Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472050 | XP_039684367.1 | 90.203 | 296 | 16 | 1 | 77 | 359 | 50 | 345 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472050 | A0A396GQG1 | 88.814 | 295 | 20 | 1 | 78 | 359 | 1 | 295 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0230110 | Msa0472050 | 0.941999 | 1.557762e-101 | -8.615850e-47 |
| Msa0472050 | Msa0933080 | 0.856185 | 3.816247e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472050 | MtrunA17_Chr8g0360271 | 88.814 | 295 | 20 | 1 | 78 | 359 | 1 | 295 | 0.0 | 543 |
| Msa0472050 | MtrunA17_Chr3g0110301 | 70.769 | 65 | 6 | 1 | 135 | 186 | 26 | 90 | 2.93e-24 | 95.9 |
| Msa0472050 | MtrunA17_Chr3g0084111 | 36.364 | 165 | 68 | 4 | 196 | 359 | 5 | 133 | 9.75e-22 | 89.7 |
| Msa0472050 | MtrunA17_Chr1g0156481 | 25.085 | 295 | 167 | 11 | 90 | 353 | 18 | 289 | 6.66e-12 | 65.5 |
| Msa0472050 | MtrunA17_Chr5g0405761 | 21.786 | 280 | 192 | 6 | 90 | 356 | 53 | 318 | 8.29e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472050 | AT5G05800.1 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
| Msa0472050 | AT5G05800.5 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
| Msa0472050 | AT5G05800.3 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
| Msa0472050 | AT5G05800.2 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
| Msa0472050 | AT5G05800.4 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
Find 79 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCGTTGGAAAAGTTTA+AGG | 0.170316 | 3_3:+74441690 | Msa0472050:CDS |
| CTGAAGCATAACACCGGATT+TGG | 0.286208 | 3_3:+74440736 | Msa0472050:CDS |
| GATATAACCTGTATTTGTTT+AGG | 0.291138 | 3_3:+74441785 | Msa0472050:three_prime_UTR |
| AGAACACTGAGAAGCGAAAA+TGG | 0.300690 | 3_3:+74439077 | Msa0472050:CDS |
| AAAACTTTCGTTACAAAATC+AGG | 0.317317 | 3_3:-74440535 | None:intergenic |
| CTCGATAAGAGGAAAATAAA+AGG | 0.319977 | 3_3:-74441961 | None:intergenic |
| ATCTTTGCCTTTAGTTGATC+AGG | 0.321053 | 3_3:-74440676 | None:intergenic |
| CATCTGTGTTTGGTGGGTCT+TGG | 0.324547 | 3_3:-74441330 | None:intergenic |
| AGCATGGGCTCAAGTTTCTT+TGG | 0.334501 | 3_3:+74441540 | Msa0472050:CDS |
| TGTAATTATGTTTGAAGTCC+AGG | 0.343300 | 3_3:+74438983 | Msa0472050:exon |
| AAGAAGAAGCAAGGTGTAGA+TGG | 0.344753 | 3_3:-74439146 | None:intergenic |
| ATGTGATGTAGACTCCTTCT+TGG | 0.355967 | 3_3:-74441497 | None:intergenic |
| ATCTGTGTTTGGTGGGTCTT+GGG | 0.406768 | 3_3:-74441329 | None:intergenic |
| CTAGTATGAAACACACCATT+TGG | 0.419336 | 3_3:-74440598 | None:intergenic |
| GTGTGACCATTACAAGTTGC+TGG | 0.423848 | 3_3:+74441255 | Msa0472050:CDS |
| TACTTATCTAGTATTTGTAT+AGG | 0.429679 | 3_3:+74441850 | Msa0472050:three_prime_UTR |
| GGATGGGTACTTAGGCTCTA+AGG | 0.431894 | 3_3:+74441763 | Msa0472050:CDS |
