AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465180 MtrunA17_Chr3g0130731 99.315 146 1 0 1 146 1 146 8.61e-108 309
Msa1465180 MtrunA17_Chr8g0384721 84.354 147 22 1 1 146 1 147 1.06e-91 268
Msa1465180 MtrunA17_Chr3g0124761 80.822 146 28 0 1 146 1 146 1.47e-87 258
Msa1465180 MtrunA17_Chr2g0318081 68.841 138 42 1 3 139 12 149 1.78e-66 206
Msa1465180 MtrunA17_Chr8g0359921 69.718 142 38 2 4 144 11 148 6.89e-66 204
Msa1465180 MtrunA17_Chr2g0318101 64.474 152 43 3 6 146 14 165 2.06e-65 203
Msa1465180 MtrunA17_Chr4g0047841 72.868 129 30 2 7 131 15 142 1.65e-63 198
Msa1465180 MtrunA17_Chr5g0417791 61.594 138 52 1 5 141 1 138 7.33e-61 189
Msa1465180 MtrunA17_Chr4g0042561 62.500 136 50 1 6 140 8 143 1.55e-60 188
Msa1465180 MtrunA17_Chr7g0252971 61.538 143 45 1 4 136 5 147 2.94e-60 190
Msa1465180 MtrunA17_Chr2g0326361 62.222 135 46 2 7 138 14 146 6.42e-58 183
Msa1465180 MtrunA17_Chr7g0263931 61.654 133 48 1 2 131 6 138 1.03e-57 183
Msa1465180 MtrunA17_Chr6g0481091 54.054 148 63 3 7 149 6 153 1.12e-55 175
Msa1465180 MtrunA17_Chr2g0309891 61.538 130 47 2 5 131 4 133 2.28e-55 177
Msa1465180 MtrunA17_Chr5g0405211 53.103 145 64 2 7 147 8 152 6.44e-53 171
Msa1465180 MtrunA17_Chr4g0076731 55.245 143 62 1 9 149 56 198 8.37e-53 173
Msa1465180 MtrunA17_Chr6g0453131 57.463 134 55 1 6 137 14 147 9.19e-53 172
Msa1465180 MtrunA17_Chr5g0417001 58.140 129 51 1 9 134 16 144 1.05e-52 172
Msa1465180 MtrunA17_Chr5g0400461 53.503 157 62 3 3 149 2 157 1.85e-52 169
Msa1465180 MtrunA17_Chr4g0018391 53.061 147 65 2 7 149 7 153 3.82e-52 169
Msa1465180 MtrunA17_Chr6g0484441 57.047 149 59 2 4 149 2 148 1.04e-51 167
Msa1465180 MtrunA17_Chr8g0372121 52.414 145 65 2 7 147 6 150 1.69e-51 166
Msa1465180 MtrunA17_Chr8g0361731 55.474 137 57 2 9 141 16 152 1.79e-51 169
Msa1465180 MtrunA17_Chr4g0060931 60.465 129 50 1 4 131 14 142 2.00e-51 167
Msa1465180 MtrunA17_Chr5g0433781 60.769 130 48 2 5 131 4 133 2.73e-51 173
Msa1465180 MtrunA17_Chr6g0453451 59.091 132 53 1 4 134 17 148 2.92e-51 166
Msa1465180 MtrunA17_Chr2g0309331 51.316 152 69 2 3 149 6 157 6.64e-51 166
Msa1465180 MtrunA17_Chr5g0398971 52.349 149 65 3 7 149 7 155 1.31e-50 165
Msa1465180 MtrunA17_Chr3g0109821 60.769 130 48 2 5 131 4 133 2.11e-50 171
Msa1465180 MtrunA17_Chr4g0056541 51.701 147 67 2 7 149 7 153 4.80e-50 164
Msa1465180 MtrunA17_Chr2g0316971 58.779 131 51 1 4 131 20 150 7.00e-50 164
Msa1465180 MtrunA17_Chr3g0091921 52.174 161 68 3 2 155 11 169 1.54e-49 161
Msa1465180 MtrunA17_Chr1g0200561 50.331 151 71 2 1 147 13 163 5.18e-49 161
Msa1465180 MtrunA17_Chr4g0017921 57.252 131 52 2 7 133 8 138 3.02e-48 159
Msa1465180 MtrunA17_Chr6g0461661 56.154 130 54 1 5 131 16 145 7.48e-48 159
Msa1465180 MtrunA17_Chr4g0054791 55.396 139 55 3 1 133 1 138 1.45e-47 157
Msa1465180 MtrunA17_Chr7g0217711 52.055 146 65 3 1 144 12 154 1.88e-47 152
Msa1465180 MtrunA17_Chr7g0253011 56.818 132 52 1 5 131 15 146 2.70e-47 157
Msa1465180 MtrunA17_Chr7g0214071 52.980 151 65 2 2 149 10 157 4.01e-47 154
Msa1465180 MtrunA17_Chr3g0139331 48.993 149 73 1 4 149 8 156 6.07e-47 155
