Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357550 | AES72274.2 | 97.423 | 582 | 15 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357550 | sp|Q8VYW6|GAGT1_ARATH | 63.903 | 579 | 199 | 5 | 5 | 581 | 1 | 571 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357550 | G7J4F1 | 97.423 | 582 | 15 | 0 | 1 | 582 | 1 | 582 | 0.0 | 1167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1357550 | Msa1402340 | 0.800012 | 1.759479e-48 | -8.615850e-47 |
| Msa0694170 | Msa1357550 | 0.800299 | 1.538262e-48 | -8.615850e-47 |
| Msa0192290 | Msa1357550 | -0.810675 | 1.024634e-50 | -8.615850e-47 |
| Msa1264300 | Msa1357550 | 0.813196 | 2.892699e-51 | -8.615850e-47 |
| Msa1334350 | Msa1357550 | 0.801838 | 7.452921e-49 | -8.615850e-47 |
| Msa0374230 | Msa1357550 | 0.992193 | 7.700087e-192 | -8.615850e-47 |
| Msa0384130 | Msa1357550 | 0.817022 | 4.089739e-52 | -8.615850e-47 |
| Msa0396640 | Msa1357550 | 0.805812 | 1.114218e-49 | -8.615850e-47 |
| Msa0469880 | Msa1357550 | 0.838203 | 3.306865e-57 | -8.615850e-47 |
| Msa0478750 | Msa1357550 | 0.801217 | 9.990843e-49 | -8.615850e-47 |
| Msa1044520 | Msa1357550 | 0.807796 | 4.243947e-50 | -8.615850e-47 |
| Msa0301260 | Msa1357550 | -0.802968 | 4.361024e-49 | -8.615850e-47 |
| Msa0313050 | Msa1357550 | -0.813796 | 2.135413e-51 | -8.615850e-47 |
| Msa0515350 | Msa1357550 | 0.981982 | 6.198268e-154 | -8.615850e-47 |
| Msa0522830 | Msa1357550 | 0.811054 | 8.482313e-51 | -8.615850e-47 |
| Msa0526250 | Msa1357550 | -0.808229 | 3.432025e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357550 | MtrunA17_Chr3g0124611 | 97.409 | 579 | 15 | 0 | 4 | 582 | 9 | 587 | 0.0 | 1162 |
| Msa1357550 | MtrunA17_Chr3g0106781 | 75.045 | 561 | 139 | 1 | 22 | 582 | 18 | 577 | 0.0 | 854 |
| Msa1357550 | MtrunA17_Chr6g0487461 | 52.028 | 567 | 259 | 4 | 28 | 582 | 58 | 623 | 0.0 | 551 |
| Msa1357550 | MtrunA17_Chr5g0438351 | 86.792 | 106 | 14 | 0 | 11 | 116 | 21 | 126 | 1.31e-39 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357550 | AT4G39640.1 | 63.903 | 579 | 199 | 5 | 5 | 581 | 1 | 571 | 0.0 | 746 |
| Msa1357550 | AT4G39640.2 | 63.903 | 579 | 199 | 5 | 5 | 581 | 1 | 571 | 0.0 | 746 |
| Msa1357550 | AT4G39650.1 | 63.823 | 586 | 198 | 7 | 1 | 581 | 1 | 577 | 0.0 | 727 |
| Msa1357550 | AT4G29210.1 | 49.298 | 570 | 267 | 6 | 32 | 582 | 71 | 637 | 0.0 | 557 |
| Msa1357550 | AT4G29210.2 | 51.402 | 428 | 204 | 4 | 32 | 456 | 71 | 497 | 6.91e-156 | 457 |
| Msa1357550 | AT1G69820.1 | 71.556 | 225 | 63 | 1 | 286 | 509 | 1 | 225 | 2.05e-114 | 340 |
Find 171 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTCCTTCAGGCCTTTC+TGG | 0.074565 | tig0016097:+7843 | Msa1357550:CDS |
| TCCTACACCTTTATTTATTT+TGG | 0.084530 | tig0016097:-9392 | None:intergenic |
| CATCTTAATTCTTTATAATA+TGG | 0.189228 | tig0016097:+6099 | Msa1357550:exon |
| AATCATTTATCAAAGTAAAA+TGG | 0.242721 | tig0016097:+9777 | Msa1357550:three_prime_UTR |
| TGCTGTAACCTGTATATAAT+TGG | 0.247789 | tig0016097:+6042 | None:intergenic |
| TTGAACTTTCTGCTAATATC+AGG | 0.251199 | tig0016097:+9281 | Msa1357550:CDS |
| TGTGGCTGCTGCTCTTTGTT+TGG | 0.260299 | tig0016097:+6324 | Msa1357550:CDS |
| CATGTCCTTCAGAGCCTTGC+TGG | 0.265745 | tig0016097:+9325 | Msa1357550:CDS |
| GCAGGAAAACCACCCTTTCT+TGG | 0.267405 | tig0016097:-9436 | None:intergenic |
| GCGGTGCCTTTATGCTTCTT+AGG | 0.281278 | tig0016097:+6380 | Msa1357550:CDS |
| TCAGTTATATTTACAAAATC+AGG | 0.292693 | tig0016097:-7936 | None:intergenic |
| ATGTGGCTTGATGTGTATTT+TGG | 0.296049 | tig0016097:+9669 | Msa1357550:three_prime_UTR |
| CCTCCTCTTTGTTTCCAGTT+TGG | 0.297674 | tig0016097:+6156 | Msa1357550:CDS |
| TGGCTGCAGTTATGTTATTA+TGG | 0.301381 | tig0016097:+6119 | Msa1357550:CDS |
| TCAAAGCCTCGATTTCTCTA+TGG | 0.303562 | tig0016097:-7878 | None:intergenic |
| CTTGGTATGCCTCCTCCTTC+AGG | 0.309472 | tig0016097:+7482 | Msa1357550:CDS |
| CTAAGAGCAATTGCAAAGTT+TGG | 0.312938 | tig0016097:+7311 | Msa1357550:CDS |
| GTGGCTGCTGCTCTTTGTTT+GGG | 0.314878 | tig0016097:+6325 | Msa1357550:CDS |
| ACTTATGATTCAAGTCATTA+TGG | 0.319436 | tig0016097:+8026 | Msa1357550:CDS |
| GGACATGGCCCTTACTTCTA+AGG | 0.324451 | tig0016097:-9309 | None:intergenic |
| TCAGGCCTTTCTGGTTCCCT+TGG | 0.331021 | tig0016097:+7852 | Msa1357550:CDS |
| CTTCCCCGGCACGACGAAAT+TGG | 0.336481 | tig0016097:-8363 | None:intergenic |
| GGAGCAGTTACAGAAGAAAA+AGG | 0.352470 | tig0016097:-8619 | None:intergenic |
| GATCGTCGATGCTCGAAGAT+TGG | 0.359812 | tig0016097:+6259 | Msa1357550:CDS |
| TTTCAGTTAGAATGAATCTT+GGG | 0.364796 | tig0016097:+7910 | Msa1357550:CDS |
| GGCCTCTCGGTAGCAGTTCC+AGG | 0.369742 | tig0016097:+7047 | Msa1357550:CDS |
| CAGGCCTTTCTGGTTCCCTT+GGG | 0.372651 | tig0016097:+7853 | Msa1357550:CDS |
| ACTACAGTAAATTCGTATTT+CGG | 0.375583 | tig0016097:+8233 | Msa1357550:CDS |
| CCAAGAAAATCTATAGATAT+AGG | 0.377085 | tig0016097:-7449 | None:intergenic |
| TTTCTTCTGTAACTGCTCCT+AGG | 0.377805 | tig0016097:+8623 | Msa1357550:CDS |
| ATCGTCGATGCTCGAAGATT+GGG | 0.379068 | tig0016097:+6260 | Msa1357550:CDS |
| GAACATTCCAAAATAAATAA+AGG | 0.380999 | tig0016097:+9385 | Msa1357550:CDS |
| CCTGCCAATTTCGTCGTGCC+GGG | 0.393581 | tig0016097:+8359 | Msa1357550:CDS |
