Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230110 | XP_039684367.1 | 90.203 | 296 | 16 | 1 | 77 | 359 | 50 | 345 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230110 | A0A396GQG1 | 88.814 | 295 | 20 | 1 | 78 | 359 | 1 | 295 | 0.0 | 543 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0230110 | Msa0457910 | 0.823967 | 1.041550e-53 | -8.615850e-47 |
| Msa0230110 | Msa0472050 | 0.941999 | 1.557762e-101 | -8.615850e-47 |
| Msa0230110 | Msa0933080 | 0.873071 | 1.953545e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230110 | MtrunA17_Chr8g0360271 | 88.814 | 295 | 20 | 1 | 78 | 359 | 1 | 295 | 0.0 | 543 |
| Msa0230110 | MtrunA17_Chr3g0110301 | 70.769 | 65 | 6 | 1 | 135 | 186 | 26 | 90 | 2.93e-24 | 95.9 |
| Msa0230110 | MtrunA17_Chr3g0084111 | 36.364 | 165 | 68 | 4 | 196 | 359 | 5 | 133 | 9.75e-22 | 89.7 |
| Msa0230110 | MtrunA17_Chr1g0156481 | 25.085 | 295 | 167 | 11 | 90 | 353 | 18 | 289 | 6.66e-12 | 65.5 |
| Msa0230110 | MtrunA17_Chr5g0405761 | 21.786 | 280 | 192 | 6 | 90 | 356 | 53 | 318 | 8.29e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230110 | AT5G05800.1 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
| Msa0230110 | AT5G05800.5 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
| Msa0230110 | AT5G05800.3 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
| Msa0230110 | AT5G05800.2 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
| Msa0230110 | AT5G05800.4 | 21.141 | 298 | 202 | 7 | 78 | 359 | 158 | 438 | 4.17e-11 | 64.3 |
Find 79 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCGTTGGAAAAGTTTA+AGG | 0.170316 | 2_2:-1967329 | Msa0230110:CDS |
| CTGAAGCATAACACCGGATT+TGG | 0.286208 | 2_2:-1968283 | Msa0230110:CDS |
| GATATAACCTGTATTTGTTT+AGG | 0.291138 | 2_2:-1967234 | Msa0230110:three_prime_UTR |
| AGAACACTGAGAAGCGAAAA+TGG | 0.300690 | 2_2:-1969942 | Msa0230110:CDS |
| AAAACTTTCGTTACAAAATC+AGG | 0.317317 | 2_2:+1968484 | None:intergenic |
| CTCGATAAGAGGAAAATAAA+AGG | 0.319977 | 2_2:+1967058 | None:intergenic |
| ATCTTTGCCTTTAGTTGATC+AGG | 0.321053 | 2_2:+1968343 | None:intergenic |
| CATCTGTGTTTGGTGGGTCT+TGG | 0.324547 | 2_2:+1967689 | None:intergenic |
| AGCATGGGCTCAAGTTTCTT+TGG | 0.334501 | 2_2:-1967479 | Msa0230110:CDS |
| TGTAATTATGTTTGAAGTCC+AGG | 0.343300 | 2_2:-1970036 | Msa0230110:exon |
| AAGAAGAAGCAAGGTGTAGA+TGG | 0.344753 | 2_2:+1969873 | None:intergenic |
| ATGTGATGTAGACTCCTTCT+TGG | 0.355967 | 2_2:+1967522 | None:intergenic |
| ATCTGTGTTTGGTGGGTCTT+GGG | 0.406768 | 2_2:+1967690 | None:intergenic |
| CTAGTATGAAACACACCATT+TGG | 0.419336 | 2_2:+1968421 | None:intergenic |
| GTGTGACCATTACAAGTTGC+TGG | 0.423848 | 2_2:-1967764 | Msa0230110:CDS |
| TACTTATCTAGTATTTGTAT+AGG | 0.429679 | 2_2:-1967169 | Msa0230110:three_prime_UTR |
