Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475250 | XP_003602842.1 | 88.189 | 127 | 14 | 1 | 3 | 129 | 6 | 131 | 7.15e-73 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475250 | sp|Q41001|BCP_PEA | 62.712 | 118 | 43 | 1 | 4 | 120 | 6 | 123 | 1.77e-45 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475250 | G7J3Z8 | 88.189 | 127 | 14 | 1 | 3 | 129 | 6 | 131 | 3.41e-73 | 224 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022900 | Msa0475250 | 0.802991 | 4.312640e-49 | -8.615850e-47 |
| Msa0475250 | Msa1147030 | 0.809065 | 2.274563e-50 | -8.615850e-47 |
| Msa0475250 | Msa1459610 | 0.800016 | 1.756348e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475250 | MtrunA17_Chr3g0132411 | 88.189 | 127 | 14 | 1 | 3 | 129 | 44 | 169 | 1.43e-76 | 224 |
| Msa0475250 | MtrunA17_Chr3g0132431 | 68.852 | 122 | 37 | 1 | 4 | 125 | 6 | 126 | 2.60e-52 | 163 |
| Msa0475250 | MtrunA17_Chr3g0132441 | 68.468 | 111 | 35 | 0 | 10 | 120 | 11 | 121 | 3.51e-49 | 155 |
| Msa0475250 | MtrunA17_Chr3g0132701 | 66.387 | 119 | 37 | 3 | 4 | 120 | 6 | 123 | 6.86e-44 | 143 |
| Msa0475250 | MtrunA17_Chr3g0132511 | 66.387 | 119 | 37 | 3 | 4 | 120 | 6 | 123 | 1.07e-43 | 142 |
| Msa0475250 | MtrunA17_Chr8g0335571 | 48.361 | 122 | 58 | 3 | 1 | 119 | 1 | 120 | 1.66e-30 | 108 |
| Msa0475250 | MtrunA17_Chr8g0335531 | 46.721 | 122 | 60 | 3 | 1 | 119 | 1 | 120 | 1.81e-27 | 100 |
| Msa0475250 | MtrunA17_Chr2g0323021 | 38.583 | 127 | 74 | 3 | 5 | 130 | 6 | 129 | 3.07e-23 | 90.5 |
| Msa0475250 | MtrunA17_Chr1g0196801 | 38.393 | 112 | 69 | 0 | 22 | 133 | 20 | 131 | 2.18e-22 | 87.0 |
| Msa0475250 | MtrunA17_Chr6g0459441 | 39.048 | 105 | 63 | 1 | 21 | 124 | 22 | 126 | 1.13e-20 | 82.8 |
| Msa0475250 | MtrunA17_Chr6g0481491 | 37.500 | 104 | 65 | 0 | 25 | 128 | 28 | 131 | 6.85e-20 | 81.6 |
| Msa0475250 | MtrunA17_Chr7g0253701 | 38.261 | 115 | 66 | 3 | 10 | 119 | 8 | 122 | 3.91e-18 | 75.9 |
| Msa0475250 | MtrunA17_Chr7g0253671 | 38.261 | 115 | 66 | 3 | 10 | 119 | 8 | 122 | 3.91e-18 | 75.9 |
| Msa0475250 | MtrunA17_Chr8g0387804 | 34.677 | 124 | 72 | 3 | 1 | 120 | 10 | 128 | 5.69e-18 | 74.3 |
| Msa0475250 | MtrunA17_Chr7g0253631 | 37.398 | 123 | 73 | 3 | 1 | 120 | 1 | 122 | 8.46e-18 | 76.6 |
| Msa0475250 | MtrunA17_Chr7g0253681 | 37.931 | 116 | 66 | 3 | 10 | 119 | 8 | 123 | 1.28e-17 | 74.3 |