| GTTAAAGATGTTCAGAAGGC+TGG | 0.400636 | tig0016097:+7374 | Msa1357550:CDS |
| TCCTGCCAATTTCGTCGTGC+CGG | 0.409726 | tig0016097:+8358 | Msa1357550:CDS |
| ATGTGGTATATTATGAGAAC+TGG | 0.410439 | tig0016097:+9236 | Msa1357550:CDS |
| GCACAATATGAGCTTCCTTC+AGG | 0.410702 | tig0016097:+7834 | Msa1357550:CDS |
| GGCAGAAGCAGATGCCAAAC+TGG | 0.410790 | tig0016097:-6170 | None:intergenic |
| ATGTACTGTGGCTCCACATA+TGG | 0.411147 | tig0016097:-9722 | None:intergenic |
| AGTTCAGCTTCAAGTGGTAT+TGG | 0.425763 | tig0016097:+6355 | Msa1357550:CDS |
| TTCTTCTGTAACTGCTCCTA+GGG | 0.425863 | tig0016097:+8624 | Msa1357550:CDS |
| GCTTTGTATGGTGGAATAGT+TGG | 0.425952 | tig0016097:+7341 | Msa1357550:CDS |
| ATGCTTCTTAGGTTAGCTAA+TGG | 0.427061 | tig0016097:+6391 | Msa1357550:CDS |
| ACCCTTTCTTGGATCACTTA+CGG | 0.430481 | tig0016097:-9425 | None:intergenic |
| CTCGGGACTCCAGATCAATT+AGG | 0.436728 | tig0016097:-9554 | None:intergenic |
| AGCTAACCTAAGAAGCATAA+AGG | 0.439391 | tig0016097:-6386 | None:intergenic |
| TTTCTTGGATTAAAGATCCT+TGG | 0.439838 | tig0016097:+7464 | Msa1357550:CDS |
| ATCAGGAGTCCTAATTGATC+TGG | 0.440048 | tig0016097:+9545 | Msa1357550:three_prime_UTR |
| CAGGGAAAGCCTTAGAAGTA+AGG | 0.450851 | tig0016097:+9300 | Msa1357550:CDS |
| TTTGGTCCACAAGCTTTGTA+TGG | 0.452119 | tig0016097:+7329 | Msa1357550:CDS |
| TTCTCATAATATACCACATT+AGG | 0.453122 | tig0016097:-9232 | None:intergenic |
| GAATCACTTTGTCAAAGGAA+TGG | 0.453749 | tig0016097:+8594 | Msa1357550:CDS |
| AGCAGGCGGTCGAACATCCT+TGG | 0.454513 | tig0016097:-8336 | None:intergenic |
| TTTCAACACTTGAGCAAACT+TGG | 0.459644 | tig0016097:-7982 | None:intergenic |
| TGAAGGCCAGCTAGTTCTCC+TGG | 0.462220 | tig0016097:-7065 | None:intergenic |
| TTGAGTACTATTCCTGTACT+TGG | 0.467003 | tig0016097:-8272 | None:intergenic |
| TGCTCCTAGGGTCTATCATC+AGG | 0.468787 | tig0016097:+8636 | Msa1357550:CDS |
| AAAGTACACTGTTAAACAAA+AGG | 0.472586 | tig0016097:+7424 | Msa1357550:CDS |
| ACGACGAAATTGGCAGGAGC+AGG | 0.472614 | tig0016097:-8353 | None:intergenic |
| CAGTTAAGGTCGAATAGATC+AGG | 0.479105 | tig0016097:+9528 | Msa1357550:three_prime_UTR |
| AACACTACTTTGAAGGCAAA+TGG | 0.481370 | tig0016097:+7023 | Msa1357550:CDS |
| TCCTTCAGAGCCTTGCTGGT+GGG | 0.483076 | tig0016097:+9329 | Msa1357550:CDS |
| ATATCTCACTTAAACTTAAG+TGG | 0.484133 | tig0016097:+9494 | Msa1357550:three_prime_UTR |
| TAACTTACCAGCATCATTTG+AGG | 0.485318 | tig0016097:-7509 | None:intergenic |
| TGGTGGCAACACTACTTTGA+AGG | 0.485618 | tig0016097:+7016 | Msa1357550:CDS |
| CGAATTTACTGTAGTGGTCA+TGG | 0.494343 | tig0016097:-8225 | None:intergenic |
| AGGGAAGTGAAAGCAGTAGT+AGG | 0.496539 | tig0016097:+8523 | Msa1357550:CDS |
| CAGTGATTCTTGCTAGTAGA+GGG | 0.498771 | tig0016097:+7141 | Msa1357550:CDS |
| GAGAACTGGACAACAGTGAC+CGG | 0.499140 | tig0016097:+9250 | Msa1357550:CDS |
| CGATTTCTCTATGGATCCCA+AGG | 0.500870 | tig0016097:-7869 | None:intergenic |
| AACAACATGGAAAGCTTCCA+TGG | 0.507183 | tig0016097:+7099 | Msa1357550:CDS |
| TCCATCTGCATGTGAAGGTA+TGG | 0.508355 | tig0016097:-7176 | None:intergenic |
| CCCGGCACGACGAAATTGGC+AGG | 0.508773 | tig0016097:-8359 | None:intergenic |
| TGGTCAATGAGCTTCAGTTA+AGG | 0.509429 | tig0016097:+9514 | Msa1357550:three_prime_UTR |
| TTTGATCGCTTTCATTAACT+AGG | 0.510500 | tig0016097:+9577 | Msa1357550:three_prime_UTR |
| GAAGTAATCATTGCTCATCA+TGG | 0.511179 | tig0016097:+6220 | Msa1357550:CDS |
| GTACAAGACCAATTATATAC+AGG | 0.516352 | tig0016097:-6050 | None:intergenic |
| TAGCTGGCCTTCACAAGGCA+TGG | 0.517657 | tig0016097:+7075 | Msa1357550:CDS |
| GATGATAATGGTCTCTTCCC+CGG | 0.518164 | tig0016097:-8377 | None:intergenic |
| CTTCGAGCATCGACGATCAT+CGG | 0.519186 | tig0016097:-6254 | None:intergenic |
| TCCCACCAGCAAGGCTCTGA+AGG | 0.522177 | tig0016097:-9330 | None:intergenic |
| GTCACCAACTATTGTTCTCA+AGG | 0.525838 | tig0016097:+8403 | Msa1357550:CDS |
| ACATGCAGTGGATGCAGCTG+TGG | 0.526599 | tig0016097:+6306 | Msa1357550:CDS |
| GGCCGTAAGTGATCCAAGAA+AGG | 0.530949 | tig0016097:+9423 | Msa1357550:CDS |
| GTCCTTCAGAGCCTTGCTGG+TGG | 0.531940 | tig0016097:+9328 | Msa1357550:CDS |
| TTTAGTTAAAGATGTTCAGA+AGG | 0.532577 | tig0016097:+7370 | Msa1357550:CDS |
| GTTGGTGACATGGATGATAA+TGG | 0.536093 | tig0016097:-8389 | None:intergenic |
| ATATGTTATAATAAGAAACT+AGG | 0.536973 | tig0016097:+7281 | Msa1357550:CDS |
| GGGATGGATGTTATCCAAGA+AGG | 0.538671 | tig0016097:+6280 | Msa1357550:CDS |
| TTAAGTTTAAGTGAGATATG+AGG | 0.539640 | tig0016097:-9490 | None:intergenic |
| TGAACTTTCTGCTAATATCA+GGG | 0.539929 | tig0016097:+9282 | Msa1357550:CDS |
| TCAGCTTCAAGTGGTATTGG+TGG | 0.540011 | tig0016097:+6358 | Msa1357550:CDS |
| GCTTCAAGTGGTATTGGTGG+CGG | 0.540106 | tig0016097:+6361 | Msa1357550:CDS |
| TTAATGAAAGCGATCAAACT+CGG | 0.540330 | tig0016097:-9572 | None:intergenic |
| CATATTATAAAGAATTAAGA+TGG | 0.547738 | tig0016097:-6098 | None:intergenic |
| GGTATGCCTCCTCCTTCAGG+TGG | 0.549489 | tig0016097:+7485 | Msa1357550:CDS |
| AGGTGGGCCTCAAATGATGC+TGG | 0.553365 | tig0016097:+7502 | Msa1357550:CDS |
| GGCATTACAAGTCTATTCCA+TGG | 0.553522 | tig0016097:-7116 | None:intergenic |
| GATTATTGCTGCAACTTCAG+AGG | 0.553592 | tig0016097:+8564 | Msa1357550:CDS |
