AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1094410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094410 MtrunA17_Chr7g0224391 98.627 437 6 0 1 437 1 437 0.0 894
Msa1094410 MtrunA17_Chr3g0132001 66.587 419 137 2 20 437 18 434 0.0 585
Msa1094410 MtrunA17_Chr8g0386141 61.449 428 160 3 12 437 4 428 0.0 538
Msa1094410 MtrunA17_Chr4g0001861 34.483 435 266 7 13 435 3 430 2.25e-84 265
Msa1094410 MtrunA17_Chr2g0334001 34.247 438 262 9 13 435 3 429 3.04e-82 259
Msa1094410 MtrunA17_Chr8g0371821 34.895 427 254 10 23 435 10 426 1.12e-78 250
Msa1094410 MtrunA17_Chr5g0433641 35.917 387 234 8 20 397 14 395 5.28e-77 247
Msa1094410 MtrunA17_Chr2g0306321 36.456 395 229 14 36 412 41 431 7.39e-76 244
Msa1094410 MtrunA17_Chr1g0191081 34.419 430 255 11 19 431 21 440 5.03e-75 241
Msa1094410 MtrunA17_Chr1g0165671 34.375 384 240 7 19 396 30 407 4.86e-74 239
Msa1094410 MtrunA17_Chr7g0273721 34.367 387 239 8 19 395 14 395 2.05e-72 235
Msa1094410 MtrunA17_Chr1g0165661 33.333 423 264 10 20 429 13 430 1.14e-71 233
Msa1094410 MtrunA17_Chr1g0165681 33.596 381 241 8 23 396 16 391 8.54e-71 231
Msa1094410 MtrunA17_Chr7g0273761 32.870 432 264 10 20 433 386 809 9.25e-70 236
Msa1094410 MtrunA17_Chr7g0273761 30.612 294 190 6 150 433 32 321 7.03e-39 149
Msa1094410 MtrunA17_Chr7g0273781 32.637 383 247 5 20 395 47 425 9.21e-68 223
Msa1094410 MtrunA17_Chr7g0273731 33.073 384 246 6 19 395 96 475 2.84e-67 223
Msa1094410 MtrunA17_Chr7g0273791 31.593 383 251 6 20 395 14 392 1.23e-65 218
Msa1094410 MtrunA17_Chr3g0141851 32.947 431 258 13 22 436 18 433 6.62e-65 215
Msa1094410 MtrunA17_Chr2g0311401 36.120 299 171 5 150 434 6 298 4.32e-64 208
Msa1094410 MtrunA17_Chr3g0087401 30.769 442 266 12 24 432 10 444 1.12e-63 212
Msa1094410 MtrunA17_Chr4g0027071 32.366 448 266 15 18 436 14 453 5.44e-61 205
Msa1094410 MtrunA17_Chr7g0235531 30.626 431 281 8 20 435 8 435 1.31e-60 203
Msa1094410 MtrunA17_Chr7g0252731 29.976 417 258 10 22 426 23 417 2.27e-60 202
Msa1094410 MtrunA17_Chr4g0072041 32.506 403 235 9 24 396 22 417 2.50e-58 198
Msa1094410 MtrunA17_Chr1g0165711 32.021 381 212 10 21 396 14 352 1.70e-55 189
Msa1094410 MtrunA17_Chr3g0113821 31.422 436 269 12 20 436 9 433 4.49e-55 189
Msa1094410 MtrunA17_Chr4g0054081 29.777 403 244 9 24 395 17 411 1.95e-48 171
Msa1094410 MtrunA17_Chr7g0253541 30.310 419 240 16 13 391 2 408 2.38e-46 166
Msa1094410 MtrunA17_Chr2g0283361 29.056 413 274 11 39 437 29 436 1.34e-44 161
Msa1094410 MtrunA17_Chr3g0106691 32.250 400 227 15 23 392 63 448 1.43e-43 159
Msa1094410 MtrunA17_Chr6g0470591 31.635 373 229 12 38 392 42 406 8.02e-43 156
Msa1094410 MtrunA17_Chr7g0253531 28.906 384 231 10 51 396 37 416 8.06e-40 148
Msa1094410 MtrunA17_Chr3g0106721 34.416 308 184 11 65 360 65 366 4.35e-39 146
Msa1094410 MtrunA17_Chr7g0253501 28.894 398 213 12 51 396 37 416 7.81e-39 145
Msa1094410 MtrunA17_Chr3g0106661 28.222 450 283 16 23 436 17 462 2.98e-38 144
Msa1094410 MtrunA17_Chr7g0270771 35.000 280 150 10 23 294 12 267 8.78e-38 138
Msa1094410 MtrunA17_Chr3g0106761 32.143 336 187 15 82 392 28 347 8.03e-36 136
Msa1094410 MtrunA17_Chr3g0123061 26.866 402 247 15 23 408 12 382 1.87e-34 132
Msa1094410 MtrunA17_Chr3g0106741 32.440 336 186 17 82 392 59 378 7.24e-34 131
Msa1094410 MtrunA17_Chr5g0442691 27.877 391 240 13 37 393 54 436 8.92e-33 129
Msa1094410 MtrunA17_Chr5g0442701 27.621 391 241 13 37 393 31 413 5.08e-32 127
Msa1094410 MtrunA17_Chr6g0471971 31.496 254 131 9 165 408 1 221 1.13e-31 120
Msa1094410 MtrunA17_Chr7g0252771 26.953 256 173 4 189 435 1 251 1.24e-29 115
Msa1094410 MtrunA17_Chr3g0134091 29.841 315 195 10 56 356 56 358 2.68e-29 119
Msa1094410 MtrunA17_Chr3g0106711 37.566 189 104 5 23 199 17 203 2.71e-27 109
Msa1094410 MtrunA17_Chr3g0134071 26.847 406 252 16 55 432 57 445 4.27e-27 113
Msa1094410 MtrunA17_Chr4g0053061 26.733 404 249 17 58 429 77 465 1.14e-26 112
Msa1094410 MtrunA17_Chr5g0442721 25.118 422 269 15 9 393 4 415 1.75e-26 111
Msa1094410 MtrunA17_Chr8g0359251 25.450 389 259 10 63 433 58 433 5.55e-26 109
Msa1094410 MtrunA17_Chr8g0374911 25.750 400 258 16 58 429 70 458 6.72e-26 109
Msa1094410 MtrunA17_Chr3g0134121 28.338 367 227 13 14 356 5 359 8.02e-26 109
Msa1094410 MtrunA17_Chr6g0471381 30.653 199 128 6 201 395 7 199 9.16e-26 105
Msa1094410 MtrunA17_Chr4g0053111 26.485 404 255 14 54 429 46 435 1.03e-25 108
Msa1094410 MtrunA17_Chr3g0134041 25.248 404 258 13 55 432 53 438 1.18e-25 108