| TTTCTTTGGTAAGAGCTGAT+AGG | 0.431958 | 3_3:+74441554 | Msa0472050:CDS |
| AAAAGTTTAAGGATTCTGAT+TGG | 0.433232 | 3_3:+74441701 | Msa0472050:CDS |
| TTATTTCCAGCAACTTGTAA+TGG | 0.434209 | 3_3:-74441261 | None:intergenic |
| GACATTTCAGATGATTCCTA+TGG | 0.446146 | 3_3:+74441667 | Msa0472050:CDS |
| AAAACACGATACTCGATAAG+AGG | 0.455221 | 3_3:-74441972 | None:intergenic |
| TTGATACGGTCGATTAGTTA+TGG | 0.456557 | 3_3:-74440653 | None:intergenic |
| TTCAGCATTCCAGCCAAATC+CGG | 0.456604 | 3_3:-74440749 | None:intergenic |
| CAATACATCAACAATGGGAA+TGG | 0.467040 | 3_3:+74441373 | Msa0472050:CDS |
| AAGTGTGTGGCTGCTCTCGA+TGG | 0.472530 | 3_3:+74441637 | Msa0472050:CDS |
| ACTAGAACCTAAACAAATAC+AGG | 0.475962 | 3_3:-74441792 | None:intergenic |
| TTTCGTCATCTGTGTTTGGT+GGG | 0.480692 | 3_3:-74441336 | None:intergenic |
| CTGATAGGTTAAGAAGGGAT+AGG | 0.484536 | 3_3:+74441569 | Msa0472050:CDS |
| AGCATAACACCGGATTTGGC+TGG | 0.484895 | 3_3:+74440740 | Msa0472050:CDS |
| TAGAGAAGTAAACAATCATA+AGG | 0.485275 | 3_3:-74441875 | None:intergenic |
| GCTGCACAGTTTCAAAAGAA+AGG | 0.486109 | 3_3:+74441232 | Msa0472050:CDS |
| ATGATCAATACATCAACAAT+GGG | 0.488653 | 3_3:+74441368 | Msa0472050:CDS |
| ATGGTTGATGAAGTTACAAA+AGG | 0.489652 | 3_3:+74440568 | Msa0472050:CDS |
| TAATCATGTGCATGTTGATA+AGG | 0.492675 | 3_3:+74441402 | Msa0472050:CDS |
| GTTTAAGGATTCTGATTGGA+GGG | 0.496068 | 3_3:+74441705 | Msa0472050:CDS |
| ACAAAAGGAAATATGCCAAA+TGG | 0.496204 | 3_3:+74440583 | Msa0472050:CDS |
| ACATTAATGAGACAAAGCTT+TGG | 0.497947 | 3_3:+74440512 | Msa0472050:CDS |
| GAATGAGGCACTTGCAGCAT+GGG | 0.501641 | 3_3:+74441525 | Msa0472050:CDS |
| TATACAAATACTAGATAAGT+AGG | 0.501973 | 3_3:-74441848 | None:intergenic |
| TAAGAGCTGATAGGTTAAGA+AGG | 0.504282 | 3_3:+74441563 | Msa0472050:CDS |
| GTAATTATGTTTGAAGTCCA+GGG | 0.509433 | 3_3:+74438984 | Msa0472050:exon |
| TTTAGTTGATCAGGTTGATA+CGG | 0.511505 | 3_3:-74440667 | None:intergenic |
| AATACATCAACAATGGGAAT+GGG | 0.512612 | 3_3:+74441374 | Msa0472050:CDS |
| AAAAGTGAAAGAGCTAAAAT+GGG | 0.512721 | 3_3:+74438862 | Msa0472050:five_prime_UTR |
| CTGCACAGTTTCAAAAGAAA+GGG | 0.519886 | 3_3:+74441233 | Msa0472050:CDS |
| TTATTGTTACTTAGTATGAC+AGG | 0.524867 | 3_3:+74442001 | Msa0472050:three_prime_UTR |
| TGAATAGAACTCACGATACA+TGG | 0.530708 | 3_3:-74440713 | None:intergenic |
| AAGAGCTGATAGGTTAAGAA+GGG | 0.537119 | 3_3:+74441564 | Msa0472050:CDS |
| GGAAGCGTGGATGGGTACTT+AGG | 0.537157 | 3_3:+74441755 | Msa0472050:CDS |
| GATGATCAATACATCAACAA+TGG | 0.551531 | 3_3:+74441367 | Msa0472050:CDS |
| CACTCGCAGTGAAAAGCGAC+AGG | 0.557370 | 3_3:+74441462 | Msa0472050:CDS |
| GTATCAACCTGATCAACTAA+AGG | 0.566076 | 3_3:+74440669 | Msa0472050:CDS |
| AGTTTAAGGATTCTGATTGG+AGG | 0.570217 | 3_3:+74441704 | Msa0472050:CDS |