| Msa0475250 | MtrunA17_Chr1g0177341 | 35.088 | 114 | 69 | 3 | 11 | 119 | 8 | 121 | 1.56e-17 | 73.9 |
| Msa0475250 | MtrunA17_Chr1g0177331 | 35.088 | 114 | 69 | 3 | 11 | 119 | 8 | 121 | 1.56e-17 | 73.9 |
| Msa0475250 | MtrunA17_Chr4g0064041 | 39.000 | 100 | 56 | 2 | 25 | 119 | 191 | 290 | 1.79e-17 | 77.0 |
| Msa0475250 | MtrunA17_Chr4g0064041 | 35.938 | 128 | 74 | 4 | 6 | 125 | 7 | 134 | 1.78e-16 | 74.3 |
| Msa0475250 | MtrunA17_Chr6g0453921 | 34.074 | 135 | 81 | 5 | 5 | 135 | 17 | 147 | 2.77e-17 | 73.9 |
| Msa0475250 | MtrunA17_Chr5g0394321 | 34.513 | 113 | 71 | 2 | 22 | 131 | 23 | 135 | 3.45e-17 | 73.9 |
| Msa0475250 | MtrunA17_Chr1g0205701 | 32.203 | 118 | 74 | 3 | 5 | 119 | 8 | 122 | 3.62e-17 | 73.9 |
| Msa0475250 | MtrunA17_Chr7g0253761 | 35.200 | 125 | 73 | 5 | 1 | 120 | 1 | 122 | 2.73e-16 | 71.2 |
| Msa0475250 | MtrunA17_Chr4g0041811 | 34.426 | 122 | 74 | 3 | 3 | 119 | 11 | 131 | 3.81e-16 | 72.0 |
| Msa0475250 | MtrunA17_Chr7g0253731 | 35.398 | 113 | 68 | 3 | 12 | 119 | 9 | 121 | 4.51e-16 | 70.5 |
| Msa0475250 | MtrunA17_Chr7g0253641 | 36.066 | 122 | 74 | 3 | 1 | 119 | 1 | 121 | 7.03e-16 | 71.2 |
| Msa0475250 | MtrunA17_Chr6g0453801 | 32.800 | 125 | 79 | 4 | 1 | 121 | 10 | 133 | 3.27e-15 | 68.6 |
| Msa0475250 | MtrunA17_Chr1g0211101 | 32.283 | 127 | 79 | 3 | 1 | 125 | 14 | 135 | 3.60e-15 | 68.6 |
| Msa0475250 | MtrunA17_Chr4g0001571 | 33.981 | 103 | 66 | 2 | 19 | 120 | 23 | 124 | 5.89e-14 | 65.1 |
| Msa0475250 | MtrunA17_Chr6g0458331 | 33.981 | 103 | 62 | 2 | 22 | 119 | 34 | 135 | 8.49e-14 | 64.7 |
| Msa0475250 | MtrunA17_Chr2g0289741 | 29.688 | 128 | 80 | 3 | 1 | 126 | 11 | 130 | 1.34e-13 | 64.3 |
| Msa0475250 | MtrunA17_Chr8g0380901 | 38.136 | 118 | 66 | 5 | 2 | 118 | 8 | 119 | 2.50e-13 | 62.4 |
| Msa0475250 | MtrunA17_Chr2g0301431 | 36.134 | 119 | 69 | 4 | 3 | 120 | 13 | 125 | 3.38e-13 | 62.0 |
| Msa0475250 | MtrunA17_Chr4g0073921 | 33.058 | 121 | 74 | 4 | 6 | 119 | 9 | 129 | 6.65e-13 | 63.9 |
| Msa0475250 | MtrunA17_Chr8g0360371 | 31.405 | 121 | 79 | 3 | 3 | 119 | 1 | 121 | 7.55e-13 | 63.9 |
| Msa0475250 | MtrunA17_Chr6g0483981 | 35.246 | 122 | 71 | 5 | 7 | 120 | 8 | 129 | 2.10e-12 | 63.2 |
| Msa0475250 | MtrunA17_Chr4g0073901 | 33.019 | 106 | 65 | 3 | 22 | 121 | 26 | 131 | 2.39e-12 | 61.2 |