Msa1094410 MtrunA17_Chr3g0125001 25.897 390 266 12 63 437 50 431 3.90e-25 107
Msa1094410 MtrunA17_Chr3g0097841 32.212 208 125 3 244 435 33 240 6.81e-25 102
Msa1094410 MtrunA17_Chr8g0374641 26.799 403 245 19 58 429 49 432 1.04e-24 105
Msa1094410 MtrunA17_Chr3g0095731 25.455 385 240 12 45 394 41 413 1.61e-24 105
Msa1094410 MtrunA17_Chr4g0053081 25.823 395 249 16 61 429 57 433 2.55e-24 104
Msa1094410 MtrunA17_Chr4g0004691 29.143 175 120 2 14 188 3 173 2.66e-24 99.4
Msa1094410 MtrunA17_Chr3g0095721 25.915 355 226 11 68 394 72 417 3.09e-24 104
Msa1094410 MtrunA17_Chr4g0010311 26.873 387 245 13 68 429 55 428 3.16e-24 104
Msa1094410 MtrunA17_Chr4g0010361 25.897 390 256 14 63 429 50 429 3.22e-24 104
Msa1094410 MtrunA17_Chr4g0010331 25.501 349 230 11 63 392 50 387 5.20e-24 103
Msa1094410 MtrunA17_Chr7g0273741 36.296 135 83 2 20 151 14 148 1.80e-23 95.9
Msa1094410 MtrunA17_Chr4g0053091 25.562 356 211 11 61 392 60 385 2.39e-23 101
Msa1094410 MtrunA17_Chr6g0471371 37.179 156 90 4 19 170 12 163 7.47e-23 95.1
Msa1094410 MtrunA17_Chr4g0010121 25.628 398 255 14 58 429 89 471 1.15e-22 100
Msa1094410 MtrunA17_Chr1g0199561 24.368 435 277 15 13 413 1 417 1.94e-22 99.4
Msa1094410 MtrunA17_Chr5g0408911 24.876 402 260 15 37 415 41 423 2.82e-22 99.0
Msa1094410 MtrunA17_Chr3g0134061 24.171 422 269 15 14 395 4 414 2.84e-22 99.0
Msa1094410 MtrunA17_Chr3g0098961 37.705 122 73 2 20 138 17 138 3.01e-22 93.6
Msa1094410 MtrunA17_Chr8g0354371 26.393 341 232 10 63 392 59 391 3.21e-22 98.6
Msa1094410 MtrunA17_Chr6g0467861 26.834 477 283 23 13 437 45 507 4.37e-22 98.6
Msa1094410 MtrunA17_Chr7g0274021 25.824 364 241 11 12 362 5 352 5.06e-22 98.2
Msa1094410 MtrunA17_Chr8g0376901 25.122 410 249 16 13 392 1 382 3.18e-21 95.5
Msa1094410 MtrunA17_Chr4g0010351 29.242 277 170 11 68 327 55 322 4.28e-21 94.4
Msa1094410 MtrunA17_Chr7g0224131 24.479 384 265 12 63 429 50 425 4.63e-21 95.1
Msa1094410 MtrunA17_Chr3g0113181 24.523 367 222 11 68 392 66 419 7.17e-21 94.7
Msa1094410 MtrunA17_Chr8g0361781 23.469 392 264 13 20 392 12 386 1.04e-20 94.0
Msa1094410 MtrunA17_Chr5g0436621 23.316 386 228 11 67 393 60 436 1.13e-20 94.4
Msa1094410 MtrunA17_Chr4g0010381 26.154 390 243 17 68 429 55 427 3.56e-20 92.4
Msa1094410 MtrunA17_Chr8g0376891 22.667 450 289 16 13 432 1 421 5.13e-20 92.0
Msa1094410 MtrunA17_Chr5g0438701 21.995 441 297 14 13 432 1 415 2.50e-19 89.7
Msa1094410 MtrunA17_Chr1g0165741 34.815 135 85 2 20 151 13 147 3.08e-19 84.0
Msa1094410 MtrunA17_Chr3g0134101 27.097 310 194 9 56 356 74 360 5.40e-19 89.0
Msa1094410 MtrunA17_Chr8g0361771 23.833 407 258 13 15 392 3 386 8.56e-19 88.2
Msa1094410 MtrunA17_Chr3g0134111 24.619 394 255 14 25 390 19 398 3.05e-18 86.7
Msa1094410 MtrunA17_Chr7g0219331 24.148 352 235 10 68 391 157 504 3.37e-18 87.0
Msa1094410 MtrunA17_Chr7g0219241 24.155 414 257 16 67 435 68 469 5.02e-18 86.3
Msa1094410 MtrunA17_Chr7g0219291 23.833 407 260 14 68 435 416 811 1.39e-17 85.5
Msa1094410 MtrunA17_Chr2g0323481 22.778 360 238 11 68 392 62 416 3.46e-17 83.6
Msa1094410 MtrunA17_Chr7g0219301 24.716 352 233 10 68 391 64 411 5.39e-17 83.6
Msa1094410 MtrunA17_Chr4g0004701 26.178 191 120 5 265 435 49 238 6.01e-17 80.1
Msa1094410 MtrunA17_Chr2g0323421 24.930 357 233 10 68 392 111 464 1.64e-16 81.6
Msa1094410 MtrunA17_Chr7g0252761 32.374 139 91 3 20 156 20 157 4.28e-16 75.9
Msa1094410 MtrunA17_Chr8g0378151 29.609 179 123 2 24 201 20 196 1.51e-15 78.2
Msa1094410 MtrunA17_Chr7g0219181 22.837 416 263 15 67 435 67 471 1.30e-14 75.5
Msa1094410 MtrunA17_Chr3g0097851 37.079 89 56 0 265 353 26 114 1.35e-14 70.1
Msa1094410 MtrunA17_Chr8g0353421 34.906 106 66 2 21 123 14 119 1.93e-14 70.1
Msa1094410 MtrunA17_Chr6g0455341 24.286 350 232 12 68 391 70 412 2.18e-14 75.1
Msa1094410 MtrunA17_Chr1g0165731 28.319 113 76 3 165 276 1 109 4.58e-14 68.2
Msa1094410 MtrunA17_Chr6g0454761 22.006 309 214 9 150 435 634 938 5.55e-14 74.3
Msa1094410 MtrunA17_Chr6g0454761 23.134 268 172 8 150 391 147 406 5.30e-13 71.2
Msa1094410 MtrunA17_Chr2g0311411 31.447 159 95 5 13 170 3 148 1.96e-13 67.8
Msa1094410 MtrunA17_Chr7g0273701 33.028 109 70 2 292 397 1 109 1.97e-13 68.2
Msa1094410 MtrunA17_Chr1g0148851 23.457 324 225 10 48 359 39 351 2.76e-13 71.2
Msa1094410 MtrunA17_Chr2g0323471 21.289 357 241 9 67 391 81 429 6.08e-13 70.5
Msa1094410 MtrunA17_Chr6g0471891 26.061 165 92 5 234 396 1 137 4.47e-12 65.5