| ATCGAGAGCAGCCACACACT+TGG | 0.570899 | 3_3:-74441635 | None:intergenic |
| AGTGTGTGGCTGCTCTCGAT+GGG | 0.579630 | 3_3:+74441638 | Msa0472050:CDS |
| AACTAAAGGCAAAGATGCAT+AGG | 0.582306 | 3_3:+74440683 | Msa0472050:CDS |
| GTAATGAGAGGAAGCGTGGA+TGG | 0.584078 | 3_3:+74441746 | Msa0472050:CDS |
| TGATTCCTATGGAAAAGCGT+TGG | 0.584496 | 3_3:+74441678 | Msa0472050:CDS |
| AGCGAAAATGGCGATTTCGA+CGG | 0.590473 | 3_3:+74439089 | Msa0472050:CDS |
| TACATCACATCATATGAATG+AGG | 0.591772 | 3_3:+74441510 | Msa0472050:CDS |
| TAATGAGAGGAAGCGTGGAT+GGG | 0.591816 | 3_3:+74441747 | Msa0472050:CDS |
| TGAATGAGGCACTTGCAGCA+TGG | 0.593350 | 3_3:+74441524 | Msa0472050:CDS |
| TTGTTCTCTTACCAAGTGTG+TGG | 0.604130 | 3_3:+74441624 | Msa0472050:CDS |
| TAATTATGTTTGAAGTCCAG+GGG | 0.605620 | 3_3:+74438985 | Msa0472050:exon |
| ACCGTGCTTCTTCTTCTCTG+CGG | 0.616187 | 3_3:+74439189 | Msa0472050:CDS |
| GGTTCATGTGAGATCCAAGA+AGG | 0.621915 | 3_3:+74441483 | Msa0472050:CDS |
| ACCGCAGAGAAGAAGAAGCA+CGG | 0.624330 | 3_3:-74439190 | None:intergenic |
| ACTCAACTTATACATCATTG+AGG | 0.624896 | 3_3:-74440629 | None:intergenic |
| ATGCGTAATGAGAGGAAGCG+TGG | 0.636738 | 3_3:+74441742 | Msa0472050:CDS |
| ACGCTTCCTCTCATTACGCA+TGG | 0.637819 | 3_3:-74441740 | None:intergenic |
| AAGAAGGGATAGGAGTGCAG+AGG | 0.647414 | 3_3:+74441579 | Msa0472050:CDS |
| GTGTGTTTCATACTAGAACA+TGG | 0.658064 | 3_3:+74440605 | Msa0472050:CDS |
| AAATAAGAAAAGTGAAAACA+CGG | 0.659306 | 3_3:+74438929 | Msa0472050:five_prime_UTR |
| GCGGTGGAGAAGAAGAAGCA+AGG | 0.660951 | 3_3:-74439155 | None:intergenic |
| TTATCGCCATGCGTAATGAG+AGG | 0.662680 | 3_3:+74441734 | Msa0472050:CDS |
| ACGGTAGAGAAGAAGCGCGG+TGG | 0.673948 | 3_3:-74439171 | None:intergenic |
| TATTCACTGAAGCATAACAC+CGG | 0.679933 | 3_3:+74440730 | Msa0472050:CDS |
| AGCACGGTAGAGAAGAAGCG+CGG | 0.713678 | 3_3:-74439174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTTTTATCTAAAC+AGG | - | chr3_3:74439522-74439541 | None:intergenic | 15.0% |
| !! | TTAAATGCTTATTCAATTAA+TGG | - | chr3_3:74440071-74440090 | None:intergenic | 15.0% |
| !! | TGATTATATATATACCATAT+TGG | - | chr3_3:74440958-74440977 | None:intergenic | 15.0% |
| !! | ATGGTATATATATAATCATT+TGG | + | chr3_3:74440960-74440979 | Msa0472050:intron | 15.0% |
| !! | AAATAAGAAAAGTGAAAACA+CGG | + | chr3_3:74438929-74438948 | Msa0472050:five_prime_UTR | 20.0% |
| !! | AGTAAAAAAATCGCTATATT+AGG | - | chr3_3:74439292-74439311 | None:intergenic | 20.0% |
| !! | AAAAACACAAAATCATAGAA+CGG | - | chr3_3:74439344-74439363 | None:intergenic | 20.0% |
| !!! | TTGAATTTTACCACTTTTAA+TGG | + | chr3_3:74440830-74440849 | Msa0472050:intron | 20.0% |
| !!! | TGAATTTTACCACTTTTAAT+GGG | + | chr3_3:74440831-74440850 | Msa0472050:intron | 20.0% |
| !! | ATTTATCATAATTCCAACAA+GGG | - | chr3_3:74440935-74440954 | None:intergenic | 20.0% |