| GGATGGGTACTTAGGCTCTA+AGG | 0.431894 | 2_2:-1967256 | Msa0230110:exon |
| TTTCTTTGGTAAGAGCTGAT+AGG | 0.431958 | 2_2:-1967465 | Msa0230110:CDS |
| AAAAGTTTAAGGATTCTGAT+TGG | 0.433232 | 2_2:-1967318 | Msa0230110:CDS |
| TTATTTCCAGCAACTTGTAA+TGG | 0.434209 | 2_2:+1967758 | None:intergenic |
| GACATTTCAGATGATTCCTA+TGG | 0.446146 | 2_2:-1967352 | Msa0230110:CDS |
| AAAACACGATACTCGATAAG+AGG | 0.455221 | 2_2:+1967047 | None:intergenic |
| TTGATACGGTCGATTAGTTA+TGG | 0.456557 | 2_2:+1968366 | None:intergenic |
| TTCAGCATTCCAGCCAAATC+CGG | 0.456604 | 2_2:+1968270 | None:intergenic |
| CAATACATCAACAATGGGAA+TGG | 0.467040 | 2_2:-1967646 | Msa0230110:CDS |
| AAGTGTGTGGCTGCTCTCGA+TGG | 0.472530 | 2_2:-1967382 | Msa0230110:CDS |
| ACTAGAACCTAAACAAATAC+AGG | 0.475962 | 2_2:+1967227 | None:intergenic |
| TTTCGTCATCTGTGTTTGGT+GGG | 0.480692 | 2_2:+1967683 | None:intergenic |
| CTGATAGGTTAAGAAGGGAT+AGG | 0.484536 | 2_2:-1967450 | Msa0230110:CDS |
| AGCATAACACCGGATTTGGC+TGG | 0.484895 | 2_2:-1968279 | Msa0230110:CDS |
| TAGAGAAGTAAACAATCATA+AGG | 0.485275 | 2_2:+1967144 | None:intergenic |
| GCTGCACAGTTTCAAAAGAA+AGG | 0.486109 | 2_2:-1967787 | Msa0230110:CDS |
| ATGATCAATACATCAACAAT+GGG | 0.488653 | 2_2:-1967651 | Msa0230110:CDS |
| ATGGTTGATGAAGTTACAAA+AGG | 0.489652 | 2_2:-1968451 | Msa0230110:CDS |
| TAATCATGTGCATGTTGATA+AGG | 0.492675 | 2_2:-1967617 | Msa0230110:CDS |
| GTTTAAGGATTCTGATTGGA+GGG | 0.496068 | 2_2:-1967314 | Msa0230110:CDS |
| ACAAAAGGAAATATGCCAAA+TGG | 0.496204 | 2_2:-1968436 | Msa0230110:CDS |
| ACATTAATGAGACAAAGCTT+TGG | 0.497947 | 2_2:-1968507 | Msa0230110:CDS |
| GAATGAGGCACTTGCAGCAT+GGG | 0.501641 | 2_2:-1967494 | Msa0230110:CDS |
| TATACAAATACTAGATAAGT+AGG | 0.501973 | 2_2:+1967171 | None:intergenic |
| TAAGAGCTGATAGGTTAAGA+AGG | 0.504282 | 2_2:-1967456 | Msa0230110:CDS |
| GTAATTATGTTTGAAGTCCA+GGG | 0.509433 | 2_2:-1970035 | Msa0230110:exon |
| TTTAGTTGATCAGGTTGATA+CGG | 0.511505 | 2_2:+1968352 | None:intergenic |
| AATACATCAACAATGGGAAT+GGG | 0.512612 | 2_2:-1967645 | Msa0230110:CDS |
| AAAAGTGAAAGAGCTAAAAT+GGG | 0.512721 | 2_2:-1970157 | Msa0230110:five_prime_UTR |
| CTGCACAGTTTCAAAAGAAA+GGG | 0.519886 | 2_2:-1967786 | Msa0230110:CDS |
| TTATTGTTACTTAGTATGAC+AGG | 0.524867 | 2_2:-1967018 | None:intergenic |
| TGAATAGAACTCACGATACA+TGG | 0.530708 | 2_2:+1968306 | None:intergenic |
| AAGAGCTGATAGGTTAAGAA+GGG | 0.537119 | 2_2:-1967455 | Msa0230110:CDS |
| GGAAGCGTGGATGGGTACTT+AGG | 0.537157 | 2_2:-1967264 | Msa0230110:CDS |
| GATGATCAATACATCAACAA+TGG | 0.551531 | 2_2:-1967652 | Msa0230110:CDS |
| CACTCGCAGTGAAAAGCGAC+AGG | 0.557370 | 2_2:-1967557 | Msa0230110:CDS |
| GTATCAACCTGATCAACTAA+AGG | 0.566076 | 2_2:-1968350 | Msa0230110:CDS |