| AGAATTGAAATAATTAAATG+TGG | 0.555500 | tig0016097:+9652 | Msa1357550:three_prime_UTR |
| TGCTCCTCTTCATGCTTCCA+AGG | 0.556551 | tig0016097:+6444 | Msa1357550:CDS |
| TGAGGCCCACCTGAAGGAGG+AGG | 0.557428 | tig0016097:-7491 | None:intergenic |
| GAAGGCAAATGGTGGCCTCT+CGG | 0.562410 | tig0016097:+7034 | Msa1357550:CDS |
| GGCTGGAGGGATATTGACAT+TGG | 0.564181 | tig0016097:+7391 | Msa1357550:CDS |
| ATCATTTGAGGCCCACCTGA+AGG | 0.564377 | tig0016097:-7497 | None:intergenic |
| AGGGAAAGCCTTAGAAGTAA+GGG | 0.565321 | tig0016097:+9301 | Msa1357550:CDS |
| GCCGTAAGTGATCCAAGAAA+GGG | 0.566039 | tig0016097:+9424 | Msa1357550:CDS |
| ACAATACTTTCACCAAGTAC+AGG | 0.566632 | tig0016097:+8260 | Msa1357550:CDS |
| CAGCAAGGCTCTGAAGGACA+TGG | 0.566832 | tig0016097:-9324 | None:intergenic |
| GCAGTTCCAGGAGAACTAGC+TGG | 0.567970 | tig0016097:+7059 | Msa1357550:CDS |
| GTTGTTCCCATGCCTTGTGA+AGG | 0.569302 | tig0016097:-7082 | None:intergenic |
| GGTCCACAAGCTTTGTATGG+TGG | 0.569960 | tig0016097:+7332 | Msa1357550:CDS |
| AGAACCTTGAGAACAATAGT+TGG | 0.571389 | tig0016097:-8407 | None:intergenic |
| TGGAATCAGATAAATGATCA+TGG | 0.571447 | tig0016097:+8158 | Msa1357550:CDS |
| AATAGTACTCAACAATGAGA+TGG | 0.573475 | tig0016097:+8283 | Msa1357550:CDS |
| AAAGCAGTAGTAGGTGCAAG+TGG | 0.574642 | tig0016097:+8532 | Msa1357550:CDS |
| GGATCCCAAGGGAACCAGAA+AGG | 0.575413 | tig0016097:-7857 | None:intergenic |
| GGATGGATGTTATCCAAGAA+GGG | 0.577595 | tig0016097:+6281 | Msa1357550:CDS |
| TCAGTGATTCTTGCTAGTAG+AGG | 0.579772 | tig0016097:+7140 | Msa1357550:CDS |
| GTATGCCTCCTCCTTCAGGT+GGG | 0.584516 | tig0016097:+7486 | Msa1357550:CDS |
| ACCATACCTTCACATGCAGA+TGG | 0.585318 | tig0016097:+7175 | Msa1357550:CDS |
| CATGGAAAACTCTTGAAAGC+AGG | 0.586551 | tig0016097:+7254 | Msa1357550:CDS |
| TCTTGAAATACAGCTACTAG+TGG | 0.586782 | tig0016097:-9632 | None:intergenic |
| AGAACTGGACAACAGTGACC+GGG | 0.586985 | tig0016097:+9251 | Msa1357550:CDS |
| AGAAAGTTCAAAGTGGTCCC+CGG | 0.588081 | tig0016097:-9269 | None:intergenic |
| AGCAGTTTCTCTCATATCAA+AGG | 0.589334 | tig0016097:-6425 | None:intergenic |
| TACAGCTACTAGTGGGACCA+AGG | 0.592143 | tig0016097:-9624 | None:intergenic |
| TAATGAAAGCGATCAAACTC+GGG | 0.593238 | tig0016097:-9571 | None:intergenic |
| AGCTGGCCTTCACAAGGCAT+GGG | 0.593280 | tig0016097:+7076 | Msa1357550:CDS |
| ACGAAATTGGCAGGAGCAGG+CGG | 0.593667 | tig0016097:-8350 | None:intergenic |
| TCAAATATATCGAATGACAT+TGG | 0.595472 | tig0016097:+7209 | Msa1357550:CDS |
| ATTCCACCATACAAAGCTTG+TGG | 0.596836 | tig0016097:-7335 | None:intergenic |
| GACATATTGTCCCACCAGCA+AGG | 0.600088 | tig0016097:-9339 | None:intergenic |
| CTGCCAATTTCGTCGTGCCG+GGG | 0.602376 | tig0016097:+8360 | Msa1357550:CDS |
| TTCAGTTAGAATGAATCTTG+GGG | 0.603643 | tig0016097:+7911 | Msa1357550:CDS |
| AACAAAGAGGAGGCATGCGA+TGG | 0.603767 | tig0016097:-6146 | None:intergenic |
| AAAGATGTTCAGAAGGCTGG+AGG | 0.604111 | tig0016097:+7377 | Msa1357550:CDS |
| GTTAGCTAATGGTGTAGCAA+AGG | 0.604530 | tig0016097:+6402 | Msa1357550:CDS |
| TCCAAAATAAATAAAGGTGT+AGG | 0.605868 | tig0016097:+9391 | Msa1357550:CDS |
| AGTAGTGTATTTGCACCACA+TGG | 0.606382 | tig0016097:+7236 | Msa1357550:CDS |
| AGGGAACCAGAAAGGCCTGA+AGG | 0.606461 | tig0016097:-7849 | None:intergenic |
| CATACCTGATGATAGACCCT+AGG | 0.617223 | tig0016097:-8640 | None:intergenic |
| GAAATACGAATTTACTGTAG+TGG | 0.620251 | tig0016097:-8231 | None:intergenic |
| TATGATTCAAGTCATTATGG+TGG | 0.621095 | tig0016097:+8029 | Msa1357550:CDS |
| ATTTGAGGCCCACCTGAAGG+AGG | 0.625374 | tig0016097:-7494 | None:intergenic |
| AGAACTAGCTGGCCTTCACA+AGG | 0.628697 | tig0016097:+7070 | Msa1357550:CDS |
| CTACTAGCAAGAATCACTGA+TGG | 0.635765 | tig0016097:-7137 | None:intergenic |
| TAAAGGTGTAGGAAAGCTTG+TGG | 0.635981 | tig0016097:+9402 | Msa1357550:CDS |
| CACAAGGCATGGGAACAACA+TGG | 0.636359 | tig0016097:+7086 | Msa1357550:CDS |
| GTTGTCAGTTCAGCTTCAAG+TGG | 0.641203 | tig0016097:+6349 | Msa1357550:CDS |
| ACAGCTACTAGTGGGACCAA+GGG | 0.652254 | tig0016097:-9623 | None:intergenic |
| CTGAAGGAGGAGGCATACCA+AGG | 0.655629 | tig0016097:-7481 | None:intergenic |
| CTTGAAATACAGCTACTAGT+GGG | 0.656621 | tig0016097:-9631 | None:intergenic |
| AGTACCTTGGAAGCATGAAG+AGG | 0.656955 | tig0016097:-6448 | None:intergenic |
| AAGATGTTCAGAAGGCTGGA+GGG | 0.658153 | tig0016097:+7378 | Msa1357550:CDS |
| ATGCCAAACTGGAAACAAAG+AGG | 0.660398 | tig0016097:-6159 | None:intergenic |
| TGGGATCCATAGAGAAATCG+AGG | 0.663794 | tig0016097:+7872 | Msa1357550:CDS |
| GCAGTAGTAGGTGCAAGTGG+AGG | 0.669154 | tig0016097:+8535 | Msa1357550:CDS |
| TCGATGCTCGAAGATTGGGA+TGG | 0.670453 | tig0016097:+6264 | Msa1357550:CDS |
| ACTACTTTGAAGGCAAATGG+TGG | 0.671606 | tig0016097:+7026 | Msa1357550:CDS |
| GATGGATGTTATCCAAGAAG+GGG | 0.675440 | tig0016097:+6282 | Msa1357550:CDS |
| CCAAACTGGAAACAAAGAGG+AGG | 0.676783 | tig0016097:-6156 | None:intergenic |
| TATGCAGCTGATACCTAATG+TGG | 0.679757 | tig0016097:+9219 | Msa1357550:intron |
| TGAGATATGAGGTGACAATG+TGG | 0.681915 | tig0016097:-9479 | None:intergenic |
| GAGAACAATAGTTGGTGACA+TGG | 0.682147 | tig0016097:-8399 | None:intergenic |
| TATTAGCAGAAAGTTCAAAG+TGG | 0.683177 | tig0016097:-9276 | None:intergenic |