| !! | GAATTATGATAAATCCAATA+TGG | + | chr3_3:74440941-74440960 | Msa0472050:intron | 20.0% |
| !! | TATAATCATTTGGTACATAT+TGG | + | chr3_3:74440970-74440989 | Msa0472050:intron | 20.0% |
| !! | AAATACAAACAAACACAATA+TGG | - | chr3_3:74441084-74441103 | None:intergenic | 20.0% |
| !! | TATACAAATACTAGATAAGT+AGG | - | chr3_3:74441851-74441870 | None:intergenic | 20.0% |
| !! | TACTTATCTAGTATTTGTAT+AGG | + | chr3_3:74441850-74441869 | Msa0472050:three_prime_UTR | 20.0% |
| ! | AAAAAGTGAAAGAGCTAAAA+TGG | + | chr3_3:74438861-74438880 | Msa0472050:five_prime_UTR | 25.0% |
| ! | AAAAGTGAAAGAGCTAAAAT+GGG | + | chr3_3:74438862-74438881 | Msa0472050:five_prime_UTR | 25.0% |
| ! | TAAAAAAATGATAATACCCC+TGG | - | chr3_3:74439004-74439023 | None:intergenic | 25.0% |
| !! | TCTATGTAAATTTGAGATTG+CGG | + | chr3_3:74439368-74439387 | Msa0472050:intron | 25.0% |
| ! | TGTATCTTTCAATATTCACA+CGG | + | chr3_3:74439780-74439799 | Msa0472050:intron | 25.0% |
| ! | AAATATGTAGCCATCTATTA+GGG | - | chr3_3:74439970-74439989 | None:intergenic | 25.0% |
| !! | CAAAAATATTCGTGTTTTCT+CGG | + | chr3_3:74440262-74440281 | Msa0472050:intron | 25.0% |
| ! | GACTAAACTGTAAAAATAGA+AGG | - | chr3_3:74440318-74440337 | None:intergenic | 25.0% |
| !!! | ATGCGTATTTTTATGATAGA+TGG | + | chr3_3:74440477-74440496 | Msa0472050:intron | 25.0% |
| ! | AAAACTTTCGTTACAAAATC+AGG | - | chr3_3:74440538-74440557 | None:intergenic | 25.0% |
| !! | GAAAGTTTTCATTGACATAA+TGG | + | chr3_3:74440549-74440568 | Msa0472050:CDS | 25.0% |
| ! | AATCTGGAAAAATTATCTGA+AGG | + | chr3_3:74440797-74440816 | Msa0472050:intron | 25.0% |
| ! | GATTTATCATAATTCCAACA+AGG | - | chr3_3:74440936-74440955 | None:intergenic | 25.0% |
| ! | TCAGAAACACAGTATTTATT+TGG | - | chr3_3:74441034-74441053 | None:intergenic | 25.0% |
| !!! | TTTCATTGATTCTCTTACTT+CGG | + | chr3_3:74441147-74441166 | Msa0472050:intron | 25.0% |
| ! | ATACAATGAGAATAACAGAA+AGG | - | chr3_3:74441175-74441194 | None:intergenic | 25.0% |
| ! | TGATATGCATATATCATTTC+AGG | + | chr3_3:74441198-74441217 | Msa0472050:intron | 25.0% |
| ! | ATGATCAATACATCAACAAT+GGG | + | chr3_3:74441368-74441387 | Msa0472050:CDS | 25.0% |
| ! | AAAAGTTTAAGGATTCTGAT+TGG | + | chr3_3:74441701-74441720 | Msa0472050:CDS | 25.0% |
| ! | GATATAACCTGTATTTGTTT+AGG | + | chr3_3:74441785-74441804 | Msa0472050:three_prime_UTR | 25.0% |
| ! | TAGAGAAGTAAACAATCATA+AGG | - | chr3_3:74441878-74441897 | None:intergenic | 25.0% |
| !!! | AAAAGTGTCACTTTTCTCAA+TGG | + | chr3_3:74438954-74438973 | Msa0472050:five_prime_UTR | 30.0% |
| ! | TGTAATTATGTTTGAAGTCC+AGG | + | chr3_3:74438983-74439002 | Msa0472050:exon | 30.0% |
| ! | GTAATTATGTTTGAAGTCCA+GGG | + | chr3_3:74438984-74439003 | Msa0472050:exon | 30.0% |