| AGTTTAAGGATTCTGATTGG+AGG | 0.570217 | 2_2:-1967315 | Msa0230110:CDS |
| ATCGAGAGCAGCCACACACT+TGG | 0.570899 | 2_2:+1967384 | None:intergenic |
| AGTGTGTGGCTGCTCTCGAT+GGG | 0.579630 | 2_2:-1967381 | Msa0230110:CDS |
| AACTAAAGGCAAAGATGCAT+AGG | 0.582306 | 2_2:-1968336 | Msa0230110:CDS |
| GTAATGAGAGGAAGCGTGGA+TGG | 0.584078 | 2_2:-1967273 | Msa0230110:CDS |
| TGATTCCTATGGAAAAGCGT+TGG | 0.584496 | 2_2:-1967341 | Msa0230110:CDS |
| AGCGAAAATGGCGATTTCGA+CGG | 0.590473 | 2_2:-1969930 | Msa0230110:CDS |
| TACATCACATCATATGAATG+AGG | 0.591772 | 2_2:-1967509 | Msa0230110:CDS |
| TAATGAGAGGAAGCGTGGAT+GGG | 0.591816 | 2_2:-1967272 | Msa0230110:CDS |
| TGAATGAGGCACTTGCAGCA+TGG | 0.593350 | 2_2:-1967495 | Msa0230110:CDS |
| TTGTTCTCTTACCAAGTGTG+TGG | 0.604130 | 2_2:-1967395 | Msa0230110:CDS |
| TAATTATGTTTGAAGTCCAG+GGG | 0.605620 | 2_2:-1970034 | Msa0230110:exon |
| ACCGTGCTTCTTCTTCTCTG+CGG | 0.616187 | 2_2:-1969830 | Msa0230110:CDS |
| GGTTCATGTGAGATCCAAGA+AGG | 0.621915 | 2_2:-1967536 | Msa0230110:CDS |
| ACCGCAGAGAAGAAGAAGCA+CGG | 0.624330 | 2_2:+1969829 | None:intergenic |
| ACTCAACTTATACATCATTG+AGG | 0.624896 | 2_2:+1968390 | None:intergenic |
| ATGCGTAATGAGAGGAAGCG+TGG | 0.636738 | 2_2:-1967277 | Msa0230110:CDS |
| ACGCTTCCTCTCATTACGCA+TGG | 0.637819 | 2_2:+1967279 | None:intergenic |
| AAGAAGGGATAGGAGTGCAG+AGG | 0.647414 | 2_2:-1967440 | Msa0230110:CDS |
| GTGTGTTTCATACTAGAACA+TGG | 0.658064 | 2_2:-1968414 | Msa0230110:CDS |
| AAATAAGAAAAGTGAAAACA+CGG | 0.659306 | 2_2:-1970090 | Msa0230110:five_prime_UTR |
| GCGGTGGAGAAGAAGAAGCA+AGG | 0.660951 | 2_2:+1969864 | None:intergenic |
| TTATCGCCATGCGTAATGAG+AGG | 0.662680 | 2_2:-1967285 | Msa0230110:CDS |
| ACGGTAGAGAAGAAGCGCGG+TGG | 0.673948 | 2_2:+1969848 | None:intergenic |
| TATTCACTGAAGCATAACAC+CGG | 0.679933 | 2_2:-1968289 | Msa0230110:CDS |
| AGCACGGTAGAGAAGAAGCG+CGG | 0.713678 | 2_2:+1969845 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTTTTATCTAAAC+AGG | + | chr2_2:1967683-1967702 | None:intergenic | 15.0% |
| !! | TTAAATGCTTATTCAATTAA+TGG | + | chr2_2:1968232-1968251 | None:intergenic | 15.0% |
| !! | TGATTATATATATACCATAT+TGG | + | chr2_2:1969119-1969138 | None:intergenic | 15.0% |
| !! | ATGGTATATATATAATCATT+TGG | - | chr2_2:1969121-1969140 | Msa0230110:intron | 15.0% |
| !! | AAATAAGAAAAGTGAAAACA+CGG | - | chr2_2:1967090-1967109 | Msa0230110:three_prime_UTR | 20.0% |
| !! | AGTAAAAAAATCGCTATATT+AGG | + | chr2_2:1967453-1967472 | None:intergenic | 20.0% |
| !! | AAAAACACAAAATCATAGAA+CGG | + | chr2_2:1967505-1967524 | None:intergenic | 20.0% |
| !!! | TTGAATTTTACCACTTTTAA+TGG | - | chr2_2:1968991-1969010 | Msa0230110:intron | 20.0% |
| !!! | TGAATTTTACCACTTTTAAT+GGG | - | chr2_2:1968992-1969011 | Msa0230110:intron | 20.0% |