| Msa0475250 | MtrunA17_Chr2g0331181 | 35.000 | 100 | 59 | 2 | 25 | 119 | 27 | 125 | 2.60e-12 | 61.2 |
| Msa0475250 | MtrunA17_Chr2g0319611 | 34.314 | 102 | 60 | 2 | 25 | 119 | 26 | 127 | 4.52e-12 | 61.2 |
| Msa0475250 | MtrunA17_Chr2g0306461 | 34.951 | 103 | 64 | 2 | 20 | 119 | 23 | 125 | 4.63e-12 | 60.5 |
| Msa0475250 | MtrunA17_Chr2g0324711 | 35.714 | 98 | 60 | 2 | 25 | 119 | 25 | 122 | 7.59e-12 | 61.2 |
| Msa0475250 | MtrunA17_Chr4g0039721 | 25.547 | 137 | 94 | 3 | 5 | 134 | 12 | 147 | 2.63e-11 | 58.2 |
| Msa0475250 | MtrunA17_Chr1g0188981 | 29.703 | 101 | 65 | 2 | 25 | 119 | 29 | 129 | 3.72e-11 | 58.2 |
| Msa0475250 | MtrunA17_Chr3g0125761 | 33.051 | 118 | 74 | 4 | 1 | 117 | 10 | 123 | 8.68e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475250 | AT1G72230.1 | 51.429 | 105 | 51 | 0 | 33 | 137 | 31 | 135 | 1.54e-30 | 108 |
| Msa0475250 | AT1G22480.1 | 53.125 | 96 | 45 | 0 | 30 | 125 | 24 | 119 | 4.60e-26 | 97.1 |
| Msa0475250 | AT3G60270.1 | 47.475 | 99 | 52 | 0 | 21 | 119 | 22 | 120 | 2.59e-24 | 92.8 |
| Msa0475250 | AT3G27200.1 | 35.537 | 121 | 76 | 2 | 1 | 119 | 1 | 121 | 4.35e-22 | 86.7 |
| Msa0475250 | AT5G07475.1 | 39.286 | 112 | 68 | 0 | 22 | 133 | 27 | 138 | 2.16e-21 | 85.5 |
| Msa0475250 | AT2G44790.1 | 47.872 | 94 | 47 | 1 | 33 | 124 | 36 | 129 | 6.46e-20 | 81.6 |
| Msa0475250 | AT2G32300.1 | 36.441 | 118 | 73 | 2 | 20 | 136 | 21 | 137 | 2.25e-19 | 81.6 |
| Msa0475250 | AT2G32300.2 | 36.441 | 118 | 73 | 2 | 20 | 136 | 51 | 167 | 3.37e-19 | 81.6 |
| Msa0475250 | AT3G60280.1 | 40.404 | 99 | 59 | 0 | 21 | 119 | 20 | 118 | 1.35e-18 | 78.6 |
| Msa0475250 | AT2G31050.1 | 40.777 | 103 | 59 | 2 | 23 | 123 | 27 | 129 | 1.30e-17 | 75.5 |
| Msa0475250 | AT5G26330.1 | 38.614 | 101 | 59 | 2 | 22 | 119 | 21 | 121 | 5.42e-17 | 73.9 |
| Msa0475250 | AT1G64640.1 | 37.383 | 107 | 63 | 2 | 22 | 124 | 30 | 136 | 6.06e-16 | 71.2 |
| Msa0475250 | AT3G17675.1 | 32.759 | 116 | 77 | 1 | 5 | 119 | 12 | 127 | 7.66e-16 | 69.3 |
| Msa0475250 | AT5G53870.2 | 33.333 | 129 | 71 | 3 | 2 | 119 | 3 | 127 | 2.61e-15 | 71.6 |
| Msa0475250 | AT4G12880.1 | 34.711 | 121 | 71 | 5 | 4 | 120 | 10 | 126 | 2.91e-15 | 68.2 |
| Msa0475250 | AT5G53870.1 | 33.333 | 129 | 71 | 3 | 2 | 119 | 3 | 127 | 3.65e-15 | 71.2 |
| Msa0475250 | AT5G15350.1 | 33.884 | 121 | 72 | 5 | 4 | 120 | 10 | 126 | 4.77e-15 | 68.2 |