Msa1465180 MtrunA17_Chr7g0217721 54.887 133 58 2 1 131 12 144 7.35e-47 155
Msa1465180 MtrunA17_Chr5g0442771 52.703 148 60 3 9 152 20 161 1.10e-46 154
Msa1465180 MtrunA17_Chr1g0147421 54.478 134 57 2 2 131 22 155 4.67e-46 154
Msa1465180 MtrunA17_Chr1g0183741 55.039 129 53 2 7 131 10 137 9.31e-46 150
Msa1465180 MtrunA17_Chr8g0346001 51.111 135 62 2 1 131 9 143 1.45e-45 154
Msa1465180 MtrunA17_Chr3g0144271 55.970 134 55 2 2 131 18 151 2.16e-45 154
Msa1465180 MtrunA17_Chr5g0428991 54.110 146 62 3 7 147 25 170 2.18e-45 157
Msa1465180 MtrunA17_Chr7g0261411 55.039 129 53 2 7 131 10 137 5.06e-45 149
Msa1465180 MtrunA17_Chr2g0311651 52.448 143 60 4 1 135 15 157 6.55e-45 149
Msa1465180 MtrunA17_Chr2g0311661 54.478 134 54 3 9 135 23 156 2.01e-44 148
Msa1465180 MtrunA17_Chr1g0201021 50.704 142 59 3 9 147 21 154 8.79e-44 152
Msa1465180 MtrunA17_Chr3g0128151 50.340 147 66 4 7 147 22 167 2.79e-43 150
Msa1465180 MtrunA17_Chr2g0312321 55.814 129 54 3 4 131 8 134 4.62e-42 142
Msa1465180 MtrunA17_Chr1g0197351 54.762 126 54 2 7 129 42 167 1.44e-41 144
Msa1465180 MtrunA17_Chr3g0128111 50.400 125 57 3 10 130 45 168 1.53e-41 139
Msa1465180 MtrunA17_Chr4g0038751 48.062 129 63 1 9 133 17 145 1.20e-40 138
Msa1465180 MtrunA17_Chr8g0385991 48.980 147 66 4 2 143 9 151 4.06e-40 135
Msa1465180 MtrunA17_Chr3g0130101 47.260 146 72 3 9 149 9 154 4.67e-40 138
Msa1465180 MtrunA17_Chr8g0345671 54.135 133 54 4 6 132 10 141 3.18e-39 137
Msa1465180 MtrunA17_Chr8g0364791 48.120 133 66 2 6 135 5 137 1.02e-38 136
Msa1465180 MtrunA17_Chr3g0131911 48.592 142 66 2 2 138 9 148 2.31e-38 130
Msa1465180 MtrunA17_Chr1g0197361 44.521 146 76 4 9 149 10 155 1.19e-36 132
Msa1465180 MtrunA17_Chr3g0092671 45.638 149 70 5 9 149 7 152 2.49e-36 131
Msa1465180 MtrunA17_Chr8g0384201 45.865 133 69 2 6 135 5 137 4.85e-36 130
Msa1465180 MtrunA17_Chr8g0345691 48.062 129 60 4 7 129 12 139 3.30e-33 121
Msa1465180 MtrunA17_Chr2g0321741 47.287 129 61 4 27 153 12 135 4.31e-33 120
Msa1465180 MtrunA17_Chr4g0026141 43.165 139 72 3 7 138 5 143 7.30e-33 117
Msa1465180 MtrunA17_Chr8g0345711 46.512 129 62 4 7 129 12 139 4.54e-32 112
Msa1465180 MtrunA17_Chr2g0321631 41.818 165 81 6 8 157 5 169 1.30e-31 114
Msa1465180 MtrunA17_Chr4g0050701 44.531 128 60 2 7 131 11 130 2.51e-31 111
Msa1465180 MtrunA17_Chr7g0266701 37.589 141 80 3 7 139 4 144 6.68e-31 112
Msa1465180 MtrunA17_Chr8g0345731 46.269 134 64 4 7 132 24 157 7.32e-31 109
Msa1465180 MtrunA17_Chr8g0345721 38.037 163 65 4 10 137 38 199 3.75e-28 103
Msa1465180 MtrunA17_Chr3g0113001 61.538 78 29 1 55 131 13 90 9.36e-28 105
Msa1465180 MtrunA17_Chr8g0345701 39.597 149 67 6 1 129 1 146 6.66e-26 97.1
Msa1465180 MtrunA17_Chr7g0243371 57.333 75 29 1 60 131 17 91 6.77e-24 90.5
Msa1465180 MtrunA17_Chr8g0345741 41.935 124 65 4 18 135 2 124 1.37e-23 90.5
Msa1465180 MtrunA17_Chr8g0384351 40.152 132 64 4 2 133 5 121 1.45e-23 91.3
Msa1465180 MtrunA17_Chr3g0113031 63.492 63 22 1 70 131 3 65 1.41e-21 88.2
Msa1465180 MtrunA17_Chr7g0251661 30.405 148 96 4 3 146 6 150 7.99e-20 80.9
Msa1465180 MtrunA17_Chr7g0251651 32.836 134 83 4 5 134 16 146 2.82e-19 80.5