| !! | ATTTATCATAATTCCAACAA+GGG | + | chr2_2:1969096-1969115 | None:intergenic | 20.0% |
| !! | GAATTATGATAAATCCAATA+TGG | - | chr2_2:1969102-1969121 | Msa0230110:intron | 20.0% |
| !! | TATAATCATTTGGTACATAT+TGG | - | chr2_2:1969131-1969150 | Msa0230110:intron | 20.0% |
| !! | AAATACAAACAAACACAATA+TGG | + | chr2_2:1969245-1969264 | None:intergenic | 20.0% |
| !! | TATACAAATACTAGATAAGT+AGG | + | chr2_2:1970012-1970031 | None:intergenic | 20.0% |
| !! | TACTTATCTAGTATTTGTAT+AGG | - | chr2_2:1970011-1970030 | Msa0230110:CDS | 20.0% |
| ! | AAAAAGTGAAAGAGCTAAAA+TGG | - | chr2_2:1967022-1967041 | Msa0230110:three_prime_UTR | 25.0% |
| ! | AAAAGTGAAAGAGCTAAAAT+GGG | - | chr2_2:1967023-1967042 | Msa0230110:three_prime_UTR | 25.0% |
| ! | TAAAAAAATGATAATACCCC+TGG | + | chr2_2:1967165-1967184 | None:intergenic | 25.0% |
| !! | TCTATGTAAATTTGAGATTG+CGG | - | chr2_2:1967529-1967548 | Msa0230110:CDS | 25.0% |
| ! | TGTATCTTTCAATATTCACA+CGG | - | chr2_2:1967941-1967960 | Msa0230110:intron | 25.0% |
| ! | AAATATGTAGCCATCTATTA+GGG | + | chr2_2:1968131-1968150 | None:intergenic | 25.0% |
| !! | CAAAAATATTCGTGTTTTCT+CGG | - | chr2_2:1968423-1968442 | Msa0230110:CDS | 25.0% |
| ! | GACTAAACTGTAAAAATAGA+AGG | + | chr2_2:1968479-1968498 | None:intergenic | 25.0% |
| !!! | ATGCGTATTTTTATGATAGA+TGG | - | chr2_2:1968638-1968657 | Msa0230110:intron | 25.0% |
| ! | AAAACTTTCGTTACAAAATC+AGG | + | chr2_2:1968699-1968718 | None:intergenic | 25.0% |
| !! | GAAAGTTTTCATTGACATAA+TGG | - | chr2_2:1968710-1968729 | Msa0230110:intron | 25.0% |
| ! | AATCTGGAAAAATTATCTGA+AGG | - | chr2_2:1968958-1968977 | Msa0230110:intron | 25.0% |
| ! | GATTTATCATAATTCCAACA+AGG | + | chr2_2:1969097-1969116 | None:intergenic | 25.0% |
| ! | TCAGAAACACAGTATTTATT+TGG | + | chr2_2:1969195-1969214 | None:intergenic | 25.0% |
| !!! | TTTCATTGATTCTCTTACTT+CGG | - | chr2_2:1969308-1969327 | Msa0230110:intron | 25.0% |
| ! | ATACAATGAGAATAACAGAA+AGG | + | chr2_2:1969336-1969355 | None:intergenic | 25.0% |
| ! | TGATATGCATATATCATTTC+AGG | - | chr2_2:1969359-1969378 | Msa0230110:intron | 25.0% |
| ! | ATGATCAATACATCAACAAT+GGG | - | chr2_2:1969529-1969548 | Msa0230110:intron | 25.0% |
| ! | AAAAGTTTAAGGATTCTGAT+TGG | - | chr2_2:1969862-1969881 | Msa0230110:CDS | 25.0% |
| ! | GATATAACCTGTATTTGTTT+AGG | - | chr2_2:1969946-1969965 | Msa0230110:CDS | 25.0% |
| ! | TAGAGAAGTAAACAATCATA+AGG | + | chr2_2:1970039-1970058 | None:intergenic | 25.0% |
| !!! | AAAAGTGTCACTTTTCTCAA+TGG | - | chr2_2:1967115-1967134 | Msa0230110:three_prime_UTR | 30.0% |
| ! | TGTAATTATGTTTGAAGTCC+AGG | - | chr2_2:1967144-1967163 | Msa0230110:three_prime_UTR | 30.0% |
| ! | GTAATTATGTTTGAAGTCCA+GGG | - | chr2_2:1967145-1967164 | Msa0230110:three_prime_UTR | 30.0% |