| Msa0475250 | AT2G26720.1 | 34.615 | 104 | 66 | 2 | 22 | 123 | 26 | 129 | 8.58e-15 | 68.6 |
| Msa0475250 | AT4G28365.1 | 34.694 | 98 | 61 | 2 | 25 | 119 | 29 | 126 | 3.89e-14 | 66.6 |
| Msa0475250 | AT3G01070.1 | 36.441 | 118 | 68 | 3 | 6 | 120 | 12 | 125 | 4.22e-14 | 65.9 |
| Msa0475250 | AT1G45063.2 | 35.897 | 117 | 69 | 4 | 25 | 137 | 149 | 263 | 1.56e-13 | 65.9 |
| Msa0475250 | AT1G45063.2 | 36.893 | 103 | 58 | 3 | 22 | 119 | 26 | 126 | 1.72e-12 | 63.2 |
| Msa0475250 | AT1G45063.1 | 35.897 | 117 | 69 | 4 | 25 | 137 | 149 | 263 | 1.80e-13 | 66.2 |
| Msa0475250 | AT1G45063.1 | 36.893 | 103 | 58 | 3 | 22 | 119 | 26 | 126 | 1.47e-12 | 63.9 |
| Msa0475250 | AT2G25060.1 | 32.727 | 110 | 69 | 2 | 28 | 132 | 35 | 144 | 3.31e-13 | 63.5 |
| Msa0475250 | AT4G32490.1 | 31.356 | 118 | 77 | 3 | 5 | 119 | 12 | 128 | 3.46e-13 | 64.3 |
| Msa0475250 | AT3G20570.1 | 32.203 | 118 | 72 | 5 | 6 | 119 | 15 | 128 | 5.31e-13 | 63.5 |
| Msa0475250 | AT1G79800.1 | 31.148 | 122 | 78 | 2 | 3 | 119 | 12 | 132 | 6.42e-13 | 63.2 |
| Msa0475250 | AT4G31840.1 | 32.558 | 129 | 74 | 4 | 1 | 121 | 6 | 129 | 1.12e-12 | 62.4 |
| Msa0475250 | AT1G17800.1 | 35.833 | 120 | 74 | 3 | 1 | 118 | 17 | 135 | 5.79e-12 | 59.7 |
| Msa0475250 | AT4G30590.1 | 32.000 | 100 | 62 | 3 | 26 | 119 | 29 | 128 | 5.84e-12 | 60.5 |
| Msa0475250 | AT4G27520.1 | 35.200 | 125 | 73 | 3 | 3 | 119 | 4 | 128 | 7.87e-12 | 61.6 |
| Msa0475250 | AT3G18590.1 | 28.689 | 122 | 80 | 2 | 4 | 119 | 6 | 126 | 1.97e-11 | 58.9 |
| Msa0475250 | AT5G57920.1 | 38.272 | 81 | 49 | 1 | 40 | 119 | 43 | 123 | 2.11e-11 | 58.9 |
| Msa0475250 | AT5G57920.2 | 38.272 | 81 | 49 | 1 | 40 | 119 | 42 | 122 | 2.78e-11 | 58.5 |
| Msa0475250 | AT5G57920.3 | 38.272 | 81 | 49 | 1 | 40 | 119 | 75 | 155 | 2.94e-11 | 58.9 |
| Msa0475250 | AT5G20230.1 | 39.000 | 100 | 55 | 4 | 25 | 119 | 25 | 123 | 3.27e-11 | 58.5 |
Find 39 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTACTGTCTGAACTAAT+TGG | 0.240452 | 3_3:+78379052 | None:intergenic |
| AATATGACAGTGTTTCTCTA+TGG | 0.243627 | 3_3:-78379136 | Msa0475250:intron |
| GACTACAGCTCCTGCACTAC+TGG | 0.377914 | 3_3:-78379079 | Msa0475250:CDS |
| GATTCCTTAGGCTGGCAAAT+TGG | 0.388696 | 3_3:-78379373 | Msa0475250:CDS |
| TGGCATGCGTCTTGCTGTTA+AGG | 0.410850 | 3_3:-78378957 | Msa0475250:CDS |