Msa1094410 MtrunA17_Chr2g0302471 28.947 152 97 5 15 165 4 145 6.16e-12 63.2
Msa1094410 MtrunA17_Chr8g0339641 22.520 373 242 11 67 397 61 428 7.84e-12 67.0
Msa1094410 MtrunA17_Chr3g0132831 23.629 237 160 7 48 275 46 270 8.09e-12 67.0
Msa1094410 MtrunA17_Chr3g0106631 32.692 156 97 6 151 302 2 153 2.02e-11 62.4
Msa1094410 MtrunA17_Chr3g0097831 36.986 73 44 1 24 94 10 82 3.09e-11 59.3
Msa1094410 MtrunA17_Chr7g0219121 23.256 301 174 12 62 315 61 351 5.69e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094410 AT5G41040.1 73.210 433 110 4 11 437 25 457 0.0 671
Msa1094410 AT5G41040.2 73.210 433 110 4 11 437 9 441 0.0 669
Msa1094410 AT5G63560.1 61.283 421 153 4 20 437 13 426 0.0 526
Msa1094410 AT3G48720.1 55.609 419 182 3 21 437 14 430 2.73e-177 502
Msa1094410 AT5G48930.1 34.174 436 268 7 12 435 2 430 1.76e-81 258
Msa1094410 AT1G65450.1 36.028 433 253 12 20 436 22 446 5.18e-77 247
Msa1094410 AT1G03390.1 35.747 442 264 14 13 437 19 457 7.56e-77 247
Msa1094410 AT1G27620.1 33.724 427 260 9 19 435 12 425 1.45e-73 238
Msa1094410 AT5G17540.1 32.637 383 247 7 20 395 13 391 5.90e-64 213
Msa1094410 AT3G03480.1 34.987 383 231 10 23 395 26 400 2.03e-62 209
Msa1094410 AT1G28680.1 32.258 434 270 12 20 435 13 440 6.81e-57 194
Msa1094410 AT2G19070.1 32.000 400 238 11 26 396 14 408 1.31e-56 193
Msa1094410 AT5G57840.1 32.316 393 235 8 20 390 7 390 5.59e-56 191
Msa1094410 AT2G40230.1 30.787 432 271 11 20 435 9 428 1.76e-53 185
Msa1094410 AT1G28680.2 32.565 347 222 8 20 360 13 353 4.35e-50 175
Msa1094410 AT4G31910.1 30.189 424 259 13 31 423 26 443 6.09e-48 171
Msa1094410 AT5G07080.1 30.227 440 269 17 19 433 17 443 5.65e-45 162
Msa1094410 AT1G65450.3 32.639 288 176 7 161 436 1 282 6.94e-45 158
Msa1094410 AT2G25150.1 30.995 442 264 14 23 435 20 449 3.07e-41 152
Msa1094410 AT3G62160.1 29.592 392 238 12 22 398 11 379 6.26e-41 151
Msa1094410 AT3G47170.1 28.795 448 284 13 19 433 15 460 6.47e-41 152
Msa1094410 AT2G23510.1 28.894 443 272 16 23 436 20 448 4.61e-37 141
Msa1094410 AT1G78990.1 27.047 403 245 14 48 414 46 435 1.74e-33 131
Msa1094410 AT1G24430.1 27.818 417 254 17 35 432 27 415 8.15e-31 123
Msa1094410 AT1G31490.1 27.621 391 249 15 37 410 29 402 3.63e-29 119
Msa1094410 AT1G32910.1 24.796 367 247 11 46 393 44 400 9.36e-29 118
Msa1094410 AT5G16410.1 26.562 384 244 14 37 400 61 426 8.30e-27 112
Msa1094410 AT5G07870.1 28.754 313 196 9 62 356 66 369 1.71e-26 111
Msa1094410 AT5G42830.1 28.902 346 218 10 29 356 22 357 3.08e-26 110
Msa1094410 AT2G39980.1 26.455 378 215 11 68 392 62 429 5.95e-26 110
Msa1094410 AT5G23940.1 27.586 406 258 14 51 429 43 439 9.13e-24 103
Msa1094410 AT3G29670.1 24.112 394 271 12 48 419 42 429 1.26e-23 103
Msa1094410 AT5G07860.1 27.508 309 195 8 62 356 66 359 1.86e-23 102
Msa1094410 AT3G50270.1 26.463 393 250 17 68 434 62 441 4.21e-23 101
Msa1094410 AT5G61160.1 25.352 355 234 12 68 399 64 410 7.80e-23 100
Msa1094410 AT4G15390.1 23.624 436 286 16 23 432 15 429 1.35e-22 100
Msa1094410 AT4G15390.2 23.624 436 286 16 23 432 15 429 1.35e-22 100
Msa1094410 AT3G29635.1 24.289 387 267 11 71 436 70 451 1.43e-22 100
Msa1094410 AT1G24420.2 24.658 365 243 10 79 432 76 419 3.35e-22 99.0
Msa1094410 AT1G24420.1 24.658 365 243 10 79 432 76 419 3.35e-22 99.0
Msa1094410 AT3G30280.1 25.000 428 273 20 23 424 13 418 7.84e-21 94.7
Msa1094410 AT5G47950.1 24.439 401 254 17 48 432 42 409 5.15e-20 92.0
Msa1094410 AT3G50280.1 22.938 388 268 14 68 434 59 436 3.71e-19 89.7
Msa1094410 AT5G38130.1 24.251 367 250 12 71 419 82 438 2.53e-18 87.4
Msa1094410 AT5G23970.1 23.472 409 259 12 37 421 24 402 3.62e-18 86.7
Msa1094410 AT5G47980.1 23.744 438 281 18 23 431 12 425 5.99e-18 86.3
Msa1094410 AT3G29590.1 25.220 341 223 13 76 392 69 401 7.47e-18 85.9
Msa1094410 AT1G65450.2 45.455 110 55 4 20 125 22 130 1.42e-17 80.5
Msa1094410 AT4G15400.1 24.356 427 288 17 23 433 12 419 3.09e-17 84.0
Msa1094410 AT5G07850.1 25.364 343 216 14 20 343 27 348 2.22e-16 81.3
Msa1094410 AT5G67150.1 22.973 370 238 13 68 407 61 413 2.70e-16 81.3
Msa1094410 AT3G29680.1 22.481 387 276 8 68 435 62 443 3.55e-16 80.9
Msa1094410 AT3G50300.1 24.064 374 250 13 68 419 59 420 1.25e-15 79.0
Msa1094410 AT5G39090.1 22.667 375 269 11 78 436 75 444 3.75e-14 74.7
Msa1094410 AT1G03495.1 27.778 288 168 15 68 322 66 346 1.34e-13 72.0
Msa1094410 AT4G29250.1 22.844 429 283 17 34 433 33 442 4.68e-13 71.2