| ! | TAATTATGTTTGAAGTCCAG+GGG | - | chr2_2:1967146-1967165 | Msa0230110:three_prime_UTR | 30.0% |
| TGTAGATGGAAGAAAAATCA+CGG | + | chr2_2:1967296-1967315 | None:intergenic | 30.0% | |
| GATTGATATTTGCAGCTTAT+TGG | - | chr2_2:1967644-1967663 | Msa0230110:CDS | 30.0% | |
| CAAATATGTAGCCATCTATT+AGG | + | chr2_2:1968132-1968151 | None:intergenic | 30.0% | |
| TAGATGGCTACATATTTGTT+TGG | - | chr2_2:1968134-1968153 | Msa0230110:intron | 30.0% | |
| TTTACTAACAAGACAAGAAG+TGG | + | chr2_2:1968342-1968361 | None:intergenic | 30.0% | |
| ACAAAAATAAGGCTATACCT+AGG | + | chr2_2:1968376-1968395 | None:intergenic | 30.0% | |
| AGAGAGAGCAAATAAAATCA+AGG | + | chr2_2:1968533-1968552 | None:intergenic | 30.0% | |
| !! | TTGATTTTATTTGCTCTCTC+TGG | - | chr2_2:1968532-1968551 | Msa0230110:intron | 30.0% |
| ACATTAATGAGACAAAGCTT+TGG | - | chr2_2:1968673-1968692 | Msa0230110:intron | 30.0% | |
| !! | ATGGTTGATGAAGTTACAAA+AGG | - | chr2_2:1968729-1968748 | Msa0230110:intron | 30.0% |
| ACAAAAGGAAATATGCCAAA+TGG | - | chr2_2:1968744-1968763 | Msa0230110:intron | 30.0% | |
| ACTCAACTTATACATCATTG+AGG | + | chr2_2:1968793-1968812 | None:intergenic | 30.0% | |
| !! | TTTAGTTGATCAGGTTGATA+CGG | + | chr2_2:1968831-1968850 | None:intergenic | 30.0% |
| GGAAAAATTATCTGAAGGTA+TGG | - | chr2_2:1968963-1968982 | Msa0230110:intron | 30.0% | |
| ATCATATCACCCATTAAAAG+TGG | + | chr2_2:1969004-1969023 | None:intergenic | 30.0% | |
| CAAGATTCATGATTCTAGAT+AGG | + | chr2_2:1969270-1969289 | None:intergenic | 30.0% | |
| TTATTTCCAGCAACTTGTAA+TGG | + | chr2_2:1969425-1969444 | None:intergenic | 30.0% | |
| TTCAACAAAAACAATGCAAC+TGG | - | chr2_2:1969447-1969466 | Msa0230110:intron | 30.0% | |
| GATGATCAATACATCAACAA+TGG | - | chr2_2:1969528-1969547 | Msa0230110:intron | 30.0% | |
| AATACATCAACAATGGGAAT+GGG | - | chr2_2:1969535-1969554 | Msa0230110:intron | 30.0% | |
| TAATCATGTGCATGTTGATA+AGG | - | chr2_2:1969563-1969582 | Msa0230110:intron | 30.0% | |
| TACATCACATCATATGAATG+AGG | - | chr2_2:1969671-1969690 | Msa0230110:intron | 30.0% | |
| !! | AAAAGCGTTGGAAAAGTTTA+AGG | - | chr2_2:1969851-1969870 | Msa0230110:CDS | 30.0% |
| ACTAGAACCTAAACAAATAC+AGG | + | chr2_2:1969956-1969975 | None:intergenic | 30.0% | |
| CTCGATAAGAGGAAAATAAA+AGG | + | chr2_2:1970125-1970144 | None:intergenic | 30.0% | |
| !!! | GTTAGTTTTTCTGCAGAATG+AGG | + | chr2_2:1967215-1967234 | None:intergenic | 35.0% |
| ATATTTGCAGCTTATTGGTC+TGG | - | chr2_2:1967649-1967668 | Msa0230110:CDS | 35.0% | |
| TTCAATATTCACACGGATAC+CGG | - | chr2_2:1967948-1967967 | Msa0230110:intron | 35.0% | |
| TGCACACAAGAACTAGAAAA+AGG | + | chr2_2:1968094-1968113 | None:intergenic | 35.0% | |
| TATGCTTGTTCCCTAATAGA+TGG | - | chr2_2:1968118-1968137 | Msa0230110:intron | 35.0% | |