| ! | TAATTATGTTTGAAGTCCAG+GGG | + | chr3_3:74438985-74439004 | Msa0472050:exon | 30.0% |
| TGTAGATGGAAGAAAAATCA+CGG | - | chr3_3:74439135-74439154 | None:intergenic | 30.0% | |
| GATTGATATTTGCAGCTTAT+TGG | + | chr3_3:74439483-74439502 | Msa0472050:intron | 30.0% | |
| CAAATATGTAGCCATCTATT+AGG | - | chr3_3:74439971-74439990 | None:intergenic | 30.0% | |
| TAGATGGCTACATATTTGTT+TGG | + | chr3_3:74439973-74439992 | Msa0472050:intron | 30.0% | |
| TTTACTAACAAGACAAGAAG+TGG | - | chr3_3:74440181-74440200 | None:intergenic | 30.0% | |
| ACAAAAATAAGGCTATACCT+AGG | - | chr3_3:74440215-74440234 | None:intergenic | 30.0% | |
| AGAGAGAGCAAATAAAATCA+AGG | - | chr3_3:74440372-74440391 | None:intergenic | 30.0% | |
| !! | TTGATTTTATTTGCTCTCTC+TGG | + | chr3_3:74440371-74440390 | Msa0472050:intron | 30.0% |
| ACATTAATGAGACAAAGCTT+TGG | + | chr3_3:74440512-74440531 | Msa0472050:CDS | 30.0% | |
| !! | ATGGTTGATGAAGTTACAAA+AGG | + | chr3_3:74440568-74440587 | Msa0472050:CDS | 30.0% |
| ACAAAAGGAAATATGCCAAA+TGG | + | chr3_3:74440583-74440602 | Msa0472050:CDS | 30.0% | |
| ACTCAACTTATACATCATTG+AGG | - | chr3_3:74440632-74440651 | None:intergenic | 30.0% | |
| !! | TTTAGTTGATCAGGTTGATA+CGG | - | chr3_3:74440670-74440689 | None:intergenic | 30.0% |
| GGAAAAATTATCTGAAGGTA+TGG | + | chr3_3:74440802-74440821 | Msa0472050:intron | 30.0% | |
| ATCATATCACCCATTAAAAG+TGG | - | chr3_3:74440843-74440862 | None:intergenic | 30.0% | |
| CAAGATTCATGATTCTAGAT+AGG | - | chr3_3:74441109-74441128 | None:intergenic | 30.0% | |
| TTATTTCCAGCAACTTGTAA+TGG | - | chr3_3:74441264-74441283 | None:intergenic | 30.0% | |
| TTCAACAAAAACAATGCAAC+TGG | + | chr3_3:74441286-74441305 | Msa0472050:CDS | 30.0% | |
| GATGATCAATACATCAACAA+TGG | + | chr3_3:74441367-74441386 | Msa0472050:CDS | 30.0% | |
| AATACATCAACAATGGGAAT+GGG | + | chr3_3:74441374-74441393 | Msa0472050:CDS | 30.0% | |
| TAATCATGTGCATGTTGATA+AGG | + | chr3_3:74441402-74441421 | Msa0472050:CDS | 30.0% | |
| TACATCACATCATATGAATG+AGG | + | chr3_3:74441510-74441529 | Msa0472050:CDS | 30.0% | |
| !! | AAAAGCGTTGGAAAAGTTTA+AGG | + | chr3_3:74441690-74441709 | Msa0472050:CDS | 30.0% |
| ACTAGAACCTAAACAAATAC+AGG | - | chr3_3:74441795-74441814 | None:intergenic | 30.0% | |
| CTCGATAAGAGGAAAATAAA+AGG | - | chr3_3:74441964-74441983 | None:intergenic | 30.0% | |
| !!! | GTTAGTTTTTCTGCAGAATG+AGG | - | chr3_3:74439054-74439073 | None:intergenic | 35.0% |
| ATATTTGCAGCTTATTGGTC+TGG | + | chr3_3:74439488-74439507 | Msa0472050:intron | 35.0% | |
| TTCAATATTCACACGGATAC+CGG | + | chr3_3:74439787-74439806 | Msa0472050:intron | 35.0% | |
| TGCACACAAGAACTAGAAAA+AGG | - | chr3_3:74439933-74439952 | None:intergenic | 35.0% | |
| TATGCTTGTTCCCTAATAGA+TGG | + | chr3_3:74439957-74439976 | Msa0472050:intron | 35.0% | |
