_1 CDS 73556895 73557032 73556895 ID=Msa0374230-mRNA-1:cds;Parent=Msa0374230-mRNA-1
chr3_1 CDS 73556084 73556326 73556084 ID=Msa0374230-mRNA-1:cds;Parent=Msa0374230-mRNA-1
chr3_1 three_prime_UTR 73555756 73556083 73555756 ID=Msa0374230-mRNA-1:three_prime_utr;Parent=Msa0374230-mRNA-1
Gene Sequence

>Msa0374230

ATGGCTGCAGTTATGTTATTATGGCGTGCCATCGCATGCCTCCTCTTTGTTTCCAGTTTGGCATCTGCTTCTGCCAAAAATGGACACACAAAAACAAGAAATGAAGTAATCATTGCTCATCATGGAGCTGTTGCAACCGATGATCGTCGATGCTCGAAGATTGGGATGGATGTTATCCAAGAAGGGGGACATGCAGTGGATGCAGCTGTGGCTGCTGCTCTTTGTTTGGGAGTTGTCAGTTCAGCTTCAAGTGGTATTGGTGGCGGTGCCTTTATGCTTCTTAGGTTAGCTAATGGTGTAGCAAAGGCCTTTGATATGAGAGAAACTGCTCCTCTTCATGCTTCCAAGGATATGTATGGTGGCAACACTACTTTGAAGGCAAATGGTGGCCTCTCGGTAGCAGTTCCAGGAGAACTAGCTGGCCTTCACAAGGCATGGGAACAACATGGAAAGCTTCCATGGAATAGACTTGTAATGCCATCAGTGATTCTTGCTAGTAGAGGGTTTAAAATATCACCATACCTTCACATGCAGATGGAAAAAACAGAATCAAATATATCGAATGACATTGGTCTTAGTAGTGTATTTGCACCACATGGAAAACTCTTGAAAGCAGGTGAAATATGTTATAATAAGAAACTAGGAGAAACTCTAAGAGCAATTGCAAAGTTTGGTCCACAAGCTTTGTATGGTGGAATAGTTGGCATTAATTTAGTTAAAGATGTTCAGAAGGCTGGAGGGATATTGACATTGGAAGACCTCAAAAAGTACACTGTTAAACAAAAGGAACCTATATCTATAGATTTTCTTGGATTAAAGATCCTTGGTATGCCTCCTCCTTCAGGTGGGCCTCAAATGATGCTGCTGCTGAACATTCTAGCACAATATGAGCTTCCTTCAGGCCTTTCTGGTTCCCTTGGGATCCATAGAGAAATCGAGGCTTTGAAACATGTATTTTCAGTTAGAATGAATCTTGGGGATCCTGATTTTGTAAATATAACTGAAGTTCTTTCTGACATGCTTTCTACCAAGTTTGCTCAAGTGTTGAAAAAAGACATCAATGATAATAAGACTTATGATTCAAGTCATTATGGTGGCAAGTGGAATCAGATAAATGATCATGGTACAAGTCATTTAAGCATAATAGATTTTGAGAGAAATGCTGTTTCCATGACCACTACAGTAAATTCGTATTTCGGTGCAACAATACTTTCACCAAGTACAGGAATAGTACTCAACAATGAGATGGATGATTTTTCCATGCCTGTAAAAAATGTTTCGAAGGATGTTCGACCGCCTGCTCCTGCCAATTTCGTCGTGCCGGGGAAGAGACCATTATCATCCATGTCACCAACTATTGTTCTCAAGGACAGGGAAGTGAAAGCAGTAGTAGGTGCAAGTGGAGGAATTATGATTATTGCTGCAACTTCAGAGGTTCTTTTGAATCACTTTGTCAAAGGAATGGATCCTTTTTCTTCTGTAACTGCTCCTAGGGTCTATCATCAGCTGATACCTAATGTGGTATATTATGAGAACTGGACAACAGTGACCGGGGACCACTTTGAACTTTCTGCTAATATCAGGGAAAGCCTTAGAAGTAAGGGCCATGTCCTTCAGAGCCTTGCTGGTGGGACAATATGTCAATTTATCGTTTCAGACACTTCTGAACATTCCAAAATAAATAAAGGTGTAGGAAAGCTTGTGGCCGTAAGTGATCCAAGAAAGGGTGGTTTTCCTGCAGGCATTTGA
Protein sequence

>Msa0374230

MAAVMLLWRAIACLLFVSSLASASAKNGHTKTRNEVIIAHHGAVATDDRRCSKIGMDVIQEGGHAVDAAVAAALCLGVVSSASSGIGGGAFMLLRLANGVAKAFDMRETAPLHASKDMYGGNTTLKANGGLSVAVPGELAGLHKAWEQHGKLPWNRLVMPSVILASRGFKISPYLHMQMEKTESNISNDIGLSSVFAPHGKLLKAGEICYNKKLGETLRAIAKFGPQALYGGIVGINLVKDVQKAGGILTLEDLKKYTVKQKEPISIDFLGLKILGMPPPSGGPQMMLLLNILAQYELPSGLSGSLGIHREIEALKHVFSVRMNLGDPDFVNITEVLSDMLSTKFAQVLKKDINDNKTYDSSHYGGKWNQINDHGTSHLSIIDFERNAVSMTTTVNSYFGATILSPSTGIVLNNEMDDFSMPVKNVSKDVRPPAPANFVVPGKRPLSSMSPTIVLKDREVKAVVGASGGIMIIAATSEVLLNHFVKGMDPFSSVTAPRVYHQLIPNVVYYENWTTVTGDHFELSANIRESLRSKGHVLQSLAGGTICQFIVSDTSEHSKINKGVGKLVAVSDPRKGGFPAGI*