Msa1094410 AT3G50280.2 22.295 305 217 10 142 434 10 306 6.65e-13 69.7
Msa1094410 AT1G03940.1 24.510 408 257 17 68 436 66 461 6.18e-12 67.8
Msa1094410 AT3G50290.1 24.906 265 183 7 137 389 9 269 2.36e-11 64.7
Msa1094410 AT5G39050.1 21.725 313 219 6 150 436 152 464 6.16e-11 64.7
Msa1094410 AT4G13840.1 25.000 224 142 8 68 280 67 275 6.65e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTTCCCAAAGGGTATTT+TGG 0.104046 7_3:+16025549 Msa1094410:CDS
GTCTGGACCGGTTTCCTTGC+CGG 0.230469 7_3:+16025815 Msa1094410:CDS
CTTCAATGTCAGCAAATTCT+TGG 0.238280 7_3:-16025278 None:intergenic
AGAAGCTTTGTTTCTTGTTC+TGG 0.240151 7_3:-16025492 None:intergenic
GAAAATTCTAATTATCAAAA+TGG 0.257291 7_3:+16023627 Msa1094410:CDS
CACCATTTCATCTTCATATA+AGG 0.260329 7_3:-16025319 None:intergenic
TGCTTCACACAAATATGATA+TGG 0.268225 7_3:-16023439 None:intergenic
CCAAGATTTAATGCAGATAT+AGG 0.271308 7_3:+16025929 Msa1094410:CDS
GTTCATTATTACCCTCTTGC+TGG 0.281316 7_3:+16023852 Msa1094410:CDS
AAATACCCTTTGGGAAGTTT+TGG 0.290579 7_3:-16025546 None:intergenic
CACTGTATGTTTGATGGAAT+TGG 0.294988 7_3:+16025135 Msa1094410:CDS
CCGTTTCATACCACCGATTT+CGG 0.298332 7_3:+16025774 Msa1094410:CDS
AATTGTTCAATGGAAGAAAT+TGG 0.299341 7_3:+16023954 Msa1094410:CDS
CCTTTCTTTGTTTCTTCAGA+TGG 0.304433 7_3:-16023699 None:intergenic
TGAATAACCTTCACCGTATA+CGG 0.313318 7_3:-16025633 None:intergenic
GAACAAGCCCTTTCCGTATA+CGG 0.314033 7_3:+16025620 Msa1094410:CDS
AACAAGAGCTAGGCCATCTT+TGG 0.319090 7_3:+16025716 Msa1094410:CDS
CAAGTGTTGGTTCACTTGTT+AGG 0.323483 7_3:-16023671 None:intergenic
AGTGCTGTTTATGAATTTAT+TGG 0.329556 7_3:+16026028 Msa1094410:three_prime_UTR
TGGTGCAAATGCTCTATCTT+CGG 0.344041 7_3:-16025258 None:intergenic
TCCATTCCCAAAATACCCTT+TGG 0.350876 7_3:-16025556 None:intergenic
AGAAGCATTAATGTGCTTCT+TGG 0.357845 7_3:+16025879 Msa1094410:CDS
ATATTTGTGTGAAGCAATTC+AGG 0.371213 7_3:+16023446 Msa1094410:five_prime_UTR
GGTGCAAATGCTCTATCTTC+GGG 0.375653 7_3:-16025257 None:intergenic
CGATTTCGGTTGGGGAGAAC+CGG 0.379270 7_3:+16025788 Msa1094410:CDS
GAATGCTTGTGAAGTGATTA+AGG 0.383599 7_3:+16023809 Msa1094410:CDS
CCTATATCTGCATTAAATCT+TGG 0.386363 7_3:-16025929 None:intergenic
TATTCTTCAGATGCCTCCTT+TGG 0.394177 7_3:+16024043 Msa1094410:CDS
AAGTGCTTTCAGCATTTGTT+TGG 0.399533 7_3:+16025439 Msa1094410:CDS
TCCTTCTCCGGCAAGGAAAC+CGG 0.400213 7_3:-16025822 None:intergenic
GATGCCTCCTTTGGTTGCTC+AGG 0.401248 7_3:+16024052 Msa1094410:CDS
TCATACCACCGATTTCGGTT+GGG 0.412037 7_3:+16025779 Msa1094410:CDS
CGGTTCTCCCCAACCGAAAT+CGG 0.413358 7_3:-16025787 None:intergenic
TGGGGAGAACCGGTTCTGTC+TGG 0.419323 7_3:+16025798 Msa1094410:CDS
TTCATATAAGGTACTAGTGT+TGG 0.419653 7_3:-16025307 None:intergenic
TACCTTATATGAAGATGAAA+TGG 0.425519 7_3:+16025317 Msa1094410:CDS
CCATTCCCAAAATACCCTTT+GGG 0.427070 7_3:-16025555 None:intergenic
AACAAAATCACTTCCTTCTC+CGG 0.435908 7_3:-16025834 None:intergenic
CATACCACCGATTTCGGTTG+GGG 0.437822 7_3:+16025780 Msa1094410:CDS
TCCAAGGACTCTTGGTATGT+TGG 0.438373 7_3:+16023995 Msa1094410:CDS
TTCATACCACCGATTTCGGT+TGG 0.441418 7_3:+16025778 Msa1094410:CDS
TTCATTATTACCCTCTTGCT+GGG 0.443863 7_3:+16023853 Msa1094410:CDS
TTCTTTGTTTCTTCAGATGG+TGG 0.446811 7_3:-16023696 None:intergenic
AGTATGCTTCGATCGAGAAC+AGG 0.458088 7_3:-16025219 None:intergenic
GCTTCACACAAATATGATAT+GGG 0.459751 7_3:-16023438 None:intergenic
TGAAGAATATGTTTAGCATC+AGG 0.461984 7_3:-16024029 None:intergenic
AAACCTGATCCAAGGACTCT+TGG 0.464374 7_3:+16023987 Msa1094410:CDS
ATGAATCACTGTATGTTTGA+TGG 0.464465 7_3:+16025129 Msa1094410:CDS
ACAAATGCTGTTTGTAAAGC+AGG 0.466739 7_3:+16025588 Msa1094410:CDS
ATACCAAGAGTCCTTGGATC+AGG 0.478213 7_3:-16023990 None:intergenic
ACCAACATACCAAGAGTCCT+TGG 0.479611 7_3:-16023996 None:intergenic
GGCTGAAGCTAATTGTTCAA+TGG 0.480046 7_3:+16023944 Msa1094410:CDS
TCAGATGGTGGAACAAGTGT+TGG 0.489688 7_3:-16023684 None:intergenic
ACCGGTTTCCTTGCCGGAGA+AGG 0.494266 7_3:+16025821 Msa1094410:CDS
CTATGGAGTTTGTGAACTCA+TGG 0.496901 7_3:+16025160 Msa1094410:CDS
TTGGTAGTAAGCAATAACTA+AGG 0.501457 7_3:+16026047 Msa1094410:three_prime_UTR
AAAACCTCCACATTTGAACT+TGG 0.504811 7_3:-16025091 None:intergenic
CTCAGAGGGTAAACTGATTG+TGG 0.510531 7_3:+16023890 Msa1094410:CDS
AAGATCTTCATGACAGGAGC+AGG 0.513671 7_3:-16025906 None:intergenic
ACCTTCACCGTATACGGAAA+GGG 0.514785 7_3:-16025627 None:intergenic
TTGAACCAAAACTTCCCAAA+GGG 0.539116 7_3:+16025541 Msa1094410:CDS
TCCTCTCTTGACCATGTGAA+AGG 0.539507 7_3:-16025857 None:intergenic