| GTTTGAGCTCAATACTTCAA+AGG | + | chr2_2:1968277-1968296 | None:intergenic | 35.0% | |
| TTTACTTGTACAACCCAGTT+TGG | + | chr2_2:1968307-1968326 | None:intergenic | 35.0% | |
| GGTTGTACAAGTAAAGAACA+GGG | - | chr2_2:1968312-1968331 | Msa0230110:CDS | 35.0% | |
| GTTGTACAAGTAAAGAACAG+GGG | - | chr2_2:1968313-1968332 | Msa0230110:CDS | 35.0% | |
| ! | TCTTGTCTTGTTAGTAAAGC+TGG | - | chr2_2:1968344-1968363 | Msa0230110:CDS | 35.0% |
| CAAGACTTGGCACAAAAATA+AGG | + | chr2_2:1968387-1968406 | None:intergenic | 35.0% | |
| TATCTGTCAGATACAAGACT+TGG | + | chr2_2:1968400-1968419 | None:intergenic | 35.0% | |
| CTAGTATGAAACACACCATT+TGG | + | chr2_2:1968762-1968781 | None:intergenic | 35.0% | |
| GTGTGTTTCATACTAGAACA+TGG | - | chr2_2:1968766-1968785 | Msa0230110:intron | 35.0% | |
| ! | TTGATACGGTCGATTAGTTA+TGG | + | chr2_2:1968817-1968836 | None:intergenic | 35.0% |
| GTATCAACCTGATCAACTAA+AGG | - | chr2_2:1968830-1968849 | Msa0230110:intron | 35.0% | |
| ATCTTTGCCTTTAGTTGATC+AGG | + | chr2_2:1968840-1968859 | None:intergenic | 35.0% | |
| AACTAAAGGCAAAGATGCAT+AGG | - | chr2_2:1968844-1968863 | Msa0230110:intron | 35.0% | |
| TGAATAGAACTCACGATACA+TGG | + | chr2_2:1968877-1968896 | None:intergenic | 35.0% | |
| TATTCACTGAAGCATAACAC+CGG | - | chr2_2:1968891-1968910 | Msa0230110:intron | 35.0% | |
| TCATGCTTCTATTAGTGACA+TGG | - | chr2_2:1969049-1969068 | Msa0230110:intron | 35.0% | |
| TCACATTTCAATACCCTTGT+TGG | - | chr2_2:1969080-1969099 | Msa0230110:intron | 35.0% | |
| !!! | TTTTGAAACTGTGCAGCTTT+GGG | + | chr2_2:1969390-1969409 | None:intergenic | 35.0% |
| CTGCACAGTTTCAAAAGAAA+GGG | - | chr2_2:1969394-1969413 | Msa0230110:intron | 35.0% | |
| CAATACATCAACAATGGGAA+TGG | - | chr2_2:1969534-1969553 | Msa0230110:intron | 35.0% | |
| TTTCTTTGGTAAGAGCTGAT+AGG | - | chr2_2:1969715-1969734 | Msa0230110:intron | 35.0% | |
| TAAGAGCTGATAGGTTAAGA+AGG | - | chr2_2:1969724-1969743 | Msa0230110:intron | 35.0% | |
| AAGAGCTGATAGGTTAAGAA+GGG | - | chr2_2:1969725-1969744 | Msa0230110:intron | 35.0% | |
| GACATTTCAGATGATTCCTA+TGG | - | chr2_2:1969828-1969847 | Msa0230110:CDS | 35.0% | |
| AGTTTAAGGATTCTGATTGG+AGG | - | chr2_2:1969865-1969884 | Msa0230110:CDS | 35.0% | |
| GTTTAAGGATTCTGATTGGA+GGG | - | chr2_2:1969866-1969885 | Msa0230110:CDS | 35.0% | |
| AAAACACGATACTCGATAAG+AGG | + | chr2_2:1970136-1970155 | None:intergenic | 35.0% | |
| AGAACACTGAGAAGCGAAAA+TGG | - | chr2_2:1967238-1967257 | Msa0230110:three_prime_UTR | 40.0% | |
| AGAAAAATCACGGCGAAGAT+CGG | + | chr2_2:1967286-1967305 | None:intergenic | 40.0% | |
| AAGAAGAAGCAAGGTGTAGA+TGG | + | chr2_2:1967310-1967329 | None:intergenic | 40.0% | |
| !!! | TTCTTCTCTGCGGTTTTTTC+AGG | - | chr2_2:1967360-1967379 | Msa0230110:CDS | 40.0% |