| GTAAGTGATCCAAGAAAGGG+TGG | 0.686908 | tig0016097:+9427 | Msa1357550:CDS |
| CTCCTGGAACTGCTACCGAG+AGG | 0.707943 | tig0016097:-7049 | None:intergenic |
| ATGGATGTTATCCAAGAAGG+GGG | 0.708511 | tig0016097:+6283 | Msa1357550:CDS |
| GATTTCTCTATGGATCCCAA+GGG | 0.710706 | tig0016097:-7868 | None:intergenic |
| GAACTGGACAACAGTGACCG+GGG | 0.715377 | tig0016097:+9252 | Msa1357550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTGTATATAAATAATTT+AGG | - | tig0016097:8963-8982 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAAAATGATCAA+TGG | - | tig0016097:9100-9119 | None:intergenic | 10.0% |
| !! | CATATTATAAAGAATTAAGA+TGG | - | tig0016097:6101-6120 | None:intergenic | 15.0% |
| !! | CATCTTAATTCTTTATAATA+TGG | + | tig0016097:6099-6118 | Msa1357550:exon | 15.0% |
| !! | ATATGTTATAATAAGAAACT+AGG | + | tig0016097:7281-7300 | Msa1357550:CDS | 15.0% |
| !! | TTCCTATTTATAAAAATAGA+TGG | + | tig0016097:7578-7597 | Msa1357550:intron | 15.0% |
| !! | TCCTATTTATAAAAATAGAT+GGG | + | tig0016097:7579-7598 | Msa1357550:intron | 15.0% |
| !!! | TAACTCAATATTTTAAAAAC+TGG | - | tig0016097:7717-7736 | None:intergenic | 15.0% |
| !! | TTAACTTAGTAAAGTATAAT+TGG | + | tig0016097:8987-9006 | Msa1357550:intron | 15.0% |
| !! | TAAAAATATGAAGATAAATG+TGG | + | tig0016097:9112-9131 | Msa1357550:intron | 15.0% |
| !! | AGAATTGAAATAATTAAATG+TGG | + | tig0016097:9652-9671 | Msa1357550:three_prime_UTR | 15.0% |
| !!! | TGAATTGTATATTTTCATTG+AGG | - | tig0016097:6075-6094 | None:intergenic | 20.0% |
| !! | CCACTATTTAATTAAAATCT+TGG | - | tig0016097:6514-6533 | None:intergenic | 20.0% |
| !!! | CCAAGATTTTAATTAAATAG+TGG | + | tig0016097:6511-6530 | Msa1357550:intron | 20.0% |
| !!! | AGATTTTAATTAAATAGTGG+CGG | + | tig0016097:6514-6533 | Msa1357550:intron | 20.0% |
| !! | CCTATTTATAAAAATAGATG+GGG | + | tig0016097:7580-7599 | Msa1357550:intron | 20.0% |
| !! | CTATTTATAAAAATAGATGG+GGG | + | tig0016097:7581-7600 | Msa1357550:intron | 20.0% |
| !! | TCAGTTATATTTACAAAATC+AGG | - | tig0016097:7939-7958 | None:intergenic | 20.0% |
| !! | ACATGAAAAATAGTTATAAG+TGG | + | tig0016097:8855-8874 | Msa1357550:intron | 20.0% |
| !! | CATGAAAAATAGTTATAAGT+GGG | + | tig0016097:8856-8875 | Msa1357550:intron | 20.0% |
| !! | GAACATTCCAAAATAAATAA+AGG | + | tig0016097:9385-9404 | Msa1357550:CDS | 20.0% |
| !! | AAGAAAAATTTAATGTACTG+TGG | - | tig0016097:9737-9756 | None:intergenic | 20.0% |
| !! | TTCTAGAAATTTATTCTCTG+TGG | - | tig0016097:6803-6822 | None:intergenic | 25.0% |
| !! | AATGAGAAGAGAAAATTTTG+AGG | - | tig0016097:6903-6922 | None:intergenic | 25.0% |
| ! | GAAAAAATGGATGTATCATA+TGG | - | tig0016097:6985-7004 | None:intergenic | 25.0% |
| ! | TCAAATATATCGAATGACAT+TGG | + | tig0016097:7209-7228 | Msa1357550:CDS | 25.0% |
| ! | TTTAGTTAAAGATGTTCAGA+AGG | + | tig0016097:7370-7389 | Msa1357550:CDS | 25.0% |
| ! | AAAGTACACTGTTAAACAAA+AGG | + | tig0016097:7424-7443 | Msa1357550:CDS | 25.0% |
| ! | CCAAGAAAATCTATAGATAT+AGG | - | tig0016097:7452-7471 | None:intergenic | 25.0% |
| !! | CCTATATCTATAGATTTTCT+TGG | + | tig0016097:7449-7468 | Msa1357550:CDS | 25.0% |
| ! | TCCTTATATAGAAAAGAACA+CGG | - | tig0016097:7540-7559 | None:intergenic | 25.0% |
| !!! | CCCCATCTATTTTTATAAAT+AGG | - | tig0016097:7583-7602 | None:intergenic | 25.0% |
| ! | TTTCTCTCTGTCAATAAAAA+AGG | + | tig0016097:7767-7786 | Msa1357550:intron | 25.0% |
| ! | TTCTCTCTGTCAATAAAAAA+GGG | + | tig0016097:7768-7787 | Msa1357550:intron | 25.0% |
| !! | TTTTCAGTTAGAATGAATCT+TGG | + | tig0016097:7909-7928 | Msa1357550:CDS | 25.0% |
| ! | TTTCAGTTAGAATGAATCTT+GGG | + | tig0016097:7910-7929 | Msa1357550:CDS | 25.0% |
| ! | ACTTATGATTCAAGTCATTA+TGG | + | tig0016097:8026-8045 | Msa1357550:CDS | 25.0% |
| ! | ACTGCAATTAATTAAATTGC+TGG | - | tig0016097:8111-8130 | None:intergenic | 25.0% |
| ! | ACTACAGTAAATTCGTATTT+CGG | + | tig0016097:8233-8252 | Msa1357550:CDS | 25.0% |
| ! | TCAAAAATTATTCTGCAATG+TGG | - | tig0016097:8434-8453 | None:intergenic | 25.0% |
| !! | TGTAATATTTGTGTTACTAC+AGG | + | tig0016097:8498-8517 | Msa1357550:intron | 25.0% |
| !!! | CATGTTTTTTGCTTATATTC+TGG | + | tig0016097:8686-8705 | Msa1357550:intron | 25.0% |
| ! | CAATAACATCATTAAAACCT+AGG | + | tig0016097:8777-8796 | Msa1357550:intron | 25.0% |
| !!! | ATAACATTTTGAGTTTTCCT+AGG | - | tig0016097:8797-8816 | None:intergenic | 25.0% |
| ! | TTCTCATAATATACCACATT+AGG | - | tig0016097:9235-9254 | None:intergenic | 25.0% |
| !! | TCCAAAATAAATAAAGGTGT+AGG | + | tig0016097:9391-9410 | Msa1357550:CDS | 25.0% |
| !!! | TCCTACACCTTTATTTATTT+TGG | - | tig0016097:9395-9414 | None:intergenic | 25.0% |
| ! | TTAAGTTTAAGTGAGATATG+AGG | - | tig0016097:9493-9512 | None:intergenic | 25.0% |
| ! | ATATCTCACTTAAACTTAAG+TGG | + | tig0016097:9494-9513 | Msa1357550:three_prime_UTR | 25.0% |
| GTACAAGACCAATTATATAC+AGG | - | tig0016097:6053-6072 | None:intergenic | 30.0% | |
| !! | TGTTTTTGTGTGTCCATTTT+TGG | - | tig0016097:6194-6213 | None:intergenic | 30.0% |
| ATCTTGGAAACTATATGCAA+AGG | - | tig0016097:6498-6517 | None:intergenic | 30.0% | |
| !! | TTTTAATTAAATAGTGGCGG+TGG | + | tig0016097:6517-6536 | Msa1357550:intron | 30.0% |