GTTTGATGGAATTGGAGCTA+TGG 0.548532 7_3:+16025143 Msa1094410:CDS
TAATCAAGAAGTGTTTGAGA+TGG 0.549573 7_3:+16023605 Msa1094410:exon
GAAACCGGTCCAGACAGAAC+CGG 0.551440 7_3:-16025807 None:intergenic
CCGAAATCGGTGGTATGAAA+CGG 0.552192 7_3:-16025774 None:intergenic
AAAAGTGTACAAGCCAAAGA+TGG 0.555885 7_3:-16025729 None:intergenic
AGAACCGGTTCTGTCTGGAC+CGG 0.557075 7_3:+16025803 Msa1094410:CDS
GCCCTTTCCGTATACGGTGA+AGG 0.557341 7_3:+16025626 Msa1094410:CDS
TACTGATAGTTACATGAGAT+CGG 0.559146 7_3:+16025674 Msa1094410:CDS
TATTCAAGATGCAATCAAGA+TGG 0.561804 7_3:+16025650 Msa1094410:CDS
AGAACAGGAGGCACAGAAAG+TGG 0.562779 7_3:-16025204 None:intergenic
CCATCTGAAGAAACAAAGAA+AGG 0.565357 7_3:+16023699 Msa1094410:CDS
AAACTGATTGTGGATTGTAC+TGG 0.568236 7_3:+16023900 Msa1094410:CDS
TCTTGGAAGATCTTCATGAC+AGG 0.573252 7_3:-16025912 None:intergenic
TATGGAGTTTGTGAACTCAT+GGG 0.576378 7_3:+16025161 Msa1094410:CDS
TCCTTTCACATGGTCAAGAG+AGG 0.581268 7_3:+16025856 Msa1094410:CDS
AGATTAAGTATAAGCTCAGA+GGG 0.587672 7_3:+16023876 Msa1094410:CDS
CAGCTGACCAAGTTCAAATG+TGG 0.590914 7_3:+16025084 Msa1094410:intron
TCTCGATCGAAGCATACTAA+AGG 0.593265 7_3:+16025224 Msa1094410:CDS
AACCTTCACCGTATACGGAA+AGG 0.593644 7_3:-16025628 None:intergenic
GTGCAAATGCTCTATCTTCG+GGG 0.597277 7_3:-16025256 None:intergenic
AATCACTTCCTTCTCCGGCA+AGG 0.599797 7_3:-16025829 None:intergenic
CTGACCAAGTTCAAATGTGG+AGG 0.605830 7_3:+16025087 Msa1094410:CDS
TTTGAACCAAAACTTCCCAA+AGG 0.608712 7_3:+16025540 Msa1094410:CDS
ATACTTAATCTCCCAGCAAG+AGG 0.610225 7_3:-16023864 None:intergenic
TGCAAATGCTCTATCTTCGG+GGG 0.613923 7_3:-16025255 None:intergenic
ATATTACAAAACCTGATCCA+AGG 0.621561 7_3:+16023979 Msa1094410:CDS
CATACCTGAGCAACCAAAGG+AGG 0.626730 7_3:-16024056 None:intergenic
TACTTAATCTCCCAGCAAGA+GGG 0.629161 7_3:-16023863 None:intergenic
AAACATACCTGAGCAACCAA+AGG 0.647608 7_3:-16024059 None:intergenic
ATGGAGTTTGTGAACTCATG+GGG 0.648584 7_3:+16025162 Msa1094410:CDS
GAGATTAAGTATAAGCTCAG+AGG 0.659227 7_3:+16023875 Msa1094410:CDS
ATGCTTCGATCGAGAACAGG+AGG 0.660881 7_3:-16025216 None:intergenic
TTCTCCCCAACCGAAATCGG+TGG 0.671335 7_3:-16025784 None:intergenic
ATTGTGGATTGTACTGGAGA+AGG 0.681300 7_3:+16023906 Msa1094410:CDS
TCATGGGGAGAACTAGCAAG+AGG 0.683206 7_3:+16025177 Msa1094410:CDS
AAAGCTTTAGAAGATGATGG+CGG 0.739373 7_3:+16025390 Msa1094410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCAAATTATTTAAAAATTTA+GGG - chr7_3:16024393-16024412 None:intergenic 10.0%
!! TCCAAATTATTTAAAAATTT+AGG - chr7_3:16024394-16024413 None:intergenic 10.0%
!!! TTTTTAAATAATTTGGAATT+TGG + chr7_3:16024397-16024416 Msa1094410:intron 10.0%
!! TGATTAAAAAAATTTAGTTA+AGG + chr7_3:16024503-16024522 Msa1094410:intron 10.0%
!! GATTAAAAAAATTTAGTTAA+GGG + chr7_3:16024504-16024523 Msa1094410:intron 10.0%
!!! TTGTGTTATTTTTTATTATA+TGG + chr7_3:16025976-16025995 Msa1094410:three_prime_UTR 10.0%
!! GAAAATTCTAATTATCAAAA+TGG + chr7_3:16023627-16023646 Msa1094410:CDS 15.0%
!!! CCCTAAATTTTTAAATAATT+TGG + chr7_3:16024390-16024409 Msa1094410:intron 15.0%
!! CTTCTAAATCATTTATAATT+GGG - chr7_3:16024473-16024492 None:intergenic 15.0%
!! ACTTCTAAATCATTTATAAT+TGG - chr7_3:16024474-16024493 None:intergenic 15.0%
!!! AGTTTTTGTCAAAATTATAA+TGG + chr7_3:16024587-16024606 Msa1094410:intron 15.0%
!!! CTATTTGAGAAATTTTAAAT+AGG - chr7_3:16024711-16024730 None:intergenic 15.0%
!! AATGTTATGTTTGAAGATTA+AGG - chr7_3:16023541-16023560 None:intergenic 20.0%
!!! TTTTTGTTTGTTTGTAAAAC+AGG + chr7_3:16023577-16023596 Msa1094410:intron 20.0%
!! AAATGATTCAATGTATTCAT+AGG + chr7_3:16024195-16024214 Msa1094410:intron 20.0%
!! NNNNNNNNNCCTAAGATTTG+AGG - chr7_3:16024243-16024262 None:intergenic 20.0%
!! ATTTATGTATGATGAACATA+TGG + chr7_3:16024871-16024890 Msa1094410:intron 20.0%
!!! TTTTTGAAATATAGTTGATG+CGG + chr7_3:16025015-16025034 Msa1094410:intron 20.0%
! AATTGTTCAATGGAAGAAAT+TGG + chr7_3:16023954-16023973 Msa1094410:CDS 25.0%
! TTCATAGGTTACTTGTAATT+TGG + chr7_3:16024365-16024384 Msa1094410:intron 25.0%
! TCATAGGTTACTTGTAATTT+GGG + chr7_3:16024366-16024385 Msa1094410:intron 25.0%
! AAAAATATTTCGCACATGTT+TGG - chr7_3:16024645-16024664 None:intergenic 25.0%
! ACTTCAGTGACAAAAAATAA+AGG - chr7_3:16024756-16024775 None:intergenic 25.0%
!! TACTTTTGAACTTAGACATT+TGG - chr7_3:16024785-16024804 None:intergenic 25.0%
! CATACATAAATTCCTATGAA+GGG - chr7_3:16024862-16024881 None:intergenic 25.0%