Msa1465180 MtrunA17_Chr7g0251671 31.111 135 86 4 4 134 7 138 1.52e-17 75.1
Msa1465180 MtrunA17_Chr3g0130321 30.657 137 86 3 1 134 1 131 1.37e-16 73.6
Msa1465180 MtrunA17_Chr3g0113011 50.000 54 26 1 1 53 12 65 2.94e-13 61.6
Msa1465180 MtrunA17_Chr3g0113041 46.296 54 28 1 1 53 12 65 3.99e-11 56.2
Msa1465180 MtrunA17_Chr2g0324961 33.333 144 74 7 7 131 49 189 5.09e-11 59.7
Msa1465180 MtrunA17_Chr8g0389661 31.818 154 76 7 5 132 45 195 7.64e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465180 AT5G08790.1 81.081 148 26 1 1 146 1 148 7.95e-88 258
Msa1465180 AT5G63790.1 79.730 148 28 1 1 146 44 191 8.27e-86 254
Msa1465180 AT5G63790.2 79.730 148 28 1 1 146 54 201 1.25e-85 254
Msa1465180 AT1G01720.1 79.592 147 29 1 1 146 1 147 9.69e-85 251
Msa1465180 AT1G77450.1 75.694 144 35 0 3 146 6 149 2.42e-82 243
Msa1465180 AT4G27410.2 65.385 156 51 2 4 156 11 166 3.74e-67 206
Msa1465180 AT3G15500.1 65.772 149 48 2 4 149 11 159 1.19e-65 203
Msa1465180 AT1G52890.1 65.772 149 48 2 4 149 11 159 2.49e-65 202
Msa1465180 AT4G27410.3 58.960 173 51 3 4 156 11 183 1.31e-62 195
Msa1465180 AT1G61110.1 60.645 155 50 2 3 146 12 166 1.52e-61 193
Msa1465180 AT3G04070.2 58.333 168 52 4 7 156 10 177 8.06e-61 192
Msa1465180 AT3G04070.1 62.252 151 43 2 7 143 10 160 3.95e-60 190
Msa1465180 AT1G69490.1 62.774 137 50 1 7 142 9 145 2.10e-59 186
Msa1465180 AT3G15510.1 64.189 148 40 4 11 146 21 167 3.05e-58 186
Msa1465180 AT2G02450.1 55.944 143 61 1 9 149 53 195 1.48e-54 177
Msa1465180 AT2G02450.2 55.944 143 61 1 9 149 53 195 2.41e-54 177
Msa1465180 AT5G61430.1 56.129 155 59 3 2 149 11 163 4.54e-54 174
Msa1465180 AT1G52880.1 62.329 146 45 2 11 146 21 166 4.72e-54 174
Msa1465180 AT3G17730.1 53.378 148 64 3 7 149 6 153 1.37e-53 170
Msa1465180 AT5G39820.1 58.333 132 52 1 9 137 22 153 2.02e-53 172
Msa1465180 AT3G29035.1 56.410 156 59 3 4 152 21 174 4.88e-53 171
Msa1465180 AT5G07680.1 55.414 157 61 3 4 153 14 168 8.30e-53 171
Msa1465180 AT5G07680.2 55.769 156 60 3 5 153 1 154 1.43e-52 170
Msa1465180 AT5G39610.1 57.237 152 56 3 5 149 18 167 3.12e-52 168
Msa1465180 AT3G18400.1 61.240 129 49 1 4 131 2 130 4.78e-52 168
Msa1465180 AT4G36160.1 53.103 145 64 2 7 147 10 154 5.39e-52 170
Msa1465180 AT4G36160.3 53.103 145 64 2 7 147 10 154 5.39e-52 170
Msa1465180 AT4G36160.2 53.103 145 64 2 7 147 14 158 5.54e-52 170
Msa1465180 AT2G18060.3 52.414 145 65 2 7 147 9 153 5.91e-52 169
Msa1465180 AT2G18060.1 52.414 145 65 2 7 147 9 153 5.91e-52 169
Msa1465180 AT5G46590.2 55.000 140 59 2 7 142 6 145 7.75e-52 167
Msa1465180 AT5G46590.1 55.000 140 59 2 7 142 6 145 1.08e-51 167
Msa1465180 AT1G26870.1 59.055 127 49 1 7 130 16 142 1.25e-51 170
Msa1465180 AT4G17980.1 53.378 148 64 2 3 145 2 149 1.90e-51 165
Msa1465180 AT4G17980.2 53.378 148 64 2 3 145 2 149 2.65e-51 166
Msa1465180 AT3G03200.1 52.980 151 65 3 5 149 4 154 3.52e-51 170
Msa1465180 AT5G17260.1 58.462 130 51 2 5 131 4 133 3.62e-51 170
Msa1465180 AT5G62380.2 52.318 151 68 2 1 147 1 151 3.67e-51 167
Msa1465180 AT5G62380.1 52.318 151 68 2 1 147 1 151 3.67e-51 167
Msa1465180 AT2G33480.2 55.705 149 62 2 2 149 10 155 5.27e-51 164