| TACATTGTGGGAGATTCCTT+AGG | 0.413259 | 3_3:-78379385 | Msa0475250:CDS |
| TGGCAAATTGGTGTTGAATA+TGG | 0.413393 | 3_3:-78379361 | Msa0475250:CDS |
| TACTTCATATCTGCTACTCT+TGG | 0.416128 | 3_3:-78378992 | Msa0475250:CDS |
| GGAATCTCCCACAATGTAGA+AGG | 0.425420 | 3_3:+78379390 | None:intergenic |
| ATATGACAGTGTTTCTCTAT+GGG | 0.434671 | 3_3:-78379135 | Msa0475250:intron |
| TTGAATATGGCACATGGACC+AGG | 0.462025 | 3_3:-78379348 | Msa0475250:CDS |
| TCATCAAATGGCATTGGCTA+TGG | 0.463785 | 3_3:-78379464 | None:intergenic |
| CTTGCAACCTTCTACATTGT+GGG | 0.481023 | 3_3:-78379397 | Msa0475250:CDS |
| AACACCAATTTGCCAGCCTA+AGG | 0.495237 | 3_3:+78379369 | None:intergenic |
| CATCGTCATCAGCGAAGGAA+AGG | 0.510283 | 3_3:-78378907 | Msa0475250:CDS |
| AATTGGATTTCCAGTAGTGC+AGG | 0.512919 | 3_3:+78379069 | None:intergenic |
| ATCATTGTTCTCAAGACTGC+AGG | 0.518138 | 3_3:-78379022 | Msa0475250:CDS |
| TTGTGGGAGATTCCTTAGGC+TGG | 0.542596 | 3_3:-78379381 | Msa0475250:CDS |
| CTTGCTGTTAAGGTTGAGAC+TGG | 0.543826 | 3_3:-78378947 | Msa0475250:CDS |
| CCTTGCAACCTTCTACATTG+TGG | 0.550975 | 3_3:-78379398 | Msa0475250:CDS |
| ACTATCTCATCAAATGGCAT+TGG | 0.552933 | 3_3:-78379470 | None:intergenic |
| ATCGTCATCAGCGAAGGAAA+GGG | 0.562412 | 3_3:-78378906 | Msa0475250:CDS |
| ACAGCAAGACGCATGCCACT+TGG | 0.564795 | 3_3:+78378962 | None:intergenic |
| ATGTAGAAGGTTGCAAGGGT+TGG | 0.572218 | 3_3:+78379403 | None:intergenic |
| CCACAATGTAGAAGGTTGCA+AGG | 0.572261 | 3_3:+78379398 | None:intergenic |
| GTGGAGGGAGTGCCATCAGA+AGG | 0.581640 | 3_3:+78378880 | None:intergenic |
| TGCAACATCGTCATCAGCGA+AGG | 0.584538 | 3_3:-78378912 | Msa0475250:CDS |
| AGGAAAGGGTTACCTTCTGA+TGG | 0.599662 | 3_3:-78378892 | None:intergenic |
| TTTGTAGTCGGTGATAGCCT+CGG | 0.600744 | 3_3:-78379316 | Msa0475250:intron |
| CACAATGTAGAAGGTTGCAA+GGG | 0.617890 | 3_3:+78379399 | None:intergenic |
| ACTTGCTGCAACTTCATCCA+CGG | 0.629770 | 3_3:+78379102 | None:intergenic |
| TATGACAGTGTTTCTCTATG+GGG | 0.630632 | 3_3:-78379134 | Msa0475250:intron |
| AGGGACAAAACCTTTGTAGT+CGG | 0.651766 | 3_3:-78379328 | Msa0475250:CDS |
| CCAATTAGTTCAGACAGTAG+TGG | 0.652205 | 3_3:-78379052 | Msa0475250:CDS |
| ACTCTTGGAGATTGTCCAAG+TGG | 0.659300 | 3_3:-78378977 | Msa0475250:CDS |
| GAGGCTATCACCGACTACAA+AGG | 0.672353 | 3_3:+78379318 | None:intergenic |