! TCATACATAAATTCCTATGA+AGG - chr7_3:16024863-16024882 None:intergenic 25.0%
! TGTATCTCAACTAACATAAA+AGG + chr7_3:16024907-16024926 Msa1094410:intron 25.0%
! TACCTTATATGAAGATGAAA+TGG + chr7_3:16025317-16025336 Msa1094410:CDS 25.0%
!!! TTCAATTCTTTTAGTTTCTC+GGG - chr7_3:16025366-16025385 None:intergenic 25.0%
!!! CTTCAATTCTTTTAGTTTCT+CGG - chr7_3:16025367-16025386 None:intergenic 25.0%
!!! AAAAAAGCTTTAGAAGATGA+TGG + chr7_3:16025387-16025406 Msa1094410:CDS 25.0%
!!! AGTGCTGTTTATGAATTTAT+TGG + chr7_3:16026028-16026047 Msa1094410:three_prime_UTR 25.0%
GCTTCACACAAATATGATAT+GGG - chr7_3:16023441-16023460 None:intergenic 30.0%
TGCTTCACACAAATATGATA+TGG - chr7_3:16023442-16023461 None:intergenic 30.0%
ATATTTGTGTGAAGCAATTC+AGG + chr7_3:16023446-16023465 Msa1094410:five_prime_UTR 30.0%
!! TAATCAAGAAGTGTTTGAGA+TGG + chr7_3:16023605-16023624 Msa1094410:exon 30.0%
!!! TGTTTTGATCAAGGTTTGAT+AGG - chr7_3:16023734-16023753 None:intergenic 30.0%
!!! TTACAGCAATGTTTTGATCA+AGG - chr7_3:16023743-16023762 None:intergenic 30.0%
TTGCTTCAAAAATGAAGAGA+AGG + chr7_3:16023779-16023798 Msa1094410:CDS 30.0%
TGCTTCAAAAATGAAGAGAA+GGG + chr7_3:16023780-16023799 Msa1094410:CDS 30.0%
AGATTAAGTATAAGCTCAGA+GGG + chr7_3:16023876-16023895 Msa1094410:CDS 30.0%
ATATTACAAAACCTGATCCA+AGG + chr7_3:16023979-16023998 Msa1094410:CDS 30.0%
TGAAGAATATGTTTAGCATC+AGG - chr7_3:16024032-16024051 None:intergenic 30.0%
!!! TACTAGTCTATTTTTGCAGT+TGG + chr7_3:16024085-16024104 Msa1094410:intron 30.0%
! ATTTTTGCAGTTGGATTTTC+TGG + chr7_3:16024094-16024113 Msa1094410:intron 30.0%
!! TTTGTTAGTTACTTGCTATG+AGG + chr7_3:16024118-16024137 Msa1094410:intron 30.0%
ATGAATCACTGTATGTTTGA+TGG + chr7_3:16025129-16025148 Msa1094410:CDS 30.0%
! TTCATATAAGGTACTAGTGT+TGG - chr7_3:16025310-16025329 None:intergenic 30.0%
CACCATTTCATCTTCATATA+AGG - chr7_3:16025322-16025341 None:intergenic 30.0%
TATTCAAGATGCAATCAAGA+TGG + chr7_3:16025650-16025669 Msa1094410:CDS 30.0%
TACTGATAGTTACATGAGAT+CGG + chr7_3:16025674-16025693 Msa1094410:CDS 30.0%
CCTATATCTGCATTAAATCT+TGG - chr7_3:16025932-16025951 None:intergenic 30.0%
CCAAGATTTAATGCAGATAT+AGG + chr7_3:16025929-16025948 Msa1094410:CDS 30.0%
! TTGGTAGTAAGCAATAACTA+AGG + chr7_3:16026047-16026066 Msa1094410:three_prime_UTR 30.0%
GCAATGTTGAAAATGTCACA+TGG - chr7_3:16023503-16023522 None:intergenic 35.0%
! TTCTTTGTTTCTTCAGATGG+TGG - chr7_3:16023699-16023718 None:intergenic 35.0%
! CCTTTCTTTGTTTCTTCAGA+TGG - chr7_3:16023702-16023721 None:intergenic 35.0%
CCATCTGAAGAAACAAAGAA+AGG + chr7_3:16023699-16023718 Msa1094410:CDS 35.0%
GAATGCTTGTGAAGTGATTA+AGG + chr7_3:16023809-16023828 Msa1094410:CDS 35.0%
TTCATTATTACCCTCTTGCT+GGG + chr7_3:16023853-16023872 Msa1094410:CDS 35.0%
GAGATTAAGTATAAGCTCAG+AGG + chr7_3:16023875-16023894 Msa1094410:CDS 35.0%
! AAACTGATTGTGGATTGTAC+TGG + chr7_3:16023900-16023919 Msa1094410:CDS 35.0%
TCAAGTGTATCTTTGATGAG+TGG + chr7_3:16024533-16024552 Msa1094410:intron 35.0%
! CGTCGCAATATTTTATATCG+TGG + chr7_3:16024987-16025006 Msa1094410:intron 35.0%
AAAACCTCCACATTTGAACT+TGG - chr7_3:16025094-16025113 None:intergenic 35.0%
! AAATGTGGAGGTTTTTCTCT+TGG + chr7_3:16025099-16025118 Msa1094410:CDS 35.0%
CACTGTATGTTTGATGGAAT+TGG + chr7_3:16025135-16025154 Msa1094410:CDS 35.0%
TATGGAGTTTGTGAACTCAT+GGG + chr7_3:16025161-16025180 Msa1094410:CDS 35.0%
CTTCAATGTCAGCAAATTCT+TGG - chr7_3:16025281-16025300 None:intergenic 35.0%
!! AAAGCTTTAGAAGATGATGG+CGG + chr7_3:16025390-16025409 Msa1094410:CDS 35.0%
AAGTGCTTTCAGCATTTGTT+TGG + chr7_3:16025439-16025458 Msa1094410:CDS 35.0%
!! AGAAGCTTTGTTTCTTGTTC+TGG - chr7_3:16025495-16025514 None:intergenic 35.0%
!!! AAGCTTCTTTTTGCTGTTGA+TGG + chr7_3:16025507-16025526 Msa1094410:CDS 35.0%
!!! TTCTTTTTGCTGTTGATGGA+AGG + chr7_3:16025511-16025530 Msa1094410:CDS 35.0%
!!! TCTTTTTGCTGTTGATGGAA+GGG + chr7_3:16025512-16025531 Msa1094410:CDS 35.0%
TTTGAACCAAAACTTCCCAA+AGG + chr7_3:16025540-16025559 Msa1094410:CDS 35.0%
TTGAACCAAAACTTCCCAAA+GGG + chr7_3:16025541-16025560 Msa1094410:CDS 35.0%
!! AAATACCCTTTGGGAAGTTT+TGG - chr7_3:16025549-16025568 None:intergenic 35.0%
!!! AAACTTCCCAAAGGGTATTT+TGG + chr7_3:16025549-16025568 Msa1094410:CDS 35.0%
!!! AACTTCCCAAAGGGTATTTT+GGG + chr7_3:16025550-16025569 Msa1094410:CDS 35.0%
! ACAAATGCTGTTTGTAAAGC+AGG + chr7_3:16025588-16025607 Msa1094410:CDS 35.0%
TGAATAACCTTCACCGTATA+CGG - chr7_3:16025636-16025655 None:intergenic 35.0%