Msa1465180 AT2G33480.1 55.629 151 61 3 2 149 10 157 6.49e-51 164
Msa1465180 AT1G54330.1 57.447 141 57 2 5 142 4 144 9.27e-51 165
Msa1465180 AT5G53950.1 62.500 128 45 1 7 131 17 144 1.38e-50 166
Msa1465180 AT1G12260.2 50.340 147 69 2 7 149 7 153 3.38e-50 164
Msa1465180 AT2G43000.1 54.348 138 61 2 2 137 12 149 8.42e-50 161
Msa1465180 AT1G12260.1 50.340 147 69 2 7 149 7 153 1.11e-49 164
Msa1465180 AT2G24430.2 53.333 150 66 2 4 149 13 162 1.34e-49 162
Msa1465180 AT2G24430.1 53.333 150 66 2 4 149 13 162 1.34e-49 162
Msa1465180 AT3G15170.1 55.970 134 56 1 1 131 14 147 1.58e-49 162
Msa1465180 AT1G76420.1 57.037 135 55 1 2 133 17 151 1.68e-49 162
Msa1465180 AT1G65910.1 53.333 150 65 3 5 149 4 153 2.12e-49 168
Msa1465180 AT1G62700.1 50.676 148 69 2 6 149 6 153 2.58e-49 163
Msa1465180 AT1G62700.2 50.676 148 69 2 6 149 6 153 2.58e-49 163
Msa1465180 AT5G66300.1 57.480 127 50 2 7 129 12 138 3.78e-49 160
Msa1465180 AT1G71930.2 50.345 145 68 2 7 147 9 153 5.03e-49 161
Msa1465180 AT1G71930.1 50.345 145 68 2 7 147 9 153 5.03e-49 161
Msa1465180 AT3G04060.1 52.532 158 65 3 2 151 15 170 8.33e-49 160
Msa1465180 AT4G10350.1 57.143 133 53 2 7 135 9 141 8.66e-49 160
Msa1465180 AT1G32510.1 53.425 146 58 2 7 142 6 151 2.70e-48 158
Msa1465180 AT5G18270.1 53.548 155 62 3 5 151 19 171 5.97e-48 158
Msa1465180 AT1G79580.3 50.658 152 69 3 3 149 13 163 7.86e-48 159
Msa1465180 AT1G79580.5 50.658 152 69 3 3 149 13 163 7.86e-48 159
Msa1465180 AT1G79580.4 50.658 152 69 3 3 149 13 163 7.86e-48 159
Msa1465180 AT1G79580.2 50.658 152 69 3 3 149 13 163 7.86e-48 159
Msa1465180 AT1G79580.1 50.658 152 69 3 3 149 13 163 7.86e-48 159
Msa1465180 AT5G18270.2 53.548 155 62 3 5 151 19 171 8.42e-48 158
Msa1465180 AT1G33280.1 55.639 133 55 2 7 135 8 140 1.74e-47 156
Msa1465180 AT4G35580.3 53.333 150 65 3 7 151 9 158 1.82e-47 161
Msa1465180 AT4G35580.2 53.333 150 65 3 7 151 9 158 2.01e-47 161
Msa1465180 AT4G35580.1 53.333 150 65 3 7 151 9 158 2.06e-47 161
Msa1465180 AT1G32770.1 50.350 143 67 2 1 139 10 152 4.03e-47 157
Msa1465180 AT5G24590.2 52.381 147 64 3 7 147 13 159 1.66e-46 157
Msa1465180 AT5G13180.1 57.143 133 51 2 2 131 9 138 2.31e-46 152
Msa1465180 AT1G33060.2 51.333 150 68 3 7 151 24 173 5.59e-46 159
Msa1465180 AT3G10490.1 50.327 153 66 4 7 151 27 177 5.64e-46 150
Msa1465180 AT1G33060.1 51.333 150 68 3 7 151 24 173 6.04e-46 159
Msa1465180 AT2G46770.1 51.111 135 62 2 1 131 10 144 1.00e-45 153
Msa1465180 AT3G49530.2 52.593 135 60 2 7 137 13 147 3.43e-45 153
Msa1465180 AT3G49530.1 52.593 135 60 2 7 137 13 147 4.90e-45 154
Msa1465180 AT3G10480.1 54.688 128 55 2 7 131 27 154 1.00e-44 152
Msa1465180 AT3G10480.2 54.688 128 55 2 7 131 27 154 1.10e-44 152
Msa1465180 AT3G10490.2 52.482 141 62 3 7 144 27 165 4.90e-44 151
Msa1465180 AT3G61910.1 49.630 135 64 2 1 131 5 139 6.04e-44 148
Msa1465180 AT1G56010.2 54.615 130 57 2 4 131 16 145 1.50e-43 147
Msa1465180 AT3G12977.1 53.846 130 57 3 4 131 15 143 3.03e-43 145
Msa1465180 AT2G17040.1 49.635 137 64 2 1 133 1 136 7.66e-43 144
Msa1465180 AT3G12910.1 54.887 133 53 4 9 135 23 154 2.57e-42 143