| GTTTGAGCTCAATACTTCAA+AGG | - | chr3_3:74440116-74440135 | None:intergenic | 35.0% | |
| TTTACTTGTACAACCCAGTT+TGG | - | chr3_3:74440146-74440165 | None:intergenic | 35.0% | |
| GGTTGTACAAGTAAAGAACA+GGG | + | chr3_3:74440151-74440170 | Msa0472050:intron | 35.0% | |
| GTTGTACAAGTAAAGAACAG+GGG | + | chr3_3:74440152-74440171 | Msa0472050:intron | 35.0% | |
| ! | TCTTGTCTTGTTAGTAAAGC+TGG | + | chr3_3:74440183-74440202 | Msa0472050:intron | 35.0% |
| CAAGACTTGGCACAAAAATA+AGG | - | chr3_3:74440226-74440245 | None:intergenic | 35.0% | |
| TATCTGTCAGATACAAGACT+TGG | - | chr3_3:74440239-74440258 | None:intergenic | 35.0% | |
| CTAGTATGAAACACACCATT+TGG | - | chr3_3:74440601-74440620 | None:intergenic | 35.0% | |
| GTGTGTTTCATACTAGAACA+TGG | + | chr3_3:74440605-74440624 | Msa0472050:CDS | 35.0% | |
| ! | TTGATACGGTCGATTAGTTA+TGG | - | chr3_3:74440656-74440675 | None:intergenic | 35.0% |
| GTATCAACCTGATCAACTAA+AGG | + | chr3_3:74440669-74440688 | Msa0472050:CDS | 35.0% | |
| ATCTTTGCCTTTAGTTGATC+AGG | - | chr3_3:74440679-74440698 | None:intergenic | 35.0% | |
| AACTAAAGGCAAAGATGCAT+AGG | + | chr3_3:74440683-74440702 | Msa0472050:CDS | 35.0% | |
| TGAATAGAACTCACGATACA+TGG | - | chr3_3:74440716-74440735 | None:intergenic | 35.0% | |
| TATTCACTGAAGCATAACAC+CGG | + | chr3_3:74440730-74440749 | Msa0472050:CDS | 35.0% | |
| TCATGCTTCTATTAGTGACA+TGG | + | chr3_3:74440888-74440907 | Msa0472050:intron | 35.0% | |
| TCACATTTCAATACCCTTGT+TGG | + | chr3_3:74440919-74440938 | Msa0472050:intron | 35.0% | |
| !!! | TTTTGAAACTGTGCAGCTTT+GGG | - | chr3_3:74441229-74441248 | None:intergenic | 35.0% |
| CTGCACAGTTTCAAAAGAAA+GGG | + | chr3_3:74441233-74441252 | Msa0472050:CDS | 35.0% | |
| CAATACATCAACAATGGGAA+TGG | + | chr3_3:74441373-74441392 | Msa0472050:CDS | 35.0% | |
| TTTCTTTGGTAAGAGCTGAT+AGG | + | chr3_3:74441554-74441573 | Msa0472050:CDS | 35.0% | |
| TAAGAGCTGATAGGTTAAGA+AGG | + | chr3_3:74441563-74441582 | Msa0472050:CDS | 35.0% | |
| AAGAGCTGATAGGTTAAGAA+GGG | + | chr3_3:74441564-74441583 | Msa0472050:CDS | 35.0% | |
| GACATTTCAGATGATTCCTA+TGG | + | chr3_3:74441667-74441686 | Msa0472050:CDS | 35.0% | |
| AGTTTAAGGATTCTGATTGG+AGG | + | chr3_3:74441704-74441723 | Msa0472050:CDS | 35.0% | |
| GTTTAAGGATTCTGATTGGA+GGG | + | chr3_3:74441705-74441724 | Msa0472050:CDS | 35.0% | |
| AAAACACGATACTCGATAAG+AGG | - | chr3_3:74441975-74441994 | None:intergenic | 35.0% | |
| AGAACACTGAGAAGCGAAAA+TGG | + | chr3_3:74439077-74439096 | Msa0472050:CDS | 40.0% | |
| AGAAAAATCACGGCGAAGAT+CGG | - | chr3_3:74439125-74439144 | None:intergenic | 40.0% | |
| AAGAAGAAGCAAGGTGTAGA+TGG | - | chr3_3:74439149-74439168 | None:intergenic | 40.0% | |
| !!! | TTCTTCTCTGCGGTTTTTTC+AGG | + | chr3_3:74439199-74439218 | Msa0472050:CDS | 40.0% |
| TCAAACAGCTTAGCCAAACT+GGG | + | chr3_3:74440130-74440149 | Msa0472050:intron | 40.0% | |