| TCAAACAGCTTAGCCAAACT+GGG | - | chr2_2:1968291-1968310 | Msa0230110:CDS | 40.0% | |
| GGGTTGTACAAGTAAAGAAC+AGG | - | chr2_2:1968311-1968330 | Msa0230110:CDS | 40.0% | |
| !!! | CTCTCTGGTGCTACTTTTAT+AGG | - | chr2_2:1968547-1968566 | Msa0230110:intron | 40.0% |
| GTTACTGCAACTGAAGAATC+TGG | - | chr2_2:1968942-1968961 | Msa0230110:intron | 40.0% | |
| TTGGCGCAATGAACAAAACT+GGG | + | chr2_2:1969176-1969195 | None:intergenic | 40.0% | |
| TTTGGCGCAATGAACAAAAC+TGG | + | chr2_2:1969177-1969196 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAACTGTGCAGCTT+TGG | + | chr2_2:1969391-1969410 | None:intergenic | 40.0% |
| GCTGCACAGTTTCAAAAGAA+AGG | - | chr2_2:1969393-1969412 | Msa0230110:intron | 40.0% | |
| TTTCGTCATCTGTGTTTGGT+GGG | + | chr2_2:1969500-1969519 | None:intergenic | 40.0% | |
| ! | TTTTCGTCATCTGTGTTTGG+TGG | + | chr2_2:1969501-1969520 | None:intergenic | 40.0% |
| ! | TCGTTTTCGTCATCTGTGTT+TGG | + | chr2_2:1969504-1969523 | None:intergenic | 40.0% |
| ATGTGATGTAGACTCCTTCT+TGG | + | chr2_2:1969661-1969680 | None:intergenic | 40.0% | |
| CTGATAGGTTAAGAAGGGAT+AGG | - | chr2_2:1969730-1969749 | Msa0230110:intron | 40.0% | |
| TTGTTCTCTTACCAAGTGTG+TGG | - | chr2_2:1969785-1969804 | Msa0230110:intron | 40.0% | |
| ! | TGATTCCTATGGAAAAGCGT+TGG | - | chr2_2:1969839-1969858 | Msa0230110:CDS | 40.0% |
| ! | CTTTTCCAACGCTTTTCCAT+AGG | + | chr2_2:1969847-1969866 | None:intergenic | 40.0% |
| AGCGAAAATGGCGATTTCGA+CGG | - | chr2_2:1967250-1967269 | Msa0230110:exon | 45.0% | |
| !! | CCGTTGACGAGTTTTGTATC+CGG | + | chr2_2:1967970-1967989 | None:intergenic | 45.0% |
| CCGGATACAAAACTCGTCAA+CGG | - | chr2_2:1967967-1967986 | Msa0230110:intron | 45.0% | |
| CTCAAACAGCTTAGCCAAAC+TGG | - | chr2_2:1968290-1968309 | Msa0230110:CDS | 45.0% | |
| AGTAAAGCTGGACTGAACCT+AGG | - | chr2_2:1968356-1968375 | Msa0230110:CDS | 45.0% | |
| CTGAAGCATAACACCGGATT+TGG | - | chr2_2:1968897-1968916 | Msa0230110:intron | 45.0% | |
| TTCAGCATTCCAGCCAAATC+CGG | + | chr2_2:1968913-1968932 | None:intergenic | 45.0% | |
| GTGTGACCATTACAAGTTGC+TGG | - | chr2_2:1969416-1969435 | Msa0230110:intron | 45.0% | |
| ! | ATCTGTGTTTGGTGGGTCTT+GGG | + | chr2_2:1969493-1969512 | None:intergenic | 45.0% |
| GGTTCATGTGAGATCCAAGA+AGG | - | chr2_2:1969644-1969663 | Msa0230110:intron | 45.0% | |
| AGCATGGGCTCAAGTTTCTT+TGG | - | chr2_2:1969701-1969720 | Msa0230110:intron | 45.0% | |
| TTATCGCCATGCGTAATGAG+AGG | - | chr2_2:1969895-1969914 | Msa0230110:CDS | 45.0% | |
| ! | TAATGAGAGGAAGCGTGGAT+GGG | - | chr2_2:1969908-1969927 | Msa0230110:CDS | 45.0% |
| !!! | ATTTTTTTATCAAAAAAATT+TGG | - | chr2_2:1967176-1967195 | Msa0230110:three_prime_UTR | 5.0% |
| ACCGTGCTTCTTCTTCTCTG+CGG | - | chr2_2:1967350-1967369 | Msa0230110:CDS | 50.0% | |