Msa1465180 AT4G28530.1 50.000 146 52 3 6 131 9 153 3.06e-42 144
Msa1465180 AT3G10500.1 46.622 148 74 3 7 149 9 156 5.21e-41 144
Msa1465180 AT1G34190.1 52.381 126 57 2 9 131 18 143 6.10e-41 144
Msa1465180 AT1G34180.3 51.587 126 58 2 9 131 18 143 7.05e-41 142
Msa1465180 AT2G27300.1 52.800 125 57 2 7 129 14 138 7.33e-41 140
Msa1465180 AT3G10480.3 44.720 161 53 2 7 131 27 187 9.05e-41 143
Msa1465180 AT5G04410.1 50.758 132 62 2 7 135 9 140 1.75e-40 143
Msa1465180 AT1G34180.1 51.587 126 58 2 9 131 18 143 2.12e-40 143
Msa1465180 AT5G09330.5 48.507 134 66 2 3 133 2 135 1.98e-39 139
Msa1465180 AT5G09330.2 48.507 134 66 2 3 133 2 135 1.98e-39 139
Msa1465180 AT5G09330.4 48.507 134 66 2 3 133 2 135 1.98e-39 139
Msa1465180 AT5G09330.3 48.507 134 66 2 3 133 2 135 1.98e-39 139
Msa1465180 AT5G09330.1 48.507 134 66 2 3 133 2 135 1.98e-39 139
Msa1465180 AT1G34180.4 47.101 138 58 2 9 131 18 155 3.94e-39 138
Msa1465180 AT1G34180.2 47.101 138 58 2 9 131 18 155 1.09e-38 138
Msa1465180 AT3G44290.2 44.218 147 75 3 9 153 16 157 1.73e-38 131
Msa1465180 AT3G44290.1 44.218 147 75 3 9 153 16 157 7.95e-38 132
Msa1465180 AT5G22290.1 47.656 128 65 2 9 134 23 150 1.09e-37 132
Msa1465180 AT5G64060.1 44.755 143 74 3 3 142 2 142 1.16e-37 132
Msa1465180 AT1G32870.2 54.688 128 53 3 7 131 10 135 1.86e-37 134
Msa1465180 AT1G32870.1 54.688 128 53 3 7 131 10 135 2.26e-37 134
Msa1465180 AT1G32870.3 54.688 128 53 3 7 131 46 171 2.91e-37 134
Msa1465180 AT5G04395.1 41.333 150 69 3 4 135 25 173 7.59e-35 120
Msa1465180 AT5G22380.1 40.361 166 87 4 6 159 4 169 3.38e-31 112
Msa1465180 AT3G44350.1 40.909 132 71 3 6 130 4 135 4.10e-30 107
Msa1465180 AT2G33480.3 56.989 93 37 2 60 149 8 100 4.27e-30 109
Msa1465180 AT5G61430.2 56.863 102 35 3 55 149 1 100 6.91e-30 110
Msa1465180 AT3G44350.2 36.585 164 94 4 6 159 4 167 1.68e-29 108
Msa1465180 AT5G64530.2 42.424 132 61 3 5 133 1 120 1.73e-29 106
Msa1465180 AT5G64530.1 42.424 132 61 3 5 133 1 120 5.53e-29 105
Msa1465180 AT4G28530.2 50.459 109 36 2 6 97 9 116 6.74e-29 108
Msa1465180 AT4G10350.2 59.036 83 33 1 54 135 12 94 3.02e-28 106
Msa1465180 AT4G01550.1 42.308 130 68 3 10 132 7 136 3.83e-28 108
Msa1465180 AT4G01520.1 41.353 133 70 4 8 132 5 137 1.04e-27 105
Msa1465180 AT4G01540.2 43.511 131 66 5 10 132 7 137 2.19e-26 103
Msa1465180 AT4G01540.3 41.985 131 68 4 10 132 7 137 2.29e-26 103
Msa1465180 AT4G01540.4 41.985 131 68 4 10 132 7 137 2.48e-26 103
Msa1465180 AT4G01540.1 43.511 131 66 5 10 132 7 137 2.91e-26 103
Msa1465180 AT3G04420.2 43.077 130 69 3 5 129 1 130 4.38e-26 100
Msa1465180 AT3G04420.1 43.077 130 69 3 5 129 1 130 8.11e-26 100
Msa1465180 AT1G56010.1 61.111 72 27 1 61 131 7 78 1.47e-25 98.6
Msa1465180 AT3G12977.2 58.333 72 29 1 61 131 19 90 1.94e-25 97.8
Msa1465180 AT1G02230.1 39.259 135 71 4 8 134 4 135 1.08e-24 98.2
Msa1465180 AT1G02250.1 40.769 130 66 4 8 129 4 130 2.09e-21 89.4
Msa1465180 AT5G14000.2 34.228 149 93 3 1 146 9 155 2.41e-21 85.1
Msa1465180 AT1G02220.1 39.231 130 71 4 5 129 1 127 2.52e-21 89.4
Msa1465180 AT2G43000.2 55.714 70 30 1 69 137 2 71 8.47e-21 84.7