| GGGTTGTACAAGTAAAGAAC+AGG | + | chr3_3:74440150-74440169 | Msa0472050:intron | 40.0% | |
| !!! | CTCTCTGGTGCTACTTTTAT+AGG | + | chr3_3:74440386-74440405 | Msa0472050:intron | 40.0% |
| GTTACTGCAACTGAAGAATC+TGG | + | chr3_3:74440781-74440800 | Msa0472050:intron | 40.0% | |
| TTGGCGCAATGAACAAAACT+GGG | - | chr3_3:74441015-74441034 | None:intergenic | 40.0% | |
| TTTGGCGCAATGAACAAAAC+TGG | - | chr3_3:74441016-74441035 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAACTGTGCAGCTT+TGG | - | chr3_3:74441230-74441249 | None:intergenic | 40.0% |
| GCTGCACAGTTTCAAAAGAA+AGG | + | chr3_3:74441232-74441251 | Msa0472050:CDS | 40.0% | |
| TTTCGTCATCTGTGTTTGGT+GGG | - | chr3_3:74441339-74441358 | None:intergenic | 40.0% | |
| ! | TTTTCGTCATCTGTGTTTGG+TGG | - | chr3_3:74441340-74441359 | None:intergenic | 40.0% |
| ! | TCGTTTTCGTCATCTGTGTT+TGG | - | chr3_3:74441343-74441362 | None:intergenic | 40.0% |
| ATGTGATGTAGACTCCTTCT+TGG | - | chr3_3:74441500-74441519 | None:intergenic | 40.0% | |
| CTGATAGGTTAAGAAGGGAT+AGG | + | chr3_3:74441569-74441588 | Msa0472050:CDS | 40.0% | |
| TTGTTCTCTTACCAAGTGTG+TGG | + | chr3_3:74441624-74441643 | Msa0472050:CDS | 40.0% | |
| ! | TGATTCCTATGGAAAAGCGT+TGG | + | chr3_3:74441678-74441697 | Msa0472050:CDS | 40.0% |
| ! | CTTTTCCAACGCTTTTCCAT+AGG | - | chr3_3:74441686-74441705 | None:intergenic | 40.0% |
| AGCGAAAATGGCGATTTCGA+CGG | + | chr3_3:74439089-74439108 | Msa0472050:CDS | 45.0% | |
| !! | CCGTTGACGAGTTTTGTATC+CGG | - | chr3_3:74439809-74439828 | None:intergenic | 45.0% |
| CCGGATACAAAACTCGTCAA+CGG | + | chr3_3:74439806-74439825 | Msa0472050:intron | 45.0% | |
| CTCAAACAGCTTAGCCAAAC+TGG | + | chr3_3:74440129-74440148 | Msa0472050:intron | 45.0% | |
| AGTAAAGCTGGACTGAACCT+AGG | + | chr3_3:74440195-74440214 | Msa0472050:intron | 45.0% | |
| CTGAAGCATAACACCGGATT+TGG | + | chr3_3:74440736-74440755 | Msa0472050:CDS | 45.0% | |
| TTCAGCATTCCAGCCAAATC+CGG | - | chr3_3:74440752-74440771 | None:intergenic | 45.0% | |
| GTGTGACCATTACAAGTTGC+TGG | + | chr3_3:74441255-74441274 | Msa0472050:CDS | 45.0% | |
| ! | ATCTGTGTTTGGTGGGTCTT+GGG | - | chr3_3:74441332-74441351 | None:intergenic | 45.0% |
| GGTTCATGTGAGATCCAAGA+AGG | + | chr3_3:74441483-74441502 | Msa0472050:CDS | 45.0% | |
| AGCATGGGCTCAAGTTTCTT+TGG | + | chr3_3:74441540-74441559 | Msa0472050:CDS | 45.0% | |
| TTATCGCCATGCGTAATGAG+AGG | + | chr3_3:74441734-74441753 | Msa0472050:CDS | 45.0% | |
| ! | TAATGAGAGGAAGCGTGGAT+GGG | + | chr3_3:74441747-74441766 | Msa0472050:CDS | 45.0% |
| !!! | ATTTTTTTATCAAAAAAATT+TGG | + | chr3_3:74439015-74439034 | Msa0472050:CDS | 5.0% |
| ACCGTGCTTCTTCTTCTCTG+CGG | + | chr3_3:74439189-74439208 | Msa0472050:CDS | 50.0% | |