| ATTTGTTTGGAAAAACCATG+TGG | + | tig0016097:6651-6670 | Msa1357550:intron | 30.0% | |
| AGTAAGAAAAGTCTAGTAGA+TGG | + | tig0016097:6710-6729 | Msa1357550:intron | 30.0% | |
| TGGATGATATAATTGACACA+TGG | + | tig0016097:6730-6749 | Msa1357550:intron | 30.0% | |
| GATATAATTGACACATGGTT+AGG | + | tig0016097:6735-6754 | Msa1357550:intron | 30.0% | |
| !!! | ATGATACATCCATTTTTTCC+AGG | + | tig0016097:6986-7005 | Msa1357550:intron | 30.0% |
| CATACATATCCTGGAAAAAA+TGG | - | tig0016097:6998-7017 | None:intergenic | 30.0% | |
| !!! | CATTTTTTCCAGGATATGTA+TGG | + | tig0016097:6996-7015 | Msa1357550:intron | 30.0% |
| !! | GTTTAACAGTGTACTTTTTG+AGG | - | tig0016097:7421-7440 | None:intergenic | 30.0% |
| TTTCTTGGATTAAAGATCCT+TGG | + | tig0016097:7464-7483 | Msa1357550:CDS | 30.0% | |
| ! | ACCGTGTTCTTTTCTATATA+AGG | + | tig0016097:7536-7555 | Msa1357550:intron | 30.0% |
| TTCAGTTAGAATGAATCTTG+GGG | + | tig0016097:7911-7930 | Msa1357550:CDS | 30.0% | |
| TATGATTCAAGTCATTATGG+TGG | + | tig0016097:8029-8048 | Msa1357550:CDS | 30.0% | |
| TTCATTCATTCCCTCTTTAT+AGG | + | tig0016097:8135-8154 | Msa1357550:intron | 30.0% | |
| TGGAATCAGATAAATGATCA+TGG | + | tig0016097:8158-8177 | Msa1357550:CDS | 30.0% | |
| GAAATACGAATTTACTGTAG+TGG | - | tig0016097:8234-8253 | None:intergenic | 30.0% | |
| AATAGTACTCAACAATGAGA+TGG | + | tig0016097:8283-8302 | Msa1357550:CDS | 30.0% | |
| !!! | TCCTTGGAAACATTTTTTAC+AGG | - | tig0016097:8323-8342 | None:intergenic | 30.0% |
| ! | CTTTTGAATCACTTTGTCAA+AGG | + | tig0016097:8589-8608 | Msa1357550:CDS | 30.0% |
| ATGGAATCTTACATTTGTTC+TGG | + | tig0016097:8660-8679 | Msa1357550:intron | 30.0% | |
| ATTCAGAGCTATGTGAAATA+TGG | + | tig0016097:8718-8737 | Msa1357550:intron | 30.0% | |
| !! | TTATGTGATTGATTGGTTTG+AGG | - | tig0016097:9167-9186 | None:intergenic | 30.0% |
| TCATCAGTTATGTGATTGAT+TGG | - | tig0016097:9174-9193 | None:intergenic | 30.0% | |
| TGAGAAATTAACTCACCATA+TGG | + | tig0016097:9191-9210 | Msa1357550:intron | 30.0% | |
| ATGTGGTATATTATGAGAAC+TGG | + | tig0016097:9236-9255 | Msa1357550:CDS | 30.0% | |
| TATTAGCAGAAAGTTCAAAG+TGG | - | tig0016097:9279-9298 | None:intergenic | 30.0% | |
| TTGAACTTTCTGCTAATATC+AGG | + | tig0016097:9281-9300 | Msa1357550:CDS | 30.0% | |
| TGAACTTTCTGCTAATATCA+GGG | + | tig0016097:9282-9301 | Msa1357550:CDS | 30.0% | |
| TTAATGAAAGCGATCAAACT+CGG | - | tig0016097:9575-9594 | None:intergenic | 30.0% | |
| TTTGATCGCTTTCATTAACT+AGG | + | tig0016097:9577-9596 | Msa1357550:three_prime_UTR | 30.0% | |
| TAAAAAATATGCTACTCCCT+TGG | + | tig0016097:9607-9626 | Msa1357550:three_prime_UTR | 30.0% | |
| TGGCTGCAGTTATGTTATTA+TGG | + | tig0016097:6119-6138 | Msa1357550:CDS | 35.0% | |
| GAAGTAATCATTGCTCATCA+TGG | + | tig0016097:6220-6239 | Msa1357550:CDS | 35.0% | |
| ! | AGCTAACCTAAGAAGCATAA+AGG | - | tig0016097:6389-6408 | None:intergenic | 35.0% |
| ! | ATGCTTCTTAGGTTAGCTAA+TGG | + | tig0016097:6391-6410 | Msa1357550:CDS | 35.0% |
| AGCAGTTTCTCTCATATCAA+AGG | - | tig0016097:6428-6447 | None:intergenic | 35.0% | |
| !! | TCCAAGGTACTTTTCAATCA+TGG | + | tig0016097:6460-6479 | Msa1357550:intron | 35.0% |
| !! | TCCATGATTGAAAAGTACCT+TGG | - | tig0016097:6464-6483 | None:intergenic | 35.0% |
| !!! | AGTGTTTTGATATGTCAACG+CGG | - | tig0016097:6597-6616 | None:intergenic | 35.0% |
| TTTCATTTCTCTACACCACA+TGG | - | tig0016097:6669-6688 | None:intergenic | 35.0% | |
| TGTGGTGTAGAGAAATGAAA+AGG | + | tig0016097:6669-6688 | Msa1357550:intron | 35.0% | |
| AATGAAAAGGACACATGTAG+AGG | + | tig0016097:6682-6701 | Msa1357550:intron | 35.0% | |
| ! | TTTTTCCAGGATATGTATGG+TGG | + | tig0016097:6999-7018 | Msa1357550:intron | 35.0% |
| ! | AACACTACTTTGAAGGCAAA+TGG | + | tig0016097:7023-7042 | Msa1357550:CDS | 35.0% |
| !!! | TTTTTTCCATCTGCATGTGA+AGG | - | tig0016097:7184-7203 | None:intergenic | 35.0% |
| CTAAGAGCAATTGCAAAGTT+TGG | + | tig0016097:7311-7330 | Msa1357550:CDS | 35.0% | |
| TAACTTACCAGCATCATTTG+AGG | - | tig0016097:7512-7531 | None:intergenic | 35.0% | |
| AACCCAACTGCTATGTAAAT+GGG | + | tig0016097:7631-7650 | Msa1357550:intron | 35.0% | |
| ATCCCATTTACATAGCAGTT+GGG | - | tig0016097:7636-7655 | None:intergenic | 35.0% | |
| !! | TAAAAACTGGTTTGAACTGC+CGG | - | tig0016097:7704-7723 | None:intergenic | 35.0% |
| TTTCAACACTTGAGCAAACT+TGG | - | tig0016097:7985-8004 | None:intergenic | 35.0% | |
| ATTCATTCCCTCTTTATAGG+TGG | + | tig0016097:8138-8157 | Msa1357550:intron | 35.0% | |
| TCTGATTCCACCTATAAAGA+GGG | - | tig0016097:8148-8167 | None:intergenic | 35.0% | |
| ATCTGATTCCACCTATAAAG+AGG | - | tig0016097:8149-8168 | None:intergenic | 35.0% | |
| ACAATACTTTCACCAAGTAC+AGG | + | tig0016097:8260-8279 | Msa1357550:CDS | 35.0% | |
| TTGAGTACTATTCCTGTACT+TGG | - | tig0016097:8275-8294 | None:intergenic | 35.0% | |
| !!! | GGAAACATTTTTTACAGGCA+TGG | - | tig0016097:8318-8337 | None:intergenic | 35.0% |
| GCCTGTAAAAAATGTTTCCA+AGG | + | tig0016097:8319-8338 | Msa1357550:CDS | 35.0% | |
| AGAACCTTGAGAACAATAGT+TGG | - | tig0016097:8410-8429 | None:intergenic | 35.0% | |
| ! | TATTTGTGTTACTACAGGAC+AGG | + | tig0016097:8503-8522 | Msa1357550:intron | 35.0% |
| ! | ATTTGTGTTACTACAGGACA+GGG | + | tig0016097:8504-8523 | Msa1357550:intron | 35.0% |