Msa1465180 AT5G14000.1 36.296 135 81 3 1 132 9 141 2.76e-20 84.0
Msa1465180 AT1G01010.1 36.957 138 72 5 5 129 1 136 9.52e-19 82.4
Msa1465180 AT3G56530.1 32.450 151 96 4 4 149 49 198 3.12e-18 80.1
Msa1465180 AT3G10490.4 53.030 66 28 2 80 144 2 65 5.03e-16 74.3
Msa1465180 AT3G10490.3 53.030 66 28 2 80 144 2 65 5.03e-16 74.3
Msa1465180 AT5G50820.1 34.559 136 68 5 5 131 15 138 1.65e-15 70.9
Msa1465180 AT3G55210.1 32.051 156 85 6 7 144 11 163 3.10e-14 68.9
Msa1465180 AT2G18060.2 48.438 64 32 1 85 147 2 65 4.75e-14 68.2
Msa1465180 AT3G04430.1 34.848 132 71 5 13 130 6 136 8.94e-14 66.2
Msa1465180 AT4G29230.3 31.373 153 75 6 7 132 48 197 1.91e-11 61.6
Msa1465180 AT4G29230.1 31.373 153 75 6 7 132 48 197 2.23e-11 61.6
Msa1465180 AT4G29230.2 31.373 153 75 6 7 132 47 196 2.34e-11 61.2

Find 37 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAGGAGTTAAAACTAAT+TGG 0.189428 tig0044999:+5815 Msa1465180:CDS
GAGCTGCTGGAAGTGGTTAT+TGG 0.288932 tig0044999:+5707 Msa1465180:CDS
AATACCATTCTTTCTCACTA+TGG 0.343467 tig0044999:-5636 Msa1465180:intergenic
CGATTTGGCCGCGAACCATT+AGG 0.350658 tig0044999:-5685 Msa1465180:intergenic
TTTGATCCATGGCAGCTTCC+AGG 0.350717 tig0044999:+5508 Msa1465180:CDS
CCACTTCCAGCAGCTCGATT+TGG 0.370452 tig0044999:-5700 Msa1465180:intergenic
GAAGCCGATGGGGATTAAAA+AGG 0.375581 tig0044999:+5765 Msa1465180:CDS
ATCGGCTTCAATTTCCCAAT+TGG 0.383323 tig0044999:-5751 Msa1465180:intergenic
TCACCCCACTGATGAAGAAT+TGG 0.389683 tig0044999:+5408 Msa1465180:CDS
AAACAACTTGAGGGTATGTT+TGG 0.389978 tig0044999:+5888 Msa1465180:CDS
AAATCAACTTCTTTGACAAC+GGG 0.403446 tig0044999:-5478 Msa1465180:intergenic
TTAGGATACTTTCTGTCCCT+TGG 0.410126 tig0044999:-5667 Msa1465180:intergenic
ACTGGAGCTGATAAACCAAT+TGG 0.421581 tig0044999:+5736 Msa1465180:CDS
TCGCGGCCAAATCGAGCTGC+TGG 0.461608 tig0044999:+5694 Msa1465180:CDS
CAAATCAACTTCTTTGACAA+CGG 0.479813 tig0044999:-5479 Msa1465180:intergenic
AGTGGTTATTGGAAAGCTAC+TGG 0.486265 tig0044999:+5718 Msa1465180:CDS
CCAAATCGAGCTGCTGGAAG+TGG 0.489371 tig0044999:+5700 Msa1465180:CDS
AGGGACAGAAAGTATCCTAA+TGG 0.497448 tig0044999:+5670 Msa1465180:CDS
TTCACCAATTCTTCATCAGT+GGG 0.514077 tig0044999:-5412 Msa1465180:intergenic
TAAGTACCTGGAAGCTGCCA+TGG 0.514238 tig0044999:-5514 Msa1465180:intergenic
CTGGAGCTGATAAACCAATT+GGG 0.521189 tig0044999:+5737 Msa1465180:CDS
GCCAACGTTGATAGATCAGC+CGG 0.527376 tig0044999:+5859 Msa1465180:CDS
GTTACCATAGTGAGAAAGAA+TGG 0.534616 tig0044999:+5632 Msa1465180:CDS
TACTTGTGTCGCAAATGTGC+TGG 0.543753 tig0044999:+5439 Msa1465180:CDS
AATTGGGAAATTGAAGCCGA+TGG 0.549113 tig0044999:+5753 Msa1465180:CDS
ATTGGGAAATTGAAGCCGAT+GGG 0.565472 tig0044999:+5754 Msa1465180:CDS
ATTCACCAATTCTTCATCAG+TGG 0.576758 tig0044999:-5413 Msa1465180:intergenic
GAAAGTATCCTAATGGTTCG+CGG 0.583925 tig0044999:+5677 Msa1465180:CDS
ATTTGTATAAGTTTGATCCA+TGG 0.588059 tig0044999:+5497 Msa1465180:CDS
ACACAAGAAACAAGAATGCA+AGG 0.604942 tig0044999:+5355 Msa1465180:exon
TCCGGCTGATCTATCAACGT+TGG 0.609930 tig0044999:-5860 Msa1465180:intergenic
AAGGCGTTAGTATTCTATGC+CGG 0.611791 tig0044999:+5784 Msa1465180:CDS