| ACCGCAGAGAAGAAGAAGCA+CGG | - | chr3_3:74439193-74439212 | None:intergenic | 50.0% | |
| AGCATAACACCGGATTTGGC+TGG | + | chr3_3:74440740-74440759 | Msa0472050:CDS | 50.0% | |
| ! | CATCTGTGTTTGGTGGGTCT+TGG | - | chr3_3:74441333-74441352 | None:intergenic | 50.0% |
| ! | TGAATGAGGCACTTGCAGCA+TGG | + | chr3_3:74441524-74441543 | Msa0472050:CDS | 50.0% |
| ! | GAATGAGGCACTTGCAGCAT+GGG | + | chr3_3:74441525-74441544 | Msa0472050:CDS | 50.0% |
| ! | AAGAAGGGATAGGAGTGCAG+AGG | + | chr3_3:74441579-74441598 | Msa0472050:CDS | 50.0% |
| ACGCTTCCTCTCATTACGCA+TGG | - | chr3_3:74441743-74441762 | None:intergenic | 50.0% | |
| ATGCGTAATGAGAGGAAGCG+TGG | + | chr3_3:74441742-74441761 | Msa0472050:CDS | 50.0% | |
| ! | GTAATGAGAGGAAGCGTGGA+TGG | + | chr3_3:74441746-74441765 | Msa0472050:CDS | 50.0% |
| GGATGGGTACTTAGGCTCTA+AGG | + | chr3_3:74441763-74441782 | Msa0472050:CDS | 50.0% | |
| GCGGTGGAGAAGAAGAAGCA+AGG | - | chr3_3:74439158-74439177 | None:intergenic | 55.0% | |
| AGCACGGTAGAGAAGAAGCG+CGG | - | chr3_3:74439177-74439196 | None:intergenic | 55.0% | |
| CACTCGCAGTGAAAAGCGAC+AGG | + | chr3_3:74441462-74441481 | Msa0472050:CDS | 55.0% | |
| ATCGAGAGCAGCCACACACT+TGG | - | chr3_3:74441638-74441657 | None:intergenic | 55.0% | |
| AAGTGTGTGGCTGCTCTCGA+TGG | + | chr3_3:74441637-74441656 | Msa0472050:CDS | 55.0% | |
| AGTGTGTGGCTGCTCTCGAT+GGG | + | chr3_3:74441638-74441657 | Msa0472050:CDS | 55.0% | |
| ! | GGAAGCGTGGATGGGTACTT+AGG | + | chr3_3:74441755-74441774 | Msa0472050:CDS | 55.0% |
| ! | ACGGTAGAGAAGAAGCGCGG+TGG | - | chr3_3:74439174-74439193 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 74438860 | 74442020 | 74438860 | ID=Msa0472050;Name=Msa0472050 |
| chr3_3 | mRNA | 74438860 | 74442020 | 74438860 | ID=Msa0472050-mRNA-1;Parent=Msa0472050;Name=Msa0472050-mRNA-1;_AED=0.21;_eAED=0.21;_QI=130|0.5|0.66|1|1|1|3|237|359 |
| chr3_3 | exon | 74438860 | 74439220 | 74438860 | ID=Msa0472050-mRNA-1:exon:19048;Parent=Msa0472050-mRNA-1 |
| chr3_3 | exon | 74440496 | 74440780 | 74440496 | ID=Msa0472050-mRNA-1:exon:19049;Parent=Msa0472050-mRNA-1 |
| chr3_3 | exon | 74441220 | 74442020 | 74441220 | ID=Msa0472050-mRNA-1:exon:19050;Parent=Msa0472050-mRNA-1 |
| chr3_3 | five_prime_UTR | 74438860 | 74438989 | 74438860 | ID=Msa0472050-mRNA-1:five_prime_utr;Parent=Msa0472050-mRNA-1 |
| chr3_3 | CDS | 74438990 | 74439220 | 74438990 | ID=Msa0472050-mRNA-1:cds;Parent=Msa0472050-mRNA-1 |
| chr3_3 | CDS | 74440496 | 74440780 | 74440496 | ID=Msa0472050-mRNA-1:cds;Parent=Msa0472050-mRNA-1 |
| chr3_3 | CDS | 74441220 | 74441783 | 74441220 | ID=Msa0472050-mRNA-1:cds;Parent=Msa0472050-mRNA-1 |
| chr3_3 | three_prime_UTR | 74441784 | 74442020 | 74441784 | ID=Msa0472050-mRNA-1:three_prime_utr;Parent=Msa0472050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