| GAATCACTTTGTCAAAGGAA+TGG | + | tig0016097:8594-8613 | Msa1357550:CDS | 35.0% | |
| ATCTACTTGTAGTCTCATCT+TGG | + | tig0016097:8815-8834 | Msa1357550:intron | 35.0% | |
| TCTATACGTAGGACTAAGTT+AGG | - | tig0016097:8921-8940 | None:intergenic | 35.0% | |
| GATGACATAACTCTATACGT+AGG | - | tig0016097:8932-8951 | None:intergenic | 35.0% | |
| TAATGAAAGCGATCAAACTC+GGG | - | tig0016097:9574-9593 | None:intergenic | 35.0% | |
| CTTGAAATACAGCTACTAGT+GGG | - | tig0016097:9634-9653 | None:intergenic | 35.0% | |
| TCTTGAAATACAGCTACTAG+TGG | - | tig0016097:9635-9654 | None:intergenic | 35.0% | |
| ! | ATGTGGCTTGATGTGTATTT+TGG | + | tig0016097:9669-9688 | Msa1357550:three_prime_UTR | 35.0% |
| AAAAACTCAAGTGCCATATG+TGG | + | tig0016097:9709-9728 | Msa1357550:three_prime_UTR | 35.0% | |
| ATGCCAAACTGGAAACAAAG+AGG | - | tig0016097:6162-6181 | None:intergenic | 40.0% | |
| GGATGGATGTTATCCAAGAA+GGG | + | tig0016097:6281-6300 | Msa1357550:CDS | 40.0% | |
| GATGGATGTTATCCAAGAAG+GGG | + | tig0016097:6282-6301 | Msa1357550:CDS | 40.0% | |
| ATGGATGTTATCCAAGAAGG+GGG | + | tig0016097:6283-6302 | Msa1357550:CDS | 40.0% | |
| AGTTCAGCTTCAAGTGGTAT+TGG | + | tig0016097:6355-6374 | Msa1357550:CDS | 40.0% | |
| GTTAGCTAATGGTGTAGCAA+AGG | + | tig0016097:6402-6421 | Msa1357550:CDS | 40.0% | |
| ! | ACTACTTTGAAGGCAAATGG+TGG | + | tig0016097:7026-7045 | Msa1357550:CDS | 40.0% |
| AACAACATGGAAAGCTTCCA+TGG | + | tig0016097:7099-7118 | Msa1357550:CDS | 40.0% | |
| GGCATTACAAGTCTATTCCA+TGG | - | tig0016097:7119-7138 | None:intergenic | 40.0% | |
| CTACTAGCAAGAATCACTGA+TGG | - | tig0016097:7140-7159 | None:intergenic | 40.0% | |
| TCAGTGATTCTTGCTAGTAG+AGG | + | tig0016097:7140-7159 | Msa1357550:CDS | 40.0% | |
| CAGTGATTCTTGCTAGTAGA+GGG | + | tig0016097:7141-7160 | Msa1357550:CDS | 40.0% | |
| AGTAGTGTATTTGCACCACA+TGG | + | tig0016097:7236-7255 | Msa1357550:CDS | 40.0% | |
| ! | GCTTTCAAGAGTTTTCCATG+TGG | - | tig0016097:7254-7273 | None:intergenic | 40.0% |
| CATGGAAAACTCTTGAAAGC+AGG | + | tig0016097:7254-7273 | Msa1357550:CDS | 40.0% | |
| ! | TTTGGTCCACAAGCTTTGTA+TGG | + | tig0016097:7329-7348 | Msa1357550:CDS | 40.0% |
| ATTCCACCATACAAAGCTTG+TGG | - | tig0016097:7338-7357 | None:intergenic | 40.0% | |
| ! | GCTTTGTATGGTGGAATAGT+TGG | + | tig0016097:7341-7360 | Msa1357550:CDS | 40.0% |
| GTTAAAGATGTTCAGAAGGC+TGG | + | tig0016097:7374-7393 | Msa1357550:CDS | 40.0% | |
| TTGAACAACGATTGTACCAC+GGG | - | tig0016097:7613-7632 | None:intergenic | 40.0% | |
| GTTGAACAACGATTGTACCA+CGG | - | tig0016097:7614-7633 | None:intergenic | 40.0% | |
| CAACCCAACTGCTATGTAAA+TGG | + | tig0016097:7630-7649 | Msa1357550:intron | 40.0% | |
| GATCCCATTTACATAGCAGT+TGG | - | tig0016097:7637-7656 | None:intergenic | 40.0% | |
| GTAAATGGGATCAAACCAAC+CGG | + | tig0016097:7645-7664 | Msa1357550:intron | 40.0% | |
| CTGTAACAGAAAGATGAGAG+TGG | - | tig0016097:7799-7818 | None:intergenic | 40.0% | |
| GATTTCTCTATGGATCCCAA+GGG | - | tig0016097:7871-7890 | None:intergenic | 40.0% | |
| TCAAAGCCTCGATTTCTCTA+TGG | - | tig0016097:7881-7900 | None:intergenic | 40.0% | |
| CGAATTTACTGTAGTGGTCA+TGG | - | tig0016097:8228-8247 | None:intergenic | 40.0% | |
| !! | GTTGGTGACATGGATGATAA+TGG | - | tig0016097:8392-8411 | None:intergenic | 40.0% |
| !! | GAGAACAATAGTTGGTGACA+TGG | - | tig0016097:8402-8421 | None:intergenic | 40.0% |
| GTCACCAACTATTGTTCTCA+AGG | + | tig0016097:8403-8422 | Msa1357550:CDS | 40.0% | |
| GATTATTGCTGCAACTTCAG+AGG | + | tig0016097:8564-8583 | Msa1357550:CDS | 40.0% | |
| GGAGCAGTTACAGAAGAAAA+AGG | - | tig0016097:8622-8641 | None:intergenic | 40.0% | |
| TTTCTTCTGTAACTGCTCCT+AGG | + | tig0016097:8623-8642 | Msa1357550:CDS | 40.0% | |
| TTCTTCTGTAACTGCTCCTA+GGG | + | tig0016097:8624-8643 | Msa1357550:CDS | 40.0% | |
| CAGCTGCATAATCAACCATA+TGG | - | tig0016097:9209-9228 | None:intergenic | 40.0% | |
| TATGCAGCTGATACCTAATG+TGG | + | tig0016097:9219-9238 | Msa1357550:intron | 40.0% | |
| AGGGAAAGCCTTAGAAGTAA+GGG | + | tig0016097:9301-9320 | Msa1357550:CDS | 40.0% | |
| ! | TAAAGGTGTAGGAAAGCTTG+TGG | + | tig0016097:9402-9421 | Msa1357550:CDS | 40.0% |
| ACCCTTTCTTGGATCACTTA+CGG | - | tig0016097:9428-9447 | None:intergenic | 40.0% | |
| ! | GAATTTTCTCAAATGCCTGC+AGG | - | tig0016097:9457-9476 | None:intergenic | 40.0% |
| TGAGATATGAGGTGACAATG+TGG | - | tig0016097:9482-9501 | None:intergenic | 40.0% | |
| TGGTCAATGAGCTTCAGTTA+AGG | + | tig0016097:9514-9533 | Msa1357550:three_prime_UTR | 40.0% | |
| CAGTTAAGGTCGAATAGATC+AGG | + | tig0016097:9528-9547 | Msa1357550:three_prime_UTR | 40.0% | |
| ATCAGGAGTCCTAATTGATC+TGG | + | tig0016097:9545-9564 | Msa1357550:three_prime_UTR | 40.0% | |
| CCAAACTGGAAACAAAGAGG+AGG | - | tig0016097:6159-6178 | None:intergenic | 45.0% | |
| ! | CCTCCTCTTTGTTTCCAGTT+TGG | + | tig0016097:6156-6175 | Msa1357550:CDS | 45.0% |
| GCATCTGCTTCTGCCAAAAA+TGG | + | tig0016097:6178-6197 | Msa1357550:CDS | 45.0% | |
| ATCGTCGATGCTCGAAGATT+GGG | + | tig0016097:6260-6279 | Msa1357550:CDS | 45.0% | |
| GGGATGGATGTTATCCAAGA+AGG | + | tig0016097:6280-6299 | Msa1357550:CDS | 45.0% | |
| GTTGTCAGTTCAGCTTCAAG+TGG | + | tig0016097:6349-6368 | Msa1357550:CDS | 45.0% | |