GTGGGGTGAAATCTGAAACC+AGG 0.631314 tig0044999:-5394 Msa1465180:intergenic
TTGGGAAATTGAAGCCGATG+GGG 0.639522 tig0044999:+5755 Msa1465180:CDS
GGTGAATTAGAATTACCACC+TGG 0.666365 tig0044999:+5376 Msa1465180:CDS
TCACCAATTCTTCATCAGTG+GGG 0.710619 tig0044999:-5411 Msa1465170:intergenic
GGGTGAAATCTGAAACCAGG+TGG 0.741808 tig0044999:-5391 Msa1465170:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAAAATTTGACTA+AGG - tig0044999:5556-5575 Msa1465180:intergenic 10.0%
!! ATAATTATTCATTTGCAATT+GGG - tig0044999:5583-5602 Msa1465180:intergenic 15.0%
!! AATAATTATTCATTTGCAAT+TGG - tig0044999:5584-5603 Msa1465180:intergenic 15.0%
!!! TTTTTTCTTCAGATTATTAT+TGG + tig0044999:5937-5956 Msa1465180:CDS 15.0%
!! TTTATTTATGTTTGCAGAAA+TGG + tig0044999:5609-5628 Msa1465180:intron 20.0%
!! TTATTTATGTTTGCAGAAAT+GGG + tig0044999:5610-5629 Msa1465180:intron 20.0%
! ATTTGTATAAGTTTGATCCA+TGG + tig0044999:5497-5516 Msa1465180:CDS 25.0%
!!! AATTAGTTTTAACTCCTTTG+GGG - tig0044999:5816-5835 Msa1465180:intergenic 25.0%
!!! CAATTAGTTTTAACTCCTTT+GGG - tig0044999:5817-5836 Msa1465180:intergenic 25.0%
! TATGTTCTGTTTTGTGAGTT+TGG - tig0044999:5233-5252 Msa1315260:intergenic 30.0%
AAATCAACTTCTTTGACAAC+GGG - tig0044999:5481-5500 Msa1465180:intergenic 30.0%
CAAATCAACTTCTTTGACAA+CGG - tig0044999:5482-5501 Msa1465180:intergenic 30.0%
ATTATTCATTTGCAATTGGG+AGG - tig0044999:5580-5599 Msa1465180:intergenic 30.0%
AATACCATTCTTTCTCACTA+TGG - tig0044999:5639-5658 Msa1465180:intergenic 30.0%
!!! AATGGTATTTTTTCTCTCCA+AGG + tig0044999:5650-5669 Msa1465180:CDS 30.0%
!!! ATGGTATTTTTTCTCTCCAA+GGG + tig0044999:5651-5670 Msa1465180:CDS 30.0%
!!! ATTAGTTTTAACTCCTTTGG+GGG - tig0044999:5815-5834 Msa1465180:intergenic 30.0%
!!! CCAATTAGTTTTAACTCCTT+TGG - tig0044999:5818-5837 Msa1465180:intergenic 30.0%
CCAAAGGAGTTAAAACTAAT+TGG + tig0044999:5815-5834 Msa1465180:CDS 30.0%
ACACAAGAAACAAGAATGCA+AGG + tig0044999:5355-5374 Msa1465180:exon 35.0%
TTCACCAATTCTTCATCAGT+GGG - tig0044999:5415-5434 Msa1465180:intergenic 35.0%
ATTCACCAATTCTTCATCAG+TGG - tig0044999:5416-5435 Msa1465180:intergenic 35.0%
! TTCTAGCTAGATTAAGTACC+TGG - tig0044999:5529-5548 Msa1465180:intergenic 35.0%
GTTACCATAGTGAGAAAGAA+TGG + tig0044999:5632-5651 Msa1465180:CDS 35.0%
!!! CCTCAAGTTGTTTTTCTTTC+CGG - tig0044999:5881-5900 Msa1465180:intergenic 35.0%
CGGAAAGAAAAACAACTTGA+GGG + tig0044999:5879-5898 Msa1465180:CDS 35.0%
! AAACAACTTGAGGGTATGTT+TGG + tig0044999:5888-5907 Msa1465180:CDS 35.0%
GGTGAATTAGAATTACCACC+TGG + tig0044999:5376-5395 Msa1465180:CDS 40.0%
TCACCAATTCTTCATCAGTG+GGG - tig0044999:5414-5433 Msa1465180:intergenic 40.0%
TTAGGATACTTTCTGTCCCT+TGG - tig0044999:5670-5689 Msa1465180:intergenic 40.0%
!! AGGGACAGAAAGTATCCTAA+TGG + tig0044999:5670-5689 Msa1465180:CDS 40.0%
!! GAAAGTATCCTAATGGTTCG+CGG + tig0044999:5677-5696 Msa1465180:CDS 40.0%
AGTGGTTATTGGAAAGCTAC+TGG + tig0044999:5718-5737 Msa1465180:CDS 40.0%
ACTGGAGCTGATAAACCAAT+TGG + tig0044999:5736-5755 Msa1465180:CDS 40.0%
CTGGAGCTGATAAACCAATT+GGG + tig0044999:5737-5756 Msa1465180:CDS 40.0%
! ATCGGCTTCAATTTCCCAAT+TGG - tig0044999:5754-5773 Msa1465180:intergenic 40.0%