| TGAATATGGCACATGGACCA+GGG | 0.694459 | 3_3:-78379347 | Msa0475250:CDS |
| TTGGTGTTGAATATGGCACA+TGG | 0.722849 | 3_3:-78379354 | Msa0475250:CDS |
| CTATGGGGCTAGACACACCG+TGG | 0.749227 | 3_3:-78379119 | Msa0475250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTCTTTTTAGCAATCAACA+TGG | - | chr3_3:78378921-78378940 | Msa0475250:CDS | 30.0% |
| AATATGACAGTGTTTCTCTA+TGG | - | chr3_3:78379216-78379235 | Msa0475250:intron | 30.0% | |
| ATATGACAGTGTTTCTCTAT+GGG | - | chr3_3:78379217-78379236 | Msa0475250:intron | 30.0% | |
| !! | TGGCAAATTGGTGTTGAATA+TGG | - | chr3_3:78378991-78379010 | Msa0475250:CDS | 35.0% |
| ! | GATATGCTTTGTTCTCGTTA+TGG | + | chr3_3:78379126-78379145 | None:intergenic | 35.0% |
| TATGACAGTGTTTCTCTATG+GGG | - | chr3_3:78379218-78379237 | Msa0475250:intron | 35.0% | |
| TACTTCATATCTGCTACTCT+TGG | - | chr3_3:78379360-78379379 | Msa0475250:CDS | 35.0% | |
| CACAATGTAGAAGGTTGCAA+GGG | + | chr3_3:78378956-78378975 | None:intergenic | 40.0% | |
| CTTGCAACCTTCTACATTGT+GGG | - | chr3_3:78378955-78378974 | Msa0475250:CDS | 40.0% | |
| TACATTGTGGGAGATTCCTT+AGG | - | chr3_3:78378967-78378986 | Msa0475250:CDS | 40.0% | |
| !! | TTGGTGTTGAATATGGCACA+TGG | - | chr3_3:78378998-78379017 | Msa0475250:CDS | 40.0% |
| AGGGACAAAACCTTTGTAGT+CGG | - | chr3_3:78379024-78379043 | Msa0475250:CDS | 40.0% | |
| AATTGGATTTCCAGTAGTGC+AGG | + | chr3_3:78379286-78379305 | None:intergenic | 40.0% | |
| CCACTACTGTCTGAACTAAT+TGG | + | chr3_3:78379303-78379322 | None:intergenic | 40.0% | |
| CCAATTAGTTCAGACAGTAG+TGG | - | chr3_3:78379300-78379319 | Msa0475250:intron | 40.0% | |
| ATCATTGTTCTCAAGACTGC+AGG | - | chr3_3:78379330-78379349 | Msa0475250:CDS | 40.0% | |
| ATGTAGAAGGTTGCAAGGGT+TGG | + | chr3_3:78378952-78378971 | None:intergenic | 45.0% | |
| CCACAATGTAGAAGGTTGCA+AGG | + | chr3_3:78378957-78378976 | None:intergenic | 45.0% | |
| CCTTGCAACCTTCTACATTG+TGG | - | chr3_3:78378954-78378973 | Msa0475250:CDS | 45.0% | |
| GGAATCTCCCACAATGTAGA+AGG | + | chr3_3:78378965-78378984 | None:intergenic | 45.0% | |
| GATTCCTTAGGCTGGCAAAT+TGG | - | chr3_3:78378979-78378998 | Msa0475250:CDS | 45.0% | |
| AACACCAATTTGCCAGCCTA+AGG | + | chr3_3:78378986-78379005 | None:intergenic | 45.0% | |
| TTGAATATGGCACATGGACC+AGG | - | chr3_3:78379004-78379023 | Msa0475250:CDS | 45.0% | |