| ! | TCAGCTTCAAGTGGTATTGG+TGG | + | tig0016097:6358-6377 | Msa1357550:CDS | 45.0% |
| ! | AGTACCTTGGAAGCATGAAG+AGG | - | tig0016097:6451-6470 | None:intergenic | 45.0% |
| CGCACTTGCAGACATTTGTT+TGG | + | tig0016097:6638-6657 | Msa1357550:intron | 45.0% | |
| TGTTGCCACCATACATATCC+TGG | - | tig0016097:7007-7026 | None:intergenic | 45.0% | |
| TGGTGGCAACACTACTTTGA+AGG | + | tig0016097:7016-7035 | Msa1357550:CDS | 45.0% | |
| ACCATACCTTCACATGCAGA+TGG | + | tig0016097:7175-7194 | Msa1357550:CDS | 45.0% | |
| TCCATCTGCATGTGAAGGTA+TGG | - | tig0016097:7179-7198 | None:intergenic | 45.0% | |
| AAAGATGTTCAGAAGGCTGG+AGG | + | tig0016097:7377-7396 | Msa1357550:CDS | 45.0% | |
| AAGATGTTCAGAAGGCTGGA+GGG | + | tig0016097:7378-7397 | Msa1357550:CDS | 45.0% | |
| AGGTTGAACCAGAAACCAGA+CGG | - | tig0016097:7675-7694 | None:intergenic | 45.0% | |
| ! | TCTGGTTCAACCTGTTGATC+CGG | + | tig0016097:7682-7701 | Msa1357550:intron | 45.0% |
| GCACAATATGAGCTTCCTTC+AGG | + | tig0016097:7834-7853 | Msa1357550:CDS | 45.0% | |
| CGATTTCTCTATGGATCCCA+AGG | - | tig0016097:7872-7891 | None:intergenic | 45.0% | |
| TGGGATCCATAGAGAAATCG+AGG | + | tig0016097:7872-7891 | Msa1357550:CDS | 45.0% | |
| !! | GATGATAATGGTCTCTTCCC+CGG | - | tig0016097:8380-8399 | None:intergenic | 45.0% |
| AGGGAAGTGAAAGCAGTAGT+AGG | + | tig0016097:8523-8542 | Msa1357550:CDS | 45.0% | |
| AAAGCAGTAGTAGGTGCAAG+TGG | + | tig0016097:8532-8551 | Msa1357550:CDS | 45.0% | |
| CATACCTGATGATAGACCCT+AGG | - | tig0016097:8643-8662 | None:intergenic | 45.0% | |
| CTAGGGTCTATCATCAGGTA+TGG | + | tig0016097:8641-8660 | Msa1357550:intron | 45.0% | |
| GGATGTACAGCAAGATCACA+AGG | + | tig0016097:9133-9152 | Msa1357550:intron | 45.0% | |
| AGAAAGTTCAAAGTGGTCCC+CGG | - | tig0016097:9272-9291 | None:intergenic | 45.0% | |
| CAGGGAAAGCCTTAGAAGTA+AGG | + | tig0016097:9300-9319 | Msa1357550:CDS | 45.0% | |
| GCCGTAAGTGATCCAAGAAA+GGG | + | tig0016097:9424-9443 | Msa1357550:CDS | 45.0% | |
| GTAAGTGATCCAAGAAAGGG+TGG | + | tig0016097:9427-9446 | Msa1357550:CDS | 45.0% | |
| ATGTACTGTGGCTCCACATA+TGG | - | tig0016097:9725-9744 | None:intergenic | 45.0% | |
| ! | AACAAAGAGGAGGCATGCGA+TGG | - | tig0016097:6149-6168 | None:intergenic | 50.0% |
| !! | CTTCGAGCATCGACGATCAT+CGG | - | tig0016097:6257-6276 | None:intergenic | 50.0% |
| GATCGTCGATGCTCGAAGAT+TGG | + | tig0016097:6259-6278 | Msa1357550:CDS | 50.0% | |
| TCGATGCTCGAAGATTGGGA+TGG | + | tig0016097:6264-6283 | Msa1357550:CDS | 50.0% | |
| TGTGGCTGCTGCTCTTTGTT+TGG | + | tig0016097:6324-6343 | Msa1357550:CDS | 50.0% | |
| ! | GTGGCTGCTGCTCTTTGTTT+GGG | + | tig0016097:6325-6344 | Msa1357550:CDS | 50.0% |
| !! | GCTTCAAGTGGTATTGGTGG+CGG | + | tig0016097:6361-6380 | Msa1357550:CDS | 50.0% |
| GCGGTGCCTTTATGCTTCTT+AGG | + | tig0016097:6380-6399 | Msa1357550:CDS | 50.0% | |
| TGCTCCTCTTCATGCTTCCA+AGG | + | tig0016097:6444-6463 | Msa1357550:CDS | 50.0% | |
| TTAAATAGTGGCGGTGGACG+AGG | + | tig0016097:6523-6542 | Msa1357550:intron | 50.0% | |
| ATCTGATGCAGCCTCAATCG+CGG | + | tig0016097:6562-6581 | Msa1357550:intron | 50.0% | |
| ATGTCTGCAAGTGCGCAACT+TGG | - | tig0016097:6633-6652 | None:intergenic | 50.0% | |
| !! | AGAACTAGCTGGCCTTCACA+AGG | + | tig0016097:7070-7089 | Msa1357550:CDS | 50.0% |
| GTTGTTCCCATGCCTTGTGA+AGG | - | tig0016097:7085-7104 | None:intergenic | 50.0% | |
| CACAAGGCATGGGAACAACA+TGG | + | tig0016097:7086-7105 | Msa1357550:CDS | 50.0% | |
| ! | GGTCCACAAGCTTTGTATGG+TGG | + | tig0016097:7332-7351 | Msa1357550:CDS | 50.0% |
| GGCTGGAGGGATATTGACAT+TGG | + | tig0016097:7391-7410 | Msa1357550:CDS | 50.0% | |
| ! | ATCATTTGAGGCCCACCTGA+AGG | - | tig0016097:7500-7519 | None:intergenic | 50.0% |
| AATGGGATCAAACCAACCGG+CGG | + | tig0016097:7648-7667 | Msa1357550:intron | 50.0% | |
| GTTTGAACTGCCGGATCAAC+AGG | - | tig0016097:7695-7714 | None:intergenic | 50.0% | |
| TGCTCCTAGGGTCTATCATC+AGG | + | tig0016097:8636-8655 | Msa1357550:CDS | 50.0% | |
| GAGAACTGGACAACAGTGAC+CGG | + | tig0016097:9250-9269 | Msa1357550:CDS | 50.0% | |
| AGAACTGGACAACAGTGACC+GGG | + | tig0016097:9251-9270 | Msa1357550:CDS | 50.0% | |
| GGACATGGCCCTTACTTCTA+AGG | - | tig0016097:9312-9331 | None:intergenic | 50.0% | |
| GACATATTGTCCCACCAGCA+AGG | - | tig0016097:9342-9361 | None:intergenic | 50.0% | |
| GGCCGTAAGTGATCCAAGAA+AGG | + | tig0016097:9423-9442 | Msa1357550:CDS | 50.0% | |
| GCAGGAAAACCACCCTTTCT+TGG | - | tig0016097:9439-9458 | None:intergenic | 50.0% | |
| ! | AGAAAGGGTGGTTTTCCTGC+AGG | + | tig0016097:9439-9458 | Msa1357550:CDS | 50.0% |
| CTCGGGACTCCAGATCAATT+AGG | - | tig0016097:9557-9576 | None:intergenic | 50.0% | |
| ACAGCTACTAGTGGGACCAA+GGG | - | tig0016097:9626-9645 | None:intergenic | 50.0% | |
| TACAGCTACTAGTGGGACCA+AGG | - | tig0016097:9627-9646 | None:intergenic | 50.0% | |
| GGCAGAAGCAGATGCCAAAC+TGG | - | tig0016097:6173-6192 | None:intergenic | 55.0% | |
| ACATGCAGTGGATGCAGCTG+TGG | + | tig0016097:6306-6325 | Msa1357550:CDS | 55.0% | |
| GAAGGCAAATGGTGGCCTCT+CGG | + | tig0016097:7034-7053 | Msa1357550:CDS | 55.0% | |
| GCAGTTCCAGGAGAACTAGC+TGG | + | tig0016097:7059-7078 | Msa1357550:CDS | 55.0% | |
| ! | TGAAGGCCAGCTAGTTCTCC+TGG | - | tig0016097:7068-7087 | None:intergenic | 55.0% |