AATTGGGAAATTGAAGCCGA+TGG + tig0044999:5753-5772 Msa1465180:CDS 40.0%
ATTGGGAAATTGAAGCCGAT+GGG + tig0044999:5754-5773 Msa1465180:CDS 40.0%
! AACGCCTTTTTAATCCCCAT+CGG - tig0044999:5772-5791 Msa1465180:intergenic 40.0%
! AAGGCGTTAGTATTCTATGC+CGG + tig0044999:5784-5803 Msa1465180:CDS 40.0%
CCGGAAAGAAAAACAACTTG+AGG + tig0044999:5878-5897 Msa1465180:CDS 40.0%
TCACCCCACTGATGAAGAAT+TGG + tig0044999:5408-5427 Msa1465180:CDS 45.0%
TACTTGTGTCGCAAATGTGC+TGG + tig0044999:5439-5458 Msa1465180:CDS 45.0%
TTGGGAAATTGAAGCCGATG+GGG + tig0044999:5755-5774 Msa1465180:CDS 45.0%
GAAGCCGATGGGGATTAAAA+AGG + tig0044999:5765-5784 Msa1465180:CDS 45.0%
! GGGTGAAATCTGAAACCAGG+TGG - tig0044999:5394-5413 Msa1465180:intergenic 50.0%
! GTGGGGTGAAATCTGAAACC+AGG - tig0044999:5397-5416 Msa1465180:intergenic 50.0%
TTTGATCCATGGCAGCTTCC+AGG + tig0044999:5508-5527 Msa1465180:CDS 50.0%
TAAGTACCTGGAAGCTGCCA+TGG - tig0044999:5517-5536 Msa1465180:intergenic 50.0%
GAGCTGCTGGAAGTGGTTAT+TGG + tig0044999:5707-5726 Msa1465180:CDS 50.0%
! AACTCCTTTGGGGGCTTTAC+CGG - tig0044999:5806-5825 Msa1465180:intergenic 50.0%
! GCCAACGTTGATAGATCAGC+CGG + tig0044999:5859-5878 Msa1465180:CDS 50.0%
TCCGGCTGATCTATCAACGT+TGG - tig0044999:5863-5882 Msa1465180:intergenic 50.0%
! CGATTTGGCCGCGAACCATT+AGG - tig0044999:5688-5707 Msa1465180:intergenic 55.0%
CCACTTCCAGCAGCTCGATT+TGG - tig0044999:5703-5722 Msa1465180:intergenic 55.0%
CCAAATCGAGCTGCTGGAAG+TGG + tig0044999:5700-5719 Msa1465180:CDS 55.0%
TATGCCGGTAAAGCCCCCAA+AGG + tig0044999:5799-5818 Msa1465180:CDS 55.0%
TCGCGGCCAAATCGAGCTGC+TGG + tig0044999:5694-5713 Msa1465180:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0044999 gene 5225 5966 5225 ID=Msa1465180;Name=Msa1465180
tig0044999 mRNA 5225 5966 5225 ID=Msa1465180-mRNA-1;Parent=Msa1465180;Name=Msa1465180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=145|1|1|1|1|1|2|0|167
tig0044999 exon 5225 5529 5225 ID=Msa1465180-mRNA-1:exon:24714;Parent=Msa1465180-mRNA-1
tig0044999 exon 5626 5966 5626 ID=Msa1465180-mRNA-1:exon:24715;Parent=Msa1465180-mRNA-1
tig0044999 five_prime_UTR 5225 5369 5225 ID=Msa1465180-mRNA-1:five_prime_utr;Parent=Msa1465180-mRNA-1
tig0044999 CDS 5370 5529 5370 ID=Msa1465180-mRNA-1:cds;Parent=Msa1465180-mRNA-1
tig0044999 CDS 5626 5966 5626 ID=Msa1465180-mRNA-1:cds;Parent=Msa1465180-mRNA-1
Gene Sequence

>Msa1465180

ATGCAAGGTGAATTAGAATTACCACCTGGTTTCAGATTTCACCCCACTGATGAAGAATTGGTGAATCATTACTTGTGTCGCAAATGTGCTGGTCAATCTATTTCTGTTCCCGTTGTCAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTTACCATAGTGAGAAAGAATGGTATTTTTTCTCTCCAAGGGACAGAAAGTATCCTAATGGTTCGCGGCCAAATCGAGCTGCTGGAAGTGGTTATTGGAAAGCTACTGGAGCTGATAAACCAATTGGGAAATTGAAGCCGATGGGGATTAAAAAGGCGTTAGTATTCTATGCCGGTAAAGCCCCCAAAGGAGTTAAAACTAATTGGATTATGCACGAATATCGTCTTGCCAACGTTGATAGATCAGCCGGAAAGAAAAACAACTTGAGGGTATGTTTGGTGTCTCACACAACATTTTCTAGTTTTTTTTTTCTTCAGATTATTATTGGTGATGTC
Protein sequence

>Msa1465180

MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPEMGYHSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKLKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRVCLVSHTTFSSFFFLQIIIGDV