| ACCGCAGAGAAGAAGAAGCA+CGG | + | chr2_2:1967354-1967373 | None:intergenic | 50.0% | |
| AGCATAACACCGGATTTGGC+TGG | - | chr2_2:1968901-1968920 | Msa0230110:intron | 50.0% | |
| ! | CATCTGTGTTTGGTGGGTCT+TGG | + | chr2_2:1969494-1969513 | None:intergenic | 50.0% |
| ! | TGAATGAGGCACTTGCAGCA+TGG | - | chr2_2:1969685-1969704 | Msa0230110:intron | 50.0% |
| ! | GAATGAGGCACTTGCAGCAT+GGG | - | chr2_2:1969686-1969705 | Msa0230110:intron | 50.0% |
| ! | AAGAAGGGATAGGAGTGCAG+AGG | - | chr2_2:1969740-1969759 | Msa0230110:intron | 50.0% |
| ACGCTTCCTCTCATTACGCA+TGG | + | chr2_2:1969904-1969923 | None:intergenic | 50.0% | |
| ATGCGTAATGAGAGGAAGCG+TGG | - | chr2_2:1969903-1969922 | Msa0230110:CDS | 50.0% | |
| ! | GTAATGAGAGGAAGCGTGGA+TGG | - | chr2_2:1969907-1969926 | Msa0230110:CDS | 50.0% |
| GGATGGGTACTTAGGCTCTA+AGG | - | chr2_2:1969924-1969943 | Msa0230110:CDS | 50.0% | |
| GCGGTGGAGAAGAAGAAGCA+AGG | + | chr2_2:1967319-1967338 | None:intergenic | 55.0% | |
| AGCACGGTAGAGAAGAAGCG+CGG | + | chr2_2:1967338-1967357 | None:intergenic | 55.0% | |
| CACTCGCAGTGAAAAGCGAC+AGG | - | chr2_2:1969623-1969642 | Msa0230110:intron | 55.0% | |
| ATCGAGAGCAGCCACACACT+TGG | + | chr2_2:1969799-1969818 | None:intergenic | 55.0% | |
| AAGTGTGTGGCTGCTCTCGA+TGG | - | chr2_2:1969798-1969817 | Msa0230110:intron | 55.0% | |
| AGTGTGTGGCTGCTCTCGAT+GGG | - | chr2_2:1969799-1969818 | Msa0230110:intron | 55.0% | |
| ! | GGAAGCGTGGATGGGTACTT+AGG | - | chr2_2:1969916-1969935 | Msa0230110:CDS | 55.0% |
| ! | ACGGTAGAGAAGAAGCGCGG+TGG | + | chr2_2:1967335-1967354 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 1967021 | 1970181 | 1967021 | ID=Msa0230110;Name=Msa0230110 |
| chr2_2 | mRNA | 1967021 | 1970181 | 1967021 | ID=Msa0230110-mRNA-1;Parent=Msa0230110;Name=Msa0230110-mRNA-1;_AED=0.24;_eAED=0.24;_QI=130|0.5|0.66|1|1|1|3|237|359 |
| chr2_2 | exon | 1967021 | 1967821 | 1967021 | ID=Msa0230110-mRNA-1:exon:774;Parent=Msa0230110-mRNA-1 |
| chr2_2 | exon | 1968261 | 1968545 | 1968261 | ID=Msa0230110-mRNA-1:exon:773;Parent=Msa0230110-mRNA-1 |
| chr2_2 | exon | 1969821 | 1970181 | 1969821 | ID=Msa0230110-mRNA-1:exon:772;Parent=Msa0230110-mRNA-1 |
| chr2_2 | five_prime_UTR | 1970052 | 1970181 | 1970052 | ID=Msa0230110-mRNA-1:five_prime_utr;Parent=Msa0230110-mRNA-1 |
| chr2_2 | CDS | 1969821 | 1970051 | 1969821 | ID=Msa0230110-mRNA-1:cds;Parent=Msa0230110-mRNA-1 |
| chr2_2 | CDS | 1968261 | 1968545 | 1968261 | ID=Msa0230110-mRNA-1:cds;Parent=Msa0230110-mRNA-1 |
| chr2_2 | CDS | 1967258 | 1967821 | 1967258 | ID=Msa0230110-mRNA-1:cds;Parent=Msa0230110-mRNA-1 |
| chr2_2 | three_prime_UTR | 1967021 | 1967257 | 1967021 | ID=Msa0230110-mRNA-1:three_prime_utr;Parent=Msa0230110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