!! ATCGGCTATCGATTATTTTG+AGG + chr7_3:16025692-16025711 Msa1094410:CDS 35.0%
!!! ATTTTGAGGTAACAAGAGCT+AGG + chr7_3:16025706-16025725 Msa1094410:CDS 35.0%
! AAAAGTGTACAAGCCAAAGA+TGG - chr7_3:16025732-16025751 None:intergenic 35.0%
! GTACACTTTTGATCACAACT+TGG + chr7_3:16025742-16025761 Msa1094410:CDS 35.0%
! TTTTGATCACAACTTGGTCT+AGG + chr7_3:16025748-16025767 Msa1094410:CDS 35.0%
AACAAAATCACTTCCTTCTC+CGG - chr7_3:16025837-16025856 None:intergenic 35.0%
! GTGATTTTGTTCCTTTCACA+TGG + chr7_3:16025846-16025865 Msa1094410:CDS 35.0%
!! AGAAGCATTAATGTGCTTCT+TGG + chr7_3:16025879-16025898 Msa1094410:CDS 35.0%
!! CAAGTGTTGGTTCACTTGTT+AGG - chr7_3:16023674-16023693 None:intergenic 40.0%
GTTCATTATTACCCTCTTGC+TGG + chr7_3:16023852-16023871 Msa1094410:CDS 40.0%
TACTTAATCTCCCAGCAAGA+GGG - chr7_3:16023866-16023885 None:intergenic 40.0%
ATACTTAATCTCCCAGCAAG+AGG - chr7_3:16023867-16023886 None:intergenic 40.0%
! ATTGTGGATTGTACTGGAGA+AGG + chr7_3:16023906-16023925 Msa1094410:CDS 40.0%
!!! AGAAGGTGCTCTTTTTGTTG+AGG + chr7_3:16023923-16023942 Msa1094410:CDS 40.0%
GGCTGAAGCTAATTGTTCAA+TGG + chr7_3:16023944-16023963 Msa1094410:CDS 40.0%
TATTCTTCAGATGCCTCCTT+TGG + chr7_3:16024043-16024062 Msa1094410:CDS 40.0%
AAACATACCTGAGCAACCAA+AGG - chr7_3:16024062-16024081 None:intergenic 40.0%
!! ATGAGGCACTGACACAAATA+TGG + chr7_3:16024135-16024154 Msa1094410:intron 40.0%
ACTGACACAAATATGGACAC+TGG + chr7_3:16024142-16024161 Msa1094410:intron 40.0%
! TGTATTCATAGGTGTCGTGT+CGG + chr7_3:16024206-16024225 Msa1094410:intron 40.0%
!!! GCATTTTTCAAGCCCTTCAT+AGG + chr7_3:16024847-16024866 Msa1094410:intron 40.0%
TCATGTTCCAACTGTAGTTG+TGG - chr7_3:16025041-16025060 None:intergenic 40.0%
GTTTGATGGAATTGGAGCTA+TGG + chr7_3:16025143-16025162 Msa1094410:CDS 40.0%
CTATGGAGTTTGTGAACTCA+TGG + chr7_3:16025160-16025179 Msa1094410:CDS 40.0%
ATGGAGTTTGTGAACTCATG+GGG + chr7_3:16025162-16025181 Msa1094410:CDS 40.0%
TCTCGATCGAAGCATACTAA+AGG + chr7_3:16025224-16025243 Msa1094410:CDS 40.0%
TGGTGCAAATGCTCTATCTT+CGG - chr7_3:16025261-16025280 None:intergenic 40.0%
CCATTCCCAAAATACCCTTT+GGG - chr7_3:16025558-16025577 None:intergenic 40.0%
TCCATTCCCAAAATACCCTT+TGG - chr7_3:16025559-16025578 None:intergenic 40.0%
TCTTGGAAGATCTTCATGAC+AGG - chr7_3:16025915-16025934 None:intergenic 40.0%
!! TCAGATGGTGGAACAAGTGT+TGG - chr7_3:16023687-16023706 None:intergenic 45.0%
CTCAGAGGGTAAACTGATTG+TGG + chr7_3:16023890-16023909 Msa1094410:CDS 45.0%
AAACCTGATCCAAGGACTCT+TGG + chr7_3:16023987-16024006 Msa1094410:CDS 45.0%
ATACCAAGAGTCCTTGGATC+AGG - chr7_3:16023993-16024012 None:intergenic 45.0%
TCCAAGGACTCTTGGTATGT+TGG + chr7_3:16023995-16024014 Msa1094410:CDS 45.0%
ACCAACATACCAAGAGTCCT+TGG - chr7_3:16023999-16024018 None:intergenic 45.0%
! NCCTAAGATTTGAGGTGTCC+CGG - chr7_3:16024235-16024254 None:intergenic 45.0%
CAGCTGACCAAGTTCAAATG+TGG + chr7_3:16025084-16025103 Msa1094410:intron 45.0%
CTGACCAAGTTCAAATGTGG+AGG + chr7_3:16025087-16025106 Msa1094410:CDS 45.0%
AGTATGCTTCGATCGAGAAC+AGG - chr7_3:16025222-16025241 None:intergenic 45.0%
TGCAAATGCTCTATCTTCGG+GGG - chr7_3:16025258-16025277 None:intergenic 45.0%
GTGCAAATGCTCTATCTTCG+GGG - chr7_3:16025259-16025278 None:intergenic 45.0%
GGTGCAAATGCTCTATCTTC+GGG - chr7_3:16025260-16025279 None:intergenic 45.0%
!!! CCCAAAGGGTATTTTGGGAA+TGG + chr7_3:16025555-16025574 Msa1094410:CDS 45.0%
GAACAAGCCCTTTCCGTATA+CGG + chr7_3:16025620-16025639 Msa1094410:CDS 45.0%
ACCTTCACCGTATACGGAAA+GGG - chr7_3:16025630-16025649 None:intergenic 45.0%
AACCTTCACCGTATACGGAA+AGG - chr7_3:16025631-16025650 None:intergenic 45.0%
AACAAGAGCTAGGCCATCTT+TGG + chr7_3:16025716-16025735 Msa1094410:CDS 45.0%
CCGAAATCGGTGGTATGAAA+CGG - chr7_3:16025777-16025796 None:intergenic 45.0%
!! CCGTTTCATACCACCGATTT+CGG + chr7_3:16025774-16025793 Msa1094410:CDS 45.0%
!! TTCATACCACCGATTTCGGT+TGG + chr7_3:16025778-16025797 Msa1094410:CDS 45.0%
!! TCATACCACCGATTTCGGTT+GGG + chr7_3:16025779-16025798 Msa1094410:CDS 45.0%
TCCTTTCACATGGTCAAGAG+AGG + chr7_3:16025856-16025875 Msa1094410:CDS 45.0%
TCCTCTCTTGACCATGTGAA+AGG - chr7_3:16025860-16025879 None:intergenic 45.0%
AAGATCTTCATGACAGGAGC+AGG - chr7_3:16025909-16025928 None:intergenic 45.0%
CATACCTGAGCAACCAAAGG+AGG - chr7_3:16024059-16024078 None:intergenic 50.0%
TCCGGGACACCTCAAATCTT+AGG + chr7_3:16024231-16024250 Msa1094410:intron 50.0%
TCATGGGGAGAACTAGCAAG+AGG + chr7_3:16025177-16025196 Msa1094410:CDS 50.0%