| !! | TAGCTGGCCTTCACAAGGCA+TGG | + | tig0016097:7075-7094 | Msa1357550:CDS | 55.0% |
| !! | AGCTGGCCTTCACAAGGCAT+GGG | + | tig0016097:7076-7095 | Msa1357550:CDS | 55.0% |
| ! | CTGAAGGAGGAGGCATACCA+AGG | - | tig0016097:7484-7503 | None:intergenic | 55.0% |
| CTTGGTATGCCTCCTCCTTC+AGG | + | tig0016097:7482-7501 | Msa1357550:CDS | 55.0% | |
| GTATGCCTCCTCCTTCAGGT+GGG | + | tig0016097:7486-7505 | Msa1357550:CDS | 55.0% | |
| ! | ATTTGAGGCCCACCTGAAGG+AGG | - | tig0016097:7497-7516 | None:intergenic | 55.0% |
| AGGTGGGCCTCAAATGATGC+TGG | + | tig0016097:7502-7521 | Msa1357550:CDS | 55.0% | |
| GAGCTTCCTTCAGGCCTTTC+TGG | + | tig0016097:7843-7862 | Msa1357550:CDS | 55.0% | |
| AGGGAACCAGAAAGGCCTGA+AGG | - | tig0016097:7852-7871 | None:intergenic | 55.0% | |
| !! | TCAGGCCTTTCTGGTTCCCT+TGG | + | tig0016097:7852-7871 | Msa1357550:CDS | 55.0% |
| !! | CAGGCCTTTCTGGTTCCCTT+GGG | + | tig0016097:7853-7872 | Msa1357550:CDS | 55.0% |
| GGATCCCAAGGGAACCAGAA+AGG | - | tig0016097:7860-7879 | None:intergenic | 55.0% | |
| ACGAAATTGGCAGGAGCAGG+CGG | - | tig0016097:8353-8372 | None:intergenic | 55.0% | |
| ACGACGAAATTGGCAGGAGC+AGG | - | tig0016097:8356-8375 | None:intergenic | 55.0% | |
| TCCTGCCAATTTCGTCGTGC+CGG | + | tig0016097:8358-8377 | Msa1357550:CDS | 55.0% | |
| GCAGTAGTAGGTGCAAGTGG+AGG | + | tig0016097:8535-8554 | Msa1357550:CDS | 55.0% | |
| GTGGGACAGCTCTCATGACA+TGG | + | tig0016097:8874-8893 | Msa1357550:intron | 55.0% | |
| GAACTGGACAACAGTGACCG+GGG | + | tig0016097:9252-9271 | Msa1357550:CDS | 55.0% | |
| !! | CAGCAAGGCTCTGAAGGACA+TGG | - | tig0016097:9327-9346 | None:intergenic | 55.0% |
| CATGTCCTTCAGAGCCTTGC+TGG | + | tig0016097:9325-9344 | Msa1357550:CDS | 55.0% | |
| TCCTTCAGAGCCTTGCTGGT+GGG | + | tig0016097:9329-9348 | Msa1357550:CDS | 55.0% | |
| CCACTGCATGTCCCCCTTCT+TGG | - | tig0016097:6297-6316 | None:intergenic | 60.0% | |
| CCAAGAAGGGGGACATGCAG+TGG | + | tig0016097:6294-6313 | Msa1357550:CDS | 60.0% | |
| CTCCTGGAACTGCTACCGAG+AGG | - | tig0016097:7052-7071 | None:intergenic | 60.0% | |
| GGTATGCCTCCTCCTTCAGG+TGG | + | tig0016097:7485-7504 | Msa1357550:CDS | 60.0% | |
| !! | TAGATGGGGGCATTGTCCCG+TGG | + | tig0016097:7594-7613 | Msa1357550:intron | 60.0% |
| AGCAGGCGGTCGAACATCCT+TGG | - | tig0016097:8339-8358 | None:intergenic | 60.0% | |
| CCTGCCAATTTCGTCGTGCC+GGG | + | tig0016097:8359-8378 | Msa1357550:CDS | 60.0% | |
| CTGCCAATTTCGTCGTGCCG+GGG | + | tig0016097:8360-8379 | Msa1357550:CDS | 60.0% | |
| CTTCCCCGGCACGACGAAAT+TGG | - | tig0016097:8366-8385 | None:intergenic | 60.0% | |
| GTCCTTCAGAGCCTTGCTGG+TGG | + | tig0016097:9328-9347 | Msa1357550:CDS | 60.0% | |
| ! | TCCCACCAGCAAGGCTCTGA+AGG | - | tig0016097:9333-9352 | None:intergenic | 60.0% |
| GGTCAGCGCAACCGCGATTG+AGG | - | tig0016097:6576-6595 | None:intergenic | 65.0% | |
| GGCCTCTCGGTAGCAGTTCC+AGG | + | tig0016097:7047-7066 | Msa1357550:CDS | 65.0% | |
| TGAGGCCCACCTGAAGGAGG+AGG | - | tig0016097:7494-7513 | None:intergenic | 65.0% | |
| AAACCAACCGGCGGACCGTC+TGG | + | tig0016097:7657-7676 | Msa1357550:intron | 65.0% | |
| AAACCAGACGGTCCGCCGGT+TGG | - | tig0016097:7663-7682 | None:intergenic | 65.0% | |
| CCAGAAACCAGACGGTCCGC+CGG | - | tig0016097:7667-7686 | None:intergenic | 65.0% | |
| CCCGGCACGACGAAATTGGC+AGG | - | tig0016097:8362-8381 | None:intergenic | 65.0% | |
| ! | CCGGCGGACCGTCTGGTTTC+TGG | + | tig0016097:7664-7683 | Msa1357550:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016097 | gene | 6050 | 9796 | 6050 | ID=Msa1357550;Name=Msa1357550 |
| tig0016097 | mRNA | 6050 | 9796 | 6050 | ID=Msa1357550-mRNA-1;Parent=Msa1357550;Name=Msa1357550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=68|1|1|1|1|1|6|328|582 |
| tig0016097 | exon | 6050 | 6465 | 6050 | ID=Msa1357550-mRNA-1:exon:10433;Parent=Msa1357550-mRNA-1 |
| tig0016097 | exon | 7008 | 7523 | 7008 | ID=Msa1357550-mRNA-1:exon:10434;Parent=Msa1357550-mRNA-1 |
| tig0016097 | exon | 7819 | 8054 | 7819 | ID=Msa1357550-mRNA-1:exon:10435;Parent=Msa1357550-mRNA-1 |
| tig0016097 | exon | 8157 | 8424 | 8157 | ID=Msa1357550-mRNA-1:exon:10436;Parent=Msa1357550-mRNA-1 |
| tig0016097 | exon | 8520 | 8657 | 8520 | ID=Msa1357550-mRNA-1:exon:10437;Parent=Msa1357550-mRNA-1 |
| tig0016097 | exon | 9226 | 9796 | 9226 | ID=Msa1357550-mRNA-1:exon:10438;Parent=Msa1357550-mRNA-1 |
| tig0016097 | five_prime_UTR | 6050 | 6117 | 6050 | ID=Msa1357550-mRNA-1:five_prime_utr;Parent=Msa1357550-mRNA-1 |
| tig0016097 | CDS | 6118 | 6465 | 6118 | ID=Msa1357550-mRNA-1:cds;Parent=Msa1357550-mRNA-1 |
| tig0016097 | CDS | 7008 | 7523 | 7008 | ID=Msa1357550-mRNA-1:cds;Parent=Msa1357550-mRNA-1 |
| tig0016097 | CDS | 7819 | 8054 | 7819 | ID=Msa1357550-mRNA-1:cds;Parent=Msa1357550-mRNA-1 |
| tig0016097 | CDS | 8157 | 8424 | 8157 | ID=Msa1357550-mRNA-1:cds;Parent=Msa1357550-mRNA-1 |
| tig0016097 | CDS | 8520 | 8657 | 8520 | ID=Msa1357550-mRNA-1:cds;Parent=Msa1357550-mRNA-1 |
| tig0016097 | CDS | 9226 | 9468 | 9226 | ID=Msa1357550-mRNA-1:cds;Parent=Msa1357550-mRNA-1 |
| tig0016097 | three_prime_UTR | 9469 | 9796 | 9469 | ID=Msa1357550-mRNA-1:three_prime_utr;Parent=Msa1357550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