| TGAATATGGCACATGGACCA+GGG | - | chr3_3:78379005-78379024 | Msa0475250:CDS | 45.0% | |
| !! | GACTACAAAGGTTTTGTCCC+TGG | + | chr3_3:78379025-78379044 | None:intergenic | 45.0% |
| TTTGTAGTCGGTGATAGCCT+CGG | - | chr3_3:78379036-78379055 | Msa0475250:CDS | 45.0% | |
| TGATAGCCTCGGTAAGAACT+AGG | - | chr3_3:78379047-78379066 | Msa0475250:CDS | 45.0% | |
| ! | TTAGCTCCTAGTTCTTACCG+AGG | + | chr3_3:78379056-78379075 | None:intergenic | 45.0% |
| ! | ACTTGCTGCAACTTCATCCA+CGG | + | chr3_3:78379253-78379272 | None:intergenic | 45.0% |
| ACTCTTGGAGATTGTCCAAG+TGG | - | chr3_3:78379375-78379394 | Msa0475250:CDS | 45.0% | |
| !! | CTTGCTGTTAAGGTTGAGAC+TGG | - | chr3_3:78379405-78379424 | Msa0475250:CDS | 45.0% |
| ATCGTCATCAGCGAAGGAAA+GGG | - | chr3_3:78379446-78379465 | Msa0475250:CDS | 45.0% | |
| TTGTGGGAGATTCCTTAGGC+TGG | - | chr3_3:78378971-78378990 | Msa0475250:CDS | 50.0% | |
| ! | GAGGCTATCACCGACTACAA+AGG | + | chr3_3:78379037-78379056 | None:intergenic | 50.0% |
| !! | TGGCATGCGTCTTGCTGTTA+AGG | - | chr3_3:78379395-78379414 | Msa0475250:CDS | 50.0% |
| TGCAACATCGTCATCAGCGA+AGG | - | chr3_3:78379440-78379459 | Msa0475250:CDS | 50.0% | |
| CATCGTCATCAGCGAAGGAA+AGG | - | chr3_3:78379445-78379464 | Msa0475250:CDS | 50.0% | |
| GACTACAGCTCCTGCACTAC+TGG | - | chr3_3:78379273-78379292 | Msa0475250:intron | 55.0% | |
| ACAGCAAGACGCATGCCACT+TGG | + | chr3_3:78379393-78379412 | None:intergenic | 55.0% | |
| CTATGGGGCTAGACACACCG+TGG | - | chr3_3:78379233-78379252 | Msa0475250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78378895 | 78379479 | 78378895 | ID=Msa0475250;Name=Msa0475250 |
| chr3_3 | mRNA | 78378895 | 78379479 | 78378895 | ID=Msa0475250-mRNA-1;Parent=Msa0475250;Name=Msa0475250-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|138 |
| chr3_3 | exon | 78379317 | 78379479 | 78379317 | ID=Msa0475250-mRNA-1:exon:21129;Parent=Msa0475250-mRNA-1 |
| chr3_3 | exon | 78378895 | 78379148 | 78378895 | ID=Msa0475250-mRNA-1:exon:21128;Parent=Msa0475250-mRNA-1 |
| chr3_3 | CDS | 78379317 | 78379479 | 78379317 | ID=Msa0475250-mRNA-1:cds;Parent=Msa0475250-mRNA-1 |
| chr3_3 | CDS | 78378895 | 78379148 | 78378895 | ID=Msa0475250-mRNA-1:cds;Parent=Msa0475250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