! AGAACAGGAGGCACAGAAAG+TGG - chr7_3:16025207-16025226 None:intergenic 50.0%
ATGCTTCGATCGAGAACAGG+AGG - chr7_3:16025219-16025238 None:intergenic 50.0%
!! CATACCACCGATTTCGGTTG+GGG + chr7_3:16025780-16025799 Msa1094410:CDS 50.0%
AATCACTTCCTTCTCCGGCA+AGG - chr7_3:16025832-16025851 None:intergenic 50.0%
GATGCCTCCTTTGGTTGCTC+AGG + chr7_3:16024052-16024071 Msa1094410:CDS 55.0%
! ATAGGTGTCGTGTCGGTGTC+CGG + chr7_3:16024213-16024232 Msa1094410:intron 55.0%
GATGCGGCCACAACTACAGT+TGG + chr7_3:16025031-16025050 Msa1094410:intron 55.0%
GCTCTATCTTCGGGGGATTG+CGG - chr7_3:16025251-16025270 None:intergenic 55.0%
GCCCTTTCCGTATACGGTGA+AGG + chr7_3:16025626-16025645 Msa1094410:CDS 55.0%
TTCTCCCCAACCGAAATCGG+TGG - chr7_3:16025787-16025806 None:intergenic 55.0%
CGGTTCTCCCCAACCGAAAT+CGG - chr7_3:16025790-16025809 None:intergenic 55.0%
CGATTTCGGTTGGGGAGAAC+CGG + chr7_3:16025788-16025807 Msa1094410:CDS 55.0%
! AGAACCGGTTCTGTCTGGAC+CGG + chr7_3:16025803-16025822 Msa1094410:CDS 55.0%
GAAACCGGTCCAGACAGAAC+CGG - chr7_3:16025810-16025829 None:intergenic 55.0%
TCCTTCTCCGGCAAGGAAAC+CGG - chr7_3:16025825-16025844 None:intergenic 55.0%
! TAGGTGTCGTGTCGGTGTCC+GGG + chr7_3:16024214-16024233 Msa1094410:intron 60.0%
! TGGGGAGAACCGGTTCTGTC+TGG + chr7_3:16025798-16025817 Msa1094410:CDS 60.0%
! GTCTGGACCGGTTTCCTTGC+CGG + chr7_3:16025815-16025834 Msa1094410:CDS 60.0%
! ACCGGTTTCCTTGCCGGAGA+AGG + chr7_3:16025821-16025840 Msa1094410:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 16023407 16026080 16023407 ID=Msa1094410;Name=Msa1094410
chr7_3 mRNA 16023407 16026080 16023407 ID=Msa1094410-mRNA-1;Parent=Msa1094410;Name=Msa1094410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=86|1|1|1|0.5|0.33|3|130|437
chr7_3 exon 16023407 16023467 16023407 ID=Msa1094410-mRNA-1:exon:3596;Parent=Msa1094410-mRNA-1
chr7_3 exon 16023599 16024073 16023599 ID=Msa1094410-mRNA-1:exon:3597;Parent=Msa1094410-mRNA-1
chr7_3 exon 16025087 16026080 16025087 ID=Msa1094410-mRNA-1:exon:3598;Parent=Msa1094410-mRNA-1
chr7_3 five_prime_UTR 16023407 16023467 16023407 ID=Msa1094410-mRNA-1:five_prime_utr;Parent=Msa1094410-mRNA-1
chr7_3 five_prime_UTR 16023599 16023623 16023599 ID=Msa1094410-mRNA-1:five_prime_utr;Parent=Msa1094410-mRNA-1
chr7_3 CDS 16023624 16024073 16023624 ID=Msa1094410-mRNA-1:cds;Parent=Msa1094410-mRNA-1
chr7_3 CDS 16025087 16025950 16025087 ID=Msa1094410-mRNA-1:cds;Parent=Msa1094410-mRNA-1
chr7_3 three_prime_UTR 16025951 16026080 16025951 ID=Msa1094410-mRNA-1:three_prime_utr;Parent=Msa1094410-mRNA-1
Gene Sequence

>Msa1094410

ATGGAAAATTCTAATTATCAAAATGGCTTCAAACAAATTAATGTAAACCTAACAAGTGAACCAACACTTGTTCCACCATCTGAAGAAACAAAGAAAGGAATGTATTTCCTATCAAACCTTGATCAAAACATTGCTGTAATTGTAAGAACTGTTTATTGCTTCAAAAATGAAGAGAAGGGAAATGAGAATGCTTGTGAAGTGATTAAGGATGCATTGAAGAATGTTCTTGTTCATTATTACCCTCTTGCTGGGAGATTAAGTATAAGCTCAGAGGGTAAACTGATTGTGGATTGTACTGGAGAAGGTGCTCTTTTTGTTGAGGCTGAAGCTAATTGTTCAATGGAAGAAATTGGTGATATTACAAAACCTGATCCAAGGACTCTTGGTATGTTGGTTTATGATATTCCTGATGCTAAACATATTCTTCAGATGCCTCCTTTGGTTGCTCAGCTGACCAAGTTCAAATGTGGAGGTTTTTCTCTTGGACTATGCATGAATCACTGTATGTTTGATGGAATTGGAGCTATGGAGTTTGTGAACTCATGGGGAGAACTAGCAAGAGGTTTACCACTTTCTGTGCCTCCTGTTCTCGATCGAAGCATACTAAAGGTCCGCAATCCCCCGAAGATAGAGCATTTGCACCAAGAATTTGCTGACATTGAAGACAAATCCAACACTAGTACCTTATATGAAGATGAAATGGTGTATCGATCATTCTGTTTTGATCCCGAGAAACTAAAAGAATTGAAGAAAAAAGCTTTAGAAGATGATGGCGGTGTTCTTGAATCTTGCACAACATTTGAAGTGCTTTCAGCATTTGTTTGGATAGCTAGAACAAAAGCACTGAAAATGTTACCAGAACAAGAAACAAAGCTTCTTTTTGCTGTTGATGGAAGGGCTAAATTTGAACCAAAACTTCCCAAAGGGTATTTTGGGAATGGAATTATACTAACAAATGCTGTTTGTAAAGCAGGTGAAATTACGAACAAGCCCTTTCCGTATACGGTGAAGGTTATTCAAGATGCAATCAAGATGGTTACTGATAGTTACATGAGATCGGCTATCGATTATTTTGAGGTAACAAGAGCTAGGCCATCTTTGGCTTGTACACTTTTGATCACAACTTGGTCTAGGCTTCCGTTTCATACCACCGATTTCGGTTGGGGAGAACCGGTTCTGTCTGGACCGGTTTCCTTGCCGGAGAAGGAAGTGATTTTGTTCCTTTCACATGGTCAAGAGAGGAGAAGCATTAATGTGCTTCTTGGTTTGCCTGCTCCTGTCATGAAGATCTTCCAAGATTTAATGCAGATATAG
Protein sequence

>Msa1094410

MENSNYQNGFKQINVNLTSEPTLVPPSEETKKGMYFLSNLDQNIAVIVRTVYCFKNEEKGNENACEVIKDALKNVLVHYYPLAGRLSISSEGKLIVDCTGEGALFVEAEANCSMEEIGDITKPDPRTLGMLVYDIPDAKHILQMPPLVAQLTKFKCGGFSLGLCMNHCMFDGIGAMEFVNSWGELARGLPLSVPPVLDRSILKVRNPPKIEHLHQEFADIEDKSNTSTLYEDEMVYRSFCFDPEKLKELKKKALEDDGGVLESCTTFEVLSAFVWIARTKALKMLPEQETKLLFAVDGRAKFEPKLPKGYFGNGIILTNAVCKAGEITNKPFPYTVKVIQDAIKMVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLPFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGQERRSINVLLGLPAPVMKIFQDLMQI*